<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 05:22:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E292436" ref_strand="+" ref_description="SGN-E292436 	[cLET-1-H10]">
      <seq>taaaaaaaaaaaacagaggaaaatggagaaaatacagcacaaaactgtctccgctaatggaatcaaaatgcacgtagctgaaatcggtgaaggtccagcagttctatttctacatggcttccctgagttatggtattcatggcgccaccaattgctttacttttcaaacaaaggttacagagctattgcgcctgatcttcgtggttacggagacactgaaattccatcggaaatcagtagttatactgcttttcacattgttggtgatttgatttctctgttagatattctggatctagaaaaagtgttcttaattgggcatgattggggtgctctaattgcttggtttttctgtttgtttcgtcctgatcggattaaagctttggtgaatctgagttgtgagttacggcccagaaatccgttgcgaaaaccgattgattgcttgagggaattgcttggtgatgactattacatgtgcagatttcagaaactgggagctcacagccctatttagtggatgcaaaattcaagtcccaactaantttgtggtgggtgagttggacttgacatataatattcctggaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="11307" stop="7162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11009" g_stop="10523" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10522" i_stop="7564" i_length="2959">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7563" g_stop="7462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="589" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E292436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11009" e_stop="10523"/>
          <exon e_start="7563" e_stop="7462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAGGTATTTTTTTCTCTACTGTTCAAGTATATTTACCAGATATTTTTCGAAATTGAATTAGATCTAATATTCATTTGTTTCGCTTTTTTTTCTTAAAAAACTCCGAGATAGTTCTCTTTCCATTCATTTTTTTTTTTGGGTATATGAATGAAAATAAGGATGAAATTTTGATAGCTGGTATTCTTTGAGCCGATCAAAAATTGTTTCGGATTGAGCTATAAGGATGTGGATGGTAGGGAGGAAGGTGTTTTTTTTTTTTTTTTAATTTGGTTTATGGAAACGTAAGACATCCTAAACTAGTATAATCGTAACTATTGTTAAACGAATTGGTAAATTTTTAAAAATAAATATACAAAATACATGATTTTAAAACTCGTCAACAAAGTATATTTAGTCCAATAGCAATTATGAGCCTTTTAACATTATTGCCTCTTGGGCGATTTTACTCTTTATCTTTTAGAGAGTAAGATAGAGATTGTCTTTTTCAAATATTTTCTATTCTATTATTCTTTGCTTTCCAAATACTCTAAATATTATATTATTATTTTGTAATTCACATATTAATTTTCATATAAGGATATTAATAAAATTTCTAATATTCATAATTTTTAAAAAATATAATATAATATCCTTAAGAATATATTATTTAATATATAATACATCCTAAATTAATAATATTTAAGATATTTTTTTTCAATTTTCGTCACTTCAAGTGAATATGATTTGATGAATTTTCGTTATGAAAGATCCACAAAATTCAAATTTAAAAATATAACACATAACTTAATAATTTAAATTCAATATAACAATACATTACATAACACCATAATTTTAAAATTACAACAACAACAATAATAATAATAATTTAATAATCAGGTAGGTCCTTTACAAATTTAACAATATTCGGAAAAGATTAATGTATGATCTAAAGAAGTGGTGATTGTAATTGCAGTTTATCTTATTGGTTGTTTTTTACAATTATTTGAAATTGTTCTTTAAAAATTCAGAATAAAATGTAAATCTATATTAGATAAAGAATTTGAAAAGAATAAACTCTATATTACATGAAAATTATATAGGGTGATTAATTGGAAAAAAAATAAAGAATAGATTTAAGTAACGATATAATATTGAGGTGAGATAATAAGATTCTTTTTTAGAAAAGTAAAATAGAGATTTGAATTGGAGTTGATTGTTTGGAGAATTAGTGAAGTCTATATTTGAAAGTAAAATAGAGGATAAGGATGAATATGTCTATGAATAAAAATCTACAAACTTCAAATTTTGAATATTCATTTGACTTTTCTTATAAAAGTAGAGAAAACCTCCGATTTTCTCCATAAAATAGAGAAAATAAGTTTTACGAGCAACATTTCACATGATAACGTTTTTTTCCATGCTCCCACACACCTCATCTTTACCTCACACCCTCATAGCCCTCATCCCACTCTTACTCCCATAAGTATTTATCAAAATTAGCTATGCTAATATTTTTTACTTACGTATCAAACATAAAAAAATAAATAACAAACTCACTAATTTTTTTAAAAAAAACATTTTTTAAGAAAATATCTTCATTCAAACAAAACACCCCAAAGAAATATCTTATATTAAGTAAATTTCTTAAATTCTTGTTTGTTCGTTTTTATGAGCTCTCACTTTCAAGTTTGTGCTCACTTAGTTTCCTCCAATGAAGAGAGCAAACGGTTTAATGACATGTCGTTCATTTCTACTTATTAAACATTAATTAAATTTCTGTTTTTACTTATTATTTTTATAAATTAATATTAAATTAATTTATTTATGTTAAATTAATGTCTTTTTAAACAAATAGCGAGTAAATACAGAAGCATATTCTTGAAATAAAAGCACTGAAATAAACACTCTAGCTGGATTCAGACTCAGATTTCACAATTCTCCACCTTGTATCGGCATCACAATAACACTCTTATACTTCTCATGGGGCACTATTAATTACATCCTTATTTCTGTCAGTTTCTCCAAATAAATATATGTATATATTAGACATAATTTTTTTTTCGAAATTAACAGATACTACATATTTTTGTGATTTTCTAATAGTATGCTATTATTTAGAAACCTGGGGAAGTGGAAGAGGAATTTGCTTCAATTGATACTGCAAAACTCATCATAGGATTTCTTTCTTCACGTGATACACGTCCACCTTGCATTCCCAAAGAGATTGGCTTTCATCAGGCCTTTGCTCAGTTACCAGCAGCATTACCTTCATGGCTAACACAAGAAGATGTCAATTATTATGCTGAAAAATTAAACAAAACTGGCTTTACTGGAGGATTGAACTACTATAGAAACATGGACAAGTATGTATACCCCCAATATACTTTATACGTTTTAATTTGTCTGTCTAATTCTTGATTTGATACAGTTTTAGAAAAAAGTAGAGAAAGCTTTTGAATGTTATATAATTTTAAACGAAAAAATCTATGAAATATATCACTTTTCAATTTTCCTAAAATTAACGTTTAATTTGTTTATGAAATTATGAATAGAATTTAAACTTTAATTTCAAATCATGATTTAAAGTTTCATATTTTCTTTGAAGAATAATAGGATTTAAAATTTCTAAGTTGTGATTTCAATATATATATTTTAAAAATATAATAAGTTTCTATTTTGTGAAAAAAGATCTATTGTTTTAAATTCTACAATAAAAACTCATGCTTAATGTAAATAGATTATTTTTACCATGTGGAATAATCTTACTAGAGAATATTAGTTATTACTACTATGGTTGATATTTTGAACGTTTATAATAACATATGATCATAAATATTATCTTATTAAAGATTGTATAAGAGTGAATTCGATAGTTTTCACATATTGTTGAATTTTCATGTTTACGAGAATAAAATATAATAAAAAATTTAATTACATATTCAAATAAAAATTTCAACTTCAAATTAATCTGATTTCGATGCAGAAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</genome_strand>
        <mrna_strand>TAAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAANTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 	[cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="12489" stop="11270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12048" g_stop="11570" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12048" e_stop="11570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGTTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCT-AATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 	[TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="12490" stop="11513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12049" g_stop="11811" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12049" e_stop="11811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCT-AATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 	[cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="12879" stop="11877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12580" g_stop="12176" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12580" e_stop="12176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTTTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAA-ATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E353915" ref_strand="+" ref_description="SGN-E353915 	[cTOS-10-L11]">
      <seq>gccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgttttatactaattcctcttaatacatttttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="19494" stop="18506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19194" g_stop="18798" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E353915" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19194" e_stop="18798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</genome_strand>
        <mrna_strand>GCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E554014" ref_strand="+" ref_description="SGN-E554014 	[cTSC-2-P12]">
      <seq>ggggcgctctgactgtggatcccccgggctgcagggaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgtttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21396" stop="18529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="97" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="187" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="316" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="499" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18825" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="901" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E554014" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTG-TTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E203155" ref_strand="-" ref_description="SGN-E203155 	[cLEB-3-D22]">
      <seq>tgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcatgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcctgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="19465" stop="18529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19165" g_stop="18836" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="349"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E203155" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19165" e_stop="18836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTT</genome_strand>
        <mrna_strand>TGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCATGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCCTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E357098" ref_strand="+" ref_description="SGN-E357098 	[cTOS-22-L21]">
      <seq>aacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcnttggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="19527" stop="18549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19459" g_stop="19454" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19227" g_stop="18853" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="381" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="394"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E357098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19459" e_stop="19454"/>
          <exon e_start="19227" e_stop="18853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTG</genome_strand>
        <mrna_strand>AACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCNTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E549082" ref_strand="-" ref_description="SGN-E549082 	[TUS-67-C5]">
      <seq>gaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccgagcatcatattgctgatttttgaatgtgttatctgtttgcaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21389" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21089" g_stop="21028" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="260" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="371" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18891" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="708" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E549082" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549082" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21089" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="18891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCC-AGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTC</genome_strand>
        <mrna_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCGAGCATCATATTGCTGATTTTTGAATGTGTTATCTG-TTTGCAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E544679" ref_strand="+" ref_description="SGN-E544679 	[TUS-67-C5]">
      <seq>gaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21389" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21089" g_stop="21028" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="260" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="371" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18892" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="707" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E544679" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21089" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="18892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCT</genome_strand>
        <mrna_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E281030" ref_strand="-" ref_description="SGN-E281030 	[cLER-7-D22]">
      <seq>cgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagctttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttttcttacccactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="19891" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19591" g_stop="19454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19227" g_stop="18894" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="472" r_length="334" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E281030" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19591" e_stop="19454"/>
          <exon e_start="19227" e_stop="18894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAAT</genome_strand>
        <mrna_strand>CGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCTTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTTTCTTACCCACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E305444" ref_strand="+" ref_description="SGN-E305444 	[cLEX-15-B15]">
      <seq>aaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttatgggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttctcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattatcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctggtttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21191" stop="18600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20891" g_stop="20855" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="166" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="349" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19227" g_stop="18900" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="677" r_length="328" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E305444" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20891" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAA</genome_strand>
        <mrna_strand>AAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTATGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCTCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTATCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGGTTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E339508" ref_strand="+" ref_description="SGN-E339508 	[cTOE-16-I17]">
      <seq>agcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21377" stop="18790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="452" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19090" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="590" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E339508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</genome_strand>
        <mrna_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E305139" ref_strand="+" ref_description="SGN-E305139 	[cLEY-18-A1]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="259" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="370" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19107" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="491" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E305139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E307542" ref_strand="+" ref_description="SGN-E307542 	[cLEY-24-G17]">
      <seq>atgcggagcatcatgggtatcgatctagttgccggatgtaagtccaaaaagactaatcgcgttgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaatatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgatgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21248" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21042" g_stop="21028" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="105" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="234" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="417" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19107" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="538" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E307542" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21042" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</genome_strand>
        <mrna_strand>ATGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGATGTAAGTCCAAAAAGACTAATCGCGTTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAATATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGATGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E257615" ref_strand="+" ref_description="SGN-E257615 	[cLEG-45-D8]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="18809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19109" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="582" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E257615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E203154" ref_strand="+" ref_description="SGN-E203154 	[cLEB-3-D22]">
      <seq>gcacgagggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaagggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaatgaagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21360" stop="18811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="257" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="440" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19111" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="557" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E203154" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAG</genome_strand>
        <mrna_strand>GCA-CGAGGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAAGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAATGAAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E270303" ref_strand="+" ref_description="SGN-E270303 	[cLEM-1-P19]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="18831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19131" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="560" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E270303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E337829" ref_strand="+" ref_description="SGN-E337829 	[cTOE-17-P16]">
      <seq>agcagcatgcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaaaggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21377" stop="18831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="452" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19131" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="549" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E337829" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</genome_strand>
        <mrna_strand>AGCAGCATGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAAGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E257380" ref_strand="+" ref_description="SGN-E257380 	[cLEG-45-C8]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctatagctaggattgagaaagctggaggagaatgtttgacctttgatcagcttgctctcacagcccctcttgggcagaacactgttttgcttatgggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtgccacacagccacacaaagccttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="18835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19135" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="556" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E257380" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTT</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTATAGCTAGGATTGAGAAAGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCACAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTATGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTGCCACACAGCCACACAAAGCCTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E291468" ref_strand="+" ref_description="SGN-E291468 	[cLET-2-H9]">
      <seq>aacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21385" stop="18844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21085" g_stop="21028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="148" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="277" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="460" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19144" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="544" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E291468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21085" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAG</genome_strand>
        <mrna_strand>AACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E343275" ref_strand="+" ref_description="SGN-E343275 	[cTOF-17-D15]">
      <seq>cgagttttttttttttccattctccgaacagaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgtacggaacttctctctctcatcagtttgcatttttatgccttttctttcatcaatcaagtgaataattagagaatatgctgtagtgctcttcactagtatataataacaaaccgaggtgtttttagaattgtggtttgaatctcgtcctgcataggaaatgattatgtattcatggtagaggtaacattggctagtcatttgttttgtaatgctttcttgatcaggttttgcttaggggtccaaagaactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21410" stop="18899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21108" g_stop="21028" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="92" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="182" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="311" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19199" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="749" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E343275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21108" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</genome_strand>
        <mrna_strand>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E257387" ref_strand="+" ref_description="SGN-E257387 	[cLEG-45-E8]">
      <seq>aaaaacctatcagcagcaggcggcggctggaggaaagtacaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcgataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgatgttgggactgttaccgatgatgttcgagcttatgaaatccccaaaatcaacgctactgccttgagattcacggaaacatctatagctaggattgataaagctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="281" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="464" r_length="183" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19215" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="477" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E257387" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGC-GGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCTGGAGGAAAGTACAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCGATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGATGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAATCCCCAAAATCAACGCTACTGCCTTGAGATTCACGGAAACATCTATAGCTAGGATTGATAAAGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E257448" ref_strand="+" ref_description="SGN-E257448 	[cLEG-45-D7]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaagtaagtccaaaaagactaaacgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacctgactggaaaggaggacaatattgctgctgttggtgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcaccgaaacagctagagctaggattgaaaatgctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19221" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="470" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E257448" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAAGTAAGTCCAAAAAGACTAAACGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACCTGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGCTGTTGGTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACCGAAACAGCTAGAGCTAGGATTGAAAATGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E317277" ref_strand="+" ref_description="SGN-E317277 	[cTOA-28-B6]">
      <seq>agcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgtacggaacttctctctctcatcagtttgcatttttatgccttttctttcatcaatcaagtgaataattagagaatatgctgtagtgctcttcactagtatataataacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21377" stop="19040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19340" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="566" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E317277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACC</genome_strand>
        <mrna_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E233460" ref_strand="+" ref_description="SGN-E233460 	[cLED-9-D8]">
      <seq>ggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21367" stop="19154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21067" g_stop="21028" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="130" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="259" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="442" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E233460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21067" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT</genome_strand>
        <mrna_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E268277" ref_strand="+" ref_description="SGN-E268277 	[cLEM-3-A14]">
      <seq>cgaacagaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21395" stop="19155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21095" g_stop="21028" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="158" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="287" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19455" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="469" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E268277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21095" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACAC</genome_strand>
        <mrna_strand>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E313284" ref_strand="+" ref_description="SGN-E313284 	[cTOA-13-C3]">
      <seq>gcggagcatcatgggtatcgatctagttgccggaggtgagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21248" stop="19156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21040" g_stop="21028" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="232" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19456" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="413" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E313284" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21040" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACA</genome_strand>
        <mrna_strand>GCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTGAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E281970" ref_strand="+" ref_description="SGN-E281970 	[cLES-2-E4]">
      <seq>agcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21374" stop="19161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21074" g_stop="21028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="266" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19461" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="442" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E281970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21074" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCA</genome_strand>
        <mrna_strand>AGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E293713" ref_strand="+" ref_description="SGN-E293713 	[cLET-21-J6]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21388" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19486" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="431" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E293713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E313408" ref_strand="+" ref_description="SGN-E313408 	[cTOA-13-C4]">
      <seq>ggcggcggaggaaagtagaagcatcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggatacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcaccgaaacagctagagctaggattgagaaggctggaggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21367" stop="19204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21067" g_stop="21028" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="130" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="259" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19504" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="392" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E313408" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21067" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAAT</genome_strand>
        <mrna_strand>GGCGGCGGAGGAAAGTAGAAGCATCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGATACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACCGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E282111" ref_strand="+" ref_description="SGN-E282111 	[cLES-4-I3]">
      <seq>agcatgcggcggcggaggtaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21374" stop="19222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21074" g_stop="21028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="138" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="267" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="382" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E282111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21074" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGCGGCGGCGGAGG-AAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTG</genome_strand>
        <mrna_strand>AGCATGCGGCGGCGGAGGTAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E279151" ref_strand="+" ref_description="SGN-E279151 	[cLEL-4-L5]">
      <seq>gcacgagaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21362" stop="19229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="129" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="258" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19529" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="366" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E279151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCT</genome_strand>
        <mrna_strand>GCACGAGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247942" ref_strand="+" ref_description="SGN-E247942 	[cLEF-47-H6]">
      <seq>agcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21348" stop="19245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21048" g_stop="21028" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="111" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="240" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="332" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21048" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCAC</genome_strand>
        <mrna_strand>AGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E277272" ref_strand="+" ref_description="SGN-E277272 	[cLEL-3-M24]">
      <seq>gcacgagggaaagtagaagctgcaggcggagcatcatgggtatcgaggtagttgccggaggtaagtccaaacagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="21360" stop="19307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="257" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19607" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="287" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E277272" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACT</genome_strand>
        <mrna_strand>GCA-CGAGGGAAAGTAGAAGCTGCAGGCGGAGCATCATG...................................................................................GGTATCGAGGTAGTTGCCGGAGGTAAGTCCAAACAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E278802" ref_strand="+" ref_description="SGN-E278802 	[cLER-2-H3]">
      <seq>tccagttacagacgtcaaatattatgcctgcatttccttatgttgcaccgttttcgtgtacggtgcctgattgctgtagaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25145" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25445" g_stop="25830" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E278802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25445" e_stop="25830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</genome_strand>
        <mrna_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E205095" ref_strand="+" ref_description="SGN-E205095 	[cLEC-16-G3]">
      <seq>agaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25222" stop="26272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25522" g_stop="25972" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E205095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25522" e_stop="25972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACAC</genome_strand>
        <mrna_strand>AGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E372915" ref_strand="+" ref_description="SGN-E372915 	[TUS-32-H21]">
      <seq>agctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcaaatattgcctgttcaagttctgaagagagttttgcaagatgttctgtgtcatatatcagagatgattgttggggctttactgggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgttgatatccgtatgttggaatcatttgctgaaaaccaagctcctctcctatctgaagcagatgctagtcagctgaaagcagcattgggcgagtccaggcagttggttaatctactcttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcacagttgttactatctcggaaaagatgaaggatcaaagtgacagactttttgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25457" stop="26666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25757" g_stop="26366" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E372915" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25757" e_stop="26366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTC</genome_strand>
        <mrna_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCACAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E292818" ref_strand="+" ref_description="SGN-E292818 	[cLET-11-M3]">
      <seq>agctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25457" stop="26281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25757" g_stop="25981" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E292818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25757" e_stop="25981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTA</genome_strand>
        <mrna_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E372914" ref_strand="-" ref_description="SGN-E372914 	[TUS-32-H21]">
      <seq>tgcctgttcaagttctgaagagagttttgcaagatgttctgtgtcatatatcagagatgattgttggggctttactgggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgttgatatccgtatgttggaatcatttgctgaaaaccaagctcctctcctatttgaagcagatgctagtcagctgaaagcagcattgggcgagtccaggcagttggttaatctacttttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatttcggaaaagatgaaggatcaaagtgacagactttttgggtcttttggcacaaggggagctaagcagaacactaaaaagaaattttttgatgcattaattaaaagattgaaggacgtcaactgagtttgcgaatctttgtatgttatgttccttagggagatttccatattgtagttgtgttgattacttgctgatttcatatctagcttcctttttttttgcaaattgcctaccattttacgtaattttttcctcccctagttccacattgattgctgtattatttttcagagcatacatatttttttgcaactcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25697" stop="26947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25997" g_stop="26623" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E372914" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372914" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25997" e_stop="26623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATAC</genome_strand>
        <mrna_strand>TGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATTTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTTTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATTTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATTTTTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTTTGCGAATCTTTGTATGTTATGTTCCTTAGGGAGATTTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTTTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTTTTCAGAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E356588" ref_strand="+" ref_description="SGN-E356588 	[cTOS-21-D9]">
      <seq>agttggttaatctactcttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatctcggaaaagatgaaggatcaaagtgacagactttttgggtcttttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggacgtcaactgagtctgcgaatctctgtatgttatgttccttagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttcctttttttctgcaaattgcctaccattttacgtaattttttcctcccctagttccacattgattgctgtattattcttcagagcatacatattcttttgcaactcagatatagtctttttatctcatgaaactagtctcttctcgtttggcttctttttccgtagaataattacatcttctcttcgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="25922" stop="27026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26222" g_stop="26728" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E356588" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26222" e_stop="26728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</genome_strand>
        <mrna_strand>AGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E313277" ref_strand="+" ref_description="SGN-E313277 	[cTOA-18-N19]">
      <seq>ccttataaaaaaaaaacggtgaactttggaacaacgaaaaacatcaatgttcacagaaatgtcaatagcttcaacaagaagtattttttacctctttctcttcttttttgccactgcagtttcaagaaatgagaagctatcagcttatgaagagctacagcgttatgatttcccaatggggattcttccaaaaggagtaaaagactacaaattaaaccccaaaacaggtgaattctcagcttatcttaattctacctgcagcttcaaattggagaactcatatcaactgaattacaagcctgttataaaaggagttatatctaaaggcaggcttaggaaactgtgtggtgttagtgtaaaggtggtgttgctatggcttaacattgttgaagttaacagaaaaggtaagaatcttgagttttcagttggactcgcttcggcgaattttccggttgagaattttgaggaatgtccacagtgtggacgtggattgaattgtgttgatgaagatgacaatgttgtgtcttccttttaactactttgattgaaatctagttgtttttttttttttgttttctggtggtggaaatgatgtgtttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="26955" stop="28157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27255" g_stop="27857" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E313277" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27255" e_stop="27857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAT-AAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTG</genome_strand>
        <mrna_strand>CCTTATAAAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E338920" ref_strand="+" ref_description="SGN-E338920 	[cTOE-21-B6]">
      <seq>agcttctccggtcatcggcgatgaggattctcagtccccgacggcatacgagattctacaggaatacgatattccggcagggatacttccgaaaggcgtaacaaggtacgaactcgacaaaacaacgggcaatttcgccgtttactttaacaaatcgtgcagtttcagcataagcggctatgatctcaagtatatgagtaaaattactggtaaaatctctaaggatcggcttgcgaaactgaaaggcgtacaggtgaaactgctttttttttttgtcaatattgtgggagttactcgtgacggcgatgatctcggtttctccgtcggtgtttcttctgttgattttgcaattgagtacttctatgaaccgccagagtgtggatgtggatttgattgtgtcaattctggagaaaacgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="32877" stop="33897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33177" g_stop="33597" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E338920" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33177" e_stop="33597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAACTTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGTACT</genome_strand>
        <mrna_strand>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAAGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAAACTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 	[TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="35431" stop="36326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36052" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATA-AAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 	[TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="35431" stop="36326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36016" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 	[cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="35432" stop="36478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35732" g_stop="36178" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35732" e_stop="36178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATA-AAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAGGAGAGACG-CTGGCAAATTTTAGCTAATGTTTACTATGGAGCACAATTAAATCAAACCCTAGTTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E347597" ref_strand="+" ref_description="SGN-E347597 	[cTOF-26-B3]">
      <seq>ggtaactacgaacaagatatgccttctgtagcccttcccttatgcatcctcctactcctactccaactctctgcagcttcaccggtcgtcggcgatgaggattctcagtccccgacggcgtatgagattcttcaggaatacgactttccggtagggatacttccgaagggcgtaacaaggtacgaactcgacaaaacaacgggcaatttcgccgtttactttaacaaatcgtgcagtttcagcataagcggctataatctcaagtatatgagtaaaattactggtaaaatctctaaggatcgacttgcgaacttgaaaggcgtacaggtgaaagtgcttttgttttggattaatattgtcgaagttactcgtgacggcgacgatctcgatttctccgtcggtattgcttctgctgattttgcaattgataacttctatgaatcgccacagtgtggatgtggatttgattgtgtcaattctggagaaaatggcacaggtaagttcgatttgaagctgcttatcacttcgtcttgaatcgtaaattttcagaaatcgactgtagattaagatgttttaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="45096" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45396" g_stop="45975" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E347597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45396" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT</genome_strand>
        <mrna_strand>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E308953" ref_strand="+" ref_description="SGN-E308953 	[cLEY-23-M23]">
      <seq>tcgataaggacaccggaaaattcagtgtacatcttagtgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagtttactgaaagagatacttgcaactcatggaaaagatcaggtgacatggttgcagtgtacagaaagcctgaaatggtcattctcctccttcctcctcatcatagttgcaatacaaaaagtcgaaaactcatgtgttcatttacattatcgttatgttatctacaatttcgtctttgctctgtcatggatacaaaatattcttgaaattgctgtttataacgagattcttttccatcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="46966" stop="51447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47266" g_stop="47651" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51150" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="613" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E308953" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47266" e_stop="47651"/>
          <exon e_start="50924" e_stop="51150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGC</genome_strand>
        <mrna_strand>TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E290047" ref_strand="+" ref_description="SGN-E290047 	[cLET-5-A10]">
      <seq>attagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="47021" stop="47935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47321" g_stop="47635" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E290047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47321" e_stop="47635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCT</genome_strand>
        <mrna_strand>ATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E318410" ref_strand="-" ref_description="SGN-E318410 	[cTOB-10-E21]">
      <seq>gaaggaggagaatgcccatttcaggctttctgtacagtgcaaccatgtcgcctgatctttcccatgagttgcaagtatccgcaagcactcaacaaatagagtcatgtactagatatcttccttataattttagaggcaatgcagaagtcaaacccactataaagtgccataggttgctacataagagaaagagaaagggcagagcaaataagcagatcttgtgggcgcaggtctgtctctcacacaatgtactatacaagtgcatcaaaggtttttagtattggaccaaatattatttatttagtaataggtttatatttcttacttcttgcaattttagtgaattattacaaaaaaaaaaaaaaaaaactcgagactagtttctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="51301" stop="50344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51001" g_stop="50650" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="370"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E318410" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318410" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51001" e_stop="50650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTCCTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTACAGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACA</genome_strand>
        <mrna_strand>GAAGGAGGAGAATGCCCATTTCAGGCTTTCTGTACAGTGCAACCATGTCGCCTGATCTTTCCCATGAGTTGCAAGTATCCGCAAGCACTCAACAAATAGAGTCATGTACTAGATATCTTCCTTATAATTTTAGAGGCAATGCAGAAGTCAAACCCACTATAAAGTGCCATAGGTTGCTACATAAGAGAAAGAGAAAGGGCAGAGCAAATAAGCAGATCTTGTGGGCGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTAATAGGTTTATATTTCTTACTTCTTGCAATTTTAGTGAATTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 	[cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="61961" stop="53370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61661" g_stop="61329" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61328" i_stop="53772" i_length="7557">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53771" g_stop="53658" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="450" r_length="114" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61661" e_stop="61329"/>
          <exon e_start="53771" e_stop="53658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCAAGAGAGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAAGGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAATTTACTATTATATACAATTTTCCCTCGTATATATTATACACTAAATTAAAAAAATAAATTGAATTCTCTGGAAAAGTAACACATCACAAGTTTCGAGTGGACATAAACAGAATTGGGCACATTAGAATATTTTGTGAATCGCAAGTAAGATCAAATTAAAGCTATCAACTAATCAATCTCATTCACATCTCTCTCAATAATTGGGAGATGGTATCAACTGGAAAAATAAATATTATTATTCGAAAGAATTTTAATAGCTAAATTGATTAAATTTTGAATTATAATCAATTTAATTTGTTGATGTTTGAATTTTTGTCTAGTTGAAATTAAAGTATTATCGACTCGATTTTCTAGGACGAGTCATAAAATAATTTTATAAATATTTTGTTTGCTGAACTAATAAAAGGAAAACATTATGAATAGTACGATCTAATAAAATTGATAGTCACTTAATAGAAAACTCAATATAGACTATCGATTCAAAAATCATAAATTAAAATTTGTGGCTCCTGCATAGTGATATTTTCTCCGTTTCAAAAAGAATGTTTTTATTTTATTTTTAATTTGTTTAAAAAAGAATGACCCTTTTTCGTTTTTGACAACACTTTAACTTTAATTTTCCACGTGACATATTTAAAACCACAAAATCAAGATCATTTTGATACATTTGACATAATTTTATTTTCGAATCATAAAATTAAAAAAAAAAATTCAGACTTTATTCCAAATCGAATCAGGTTATCATTTTTTAAATGGAGGGAATAACTAATAAGTGAATGGTAAACTAAAGATAAGTTCAAAAGAAAAATAAATTACTTTAAGAAATAAAACCTATCTTTTATCAACACGTATAATTAATCATTCTTGTGATGTGATCATTACTAAATTAAAAGTTTATGGATAAGATCATTAGACCAAGTCAAGTGTCAAATTAATGTGGGATTATCATCAAATAAGACACAAGTGGCTTAAATTATTATTTTTTACCCTTTTCGCGGTTAAAGTTTATATCAAATTTGTAAATAAGTTAAATACGATTTATTAATCAGTTCAATTAATTTATAAGCTTAATCAAACAATTTGAATGGTGTATTTGACACCGCTATGTTACATAATAAGATTTTTTTTTTCTTTTTTTGATTCCTTGTGGTATTTTGGTTTTGCTCCACAAATTAGGTATAAGAATAGCATACACAAAAAAATATGTATATTCTGTGAGCCTGAAATTAATATATGATAGGGAGAGCAAATTGTTTTTTTTTCCAGAAAAAATAATGTTGTCTTTTGGTAGTGTAAAAGAGGCAAATTAAAGCTAGGATTTTTATTTTGTGTGTGTGGAATTAATATTGATCACTGAATAATTAATGTAATAATAGGAATCTGCCTTTGCCACAGCTTTTTGGCTCCACAAAAATATTTGTGTGTTCAAAAATAGGGCTTTAATTGTGTTGATAACAACTCCCACTATTTATTCTTATTCTATAACAAGATACTGAGAGGGAACATTAAAAAAAACATAATATAAAAATATATGGGCTTATATTCAAATAAATATGATTTGGACAAAAATAAAAATCATATTTGTTAAGTGCTAACTCTGTCAAGTATGATTTGGACAAATATGAAATTACATAGGGTTATATTCAAAAAATTACGTGATTAAGTAAATTTGTACTATTTAATTATTTATCATAAATATAGTTTGTTATAATTAACATATGCAACTAATATTATACACTAATTACATGGGACGACTTCGAGTTTATATAATAGTCACGTTTGTATATGTATAATTCGCCAAAATATATAATTATTTAACTGACATACATATATAATTTACCTCTCTCCCACTCTCTGTCCTCTCCCAATCTCGCTCTCCTCTCTCCTCTCTCTCAATCTCGCTCTTCTCTCTCTCCCAATCTTGCATGTCATATATACAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGCATATGTATAATATAAAATTATCTAACCGATATACATATACAATTCATCTCTCTCCACTCTCTCGCTCGCCTATCTCCTCCTCTCCCAGTCTTTCTCGCTCGCATCTCTCAACCCTCTTCCGATCTCGCGTGACATATGTACAAATGCATATGTATAATATACAATTATCTAACCGATATACATATACAATTCATATCTCTCCACTCTCTCGCTCGCCTATCTCCTCCTCTCCCAGTCTTTCTCGCTCGCATCTCTCCTCCCTCTTACTATCTCGCTTGACATATGTACAAATACATATGTATAATATACAATTTTATATATATATATGACGTGTAGCTACAAATTATGGTTATCAAATCATAATTAGCTTATTTTTAATTGCTTCTATATGAAAGTTCCTTTTTATTTAATATTCAATATCTATATTAGTATTTAACTAATTTAAATTTTTATTGCTTAGGATTCCATTAAAGGGAAAAACTATTTTTAAATTTTAAACACAAAGCTTCTAATTAAAAAAATCAGTCTCATCCACCTCACCATATTCTCGGGTGATTCTTTTTTTTTGGTTGTTGCAAGTTGTTGAAAGTGCATGTAAATAACTGGATACTTATGGATCATATGCTTGCCGTCCTTTCTTTTTTGCCTTCACTTAAATATTAGTTTCGTTTCATATTTGTTAATTATTTTACTAAAAATAATTATTCCATATAAATTGGTACTTTATTAAATTAAAAAGTATTTATTAATTATTTTTCTTATATCATTCTTATATTTAATTTTTTTAAAAAAAATATTCACATTCATTTATAGTCTCTTCTTTCTCCTTCAAAAATTTACTATATTTTTATTTATATGATTTAAATTCATATCATACGTCGAACTCGTTATCTCTTTTCACAGGATAAGCATAAGAAAGATTCACAATTTTCAAATTAGTAAAATTTCATTAATCAAGATATCTTTAAAAAAAATATTTCTCTATCTAGTTTTAGTAAAATTGCATTTTTCAGCTAATAAACCTTATTCTCTTAATTATTGTTTTCGATCGCAAATGACCCGTCAACTTTTCTGATTAAATTAGAGTAAACAAGATTTAATTCACACTAGATGAATGATTCAATTTTTCCATATATATATTATGTGTGTAATTCAATTTTCTAAGTGGCGTGTCGCTATTAGATTACAATGTTAATATAATATTTCAAGAGTGGATTGATTGGCGAAAATAAATAATTTCACCGTCTCAATTTATTTGATTAATTTTAATTTGGTATATTTTTCAATAAACAAAAATTAAAAAAAAATTGATATTATAATTAAAATATGTGAATTTTATTAAAATATTTTTTAATTTTATAATTCTCATATGAAAAACTAAAACGAAAACAAATAATTGAAACAAAAAAAAGCACTAAGAGCGTTTGAATTCGCTTATATTTAGGTATTGTTGACTTTAATATTTATCCACACACAAACCTTAATATATATTTTGTGACGAGATTTCTCTCTTATTAAAAATTTTTCAAATTCGAAAAACGATCTTTCTTTATTCATTTTGTCTCAATTTATATGATCTATTTTTTATTTAGTCTAAAAAAGAATAATAATATATTTTTATATTAAATAATAATTTAATTTTTAAATAATTATTTTATCCAGAATTATACAAATATCTATCACTTGTTTTAATTTTTTTTTCTTAAACTTTCTATCAAGCCAAACTAACTCATATAAAATAAAACCAAAAAAATAGAGGTACTCCTCTTATATTATTTGTCCATCATTGACTTTGCACAATTTTAAAGTTAAATTTAAAATTAAAAATTAAATATAAAATCATCCATTTAACTTCATAAAATAAACAAGTATTGTTGAATATGTTAAAAAATAGTGCCTATTATTGGACAGATAATAAATTCAATATCTTGAAAAATATAATAATAAATGACTATAAAGTAAAAAAATATTAATCAAACATTTCAAAACTGTATAATGAAACACAATATTAATAATTGTTGGACGAAAAAAGTATTAGAGAGTTGCCCCCAAAAAATATATATATATATACATAAATTTAAATATAATCAAACTTCAATATAAACACGTAAAAAAAAAAAAAAAAGTCGGTTTAACTAAGAAAAAGTATCGACCAAGTGTCAACTAAGGAGAGGACCTTTGCGTCTAAATAGTGGCCAATATTCACGTGGCCCCAAATTAAACCCTAGTCCATATTTGCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAATGGATAGAGGAAATACAACAGAAATAACATATACGTAATAGAAAAGCATGATTTTTCTAAATAAATTAAATATTTATTTTATAGAAATAAAAAAATTGAAAGTAACTTTCTTTATTACAATTATAGACGATATAATACACATAGGGGTTGTTTGGTACAAACATTGATAATGCATGGATTAATAATGCATGGATTAGTAATGTACGGATTAATAGTGCAAGGATTATTTTTTTGTAAATGTTTGGTTCACTACTTTCTACCTAATTTTGTCTTTAATTTATAATTTTACAAAAAAATTCTTTTCTATTATACCCTCGTATTATTATGAGTGTTTATTTCATGTAATTGGGTCAAGGTAATAACCATCGGACCGGATAATTTTTTGAAAGAATTTTTTGTTTCATTTAATTAGTTAAATCATATACATATATACAAAATTATTATTAATTTTAAGGTAAGATGTACCATTAAGAGGATCAATGATGGCACAATATACTTCTAATTTTTTGTGGGTTAAGTATATATCTTAAATTTAACATAGATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTATTTTTAAAACAAATAGTTCAAGTGGTAATTGACAAATTATCTTGAATATAAAAATAAAAAAAAATAAAGAATTTTTTTTTAGTAAAATCATTAAATTACACCAAACGAATTTGGAGAATTAAAAAGGAACATTTATAACCACTCCAATACAAATAAAAAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAAGGGTTAGTTTAGTCATTTAAGGATCTTATTCAGGGTTTAACAAACCTTGGATTAGTTATCCCTCCATTTCCAAGGGATAAGATAACTCATACGGAAAATGGTCAAAAATACCCTTGAACTATTCGAAATAGCTCAAATATACCTTTGAACTATATTTTCGCTCAAAAATACCCTTCTCCTCAAACTATAGGGTTAAAAAATAAGACAACTTTCACATATAGCAAATAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATGCGCTCCATAGCAAACATATGAACTATATAATTCGATATACATATACAGTTGAAGCAAATTGTATAAAACAAATTGTATAAAACAAGAAAGAGAAAGACACTTGGGCGGGGAATTGTATAAAAACGAATTGTATTATTATAAGTATATAGAATGATTATATACAATTTGAATTTGTATAAAATGAGAAAGAGAGAAAGACAAAAGAGACTTGACAAGGAATATACAATTGAATCGAGTTGTATAAAACGAGAAAGAGAGAAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAGAAATGTAAAAGAAACTGGGCATGGGAGTATTTTTATTGTATAAATATAAGTGTATAGGACGAAAATATATGTACTTGCATGTGTATATACAATTTTCTCACGCTTTATTCAAACAGAAACACAATTTATACATTTCGCTCCTGTTTGTATAAGTGAGAAAGGCGAGGGTGGCGAGCGAGATCTGGAAGAGGGGAGAAAGGGGAATAAAAATATATGTATTTTGTACAATTTTCTCTGCTTTATACAATTAGAAACACTTTTTATACACTTGTGTTTGTATAAAAAGTGAGGAGGTGAGTGAGAGATTGGAGGAGAGTGGCGAGCGAGATATTTGGGAGAGAGGCGTCTGACAATTTTTTGCAAACGTTTGCTATGGAACACAATT-AATCAAATCCTAGCTACTCCATTTGTTTTAGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E305337" ref_strand="+" ref_description="SGN-E305337 	[cLEX-15-B14]">
      <seq>gttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctannnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57021" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56721" g_stop="56655" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="525" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55738" i_stop="55464" i_length="275">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55449" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="540" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E305337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56721" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
          <exon e_start="55463" e_stop="55449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACA</genome_strand>
        <mrna_strand>GTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT...................................................................................................................................................................................................................................................................................ANNNAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244244" ref_strand="+" ref_description="SGN-E244244 	[cLEF-37-K15]">
      <seq>aatacgtaaacctggagattgaagaattcaaaaaaaaaaagatgaaaaaaataggatctaaagcccgaagattaacactaatactataattatttcatttgcatgaataaaagatactaattaaagaaagatattacaataagcttaaaatttaaaagcaacaaagcacgagtaaatttcacactggtatatttttctgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="55388" stop="56190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55688" g_stop="55890" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E244244" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55688" e_stop="55890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGTAAACCTGGAGATTGAAGAATTCAAAAA-AAAAAGAAGAAAAAAATAGGATCTAAAGCCCGAAGATTAACACTAATACTATAATTATTTCATTTGCATGAATAAAAGATACTAATAAAAGAAAGATATAACAATAAGCTTAAAATTTAAAAGCAACAAAGCACGAGTAAATTTCACACTGCTATATTTTTCTGATAAA</genome_strand>
        <mrna_strand>AATACGTAAACCTGGAGATTGAAGAATTCAAAAAAAAAAAGATGAAAAAAATAGGATCTAAAGCCCGAAGATTAACACTAATACTATAATTATTTCATTTGCATGAATAAAAGATACTAATTAAAGAAAGATATTACAATAAGCTTAAAATTTAAAAGCAACAAAGCACGAGTAAATTTCACACTGGTATATTTTTCTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E308864" ref_strand="+" ref_description="SGN-E308864 	[cLEY-23-A20]">
      <seq>taccacgaggcttatctggaagcaactgaaaatctttgaaggggggccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56292" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56005" g_stop="55735" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E308864" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56005" e_stop="55735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTT</genome_strand>
        <mrna_strand>TACCACGAGGCTTATCTGGAAGCAACTGAAAATCTTTGAAGGGGGGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E391990" ref_strand="-" ref_description="SGN-E391990 	[TUS-34-C3]">
      <seq>ccccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57164" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="668" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E391990" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391990" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CCCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E397839" ref_strand="-" ref_description="SGN-E397839 	[TUS-34-E3]">
      <seq>cgccggagaaagagagttgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57164" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="668" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E397839" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CGCCGGAGAAAGAGAGTTGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E262197" ref_strand="+" ref_description="SGN-E262197 	[cLEG-58-L20]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcggggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55746" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="670" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E262197" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTC-GGGCTTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E272154" ref_strand="-" ref_description="SGN-E272154 	[cLEN-4-G9]">
      <seq>gctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57061" stop="55452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56761" g_stop="56655" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55751" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="553" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="575"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E272154" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272154" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56761" e_stop="56655"/>
          <exon e_start="56196" e_stop="55751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGG</genome_strand>
        <mrna_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248608" ref_strand="-" ref_description="SGN-E248608 	[cLEF-58-K1]">
      <seq>tcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57040" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56740" g_stop="56655" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="529" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="554"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248608" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56740" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>TCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246749" ref_strand="+" ref_description="SGN-E246749 	[cLEF-45-P7]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57160" stop="55456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55756" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="647" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246749" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATC</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E306599" ref_strand="-" ref_description="SGN-E306599 	[cLEY-19-A15]">
      <seq>gctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57061" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56761" g_stop="56655" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55757" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="547" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E306599" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306599" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56761" e_stop="56655"/>
          <exon e_start="56196" e_stop="55757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAAT</genome_strand>
        <mrna_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E367871" ref_strand="+" ref_description="SGN-E367871 	[TUS-22-A17]">
      <seq>ttttttttttaacactaatattataattatttcatttgcatgaataaaagatactaataaaagaaagatataacattaacgcttaaaatttaaaagcaacaaagcacgagtaaatttcacactgctatatttttctgataaaacagttccttcactaaattctcttttttcgatgatcgaaaatctccgatgagtaaccggagatcaacggggcagcttcaaagattttcagttgcttccagatctgtgtttcaacagcatcttccggagctcatcagcgtcaatctcatttgcttgtccttgcggactatagtaaccggtaactggatctggcacccatgaagtcttcaccgattcctctccacttttttgcatcatcacgttgctccttggcactccttttgctacaccggaaactgcaccttgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="55458" stop="56480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55757" g_stop="56180" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="432" r_length="425" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E367871" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55757" e_stop="56180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACACTAATACTATAATTATTTCATTTGCATGAATAAAAGATACTAATAAAAGAAAGATATAACAATAA-GCTTAAAATTTAAAAGCAACAAAGCACGAGTAAATTTCACACTGCTATATTTTTCTGATAAAACAGTTCCTTCACTAAATTCTCTTTTCTCGTTGATCGAAAATCTCCGATGAGTAACCGGAGATCAACGGCGCAGCTTCAAAGATTTTCAGTTGCTTCCAGATCTGTGTTTCAACAGCATCTTCCGGAGCTCAGCAGCGTCAATCTCATTTGCTTGTCCTTCCGGCCTATAGTAACCGGTAACTGGATCTGGCACCCATGAAGTCTTCACCGATTCCTCTCCACTTTTTTGCATCATCACGTTGCTCCTTGGCACTCCTTTTGCTACACCGGAAACTGCACCTTGTGATGC</genome_strand>
        <mrna_strand>TTTAACACTAATATTATAATTATTTCATTTGCATGAATAAAAGATACTAATAAAAGAAAGATATAACATTAACGCTTAAAATTTAAAAGCAACAAAGCACGAGTAAATTTCACACTGCTATATTTTTCTGATAAAACAGTTCCTTCACTAAATTCTCTTTTTTCGATGATCGAAAATCTCCGATGAGTAACCGGAGATCAACGGGGCAGCTTCAAAGATTTTCAGTTGCTTCCAGATCTGTGTTTCAACAGCATCTTCCGGAGCTCATCAGCGTCAATCTCATTTGCTTGTCCTTGCGGACTATAGTAACCGGTAACTGGATCTGGCACCCATGAAGTCTTCACCGATTCCTCTCCACTTTTTTGCATCATCACGTTGCTCCTTGGCACTCCTTTTGCTACACCGGAAACTGCACCTTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247741" ref_strand="+" ref_description="SGN-E247741 	[cLEF-42-F17]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57175" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="659" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="670"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247741" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245513" ref_strand="+" ref_description="SGN-E245513 	[cLEF-43-P11]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaatctttcggctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57175" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="659" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="687"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E374904" ref_strand="-" ref_description="SGN-E374904 	[TUS-15-A17]">
      <seq>cctaagttcgccgaagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="656" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E374904" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374904" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGAAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E273496" ref_strand="+" ref_description="SGN-E273496 	[cLEN-3-J14]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatccgnggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="658" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="668"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E273496" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCAT-C--GGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCCGNGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E378492" ref_strand="+" ref_description="SGN-E378492 	[TUS-15-A17]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="655" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="665"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E378492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E552877" ref_strand="+" ref_description="SGN-E552877 	[cTSB-5-F13]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="655" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E552877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E549058" ref_strand="-" ref_description="SGN-E549058 	[TUS-66-O16]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="221" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="586" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E549058" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549058" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E544533" ref_strand="+" ref_description="SGN-E544533 	[TUS-66-O16]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="221" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="586" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E544533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E543994" ref_strand="+" ref_description="SGN-E543994 	[TUS-66-B14]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="651" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E543994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E307686" ref_strand="+" ref_description="SGN-E307686 	[cLEY-16-C9]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccggtgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="220" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="585" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="595"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E307686" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGGTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249554" ref_strand="+" ref_description="SGN-E249554 	[cLEF-56-F24]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="649" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="661"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249554" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E370155" ref_strand="-" ref_description="SGN-E370155 	[TUS-28-C4]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="641" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="652"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E370155" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E370156" ref_strand="+" ref_description="SGN-E370156 	[TUS-28-C4]">
      <seq>aaagatgagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57156" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="641" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="653"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E370156" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGA-GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AAAGATGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246971" ref_strand="+" ref_description="SGN-E246971 	[cLEF-41-K11]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="639" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E353871" ref_strand="+" ref_description="SGN-E353871 	[cTOS-10-C7]">
      <seq>tccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57053" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56753" g_stop="56655" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="537" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="548"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E353871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56753" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E305770" ref_strand="+" ref_description="SGN-E305770 	[cLEX-14-K22]">
      <seq>tcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttatggctatatctttcttttattagtatctttcattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57046" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56746" g_stop="56655" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="530" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E305770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56746" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATGGCTATATCTTTCTTTTATTAGTATCTTTCATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249150" ref_strand="-" ref_description="SGN-E249150 	[cLEF-50-C5]">
      <seq>ctttctcaaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57018" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56718" g_stop="56655" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="502" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249150" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56718" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTTTCTCAAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304199" ref_strand="-" ref_description="SGN-E304199 	[cLEX-6-M23]">
      <seq>gactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatggaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57002" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56702" g_stop="56655" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="487" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="497"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304199" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304199" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56702" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGGAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303225" ref_strand="+" ref_description="SGN-E303225 	[cLEX-5-K11]">
      <seq>ttgttttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56993" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56694" g_stop="56655" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="478" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56694" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTGTTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304210" ref_strand="-" ref_description="SGN-E304210 	[cLEX-6-O23]">
      <seq>tttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaagaaaaatctcgagagggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56464" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55759" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="425"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304210" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304210" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E200370" ref_strand="-" ref_description="SGN-E200370 	[cLEC-1-A21]">
      <seq>tttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56464" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55759" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="424"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E200370" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200370" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E339873" ref_strand="+" ref_description="SGN-E339873 	[cTOF-3-G10]">
      <seq>agatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56379" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56079" g_stop="55759" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E339873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56079" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E308597" ref_strand="+" ref_description="SGN-E308597 	[cLEY-21-O14]">
      <seq>ttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56229" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55929" g_stop="55759" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E308597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55929" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E212592" ref_strand="+" ref_description="SGN-E212592 	[cLEC-74-D24]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55761" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="637" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E212592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304911" ref_strand="+" ref_description="SGN-E304911 	[cLEX-10-M22]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattaggatcttttattcatgccaatgaaataattataggattagtggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="651" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304911" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGGATCTTTTATTCATGCCAATGAAATAATTATAGGATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248052" ref_strand="+" ref_description="SGN-E248052 	[cLEF-47-D7]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="645" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E306240" ref_strand="+" ref_description="SGN-E306240 	[cLEY-13-D16]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57148" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="628" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="642"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E306240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247679" ref_strand="+" ref_description="SGN-E247679 	[cLEF-42-K3]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247679" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247504" ref_strand="+" ref_description="SGN-E247504 	[cLEF-42-I19]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E271593" ref_strand="+" ref_description="SGN-E271593 	[cLEM-23-P9]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="644" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E271593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245018" ref_strand="+" ref_description="SGN-E245018 	[cLEF-2-L6]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaagaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgggatatctttcttttattagtatcttttattcatgcaaatgaaataattatggtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="643" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245018" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAAGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGGATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247426" ref_strand="+" ref_description="SGN-E247426 	[cLEF-46-L24]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="643" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="654"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247426" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245714" ref_strand="+" ref_description="SGN-E245714 	[cLEF-48-E20]">
      <seq>agaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaaacttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57158" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="637" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="647"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245714" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAACTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E543993" ref_strand="-" ref_description="SGN-E543993 	[TUS-66-B14]">
      <seq>actccttccgccgcagggttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaggttaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57100" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56800" g_stop="56655" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="578" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E543993" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543993" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56800" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>ACTCCTTCCGCCGCAGGGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304780" ref_strand="+" ref_description="SGN-E304780 	[cLEX-10-C21]">
      <seq>tctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57013" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56713" g_stop="56655" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="491" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="501"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56713" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E201474" ref_strand="+" ref_description="SGN-E201474 	[cLEC-4-E10]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctcccgttactcatcggagattttcgatcaacgagaaaagagaatttattgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttggtgcttataaattttaagcttatcgttatatctttctttcattagtatcttgtatccatgcaaatgaaataatcatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E201474" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCCGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTATTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGGTGCTTATAAATTTTAAGCTTATCGTTATATCTTTCTTTCATTAGTATCTTGTATCCATGCAAATGAAATAATCATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E203483" ref_strand="+" ref_description="SGN-E203483 	[cLEC-15-N15]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaaagctattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E203483" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAAGCTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E209179" ref_strand="+" ref_description="SGN-E209179 	[cLEC-38-N19]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="499"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E209179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E551160" ref_strand="-" ref_description="SGN-E551160 	[TUS-55-I7]">
      <seq>tccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56977" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56677" g_stop="56655" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="455" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E551160" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551160" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56677" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247928" ref_strand="+" ref_description="SGN-E247928 	[cLEF-47-B20]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttggccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgccaatgaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55767" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="641" r_length="430" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247928" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTAT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTGGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCCAATGAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248085" ref_strand="+" ref_description="SGN-E248085 	[cLEF-47-N21]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="631" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248085" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249540" ref_strand="+" ref_description="SGN-E249540 	[cLEF-56-B22]">
      <seq>cgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57147" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56847" g_stop="56655" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="621" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="631"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56847" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E370690" ref_strand="-" ref_description="SGN-E370690 	[TUS-28-D4]">
      <seq>ccgatctcgatatcataataaacaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgatgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaatacttatagtaaaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57052" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56752" g_stop="56655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="526" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="547"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E370690" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370690" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56752" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CCGATCTCGATATCATAATAAACAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGATGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATACTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303343" ref_strand="+" ref_description="SGN-E303343 	[cLEX-2-G2]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55771" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="639" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247681" ref_strand="+" ref_description="SGN-E247681 	[cLEF-42-K7]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55771" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="627" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E302584" ref_strand="+" ref_description="SGN-E302584 	[cLEX-1-O18]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggggaagacttcatgggtgccagatccagttaccggatactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgccatatctttcttttattagcatcttttattcatgcaaatgaaataatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57161" stop="55473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55773" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="631" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E302584" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGGGAAGACTTCATGGGTGCCAGATCCAGTTACCGGATACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGCCATATCTTTCTTTTATTAGCATCTTTTATTCATGCAAATGAAATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E308515" ref_strand="+" ref_description="SGN-E308515 	[cLEY-21-H21]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57161" stop="55477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55777" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="627" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E308515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303877" ref_strand="+" ref_description="SGN-E303877 	[cLEX-4-K3]">
      <seq>agagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttggatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57152" stop="55477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56852" g_stop="56655" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55777" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="619" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56852" e_stop="56655"/>
          <exon e_start="56196" e_stop="55777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTT-GATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</genome_strand>
        <mrna_strand>AGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E236124" ref_strand="+" ref_description="SGN-E236124 	[cLED-16-K10]">
      <seq>tgcagtggcatcactaggtgcagtttccggtgtatcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctacggttactcatcggagattttcgatcaacgagaaaagagaatttattgaaggaactgttttatcagaaaaatatagcagcgtgaaatttactcgtgctttgctgcttttaaatcttaagcttattgttatatctttcttttattagtatcttttattcatgcgaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="56487" stop="55478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56187" g_stop="55778" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E236124" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56187" e_stop="55778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAAT</genome_strand>
        <mrna_strand>TGCAGTGGCATCACTAGGTGCAGTTTCCGGTGTATCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTACGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTATTGAAGGAACTGTTTTATCAGAAAAATATAGCAGCGTGAAATTTACTCGTGCTTTGCTGCTTTTAAATCTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCGAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E306482" ref_strand="+" ref_description="SGN-E306482 	[cLEX-13-A10]">
      <seq>aagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57169" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="624" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E306482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246493" ref_strand="+" ref_description="SGN-E246493 	[cLEF-45-A23]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgccaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="611" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246493" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATG-CAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245224" ref_strand="+" ref_description="SGN-E245224 	[cLEF-44-B1]">
      <seq>gagagtcgaagctacagaatttcagttcgcccctggggaagcgccatatccaaactccttccgccgcancgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57153" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="608" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245224" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCCCTGGGGAAGCGCCATATCCAAACTCCTTCCGCCGCANCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247582" ref_strand="+" ref_description="SGN-E247582 	[cLEF-42-H23]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="611" r_length="408" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247582" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247976" ref_strand="+" ref_description="SGN-E247976 	[cLEF-47-C11]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccgtagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57153" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="607" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247976" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCGTAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247163" ref_strand="+" ref_description="SGN-E247163 	[cLEF-46-J5]">
      <seq>agctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57144" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56844" g_stop="56655" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="598" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56844" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>AGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246762" ref_strand="+" ref_description="SGN-E246762 	[cLEF-45-F12]">
      <seq>gaactagttctctctaagttcgccggagaaagagagtcgaagcgtggagaatttcagttcgcgcgctgcggaagctccatagccaaactgcttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgggctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57180" stop="55490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="232" r_length="220" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55790" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="639" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246762" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGC-TACAGAATTTCAGTTCGC-CGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCA</genome_strand>
        <mrna_strand>TCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCGTGGAGAATTTCAGTTCGCGCGCTGCGGAAGCTCCATAGCCAAACTGCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGGGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E211265" ref_strand="+" ref_description="SGN-E211265 	[cLEC-70-C12]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaagggactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaatttaagcttattggtatatctttcttttattagnatcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55792" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="615" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E211265" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGGACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAA-TTTAAGCTTATTGGTATATCTTTCTTTTATTAGNATCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E391991" ref_strand="+" ref_description="SGN-E391991 	[TUS-34-C3]">
      <seq>cgcctgagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggttatatctttcttttattagaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57164" stop="55495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55795" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E391991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATT-GTTATATCTTTCTTTTATTAGTATCTTTT</genome_strand>
        <mrna_strand>CGCCTGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAG-AAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTTATATCTTTCTTTTATTAGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245977" ref_strand="+" ref_description="SGN-E245977 	[cLEF-51-O10]">
      <seq>aagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaanttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57033" stop="55504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56733" g_stop="56655" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="472" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56733" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>AAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAANTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245701" ref_strand="+" ref_description="SGN-E245701 	[cLEF-48-A20]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55807" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="604" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245701" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATC---ATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E270743" ref_strand="+" ref_description="SGN-E270743 	[cLEM-6-D20]">
      <seq>aaagagagtcgaagctacagaatttcagttcggcgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatataacagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57156" stop="55509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55809" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="590" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E270743" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGGCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAACAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E281688" ref_strand="+" ref_description="SGN-E281688 	[cLER-14-P21]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57163" stop="55518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55821" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="585" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="600"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E281688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E374905" ref_strand="+" ref_description="SGN-E374905 	[TUS-15-A17]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55842" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="572" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E374905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E276413" ref_strand="+" ref_description="SGN-E276413 	[cLEN-17-B9]">
      <seq>accctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57174" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="566" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E276413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E308396" ref_strand="+" ref_description="SGN-E308396 	[cLEY-25-E21]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="558" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E308396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245819" ref_strand="+" ref_description="SGN-E245819 	[cLEF-48-K14]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="557" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E296389" ref_strand="+" ref_description="SGN-E296389 	[cLET-19-L13]">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57176" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="565" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E296389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E296530" ref_strand="+" ref_description="SGN-E296530 	[cLET-19-L13]">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57176" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="565" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E296530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303800" ref_strand="+" ref_description="SGN-E303800 	[cLEX-4-O24]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57170" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="559" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="572"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E311604" ref_strand="+" ref_description="SGN-E311604 	[cLEZ-9-G21]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55856" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="553" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E311604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTC</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E200369" ref_strand="+" ref_description="SGN-E200369 	[cLEC-1-A21]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgcccgtgaatctcggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaagaactgttttatcagaaaaatatagcagtgtgaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55859" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="539" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E200369" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCG-CCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCCGTGAATCT-CGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAAGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E305844" ref_strand="+" ref_description="SGN-E305844 	[cLEX-14-F10]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactggtttatcagaaaaatatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55871" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="543" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E305844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGGTTTATCAGAAAAATATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E294074" ref_strand="+" ref_description="SGN-E294074 	[cLET-13-O5]">
      <seq>tgaccctaagttcgccggagaaagagagtcttagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgacaatctttgaagctgcgccgctgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57176" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="547" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E294074" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>TGACCCTAAGTTCGCCGGAGAAAGAGAGTCTTAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGACAATCTTTGAAGCTGCGCCGCTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304209" ref_strand="+" ref_description="SGN-E304209 	[cLEX-6-O23]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaaattagtgaagggactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="539" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304209" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAAATTAGTGAAGGGACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247176" ref_strand="+" ref_description="SGN-E247176 	[cLEF-46-D14]">
      <seq>tcgccggataaagagagtcgaagctacagaagggcagttggccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="536" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247176" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>TCGCCGGATAAAGAGAGTCGAAGCTACAGAAGGGCAGTTGGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246773" ref_strand="+" ref_description="SGN-E246773 	[cLEF-45-J18]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="535" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303905" ref_strand="+" ref_description="SGN-E303905 	[cLEX-4-C18]">
      <seq>gaggagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggaccaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57154" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="530" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303905" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGA-CAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAG-GAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACCAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248954" ref_strand="+" ref_description="SGN-E248954 	[cLEF-49-H8]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="527" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245301" ref_strand="+" ref_description="SGN-E245301 	[cLEF-44-B13]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57153" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="523" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245327" ref_strand="+" ref_description="SGN-E245327 	[cLEF-44-B4]">
      <seq>gagtcgaagctacagaatttcagttctccgctgcgggggcgcgatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttactgaaggaactgttttatcagaaaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57151" stop="55574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55874" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="520" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245327" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATA</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCTCCGCTGCGGGGGCGCGATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTACTGAAGGAACTGTTTTATCAGAAAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249386" ref_strand="+" ref_description="SGN-E249386 	[cLEF-50-D9]">
      <seq>gaggttcgccggagaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagaatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagaaaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57169" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="541" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249386" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAG-ACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG-ATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAGGTTCGCCGGAGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGAATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAAAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E312650" ref_strand="+" ref_description="SGN-E312650 	[cLEZ-20-F24]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="535" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E312650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E271534" ref_strand="+" ref_description="SGN-E271534 	[cLEM-23-C22]">
      <seq>ttcgcccgagaaagagagtcgaagctacagaatttcagttcgcccgctgcggaagctccatagcccaacctccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaacctctaagacctctctctgctttcgtctcccacctccgtttctgcttttctcagcaggcgtggatatgccagcggcatcacaaggtgccagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggaccagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="541" r_length="324" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E271534" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCG-CCGCTGCGGAAGCTCCATAG-CCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAA-CTCTAAGA-CTCTCTCTGCTTTCGTCTCCGA-CTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATG-CAGCGGCATCACAAGGTG-CAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>TTCGCCCGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCCGCTGCGGAAGCTCCATAGCCCAACCTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACCTCTAAGACCTCTCTCTGCTTTCGTCTCCCACCTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCCAGCGGCATCACAAGGTGCCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACCAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E279698" ref_strand="+" ref_description="SGN-E279698 	[cLER-5-H5]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtgtccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcaggttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagataccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="533" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E279698" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTGTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGGTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGATACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249222" ref_strand="+" ref_description="SGN-E249222 	[cLEF-50-B19]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="526" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAG-ACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245272" ref_strand="+" ref_description="SGN-E245272 	[cLEF-44-B14]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagcgccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57151" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="519" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCGCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246914" ref_strand="+" ref_description="SGN-E246914 	[cLEF-41-B24]">
      <seq>agaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttaatgaaggaactgttttatcagaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57158" stop="55576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55876" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="525" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATA</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAATGAAGGAACTGTTTTATCAGAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247331" ref_strand="+" ref_description="SGN-E247331 	[cLEF-46-B18]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57151" stop="55577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55877" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="517" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAT</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244373" ref_strand="+" ref_description="SGN-E244373 	[cLEF-3-I12]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcaggttccggtgtatcagaaggagggccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggagaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55891" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="517" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244373" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGGTTCCGGTGTATCAGAAGGAGGGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGAGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244320" ref_strand="+" ref_description="SGN-E244320 	[cLEF-37-M21]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="512" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E237667" ref_strand="+" ref_description="SGN-E237667 	[cLED-19-I12]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57170" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="511" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E237667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E294601" ref_strand="+" ref_description="SGN-E294601 	[cLET-22-N1]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57163" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="504" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E294601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304564" ref_strand="+" ref_description="SGN-E304564 	[cLEX-11-F23]">
      <seq>gagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57159" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="500" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303228" ref_strand="+" ref_description="SGN-E303228 	[cLEX-5-K17]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgntgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="498" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303228" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGNTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E279885" ref_strand="+" ref_description="SGN-E279885 	[cLER-8-I3]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgcccgtgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57156" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="497" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E279885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCCGTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E281949" ref_strand="+" ref_description="SGN-E281949 	[cLES-2-N4]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57148" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="489" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E281949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E201665" ref_strand="+" ref_description="SGN-E201665 	[cLEC-11-D4]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55903" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="511" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E201665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAG</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247037" ref_strand="+" ref_description="SGN-E247037 	[cLEF-41-D1]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctttttgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgctccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57175" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55905" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="513" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247037" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTT</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTTTTTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCTCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E276508" ref_strand="+" ref_description="SGN-E276508 	[cLEN-17-G9]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttccttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgcttttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55908" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="492" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E276508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCCTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTTTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E246408" ref_strand="+" ref_description="SGN-E246408 	[cLEF-52-A20]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgntgatctccggttactcatcggagantttcgatcaacgagaaaagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57151" stop="55608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55908" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="486" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E246408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGNTGATCTCCGGTTACTCATCGGAGANTTTCGATCAACGAGAAAAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247558" ref_strand="+" ref_description="SGN-E247558 	[cLEF-42-O8]">
      <seq>ctaagttcgccggagaaagagagtcgaagctccagaatttcagttcgccgctgcggaagcctccatagcccaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55909" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="506" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247558" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAG-CTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTCCAGAATTTCAGTTCGCCGCTGCGGAAGCCTCCATAGCCCAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247851" ref_strand="+" ref_description="SGN-E247851 	[cLEF-47-M21]">
      <seq>accctaagttcgccggagaaagagagtcgaagctgcagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctcccggtactcatncgagattttcgatcaacgagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57174" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55910" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="507" r_length="287" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</genome_strand>
        <mrna_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTGCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCCGGTACTCATNCGAGATTTTCGATCAACGAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304198" ref_strand="+" ref_description="SGN-E304198 	[cLEX-6-M23]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcggctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagcgccaaggagcaacgtgatgatgcaaaagaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttactcatcggagattttcgatcaacgagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55910" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="501" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304198" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAA-AAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGGCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGCGCCAAGGAGCAACGTGATGATGCAAAAGAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E208430" ref_strand="+" ref_description="SGN-E208430 	[cLEC-37-P21]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatgggagattttcgatcaacgagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57155" stop="55612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55912" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="486" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E208430" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAG</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATGGGAGATTTTCGATCAACGAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E208983" ref_strand="+" ref_description="SGN-E208983 	[cLEC-38-I20]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcacaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccagaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57170" stop="55616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55916" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="497" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E208983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGA</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCACAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCAGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248242" ref_strand="+" ref_description="SGN-E248242 	[cLEF-55-I21]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57151" stop="55623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55923" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="471" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATC</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304484" ref_strand="+" ref_description="SGN-E304484 	[cLEX-12-N10]">
      <seq>ctaagttcgccggataaagagagtcgaagctacagaatttcagatcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagattccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgagaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55924" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="490" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304484" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGAT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGATAAAGAGAGTCGAAGCTACAGAATTTCAGATCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGATTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAGAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E243091" ref_strand="+" ref_description="SGN-E243091 	[cLEF-15-I5]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcacgcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcacaaaagtggacaggaatcggtgaagacttcatgggtgccagatccaggtaccggctactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgtggatctccggggactcatcggagatggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57161" stop="55626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55926" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="478" r_length="271" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E243091" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCG</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCACAAAAGTGGACAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGGTACCGGCTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTGGATCTCCGGGGACTCATCGGAGATGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E335171" ref_strand="+" ref_description="SGN-E335171 	[cTOE-1-L5]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaaagatgctgtgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55940" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="469" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E335171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGG-AAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTC</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAAGATGCTG-TGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244980" ref_strand="+" ref_description="SGN-E244980 	[cLEF-2-H15]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgcatgtgaaacacagatctggaagccaactgaaaatctttgaagctgcgccgttgatctccggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55942" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="459" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244980" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG-CAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTAC</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCATGTGAAACACAGATCTGGAAGCCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E296185" ref_strand="+" ref_description="SGN-E296185 	[cLET-24-A23]">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57176" stop="55652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55952" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="467" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E296185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGAT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E247963" ref_strand="+" ref_description="SGN-E247963 	[cLEF-47-N22]">
      <seq>tcgccggagaaagagagtcgaagctgcagaatttcagtgcgccgctgcggaagctccatagccaaactccttccgccgcagcggtcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctacgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagactacggtgtagcaaaaggagtgccacggagcaacgtgatgatgcacaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagtgaccggttactataggccggaaggacaagcaaatgagattgacgctggtgagctccggaagatgctgtggaaacacagatctggaagcaactgaaaatctgtgaagctgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55958" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="450" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E247963" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCC</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTGCAGAATTTCAGTGCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGGTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTACGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGACTACGGTGTAGCAAAAGGAGTGCCACGGAGCAACGTGATGATGCACAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTGACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGGTGAGCTCCGGAAGATGCTGTGGAAACACAGATCTGGAAGCAACTGAAAATCTGTGAAGCTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E367872" ref_strand="+" ref_description="SGN-E367872 	[TUS-22-A17]">
      <seq>gccggagaaagagaggcgaagctacagaatctcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggttatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaggcaaatgacattgacgctgctgagctccggaagacgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57163" stop="55661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55961" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="445" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E367872" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGC</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGGCGAAGCTACAGAATCTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGTTATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAGGCAAATGACATTGACGCTGCTGAGCTCCGGAAGACGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248178" ref_strand="+" ref_description="SGN-E248178 	[cLEF-55-E20]">
      <seq>ggttcgccggagaaagagagcctaagctacataattctagggcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55963" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="448" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E248178" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</genome_strand>
        <mrna_strand>GGTTCGCCGGAGAAAGAGAGCCTAAGCTACATAATTCTAGGGCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E301298" ref_strand="+" ref_description="SGN-E301298 	[cLEW-24-J2]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55963" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="446" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E301298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E304793" ref_strand="+" ref_description="SGN-E304793 	[cLEX-10-A16]">
      <seq>gcctttttccctcctcattctccatctctatatatacttccccattctctcctccatttctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57248" stop="55668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56948" g_stop="56655" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55968" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="523" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E304793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56948" e_stop="56655"/>
          <exon e_start="56196" e_stop="55968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTG</genome_strand>
        <mrna_strand>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E243287" ref_strand="+" ref_description="SGN-E243287 	[cLEF-12-P19]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55971" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="437" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E243287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E337946" ref_strand="+" ref_description="SGN-E337946 	[cTOE-14-A5]">
      <seq>gaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57137" stop="55671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56837" g_stop="56655" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55971" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="409" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E337946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56837" e_stop="56655"/>
          <exon e_start="56196" e_stop="55971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</genome_strand>
        <mrna_strand>GAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E295294" ref_strand="+" ref_description="SGN-E295294 	[cLET-20-P11]">
      <seq>tcaccctaagttcgccggagaaagagagtctaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccggcgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57176" stop="55672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55972" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="447" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E295294" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATC</genome_strand>
        <mrna_strand>TCACCCTAAGTTCGCCGGAGAAAGAGAGTCTAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGGCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245071" ref_strand="+" ref_description="SGN-E245071 	[cLEF-13-B21]">
      <seq>agttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57168" stop="55675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55975" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="436" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAA</genome_strand>
        <mrna_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E301387" ref_strand="+" ref_description="SGN-E301387 	[cLEW-24-H18]">
      <seq>ttcgccggagaaagagagtcggggctgcttaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagttgccggtgtaccaaaaggagtgcctacgagcaccgtgatgatgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccaattaccggctactataagccggaaagacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55984" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="425" r_length="213" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E301387" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGGGGCTGCTTAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTGCCGGTGTACCAAAAGGAGTGCCTACGAGCACCGTGATGATGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAATTACCGGCTACTATAAGCCGGAAAGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244843" ref_strand="+" ref_description="SGN-E244843 	[cLEF-2-G6]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgcgatgatgcaaaaaaggggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55988" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="420" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244843" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGCGATGATGCAAAAAAGGGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244946" ref_strand="+" ref_description="SGN-E244946 	[cLEF-2-A14]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55988" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="420" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244342" ref_strand="+" ref_description="SGN-E244342 	[cLEF-3-G1]">
      <seq>agaaagagagtctaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgttttcgtctccgactccgattctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagcttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcagaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggatactataggccggaaggacaagcaaatgagattgacgctgctgagctgcggaagatgctgttgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57158" stop="55695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55995" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="406" r_length="202" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244342" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACAC</genome_strand>
        <mrna_strand>AGAAAGAGAGTCTAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGTTTTCGTCTCCGACTCCGATTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGCTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAGAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGATACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTGCGGAAGATGCTGTTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E337606" ref_strand="+" ref_description="SGN-E337606 	[cTOE-11-L1]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56004" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="405" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E337606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTG</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E288181" ref_strand="+" ref_description="SGN-E288181 	[cLES-7-P15]">
      <seq>ttcgccggagaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttgcgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagttaccgggtactataagccggaaggacaagcgaatgaattgacgctgtgagctccggagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57166" stop="55705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56005" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="400" r_length="189" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E288181" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCT</genome_strand>
        <mrna_strand>TTCGCCGGAG-AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTGCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTTACCGGGTACTATAAGCCGGAAGGACAAGCGAATGA-ATTGACGCTG-TGAGCTCCGG-AGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E396536" ref_strand="+" ref_description="SGN-E396536 	[TUS-24-G7]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaaaacttcatgggtgccagatccagttaccggttactataggccgggaagacaagcaaaatgaattgacactgctgagctccggaagaggggggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57172" stop="55707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56010" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="405" r_length="187" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E396536" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="56010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAAACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGGAAGACAAGCAAAATGAATTGACACTGCTGAGCTCCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E370691" ref_strand="+" ref_description="SGN-E370691 	[TUS-28-D4]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcttatgagattgacgctgttgagctgcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57156" stop="55710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56010" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="389" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E370691" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="56010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCTTATGAGATTGACGCTGTTGAGCTGCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244472" ref_strand="+" ref_description="SGN-E244472 	[cLEF-3-J1]">
      <seq>aggaattcggcacgaggaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatggtgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57169" stop="55715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="219" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56015" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="401" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244472" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="56015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCC</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGGTGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244911" ref_strand="+" ref_description="SGN-E244911 	[cLEF-2-A5]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57161" stop="55757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56057" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="347" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="56057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E303119" ref_strand="+" ref_description="SGN-E303119 	[cLEX-5-K23]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57172" stop="55785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56085" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="330" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E303119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="56085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E243096" ref_strand="+" ref_description="SGN-E243096 	[cLEF-15-M14]">
      <seq>ctaagttcgccggagaaatagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactcccatctccatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgaagcaaaaggagtgccttggagcaacgtgatgatgccacaaagtggagaggaatcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56096" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="318" r_length="101" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E243096" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="56096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAATAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCCATCTCCATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGAAGCAAAAGGAGTGCCTTGGAGCAACGTGATGATGCCACAAAGTGGAGAGGAATCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E272622" ref_strand="+" ref_description="SGN-E272622 	[cLEM-21-P7]">
      <seq>atatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57043" stop="55802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56743" g_stop="56655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56102" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="184" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E272622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56743" e_stop="56655"/>
          <exon e_start="56196" e_stop="56102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAAT</genome_strand>
        <mrna_strand>ATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249099" ref_strand="+" ref_description="SGN-E249099 	[cLEF-49-N7]">
      <seq>tcgccggttaaagagagtcgaagctacacaattctagggtgccgctgcggaagctccatagcccaactccttccgccgcagcgttcttattcacaaattctcttgctccgactccgatctcgatatcataataaccaatggcgaattcaagctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcaacaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57165" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="304" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249099" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="56104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</genome_strand>
        <mrna_strand>TCGCCGGTTAAAGAGAGTCGAAGCTACACAATTCTAGGGTGCCGCTGCGGAAGCTCCATAGCCCAACTCCTTCCGCCGCAGCGTTCTTATTCACAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAACCAATGGCGAATTCAAGCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245472" ref_strand="+" ref_description="SGN-E245472 	[cLEF-43-M9]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57157" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="296" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="56104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E337620" ref_strand="+" ref_description="SGN-E337620 	[cTOE-11-P23]">
      <seq>gagagtcgaagctacagaatttcagttcgccgttgcggaagctccatagcctaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttcctgtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57153" stop="55808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56108" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="288" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E337620" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="56108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGTTGCGGAAGCTCCATAGCCTAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCTGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E249508" ref_strand="+" ref_description="SGN-E249508 	[cLEF-56-D19]">
      <seq>ctaagttcgccggagaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57171" stop="55844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56144" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="271" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E249508" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="56144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAG</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E297291" ref_strand="+" ref_description="SGN-E297291 	[cLET-29-M4]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctggttttctcaacaggcgtggatatgccgcggcatcacaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57163" stop="55868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56168" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="238" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E297291" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="56168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTG</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGGTTTTCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCCGCGGCATCACAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E243577" ref_strand="+" ref_description="SGN-E243577 	[cLED-34-C8]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57170" stop="55871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56171" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="242" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E243577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="56171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAG</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E245366" ref_strand="+" ref_description="SGN-E245366 	[cLEF-53-B16]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57167" stop="55871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56171" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="239" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E245366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAG</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E244307" ref_strand="+" ref_description="SGN-E244307 	[cLEF-37-K5]">
      <seq>cgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctggtttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57147" stop="55881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56847" g_stop="56655" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56181" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="209" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E244307" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56847" e_stop="56655"/>
          <exon e_start="56196" e_stop="56181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCG</genome_strand>
        <mrna_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGGTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E286063" ref_strand="+" ref_description="SGN-E286063 	[cLES-13-A6]">
      <seq>tttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcgtattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgatctttctctaactctaagactctctctgctttcgtctccgactccggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="57134" stop="56369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56834" g_stop="56669" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E286063" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56834" e_stop="56669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCT</genome_strand>
        <mrna_strand>TTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCGTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGATCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 	[TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="61962" stop="61067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61662" g_stop="61341" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61662" e_stop="61341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCAAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 	[TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="61962" stop="61067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61662" g_stop="61372" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61662" e_stop="61372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E209693" ref_strand="+" ref_description="SGN-E209693 	[cLEC-54-P24]">
      <seq>tcgtgcccagaaatttctggagaaattaacgactactgaagtttctacctcaccggcgaaagttgcagctaggcgttgacgatcagccatggcggaggcgaaccatgatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcaaggttttgctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62354" stop="67221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62654" g_stop="62853" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="373" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="467" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E209693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62654" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG</genome_strand>
        <mrna_strand>TCGTGCCCAGAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTTGACGATCAGCCATGGCGGAGGCGAACCATGATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAAGGTTTTGCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E310722" ref_strand="+" ref_description="SGN-E310722 	[cLEZ-15-C20]">
      <seq>aaaaatttctggagaaattaacgactactgaagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62362" stop="68111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62662" g_stop="62853" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="365" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="459" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="548" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67811" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="577" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E310722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62662" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGC</genome_strand>
        <mrna_strand>AAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E326387" ref_strand="+" ref_description="SGN-E326387 	[cTOC-14-G23]">
      <seq>aagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagaatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62392" stop="68111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62692" g_stop="62853" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="336" r_length="174" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="430" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="519" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67811" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="548" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E326387" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62692" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAG-ATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGC</genome_strand>
        <mrna_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGAATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E251243" ref_strand="+" ref_description="SGN-E251243 	[cLEG-10-M23]">
      <seq>aagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62392" stop="68106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62692" g_stop="62853" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="335" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="429" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67806" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="542" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E251243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62692" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGT</genome_strand>
        <mrna_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E311900" ref_strand="+" ref_description="SGN-E311900 	[cTOA-15-I4]">
      <seq>ttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62416" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62716" g_stop="62853" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="311" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="405" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67802" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="514" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E311900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62716" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACAT</genome_strand>
        <mrna_strand>TTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E369720" ref_strand="+" ref_description="SGN-E369720 	[TUS-25-G3]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgtagtaccggatgctcctgcttcgtcaatagcatatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62417" stop="68159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62717" g_stop="62853" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67860" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="570" r_length="77" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E369720" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62717" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTT</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGTAGTACCGGATGCTCCTGCTTCGTC-AATAGCATATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E248992" ref_strand="+" ref_description="SGN-E248992 	[cLEF-49-E17]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62417" stop="68126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62717" g_stop="62853" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67826" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="537" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E248992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62717" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E241403" ref_strand="+" ref_description="SGN-E241403 	[cLED-28-P21]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62417" stop="68123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62717" g_stop="62853" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67823" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="534" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E241403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62717" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGT</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E272699" ref_strand="+" ref_description="SGN-E272699 	[cLEM-21-C14]">
      <seq>aggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="62424" stop="68126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62724" g_stop="62853" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62952" g_stop="63124" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="303" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66825" g_stop="66918" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="397" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67229" g_stop="67317" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="486" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67783" g_stop="67826" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="530" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E272699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62724" e_stop="62853"/>
          <exon e_start="62952" e_stop="63124"/>
          <exon e_start="66825" e_stop="66918"/>
          <exon e_start="67229" e_stop="67317"/>
          <exon e_start="67783" e_stop="67826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</genome_strand>
        <mrna_strand>AGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E392622" ref_strand="-" ref_description="SGN-E392622 	[TUS-35-J14]">
      <seq>aaaaaaaagattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctatttgttgtgttaggtgggtgaggtgtttatagaggttggtagaggtggatgtatcaatttaagagtggataaatttttgtacgagtcaatttatttgtctgattttgaatcgatatgaaatttaaaaaagtcaacataactatctaaaatagagagattatttttgaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82371" stop="56761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82073" g_stop="81737" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81736" i_stop="80063" i_length="1674">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80062" g_stop="80044" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="357" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E392622" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392622" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82073" e_stop="81737"/>
          <exon e_start="80062" e_stop="80044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAA-ATAACTATCTAAAATAGAGAGATTATTTTTGATGTACCCTTAATTTCAAATTAAAGATAGGTAAATTGTATTAGTATATTTTATAATCTTGTAATGTTAAATATGTAAAATAAAGAGTTATTTTTAATAGATTGTTAATTTGAAATGTGTACTAAATTTTGTAAATCTTAAATTGAAGATATGTAGATTTTATCAATGTAATCTTATACTGTTAAACGTGTAATACAAAAAGTAAGAATCAAATCATTATTACTCCCTCCATTTCATAATAATTTAATTTTTGACGCATCTCACAACCTTTAAGAAAAGTTTAAGACATAAATTAAACATAGTTTTCTATTTTTACCCTTATTAATTATCAACTTTATAATTAAAATAATTAAATATTAATTAATTACTAATTTCAATATTAACTAATGAAGTATAAAATTGAATGAACACTATAAAGTAATCTTAAAATTAAACACTTAAATTAATCTGAAAAATAAAAAATACCTCAAAATTAATATGAAATGACGGGAGTAAAAATGAAAAAAACACTAAAACTAACCTATTGTAATGGATGGACTAATTGTTTTGATATTAGAAATTTACAAAAGGGAATAAACTCATTCTATTTAATTTTTTTTTTTTCATTTCTAATCTTAAACTCAAAATCTTTGATCAAAGTATTCCCTCCTTTTAAATTCCTTTATTTCGTTTTTATTTGATACAAATTTAAAAAAGTAAAAAGAAATAATTCAAATCTTGCTATATTAATATATAGATATATAAAATATCATTTAATTTTTTAATTATAAACATATTATGTGCTTAAAATAAAACAAAAAAATTACTAAAAAATATCTATAAATAATTTAAAACGAATAGAATAGAAAAATCTCGACTACCTAACCAGGTTTGGTTGGCTTTGTTAAATTCTCCCACCTAATTTTGTGTACATAATGGATTGGTGAGCCTCACAGAGCCAGGGGTTGAAAGTTGTATTCTCTGGTCGTTAGATAAGAAACGCTTTTCAAATCTAAACCAAAAGAGTTTGACTTCAAAATCAAGTCTACTAGGTACGGAATCACGTTTGTTAAGAGTATTTTATCATTAATGTGGGATCGAATTTAGAACATGTTTAGATTGGCATAAAAAAAAGAAGTAGATTTTAAATAAAAAATAAAAAGTCAAATTTAAATAATATGCGAGTCAAAAAAATAAAAATTAGAGGAGCCTACTTTTAGTTTTTAATTTATTTTACATTAGTTTTTAATCTTGCCAAACAATTCCTAACTTCTTTTTATATTTGTCAAACACTTTTTCAAAAGTAAAAAACCTGACTTAAAAGTAGGTTTGACCAACTTTTATATTAATCGAAACCCGTTATCCTCTTAGAAGGTGTTTGATTTGGCTTAAAGTTGATCAAACTTACTTTTAAGTCAGTTTTTGAATTCTGAAAGTGTTTGACAGTAGAATCTGAAGTTGTAAACCTTGATATCACCTGATGGATTATAAGAACACACAAAGCATCACATAACCAACTCCAAAACAGTAGTCATTGAAAACCACTCAAGTTGGCCAAACCAAAAAGACATGAAATGTTAGATGGCACCAGCTGAAATTGCAAGGAAAGGTAGCAGACGTTCTTACTGCTTACAGGCTACAGCAATCGTTTATATAATCAATCAACTATACGTCAATTCTAAATGTGACGACTTACAGAGGCATGTAAAAACACATG</genome_strand>
        <mrna_strand>AAAAAAAAGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAAAAAGTCAACATAACTATCTAAAATAGAGAGATTATTTTTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E201782" ref_strand="+" ref_description="SGN-E201782 	[cLEC-11-F9]">
      <seq>aacaatcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattaaggaaatgggttggaaggattgtggataaagcaagtgaaattgaagctatcggtaaaatgggtgtctgctgttgttcttcttgaggtgtttgggcttctgagttatcggaaaattgattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82709" stop="81601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82409" g_stop="81901" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E201782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82409" e_stop="81901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</genome_strand>
        <mrna_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E283968" ref_strand="+" ref_description="SGN-E283968 	[cLER-13-P5]">
      <seq>acaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81650" stop="82581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81950" g_stop="82281" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E283968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81950" e_stop="82281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</genome_strand>
        <mrna_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E253410" ref_strand="+" ref_description="SGN-E253410 	[cLEG-24-M16]">
      <seq>accaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81655" stop="82787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81955" g_stop="82487" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E253410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81955" e_stop="82487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</genome_strand>
        <mrna_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E338462" ref_strand="+" ref_description="SGN-E338462 	[cTOE-15-D11]">
      <seq>gagggtcgcttatcttcatcttcttcctctgattctgtccatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacaccccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctaccaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81686" stop="82846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81981" g_stop="82546" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E338462" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81981" e_stop="82546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACA-CCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTA-CAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</genome_strand>
        <mrna_strand>GAG-GGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTCCATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACCAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E324017" ref_strand="+" ref_description="SGN-E324017 	[cTOC-3-P23]">
      <seq>aagccgtcgcttatgcttcatcttcttgctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81681" stop="82768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81981" g_stop="82468" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E324017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81981" e_stop="82468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTAT-CTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</genome_strand>
        <mrna_strand>AAGCCGTCGCTTATGCTTCATCTTCTTGCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E272873" ref_strand="+" ref_description="SGN-E272873 	[cLEM-25-D3]">
      <seq>ccgtcgcttatcttcatcttcttcctctgattctgtacattactctcaccggggaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagctgacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81684" stop="82887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81984" g_stop="82587" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E272873" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81984" e_stop="82587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</genome_strand>
        <mrna_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTACTCTCACCGGGGAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCTGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E312351" ref_strand="+" ref_description="SGN-E312351 	[cTOA-5-D13]">
      <seq>gtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81686" stop="82844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81986" g_stop="82544" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E312351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81986" e_stop="82544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</genome_strand>
        <mrna_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E306807" ref_strand="+" ref_description="SGN-E306807 	[cLEY-11-C16]">
      <seq>ttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81691" stop="82903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81991" g_stop="82603" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E306807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81991" e_stop="82603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</genome_strand>
        <mrna_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E392372" ref_strand="+" ref_description="SGN-E392372 	[TUS-35-J14]">
      <seq>aatttttcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattgaggaagtgggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82704" stop="81866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82410" g_stop="82166" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E392372" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82410" e_stop="82166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGA</genome_strand>
        <mrna_strand>AATTTTTCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTGAGGAAGTGGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E254133" ref_strand="+" ref_description="SGN-E254133 	[cLEG-34-K1]">
      <seq>ttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="81904" stop="83054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82204" g_stop="82754" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E254133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82204" e_stop="82754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</genome_strand>
        <mrna_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E214506" ref_strand="+" ref_description="SGN-E214506 	[cLEC-77-P10]">
      <seq>tctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataanattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatggtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82040" stop="83114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82340" g_stop="82814" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E214506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82340" e_stop="82814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGAT</genome_strand>
        <mrna_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAANATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E284051" ref_strand="+" ref_description="SGN-E284051 	[cLER-13-O5]">
      <seq>aagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgatggttgatttggggctcaatcctagtgccaccatgggtcagaatggagaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgctgagacttagaaaatttgcagcagaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82293" stop="84691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82593" g_stop="83006" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84306" g_stop="84391" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="500" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E284051" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82593" e_stop="83006"/>
          <exon e_start="84306" e_stop="84391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCA</genome_strand>
        <mrna_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGATGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCTGAGACTTAGAAAATTTGCAGCAGAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E294287" ref_strand="+" ref_description="SGN-E294287 	[cLET-14-D8]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82374" stop="84668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82674" g_stop="83006" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84306" g_stop="84368" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E294287" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82674" e_stop="83006"/>
          <exon e_start="84306" e_stop="84368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E294288" ref_strand="+" ref_description="SGN-E294288 	[cLET-14-D8]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82374" stop="84668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82674" g_stop="83006" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84306" g_stop="84368" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E294288" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82674" e_stop="83006"/>
          <exon e_start="84306" e_stop="84368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E289947" ref_strand="+" ref_description="SGN-E289947 	[cLET-9-L1]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaagctttagggagaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82374" stop="83171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82674" g_stop="82871" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E289947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82674" e_stop="82871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTG</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAAGCTTTAGGGAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E344812" ref_strand="+" ref_description="SGN-E344812 	[cTOF-21-A4]">
      <seq>ggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaacaaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82464" stop="85262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82764" g_stop="83006" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84306" g_stop="84535" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="473" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84536" i_stop="84627" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84628" g_stop="84720" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84721" i_stop="84862" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84863" g_stop="84962" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E344812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82764" e_stop="83006"/>
          <exon e_start="84306" e_stop="84535"/>
          <exon e_start="84628" e_stop="84720"/>
          <exon e_start="84863" e_stop="84962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAG</genome_strand>
        <mrna_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAACA-AAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTC-AAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E284494" ref_strand="-" ref_description="SGN-E284494 	[cLER-16-P2]">
      <seq>ggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcgaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="82635" stop="85389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82935" g_stop="83006" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84306" g_stop="84535" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="302" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84536" i_stop="84627" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84628" g_stop="84720" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84721" i_stop="84862" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84863" g_stop="85090" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="623" r_length="228" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E284494" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284494" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82935" e_stop="83006"/>
          <exon e_start="84306" e_stop="84535"/>
          <exon e_start="84628" e_stop="84720"/>
          <exon e_start="84863" e_stop="85090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAAT</genome_strand>
        <mrna_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCGAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E279534" ref_strand="+" ref_description="SGN-E279534 	[cLER-5-O14]">
      <seq>gaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84010" stop="85393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84310" g_stop="84535" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84536" i_stop="84627" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84628" g_stop="84720" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="319" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84721" i_stop="84862" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84863" g_stop="85093" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="550" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E279534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84310" e_stop="84535"/>
          <exon e_start="84628" e_stop="84720"/>
          <exon e_start="84863" e_stop="85093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</genome_strand>
        <mrna_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E226505" ref_strand="-" ref_description="SGN-E226505 	[cLEL-26-F8]">
      <seq>acttcaagaacgatttctgctgcctctgccaaagaaaaatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtaattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84322" stop="85506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84528" g_stop="84535" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84536" i_stop="84627" i_length="92">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84628" g_stop="84720" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="102" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84721" i_stop="84862" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84863" g_stop="85203" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="443" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="458"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E226505" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84528" e_stop="84535"/>
          <exon e_start="84628" e_stop="84720"/>
          <exon e_start="84863" e_stop="85203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCC-AAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>ACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAAGAAAAATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E226906" ref_strand="-" ref_description="SGN-E226906 	[cLEL-26-F20]">
      <seq>tggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccgaaagtttagctgtggaatgttagagttggactgccattgaattaaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84645" stop="85506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84945" g_stop="85203" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="275"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E226906" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84945" e_stop="85203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGAAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTAAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E390468" ref_strand="+" ref_description="SGN-E390468 	[TUS-40-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgtgatagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataagagaatttgtcgccatttctatcacgcccctctacaatccttcttatgctagtatttatatatttttgatttcatctggaattgaaacaggtgtgataccaaacatacctgtacttgaaatatgtgtgccatgtttgagattaccatccatcttgaacccgccgagagtatccttgagcatcacatgatttactagtgatactcgtttcaatggaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84678" stop="85601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84978" g_stop="85309" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E390468" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84978" e_stop="85309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTGATAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAGAGAATTTGTCGCCATTTCTATCACGCCCCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGGAATTGAAACAGGTGTGATACCAAACATACCTGTACTTGAAATATGTGTGCCATGTTTGAGATTACCATCCATCTTGAACCCGCCGAGAGTATCCTTGAGCATCACATGATTTACTAGTGATACTCGTTTCAATGGAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E390094" ref_strand="+" ref_description="SGN-E390094 	[TUS-17-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84678" stop="85601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84978" g_stop="85308" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E390094" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84978" e_stop="85308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E390607" ref_strand="+" ref_description="SGN-E390607 	[TUS-47-C24]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84678" stop="85601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84978" g_stop="85308" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E390607" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84978" e_stop="85308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E390848" ref_strand="+" ref_description="SGN-E390848 	[TUS-47-C24]">
      <seq>ttttttttttttttgaaatgagtatcaatagtaaatcatctgatgctcaaggatactctccgcgggttcaagatggatggtaatctcaaacatggaacacatatttcaactacaggtatgtttgttatcacacctgtttcaactacagatgaaatcaaaaatatataaatactagcataagaaggattgtaaagcgacttgctagaaatggcgacaaattcttttatgtctcaacacttattgtcaaaagaaaaaatgcttcaattcaatggcagtccaactctaacattccacagctaaacttccggaaaaaataaatcaagctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="85595" stop="84678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85307" g_stop="84978" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E390848" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85307" e_stop="84978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAGTTTACATTGAAATGAGTATCAATAGTAAATCATCTGATGCTCAAGGATACTCTCCGCGGGTTCAAGATGGATGGTAATCTCAAACATGGAACACATATTTCAACTACAGGTATGTTTGTTATCACACCTGTTTCAACTACAGATGAAATCAAAAATATATAAATACTAGCATAAGAAGGATTGTAGAGCGACTTGCTAGAAATGGCGACAAATTCTTTTATGTCTCAACACTTATTGTCAAAAGAAAAAATGCTTCAATTCAATGGCAGTCCAACTCTAACATTCCACAGCTAAACTTCCGGAAAAAATAAATCAAGCTACAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTGAAATGAGTATCAATAGTAAATCATCTGATGCTCAAGGATACTCTCCGCGGGTTCAAGATGGATGGTAATCTCAAACATGGAACACATATTTCAACTACAGGTATGTTTGTTATCACACCTGTTTCAACTACAGATGAAATCAAAAATATATAAATACTAGCATAAGAAGGATTGTAAAGCGACTTGCTAGAAATGGCGACAAATTCTTTTATGTCTCAACACTTATTGTCAAAAGAAAAAATGCTTCAATTCAATGGCAGTCCAACTCTAACATTCCACAGCTAAACTTCCGGAAAAAATAAATCAAGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E390093" ref_strand="+" ref_description="SGN-E390093 	[TUS-17-C23]">
      <seq>ttttttttttacattgaaatgagtatcaatagtaaatcatctgatgctcaaggatactctccgcgggttcaagatggatggtaatctcaaacatggaacacatatttcaactacaggtatgtttgttatcacacctgtttcaactacagatgaaatcaaaaatatataaatactagcataagaaggattgtatagcgacttgctaaaaatggcgacaaattcttttatgtctcaacacttattgtcaaaagaaaaaatgcttcaattcaatggcagtccaactctaacattccacagctaaacttccggaaaaaataaatcaagctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="85601" stop="84678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85301" g_stop="84978" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="331" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E390093" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85301" e_stop="84978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACATTGAAATGAGTATCAATAGTAAATCATCTGATGCTCAAGGATACTCTCCGCGGGTTCAAGATGGATGGTAATCTCAAACATGGAACACATATTTCAACTACAGGTATGTTTGTTATCACACCTGTTTCAACTACAGATGAAATCAAAAATATATAAATACTAGCATAAGAAGGATTGTAGAGCGACTTGCTAGAAATGGCGACAAATTCTTTTATGTCTCAACACTTATTGTCAAAAGAAAAAATGCTTCAATTCAATGGCAGTCCAACTCTAACATTCCACAGCTAAACTTCCGGAAAAAATAAATCAAGCTACAAA</genome_strand>
        <mrna_strand>TTTACATTGAAATGAGTATCAATAGTAAATCATCTGATGCTCAAGGATACTCTCCGCGGGTTCAAGATGGATGGTAATCTCAAACATGGAACACATATTTCAACTACAGGTATGTTTGTTATCACACCTGTTTCAACTACAGATGAAATCAAAAATATATAAATACTAGCATAAGAAGGATTGTATAGCGACTTGCTAAAAATGGCGACAAATTCTTTTATGTCTCAACACTTATTGTCAAAAGAAAAAATGCTTCAATTCAATGGCAGTCCAACTCTAACATTCCACAGCTAAACTTCCGGAAAAAATAAATCAAGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E285047" ref_strand="+" ref_description="SGN-E285047 	[cLER-19-P19]">
      <seq>ttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="84679" stop="85601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84979" g_stop="85308" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E285047" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84979" e_stop="85308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E287536" ref_strand="+" ref_description="SGN-E287536 	[cLES-9-F23]">
      <seq>actgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgcctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90554" stop="87047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90254" g_stop="90196" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87702" g_stop="87347" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="415" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87346" i_stop="87142" i_length="205">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87141" g_stop="87130" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="427" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E287536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90254" e_stop="90196"/>
          <exon e_start="87702" e_stop="87347"/>
          <exon e_start="87141" e_stop="87130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTAATTCTTTTTATGTTGCACATAAATGAAAACAAATAATTTGAAGTGGAGAGAGGTTTTACACTTGCTAGGAAGAATTATATGTTATTGTATGCCTGAAAATCTGTACTGTCGACTCACATTTTTCTGTTGTTTTGAAATGTGGGCAGGGAAAGTGAAAA</genome_strand>
        <mrna_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC.............................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E345647" ref_strand="+" ref_description="SGN-E345647 	[cTOF-18-K6]">
      <seq>cactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattntgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgaattgcctttctcctctggatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90879" stop="87032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90579" g_stop="90544" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90456" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90455" g_stop="90196" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="296" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87702" g_stop="87332" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="667" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E345647" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90579" e_stop="90544"/>
          <exon e_start="90455" e_stop="90196"/>
          <exon e_start="87702" e_stop="87332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</genome_strand>
        <mrna_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTNTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGAATTGCCTTTCTCCTCTGGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E353870" ref_strand="+" ref_description="SGN-E353870 	[cTOS-10-C3]">
      <seq>agaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90749" stop="87048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90449" g_stop="90196" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87702" g_stop="87348" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="609" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E353870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90449" e_stop="90196"/>
          <exon e_start="87702" e_stop="87348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</genome_strand>
        <mrna_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E306494" ref_strand="+" ref_description="SGN-E306494 	[cLEX-13-E16]">
      <seq>tcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90755" stop="87104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90557" g_stop="90544" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90456" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90455" g_stop="90196" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="274" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87702" g_stop="87404" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="573" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E306494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90557" e_stop="90544"/>
          <exon e_start="90455" e_stop="90196"/>
          <exon e_start="87702" e_stop="87404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</genome_strand>
        <mrna_strand>TCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E287412" ref_strand="+" ref_description="SGN-E287412 	[cLES-15-O22]">
      <seq>tggaacgtaacctaaaatagggccaaaagtgcaaattagagagaggtgccacatttagcaagtaggaacgaaggaaaaccctaatttaacagagtcaccactttccatacactcacactaagccggggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaaaggcgggaagaagaaaggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttanggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90987" stop="87220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90687" g_stop="90544" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90453" i_length="91">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90452" g_stop="90196" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="402" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87702" g_stop="87520" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="585" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E287412" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90687" e_stop="90544"/>
          <exon e_start="90452" e_stop="90196"/>
          <exon e_start="87702" e_stop="87520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCAC-TTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</genome_strand>
        <mrna_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTTCCATACACTCACACTAAGCCGGGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAAGGCGGGAAGAAGAAAGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTANGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E276642" ref_strand="+" ref_description="SGN-E276642 	[cLEN-14-E5]">
      <seq>tttaacagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90903" stop="87253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90603" g_stop="90544" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90456" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90455" g_stop="90196" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="320" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87702" g_stop="87553" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="470" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E276642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90603" e_stop="90544"/>
          <exon e_start="90455" e_stop="90196"/>
          <exon e_start="87702" e_stop="87553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</genome_strand>
        <mrna_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E338914" ref_strand="+" ref_description="SGN-E338914 	[cTOE-21-N17]">
      <seq>cctaatttaacagagtcacgcacttccatacactcacactaggccgtggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattggctgagaatgaagcagatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="90908" stop="87265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90608" g_stop="90544" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90453" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90452" g_stop="90196" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="323" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87702" g_stop="87565" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="462" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E338914" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90608" e_stop="90544"/>
          <exon e_start="90452" e_stop="90196"/>
          <exon e_start="87702" e_stop="87565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTTAACAGAGTCAC-CACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATT-GCTGAGAATGAAGCAGATGAAGA</genome_strand>
        <mrna_strand>CCTAATTTAACAGAGTCACGCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGGCTGAGAATGAAGCAGATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E371903" ref_strand="-" ref_description="SGN-E371903 	[TUS-30-I2]">
      <seq>tttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttcttggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94297" stop="90995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93997" g_stop="93731" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91296" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="669" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E371903" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371903" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93997" e_stop="93731"/>
          <exon e_start="91697" e_stop="91296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</genome_strand>
        <mrna_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E551726" ref_strand="+" ref_description="SGN-E551726 	[cTSB-1-K16]">
      <seq>tgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94162" stop="90999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93862" g_stop="93731" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91302" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="528" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="542"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E551726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93862" e_stop="93731"/>
          <exon e_start="91697" e_stop="91302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</genome_strand>
        <mrna_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E551822" ref_strand="+" ref_description="SGN-E551822 	[cTSB-1-P13]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94086" stop="91006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93786" g_stop="93731" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91305" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="472"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E551822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93786" e_stop="93731"/>
          <exon e_start="91697" e_stop="91305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E553003" ref_strand="+" ref_description="SGN-E553003 	[cTSB-5-L2]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaacaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94086" stop="91006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93786" g_stop="93731" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91305" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="469"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E553003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93786" e_stop="93731"/>
          <exon e_start="91697" e_stop="91305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E352396" ref_strand="+" ref_description="SGN-E352396 	[cTOS-9-J23]">
      <seq>ttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94091" stop="91029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93791" g_stop="93731" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91328" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="431" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E352396" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93791" e_stop="93731"/>
          <exon e_start="91697" e_stop="91328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACAT</genome_strand>
        <mrna_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E272167" ref_strand="+" ref_description="SGN-E272167 	[cLEN-4-K23]">
      <seq>cgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattntttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94306" stop="91078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94094" g_stop="94080" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94079" i_stop="94000" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93999" g_stop="93731" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="284" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91697" g_stop="91378" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="604" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E272167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94094" e_stop="94080"/>
          <exon e_start="93999" e_stop="93731"/>
          <exon e_start="91697" e_stop="91378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</genome_strand>
        <mrna_strand>CGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTNTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E219375" ref_strand="-" ref_description="SGN-E219375 	[cLEL-11-F23]">
      <seq>ccgttactgtcactcgtgataagaataaaatcaaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94094" stop="91096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93794" g_stop="93731" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91401" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="362" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="388"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E219375" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93794" e_stop="93731"/>
          <exon e_start="91697" e_stop="91401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATC-ACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</genome_strand>
        <mrna_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATCAACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E336142" ref_strand="+" ref_description="SGN-E336142 	[cTOE-12-K3]">
      <seq>tttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94306" stop="91110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94087" g_stop="94080" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94079" i_stop="94000" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93999" g_stop="93731" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="277" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91697" g_stop="91410" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="565" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E336142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94087" e_stop="94080"/>
          <exon e_start="93999" e_stop="93731"/>
          <exon e_start="91697" e_stop="91410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</genome_strand>
        <mrna_strand>TTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E335016" ref_strand="+" ref_description="SGN-E335016 	[cTOE-9-G9]">
      <seq>gcccgagcagcagcagcagtgaagggcgggaagacagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggaccagtattatggagattgcttctcttgacaagttcctccaagagagaattaagggttggtggaaaagctggtgccacttggagacttccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaatacccttgtcaaaaagtaccttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgatntttttgtccccttatcagtaaaagaaaacgttacctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94255" stop="91110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93957" g_stop="93731" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91415" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="518" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E335016" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93957" e_stop="93731"/>
          <exon e_start="91697" e_stop="91415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGA-AGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGAC-AGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAA-GGTTGGTGGAAAAGCTGGTG-CACTTGGAGA-TTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATA-CCTTGTCAAAAAGTA-CTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGAT-TTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>GCCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGACAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACCAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGGTTGGTGGAAAAGCTGGTGCCACTTGGAGACTTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCCTTGTCAAAAAGTACCTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATNTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E284720" ref_strand="-" ref_description="SGN-E284720 	[cLES-3-J16]">
      <seq>aagggggcaagcttcgtcatcgactgttcgaagccagtgaaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattagggttggtgaaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaccgttactttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94221" stop="91110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93921" g_stop="93731" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91415" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="474" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="494"/>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E284720" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93921" e_stop="93731"/>
          <exon e_start="91697" e_stop="91415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGAAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAGGGTTGGTGAAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAACCGTTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E357774" ref_strand="+" ref_description="SGN-E357774 	[cTOS-24-P6]">
      <seq>cctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94299" stop="91158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94081" g_stop="94080" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94079" i_stop="94000" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93999" g_stop="93731" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91697" g_stop="91459" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="510" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E357774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94081" e_stop="94080"/>
          <exon e_start="93999" e_stop="93731"/>
          <exon e_start="91697" e_stop="91459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</genome_strand>
        <mrna_strand>CC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E285777" ref_strand="+" ref_description="SGN-E285777 	[cLES-5-G16]">
      <seq>ttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="94296" stop="91182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93996" g_stop="93731" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91697" g_stop="91482" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="482" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E285777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93996" e_stop="93731"/>
          <exon e_start="91697" e_stop="91482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</genome_strand>
        <mrna_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E215051" ref_strand="+" ref_description="SGN-E215051 	[cLEC-78-E14]">
      <seq>gagcattagctagattgtttggctcctcccacttctcagtgaagtagattcttaagtaggcggttgttgatgagaccaattagactgcaacctagcctttcacttgtgtccattagtttgcgtcaagtgcaattttgttgatttcatcttttacatccataatcacacagaatagtacacttggattatgtcaaattacatgtgaaataggcttggaagaactaatatgtattaagtttgtaacttgaaagagataggtaactaacatgtaagcaggcttagttataggtaattgataatattgatcattatagatgctcttgctaactgaaacatccttcagggcgtgtaaagcatattttcatgtattttttgttgggttctgaagaaagtcttcattttttatgtaagtttgatgcagctgagtagaatctatagtggtattcttgtttcacctgatgtatgtttctaagcttgttctggaagtgacatcaaccacttattagcatcaccatttacctagcacatttttggttcaagtgatagtccaaaggctacttgtaaaagaaactgatactctaaagagaacaaatgtccaacatatttatcatattacttttttttttttttgcaatttctgtatgcgcgattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="-" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="92808" stop="91555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92508" g_stop="91855" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="-" ref_id="SGN-E215051" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92508" e_stop="91855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTAC--TTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</genome_strand>
        <mrna_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCACCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAA-CAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E243373" ref_strand="+" ref_description="SGN-E243373 	[cLEF-16-J10]">
      <seq>tttcaactacaaatctatttgagtattgagttatttttacttcattctgaattagagatttcgaatttgagtcttttgaatataaagagtttttggatccaaatctttttgaaaataaaatatttcgagtttaaatctttgtgcgtatacagtaatttttactttattctaaattagaaattttaaatttaaattttttagtacaaaaaaaaattaaattgcaaattttaatttaatcaaacttcaatataaatataaggttaaaaatccccgaatacacttctcctcatcatatcttatatatttatctatttatatctttctgtatatattccaacttctcaggtccactttatccctctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="98215" stop="99240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98515" g_stop="98940" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E243373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98515" e_stop="98940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</genome_strand>
        <mrna_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E537921" ref_strand="+" ref_description="SGN-E537921 	[TUS-56-M9]">
      <seq>gccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataaggaggattaatggtttgctggtaggttggttgactattgagaaacataatanaattaaaagtcctatcttggtagtttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="99983" stop="101064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100283" g_stop="100764" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E537921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100283" e_stop="100764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAG</genome_strand>
        <mrna_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATANAATTAAAAGTCCTATCTTGGTAGTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-1wbbU6/sgn_ests_tomato" ref_id="SGN-E265769" ref_strand="+" ref_description="SGN-E265769 	[cLEI-11-B2]">
      <seq>ccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataacgaggattaatggtttgctggtaggttggttgactattgagaaacataataaaattaaaagtcctatcttggtagtttgatagattaattaagttagcaaattagttgggccctataagtaacctcaattaaagattgcttcacacaccaaaatttgtgggacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-mhohH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0278J12.2" temp_strand="+" temp_description="C09HBa0278J12.2  EF647608.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0278J12 sequenced_by:sistemasgenomicos">
        <position start="99984" stop="101149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100284" g_stop="100849" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.2" gen_strand="+" ref_id="SGN-E265769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100284" e_stop="100849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</genome_strand>
        <mrna_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAACGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAAGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>265</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11009" PGL_stop="7462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11009" e_stop="10523"/>
            <exon e_start="7563" e_stop="7462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="0.996"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="11009" e_stop="10523" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="10522" i_stop="7564" i_length="2959"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="7563" e_stop="7462" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11009" stop="10523"/>
              <exon start="7563" stop="7462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAG : AAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</gDNA_template>
            <first_frame> V  K  K  K  T  E  E  N  G  E  N  T  A  Q  N  C  L  R  *  W  N  Q  N  A  R  S  *  N  R  *  R  S  S  S  S  I  S  T  W  L  P  *  V  M  V  F  M  A  P  P  I  A  L  L  F  K  Q  R  L  Q  S  Y  C  A  *  S  S  W  L  R  R  H  *  N  S  I  G  N  Q  *  L  Y  C  F  S  H  C  W  *  F  D  F  S  V  R  Y  S  G  S  R  K  S  V  L  N  W  A  *  L  G  C  S  N  C  L  V  F  L  F  V  S  S  *  S  D  *  S  F  G  E  S  E  L  *  V  T  A  Q  K  S  V  A  K  T  D  *  L  L  E  G  I  A  W  *  *  L  L  H  V  Q  I  S   : E  T  G  S  S  Q  P  Y  L  V  D  A  K  F  K  S  Q  L  S  L  W  W  V  S  W  T  *  H  I  I  F  L  E  S  </first_frame>
            <second_frame>  *  K  K  K  Q  R  K  M  E  K  I  Q  H  K  T  V  S  A  N  G  I  K  M  H  V  A  E  I  G  E  G  P  A  V  L  F  L  H  G  F  P  E  L  W  Y  S  W  R  H  Q  L  L  Y  F  S  N  K  G  Y  R  A  I  A  P  D  L  R  G  Y  G  D  T  E  I  P  S  E  I  S  S  Y  T  A  F  H  I  V  G  D  L  I  S  L  L  D  I  L  D  L  E  K  V  F  L  I  G  H  D  W  G  A  L  I  A  W  F  F  C  L  F  R  P  D  R  I  K  A  L  V  N  L  S  C  E  L  R  P  R  N  P  L  R  K  P  I  D  C  L  R  E  L  L  G  D  D  Y  Y  M  C  R  F  Q  :  K  L  G  A  H  S  P  I  *  W  M  Q  N  S  S  P  N  *  V  C  G  G  *  V  G  L  D  I  *  Y  S  W  N  Q </second_frame>
            <third_frame>   K  K  K  N  R  G  K  W  R  K  Y  S  T  K  L  S  P  L  M  E  S  K  C  T  *  L  K  S  V  K  V  Q  Q  F  Y  F  Y  M  A  S  L  S  Y  G  I  H  G  A  T  N  C  F  T  F  Q  T  K  V  T  E  L  L  R  L  I  F  V  V  T  E  T  L  K  F  H  R  K  S  V  V  I  L  L  F  T  L  L  V  I  *  F  L  C  *  I  F  W  I  *  K  K  C  S  *  L  G  M  I  G  V  L  *  L  L  G  F  S  V  C  F  V  L  I  G  L  K  L  W  *  I  *  V  V  S  Y  G  P  E  I  R  C  E  N  R  L  I  A  *  G  N  C  L  V  M  T  I  T  C  A  D  F  R :   N  W  E  L  T  A  L  F  S  G  C  K  I  Q  V  P  T  K  F  V  V  G  E  L  D  L  T  Y  N  I  P  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11005" stop="10523"/>
                    <exon start="7563" stop="7537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKQRKMEKIQHKTVSANGIKMHVAEIGEGPAVLFLHGFPELWYSWRHQLLYFSNKGYRAIAPDLRGYGDTEIPSEISSYTAFHIVGDLISLLDILDLEKVFLIGHDWGALIAWFFCLFRPDRIKALVNLSCELRPRNPLRKPIDCLRELLGDDYYMCRFQKLGAHSPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12049" PGL_stop="11570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12049" e_stop="11570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="12049" e_stop="11570" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12049" stop="11811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12048" stop="11570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGTTTGGACT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  L  I  *  M  N  I  I  S  K  *  V  *  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  Q  Y  S  G  Y  Q  G  E  L  M  L  L  V  W  T </first_frame>
            <second_frame>  H  V  P  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  *  S  K  *  T  *  F  P  N  E  Y  D  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  L  L  L  L  C  F  L  L  V  *  L  *  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  S  T  P  D  I  R  V  S  *  C  F  *  F  G   </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  N  E  H  N  F  Q  M  S  M  I  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  S  Y  F  Y  V  F  F  L  F  N  C  R  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  V  L  R  I  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11785" stop="11570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLQYSGYQGELMLLVWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12580" PGL_stop="12176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12580" e_stop="12176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="12580" e_stop="12176" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12580" stop="12176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTTTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  F  Y  D  I  R  N  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  K  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  N  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  S  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  Q  E  Q  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  F  T  I  F  V  I  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  *  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  I  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  K  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  E  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  Y  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  V  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21108" PGL_stop="18798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21095" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20639"/>
            <exon e_start="19636" e_stop="19454"/>
            <exon e_start="19227" e_stop="18798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21095" e_stop="21028" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20639" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19636" e_stop="19454" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="19227" e_stop="18798" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21095" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21085" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21048" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21042" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21040" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20891" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19591" stop="19454"/>
              <exon start="19227" stop="18894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19459" stop="19454"/>
              <exon start="19227" stop="18853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19194" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203155" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</gDNA_template>
            <first_frame> R  T  E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W  L  L  T  *  L  E  R :   R  T  I  L  L  L  L  L  G  L  L  P  M  M  F  E  L  M  K  S  Q  K  S  R  L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L :   F  C  L  G  V  Q  R  T  Q  G  R  P  L  S  T  L  V  K  H  L  V  S  H  T  A  T  Q  S  L  M  F  A  Q  R  E  G  S  L  S  E  Q  E  E  R  E  I  A  E  A  T  R  L  E  E  V  L  V  F  E  C  T  L  I  E  F  L  L  E  V  F  A  N  L  L  L  P  L  I  V  S  C  W  I  F  L  F  Q  L  C  F  S  Y  T  L  Q  H  H  I  A  D  F  *  M  C  Y  L  F  C  K  I  N  L  Y  L  E  T  E  S  L  Q  Q  G  Y  A  W  *  F  I  L  F  Y  T  N  S  S  *  Y  I  F  I  I  S  Y </first_frame>
            <second_frame>  E  Q  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F  G  Y  L  H  D  W  K   : G  G  Q  Y  C  C  C  C  W  D  C  Y  R  *  C  S  S  L  *  S  P  K  N  Q  G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H   : C  F  A  *  G  S  K  E  L  K  G  G  R  *  A  L  W  *  S  T  W  C  P  T  Q  P  H  K  A  L  C  S  R  K  G  K  E  V  *  A  S  K  R  K  E  K  *  Q  R  L  Q  G  L  R  K  C  W  C  L  N  A  H  *  *  S  F  Y  *  K  Y  L  P  T  Y  F  Y  H  *  *  Y  L  V  G  F  S  Y  F  N  S  V  S  L  T  H  S  S  I  I  L  L  I  F  E  C  V  I  C  F  A  K  L  I  S  I  *  R  L  N  L  Y  N  K  V  M  L  G  N  L  F  C  F  I  L  I  P  L  N  T  F  L  *  L  A   </second_frame>
            <third_frame>   N  R  K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  V  T  Y  M  T  G  K  :  E  D  N  I  A  V  V  V  G  T  V  T  D  D  V  R  A  Y  E  V  P  K  I  K  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  :  V  L  L  R  G  P  K  N  S  R  E  A  V  K  H  F  G  K  A  P  G  V  P  H  S  H  T  K  P  Y  V  R  A  K  G  R  K  F  E  R  A  R  G  K  R  N  S  R  G  Y  K  A  *  G  S  A  G  V  *  M  H  I  D  R  V  S  I  R  S  I  C  Q  P  T  F  T  I  N  S  I  L  L  D  F  L  I  S  T  L  F  L  L  H  T  P  A  S  Y  C  *  F  L  N  V  L  S  V  L  Q  N  *  S  L  F  R  D  *  I  F  T  T  R  L  C  L  V  I  Y  F  V  L  Y  *  F  L  L  I  H  F  Y  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21093" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20639"/>
                    <exon start="19636" stop="19454"/>
                    <exon start="19227" stop="19069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRKTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTYMTGKEDNIAVVVGTVTDDVRAYEVPKIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21108" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20639"/>
            <exon e_start="19636" e_stop="19199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21108" e_stop="21028" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20639" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19636" e_stop="19199" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21108" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21095" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21048" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21040" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</gDNA_template>
            <first_frame> F  F  H  S  P  N  R  K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  V  T  Y  M  T  G  K  :  E  D  N  I  A  V  V  V  G  T  V  T  D  D  V  R  A  Y  E  V  P  K  I  K  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  V  R  N  F  S  L  S  S  V  C  I  F  M  P  F  L  S  S  I  K  *  I  I  R  E  Y  A  V  V  L  F  T  S  I  *  *  Q  T  E  V  F  L  E  L  W  F  E  S  R  P  A  *  E  M  I  M  Y  S  W  *  R  *  H  W  L  V  I  C  F  V  M  L  S  *  S  G  F  A  *  G  S  K  E  L  K </first_frame>
            <second_frame>  F  S  I  L  R  T  E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W  L  L  T  *  L  E  R :   R  T  I  L  L  L  L  L  G  L  L  P  M  M  F  E  L  M  K  S  Q  K  S  R  L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L  Y  G  T  S  L  S  H  Q  F  A  F  L  C  L  F  F  H  Q  S  S  E  *  L  E  N  M  L  *  C  S  S  L  V  Y  N  N  K  P  R  C  F  *  N  C  G  L  N  L  V  L  H  R  K  *  L  C  I  H  G  R  G  N  I  G  *  S  F  V  L  *  C  F  L  D  Q  V  L  L  R  G  P  K  N  S   </second_frame>
            <third_frame>   F  P  F  S  E  Q  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F  G  Y  L  H  D  W  K   : G  G  Q  Y  C  C  C  C  W  D  C  Y  R  *  C  S  S  L  *  S  P  K  N  Q  G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H  C  T  E  L  L  S  L  I  S  L  H  F  Y  A  F  S  F  I  N  Q  V  N  N  *  R  I  C  C  S  A  L  H  *  Y  I  I  T  N  R  G  V  F  R  I  V  V  *  I  S  S  C  I  G  N  D  Y  V  F  M  V  E  V  T  L  A  S  H  L  F  C  N  A  F  L  I  R  F  C  L  G  V  Q  R  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21108" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20639"/>
                    <exon start="19636" stop="19391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHSPNRKTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTYMTGKEDNIAVVVGTVTDDVRAYEVPKIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRNFSLSSVCIFMPFLSSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21089" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20660"/>
            <exon e_start="19564" e_stop="19454"/>
            <exon e_start="19227" e_stop="18798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.525" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21089" e_stop="21028" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20660" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.525" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19564" e_stop="19454" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="19227" e_stop="18798" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21089" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="18891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549082" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21089" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="18892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19459" stop="19454"/>
              <exon start="19227" stop="18853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19194" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203155" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG : GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</gDNA_template>
            <first_frame> E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W :   L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L :   F  C  L  G  V  Q  R  T  Q  G  R  P  L  S  T  L  V  K  H  L  V  S  H  T  A  T  Q  S  L  M  F  A  Q  R  E  G  S  L  S  E  Q  E  E  R  E  I  A  E  A  T  R  L  E  E  V  L  V  F  E  C  T  L  I  E  F  L  L  E  V  F  A  N  L  L  L  P  L  I  V  S  C  W  I  F  L  F  Q  L  C  F  S  Y  T  L  Q  H  H  I  A  D  F  *  M  C  Y  L  F  C  K  I  N  L  Y  L  E  T  E  S  L  Q  Q  G  Y  A  W  *  F  I  L  F  Y  T  N  S  S  *  Y  I  F  I  I  S  Y </first_frame>
            <second_frame>  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F   : G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H   : C  F  A  *  G  S  K  E  L  K  G  G  R  *  A  L  W  *  S  T  W  C  P  T  Q  P  H  K  A  L  C  S  R  K  G  K  E  V  *  A  S  K  R  K  E  K  *  Q  R  L  Q  G  L  R  K  C  W  C  L  N  A  H  *  *  S  F  Y  *  K  Y  L  P  T  Y  F  Y  H  *  *  Y  L  V  G  F  S  Y  F  N  S  V  S  L  T  H  S  S  I  I  L  L  I  F  E  C  V  I  C  F  A  K  L  I  S  I  *  R  L  N  L  Y  N  K  V  M  L  G  N  L  F  C  F  I  L  I  P  L  N  T  F  L  *  L  A   </second_frame>
            <third_frame>   K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  :  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  :  V  L  L  R  G  P  K  N  S  R  E  A  V  K  H  F  G  K  A  P  G  V  P  H  S  H  T  K  P  Y  V  R  A  K  G  R  K  F  E  R  A  R  G  K  R  N  S  R  G  Y  K  A  *  G  S  A  G  V  *  M  H  I  D  R  V  S  I  R  S  I  C  Q  P  T  F  T  I  N  S  I  L  L  D  F  L  I  S  T  L  F  L  L  H  T  P  A  S  Y  C  *  F  L  N  V  L  S  V  L  Q  N  *  S  L  F  R  D  *  I  F  T  T  R  L  C  L  V  I  Y  F  V  L  Y  *  F  L  L  I  H  F  Y  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21087" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20660"/>
                    <exon start="19564" stop="19454"/>
                    <exon start="19227" stop="19069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25445" PGL_stop="26728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25445" e_stop="26728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25445" e_stop="26728" e_length="1284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25445" stop="25830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25522" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25757" stop="26366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25757" stop="25981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25997" stop="26623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372914" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26222" stop="26728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</gDNA_template>
            <first_frame> S  S  Y  R  R  Q  I  L  C  L  H  F  L  M  L  H  R  F  R  V  R  C  L  I  A  V  E  *  C  G  P  L  S  R  I  Q  L  V  L  C  H  M  V  V  S  L  I  S  M  M  W  *  R  S  T  W  I  G  F  *  L  K  S  W  M  E  P  C  *  S  S  F  I  R  L  S  V  V  L  P  K  Q  C  R  W  Q  L  T  W  L  C  L  N  A  L  V  I  F  S  F  V  M  L  H  S  F  Q  G  F  H  *  E  W  Q  R  G  G  G  D  C  S  L  *  L  K  P  A  M  L  L  K  R  C  F  Q  V  C  L  S  K  R  L  M  G  S  F  C  *  L  R  M  *  I  G  W  P  M  I  L  Y  R  V  E  M  N  M  C  M  R  *  L  F  F  L  K  H  *  L  L  L  P  S  K  Y  C  L  F  K  F  *  R  E  F  C  K  M  F  C  V  I  Y  Q  R  *  L  L  G  L  Y  W  G  N  Q  L  K  G  S  T  *  M  L  L  W  L  L  M  L  I  S  V  C  W  N  H  L  L  K  T  K  L  L  S  Y  L  K  Q  M  L  V  S  *  K  Q  H  W  A  S  P  G  S  W  L  I  Y  S  *  A  I  T  R  K  I  S  *  I  Q  L  L  E  R  E  V  I  M  L  W  T  T  A  K  L  L  L  S  R  K  R  *  R  I  K  V  T  D  F  L  G  L  L  A  Q  G  E  L  S  R  T  L  K  R  N  L  L  M  H  *  L  K  D  *  R  T  S  T  E  S  A  N  L  C  M  L  C  S  L  G  R  S  P  Y  C  S  C  V  D  Y  L  L  I  S  Y  L  A  S  F  F  S  A  N  C  L  P  F  Y  V  I  F  S  S  P  S  S  T  L  I  A  V  L  F  F  R  A  Y  I  F  F  C  N  S  D  I  V  F  L  S  H  E  T  S  L  F  S  F  G  F  F  F  R  R  I  I  T  S  S  L  R  F  I </first_frame>
            <second_frame>  P  V  T  D  V  K  Y  Y  A  C  I  S  L  C  C  T  V  F  V  Y  G  A  *  L  L  *  N  S  A  V  L  Y  R  G  F  S  *  F  Y  V  T  W  W  S  A  *  F  L  *  C  G  E  E  V  L  G  S  A  F  N  *  S  P  G  W  S  P  V  E  A  H  S  Y  V  Y  R  W  C  Y  P  S  N  A  D  G  S  *  H  G  C  V  *  T  R  L  *  F  F  L  S  S  C  C  T  A  F  R  D  S  I  E  N  G  R  E  G  E  E  T  V  P  F  D  *  S  P  R  C  C  *  R  D  A  F  R  S  A  *  A  K  G  *  W  V  P  F  V  D  *  E  C  E  L  D  G  R  *  S  S  T  E  W  K  *  I  C  A  *  G  D  Y  F  S  *  N  T  N  F  Y  C  P  A  N  I  A  C  S  S  S  E  E  S  F  A  R  C  S  V  S  Y  I  R  D  D  C  W  G  F  T  G  G  I  S  *  K  V  Q  R  E  C  C  Y  G  S  *  C  *  Y  P  Y  V  G  I  I  C  *  K  P  S  S  S  P  I  *  S  R  C  *  S  A  E  S  S  I  G  R  V  Q  A  V  G  *  S  T  L  K  Q  S  P  G  K  F  P  E  S  S  Y  *  R  E  K  L  *  C  F  G  L  P  Q  S  C  Y  Y  L  G  K  D  E  G  S  K  *  Q  T  F  W  V  F  W  H  K  G  S  *  A  E  H  *  K  E  I  S  *  C  I  N  *  K  I  E  G  R  Q  L  S  L  R  I  S  V  C  Y  V  P  *  G  D  L  H  I  V  V  V  L  I  T  C  *  F  H  I  *  L  P  F  F  L  Q  I  A  Y  H  F  T  *  F  F  P  P  L  V  P  H  *  L  L  Y  Y  S  S  E  H  T  Y  S  F  A  T  Q  I  *  S  F  Y  L  M  K  L  V  S  S  R  L  A  S  F  S  V  E  *  L  H  L  L  F  D  L   </second_frame>
            <third_frame>   Q  L  Q  T  S  N  I  M  P  A  F  P  Y  V  A  P  F  S  C  T  V  P  D  C  C  R  I  V  R  S  F  I  E  D  S  V  S  F  M  S  H  G  G  Q  L  D  F  Y  D  V  V  K  K  Y  L  D  R  L  L  T  E  V  L  D  G  A  L  L  K  L  I  H  T  S  I  G  G  V  T  Q  A  M  Q  M  A  A  N  M  A  V  F  E  R  A  C  D  F  F  F  R  H  A  A  Q  L  S  G  I  P  L  R  M  A  E  R  G  R  R  L  F  P  L  T  K  A  R  D  A  A  E  E  M  L  S  G  L  L  K  Q  K  V  D  G  F  L  L  L  I  E  N  V  N  W  M  A  D  D  P  L  Q  S  G  N  E  Y  V  H  E  V  I  I  F  L  E  T  L  T  S  T  A  Q  Q  I  L  P  V  Q  V  L  K  R  V  L  Q  D  V  L  C  H  I  S  E  M  I  V  G  A  L  L  G  E  S  V  K  R  F  N  V  N  A  V  M  A  L  D  V  D  I  R  M  L  E  S  F  A  E  N  Q  A  P  L  L  S  E  A  D  A  S  Q  L  K  A  A  L  G  E  S  R  Q  L  V  N  L  L  L  S  N  H  P  E  N  F  L  N  P  V  I  R  E  R  S  Y  N  A  L  D  Y  R  K  V  V  T  I  S  E  K  M  K  D  Q  S  D  R  L  F  G  S  F  G  T  R  G  A  K  Q  N  T  K  K  K  S  L  D  A  L  I  K  R  L  K  D  V  N  *  V  C  E  S  L  Y  V  M  F  L  R  E  I  S  I  L  *  L  C  *  L  L  A  D  F  I  S  S  F  L  F  F  C  K  L  P  T  I  L  R  N  F  F  L  P  *  F  H  I  D  C  C  I  I  L  Q  S  I  H  I  L  L  Q  L  R  Y  S  L  F  I  S  *  N  *  S  L  L  V  W  L  L  F  P  *  N  N  Y  I  F  S  S  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25447" stop="26448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTSNIMPAFPYVAPFSCTVPDCCRIVRSFIEDSVSFMSHGGQLDFYDVVKKYLDRLLTEVLDGALLKLIHTSIGGVTQAMQMAANMAVFERACDFFFRHAAQLSGIPLRMAERGRRLFPLTKARDAAEEMLSGLLKQKVDGFLLLIENVNWMADDPLQSGNEYVHEVIIFLETLTSTAQQILPVQVLKRVLQDVLCHISEMIVGALLGESVKRFNVNAVMALDVDIRMLESFAENQAPLLSEADASQLKAALGESRQLVNLLLSNHPENFLNPVIRERSYNALDYRKVVTISEKMKDQSDRLFGSFGTRGAKQNTKKKSLDALIKRLKDVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26435" stop="26728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSTESANLCMLCSLGRSPYCSCVDYLLISYLASFFSANCLPFYVIFSSPSSTLIAVLFFRAYIFFCNSDIVFLSHETSLFSFGFFFRRIITSSLRFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27255" PGL_stop="27857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27255" e_stop="27857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27255" e_stop="27857" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27255" stop="27857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTATAAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTG</gDNA_template>
            <first_frame> P  Y  K  K  K  R  *  T  L  E  Q  R  K  T  S  M  F  T  E  M  S  I  A  S  T  R  S  I  F  Y  L  F  L  F  F  F  A  T  A  V  S  R  N  E  K  L  S  A  Y  E  E  L  Q  R  Y  D  F  P  M  G  I  L  P  K  G  V  K  D  Y  K  L  N  P  K  T  G  E  F  S  A  Y  L  N  S  T  C  S  F  K  L  E  N  S  Y  Q  L  N  Y  K  P  V  I  K  G  V  I  S  K  G  R  L  R  K  L  C  G  V  S  V  K  V  V  L  L  W  L  N  I  V  E  V  N  R  K  G  K  N  L  E  F  S  V  G  L  A  S  A  N  F  P  V  E  N  F  E  E  C  P  Q  C  G  R  G  L  N  C  V  D  E  D  D  N  V  V  S  S  F  *  L  L  *  L  K  S  S  C  F  F  F  F  V  F  W  W  W  K  *  C  V  F  L </first_frame>
            <second_frame>  L  I  K  K  N  G  E  L  W  N  N  E  K  H  Q  C  S  Q  K  C  Q  *  L  Q  Q  E  V  F  F  T  S  F  S  S  F  L  P  L  Q  F  Q  E  M  R  S  Y  Q  L  M  K  S  Y  S  V  M  I  S  Q  W  G  F  F  Q  K  E  *  K  T  T  N  *  T  P  K  Q  V  N  S  Q  L  I  L  I  L  P  A  A  S  N  W  R  T  H  I  N  *  I  T  S  L  L  *  K  E  L  Y  L  K  A  G  L  G  N  C  V  V  L  V  *  R  W  C  C  Y  G  L  T  L  L  K  L  T  E  K  V  R  I  L  S  F  Q  L  D  S  L  R  R  I  F  R  L  R  I  L  R  N  V  H  S  V  D  V  D  *  I  V  L  M  K  M  T  M  L  C  L  P  F  N  Y  F  D  *  N  L  V  V  F  F  F  L  F  S  G  G  G  N  D  V  F  F   </second_frame>
            <third_frame>   L  *  K  K  T  V  N  F  G  T  T  K  N  I  N  V  H  R  N  V  N  S  F  N  K  K  Y  F  L  P  L  S  L  L  F  C  H  C  S  F  K  K  *  E  A  I  S  L  *  R  A  T  A  L  *  F  P  N  G  D  S  S  K  R  S  K  R  L  Q  I  K  P  Q  N  R  *  I  L  S  L  S  *  F  Y  L  Q  L  Q  I  G  E  L  I  S  T  E  L  Q  A  C  Y  K  R  S  Y  I  *  R  Q  A  *  E  T  V  W  C  *  C  K  G  G  V  A  M  A  *  H  C  *  S  *  Q  K  R  *  E  S  *  V  F  S  W  T  R  F  G  E  F  S  G  *  E  F  *  G  M  S  T  V  W  T  W  I  E  L  C  *  *  R  *  Q  C  C  V  F  L  L  T  T  L  I  E  I  *  L  F  F  F  F  C  F  L  V  V  E  M  M  C  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27276" stop="27788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEQRKTSMFTEMSIASTRSIFYLFLFFFATAVSRNEKLSAYEELQRYDFPMGILPKGVKDYKLNPKTGEFSAYLNSTCSFKLENSYQLNYKPVIKGVISKGRLRKLCGVSVKVVLLWLNIVEVNRKGKNLEFSVGLASANFPVENFEECPQCGRGLNCVDEDDNVVSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33177" PGL_stop="33597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33177" e_stop="33597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33177" e_stop="33597" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33177" stop="33597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAACTTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGTACT</gDNA_template>
            <first_frame> S  F  S  G  H  R  R  *  G  F  S  V  P  D  G  I  R  D  S  T  G  I  R  Y  S  G  R  D  T  S  E  G  R  N  K  V  R  T  R  Q  N  N  G  Q  F  R  R  L  L  *  Q  I  V  Q  F  Q  H  K  R  L  *  S  Q  V  Y  E  *  N  Y  W  *  N  L  *  G  S  A  C  E  L  E  R  R  T  G  E  T  A  F  F  F  C  Q  Y  C  G  S  Y  S  *  R  R  *  S  R  F  L  R  R  C  F  F  C  *  F  C  N  *  V  L  L  *  T  A  R  V  W  M  W  I  *  L  C  Q  F  W  R  K  R  Y  </first_frame>
            <second_frame>  A  S  P  V  I  G  D  E  D  S  Q  S  P  T  A  Y  E  I  L  Q  E  Y  D  I  P  A  G  I  L  P  K  G  V  T  R  Y  E  L  D  K  T  T  G  N  F  A  V  Y  F  N  K  S  C  S  F  S  I  S  G  Y  D  L  K  Y  M  S  K  I  T  G  K  I  S  K  D  R  L  A  N  L  K  G  V  Q  V  K  L  L  F  F  F  V  N  I  V  G  V  T  R  D  G  D  D  L  G  F  S  V  G  V  S  S  V  D  F  A  I  E  Y  F  Y  E  P  P  E  C  G  C  G  F  D  C  V  N  S  G  E  N  G  T </second_frame>
            <third_frame>   L  L  R  S  S  A  M  R  I  L  S  P  R  R  H  T  R  F  Y  R  N  T  I  F  R  Q  G  Y  F  R  R  A  *  Q  G  T  N  S  T  K  Q  R  A  I  S  P  F  T  L  T  N  R  A  V  S  A  *  A  A  M  I  S  S  I  *  V  K  L  L  V  K  S  L  R  I  G  L  R  T  *  K  A  Y  R  *  N  C  F  F  F  L  S  I  L  W  E  L  L  V  T  A  M  I  S  V  S  P  S  V  F  L  L  L  I  L  Q  L  S  T  S  M  N  R  Q  S  V  D  V  D  L  I  V  S  I  L  E  K  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33178" stop="33597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASPVIGDEDSQSPTAYEILQEYDIPAGILPKGVTRYELDKTTGNFAVYFNKSCSFSISGYDLKYMSKITGKISKDRLANLKGVQVKLLFFFVNIVGVTRDGDDLGFSVGVSSVDFAIEYFYEPPECGCGFDCVNSGENGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="35731" PGL_stop="36178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35731" e_stop="36178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="35731" e_stop="36178" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35732" stop="36178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATACTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAGGAGAGACGCTGGCAAATTTTAGCTAATGTTTACTATGGAGCACAATTAAATCAAACCCTAGTTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  L  F  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  E  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  G  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  I  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  Y  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  N  I  Q  F  S  L  A  L  Y  K  T  E  I  K  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  E  E  R  R  W  Q  I  L  A  N  V  Y  Y  G  A  Q  L  N  Q  T  L  V  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  Y  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  T  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  *  I  Y  N  F  L  S  L  Y  T  K  Q  K  *  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  R  R  D  A  G  K  F  *  L  M  F  T  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35918" stop="36178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVNIQFSLALYKTEIKLYTSVYKAREASENGEWRARFLEERRWQILANVYYGAQLNQTLVIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="45396" PGL_stop="45975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45396" e_stop="45975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45396" e_stop="45975" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45396" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT</gDNA_template>
            <first_frame> G  N  Y  E  Q  D  M  P  S  V  A  L  P  L  C  I  L  L  L  L  L  Q  L  S  A  A  S  P  V  V  G  D  E  D  S  Q  S  P  T  A  Y  E  I  L  Q  E  Y  D  F  P  V  G  I  L  P  K  G  V  T  R  Y  E  L  D  K  T  T  G  N  F  A  V  Y  F  N  K  S  C  S  F  S  I  S  G  Y  N  L  K  Y  M  S  K  I  T  G  K  I  S  K  D  R  L  A  N  L  K  G  V  Q  V  K  V  L  L  F  W  I  N  I  V  E  V  T  R  D  G  D  D  L  D  F  S  V  G  I  A  S  A  D  F  A  I  D  N  F  Y  E  S  P  Q  C  G  C  G  F  D  C  V  N  S  G  E  N  G  T  G  K  F  D  L  K  L  L  I  T  S  S  *  I  V  N  F  Q  K  S  T  V  D  *  D  V  L  G  </first_frame>
            <second_frame>  V  T  T  N  K  I  C  L  L  *  P  F  P  Y  A  S  S  Y  S  Y  S  N  S  L  Q  L  H  R  S  S  A  M  R  I  L  S  P  R  R  R  M  R  F  F  R  N  T  T  F  R  *  G  Y  F  R  R  A  *  Q  G  T  N  S  T  K  Q  R  A  I  S  P  F  T  L  T  N  R  A  V  S  A  *  A  A  I  I  S  S  I  *  V  K  L  L  V  K  S  L  R  I  D  L  R  T  *  K  A  Y  R  *  K  C  F  C  F  G  L  I  L  S  K  L  L  V  T  A  T  I  S  I  S  P  S  V  L  L  L  L  I  L  Q  L  I  T  S  M  N  R  H  S  V  D  V  D  L  I  V  S  I  L  E  K  M  A  Q  V  S  S  I  *  S  C  L  S  L  R  L  E  S  *  I  F  R  N  R  L  *  I  K  M  F  *  D </second_frame>
            <third_frame>   *  L  R  T  R  Y  A  F  C  S  P  S  L  M  H  P  P  T  P  T  P  T  L  C  S  F  T  G  R  R  R  *  G  F  S  V  P  D  G  V  *  D  S  S  G  I  R  L  S  G  R  D  T  S  E  G  R  N  K  V  R  T  R  Q  N  N  G  Q  F  R  R  L  L  *  Q  I  V  Q  F  Q  H  K  R  L  *  S  Q  V  Y  E  *  N  Y  W  *  N  L  *  G  S  T  C  E  L  E  R  R  T  G  E  S  A  F  V  L  D  *  Y  C  R  S  Y  S  *  R  R  R  S  R  F  L  R  R  Y  C  F  C  *  F  C  N  *  *  L  L  *  I  A  T  V  W  M  W  I  *  L  C  Q  F  W  R  K  W  H  R  *  V  R  F  E  A  A  Y  H  F  V  L  N  R  K  F  S  E  I  D  C  R  L  R  C  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45396" stop="45929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNYEQDMPSVALPLCILLLLLQLSAASPVVGDEDSQSPTAYEILQEYDFPVGILPKGVTRYELDKTTGNFAVYFNKSCSFSISGYNLKYMSKITGKISKDRLANLKGVQVKVLLFWINIVEVTRDGDDLDFSVGIASADFAIDNFYESPQCGCGFDCVNSGENGTGKFDLKLLITSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="47266" PGL_stop="51150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47266" e_stop="47651"/>
            <exon e_start="50924" e_stop="51150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47266" e_stop="47651" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="50924" e_stop="51150" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47266" stop="47651"/>
              <exon start="50924" stop="51150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47321" stop="47635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG : ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGC</gDNA_template>
            <first_frame> S  I  R  T  P  E  N  S  V  Y  I  L  V  G  L  A  V  S  H  *  K  G  L  I  S  L  G  I  N  R  D  S  V  G  T  *  L  K  I  G  C  Q  A  Y  M  G  L  V  *  K  F  C  F  C  G  *  I  L  W  R  L  L  R  M  V  T  I  L  S  S  L  L  E  L  L  R  L  A  F  P  L  T  I  S  W  F  V  H  N  V  D  V  D  *  I  A  I  A  M  D  I  F  *  R  F  E  T  V  T  L  S  L  L  F  S  C  T  Q  K  D  D  G  A  *  V  Y  *  K  R :   Y  L  Q  L  M  E  K  I  R  *  H  G  C  S  V  Q  K  A  *  N  G  H  S  P  P  S  S  S  S  *  L  Q  Y  K  K  S  K  T  H  V  F  I  Y  I  I  V  M  L  S  T  I  S  S  L  L  C  H  G  Y  K  I  F  L  K  L  L  F  I  T  R  F  F  S  I  T  </first_frame>
            <second_frame>  R  *  G  H  R  K  I  Q  C  T  S  *  W  V  L  Q  F  R  I  R  R  V  L  S  A  *  V  S  I  E  I  R  W  V  H  S  *  K  *  A  V  K  P  T  W  G  *  C  K  N  S  V  S  V  A  E  Y  C  G  G  C  *  E  W  *  Q  S  *  V  L  C  W  N  C  F  G  *  L  S  H  L  Q  F  L  G  L  S  T  M  W  M  W  I  E  L  Q  *  Q  W  T  Y  S  K  D  S  K  Q  *  P  C  L  F  C  L  A  A  H  R  R  M  M  E  P  E  F  T  E  R   : D  T  C  N  S  W  K  R  S  G  D  M  V  A  V  Y  R  K  P  E  M  V  I  L  L  L  P  P  H  H  S  C  N  T  K  S  R  K  L  M  C  S  F  T  L  S  L  C  Y  L  Q  F  R  L  C  S  V  M  D  T  K  Y  S  *  N  C  C  L  *  R  D  S  F  P  S  R </second_frame>
            <third_frame>   D  K  D  T  G  K  F  S  V  H  L  S  G  S  C  S  F  A  L  E  G  S  Y  Q  L  R  Y  Q  S  R  F  G  G  Y  I  A  K  N  R  L  S  S  L  H  G  V  S  V  K  I  L  F  L  W  L  N  I  V  E  V  V  K  N  G  D  N  L  E  F  S  V  G  I  A  S  A  S  F  P  T  Y  N  F  L  V  C  P  Q  C  G  C  G  L  N  C  N  S  N  G  H  I  L  K  I  R  N  S  N  L  V  S  S  V  *  L  H  T  E  G  *  W  S  L  S  L  L  K  E  :  I  L  A  T  H  G  K  D  Q  V  T  W  L  Q  C  T  E  S  L  K  W  S  F  S  S  F  L  L  I  I  V  A  I  Q  K  V  E  N  S  C  V  H  L  H  Y  R  Y  V  I  Y  N  F  V  F  A  L  S  W  I  Q  N  I  L  E  I  A  V  Y  N  E  I  L  F  H  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47268" stop="47609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKDTGKFSVHLSGSCSFALEGSYQLRYQSRFGGYIAKNRLSSLHGVSVKILFLWLNIVEVVKNGDNLEFSVGIASASFPTYNFLVCPQCGCGLNCNSNGHILKIRNSNLVSSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47591" stop="47651"/>
                    <exon start="50924" stop="51114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCLFCLAAHRRMMEPEFTERDTCNSWKRSGDMVAVYRKPEMVILLLPPHHSCNTKSRKLMCSFTLSLCYLQFRLCSVMDTKYS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47628" stop="47651"/>
                    <exon start="50924" stop="51148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLSLLKEILATHGKDQVTWLQCTESLKWSFSSFLLIIVAIQKVENSCVHLHYRYVIYNFVFALSWIQNILEIAVYNEILFHH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51001" PGL_stop="50650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51001" e_stop="50650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="51001" e_stop="50650" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51001" stop="50650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318410" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTCCTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTACAGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACA</gDNA_template>
            <first_frame> E  G  G  E  *  P  F  Q  A  F  C  T  L  Q  P  C  H  L  I  F  S  M  S  C  K  Y  L  Q  A  L  N  K  *  S  H  V  L  D  I  F  L  L  I  F  E  A  M  Q  K  S  N  T  L  *  S  A  I  G  C  Y  R  R  E  R  E  R  A  E  E  I  S  R  S  C  G  C  R  S  V  S  H  T  M  Y  Y  T  S  A  S  K  V  F  S  I  G  P  N  I  I  Y  L  V  I  G  L  Y  F  L  L  I  A  I  L  V  N  Y  Y  </first_frame>
            <second_frame>  K  E  E  N  D  H  F  R  L  S  V  H  C  N  H  V  T  *  S  F  P  *  V  A  S  I  C  K  H  S  T  N  R  V  M  Y  *  I  S  S  F  *  F  S  R  Q  C  R  S  Q  I  H  Y  K  V  P  *  V  A  T  E  E  K  E  K  G  Q  R  K  *  A  D  L  V  A  A  G  L  S  L  T  Q  C  T  I  Q  V  H  Q  R  F  L  V  L  D  Q  I  L  F  I  *  L  *  V  Y  I  S  Y  L  L  Q  F  *  *  I  I  T </second_frame>
            <third_frame>   R  R  R  M  T  I  S  G  F  L  Y  T  A  T  M  S  P  D  L  F  H  E  L  Q  V  S  A  S  T  Q  Q  I  E  S  C  I  R  Y  L  P  S  N  F  R  G  N  A  E  V  K  Y  T  I  K  C  H  R  L  L  Q  K  R  K  R  K  G  R  G  N  K  Q  I  L  W  L  Q  V  C  L  S  H  N  V  L  Y  K  C  I  K  G  F  *  Y  W  T  K  Y  Y  L  F  S  Y  R  F  I  F  L  T  Y  C  N  F  S  E  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50999" stop="50724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRMTISGFLYTATMSPDLFHELQVSASTQQIESCIRYLPSNFRGNAEVKYTIKCHRLLQKRKRKGRGNKQILWLQVCLSHNVLYKCIKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="61662" PGL_stop="53658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55739"/>
            <exon e_start="55463" e_stop="55449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55739" e_length="458"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="55738" i_stop="55464" i_length="275"/>
          </intron>
          <exon e_serial="3" e_score="0.533">
            <gDNA_exon_boundary e_start="55463" e_stop="55449" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56874" stop="56655"/>
              <exon start="56196" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56874" stop="56655"/>
              <exon start="56196" stop="55910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374904" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="55790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="56010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="56085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245701" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="56108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56852" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56721" stop="56655"/>
              <exon start="56196" stop="55739"/>
              <exon start="55463" stop="55449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT : AGATCATAACAAACA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L :   D  H  N  K   </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S   : *  I  I  T  N  </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  :  R  S  *  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55735" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56876" stop="56655"/>
              <exon start="56196" stop="55972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56875" stop="56655"/>
              <exon start="56196" stop="55905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56874" stop="56655"/>
              <exon start="56196" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56874" stop="56655"/>
              <exon start="56196" stop="55910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374904" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="55790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="56010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56872" stop="56655"/>
              <exon start="56196" stop="56085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56871" stop="56655"/>
              <exon start="56196" stop="55746"/>
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            <referenceDNA id="SGN-E262197" strand="+"/>
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              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="56108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56852" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTT</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y   </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56867" e_stop="56655"/>
            <exon e_start="56196" e_stop="56189"/>
            <exon e_start="56123" e_stop="55735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56867" e_stop="56655" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="56189" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56123" e_stop="55735" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56866" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGAT : ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTT</gDNA_template>
            <first_frame> V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I :   C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  </first_frame>
            <second_frame>  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G   : Y  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F </second_frame>
            <third_frame>   S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  :  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56865" stop="56655"/>
                    <exon start="56196" stop="56189"/>
                    <exon start="56123" stop="55977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="61662" e_stop="61329"/>
            <exon e_start="53771" e_stop="53658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.851"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="61662" e_stop="61329" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61328" i_stop="53772" i_length="7557"/>
          </intron>
          <exon e_serial="2" e_score="0.851">
            <gDNA_exon_boundary e_start="53771" e_stop="53658" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61662" stop="61341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61662" stop="61372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61661" stop="61329"/>
              <exon start="53771" stop="53658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACACTTCTGTGTATAAAGCAAGAGAGGCGAGCGAGATT : GGAGAGTGGCGAGCGAGATATTTGGGAGAGAGGCGTCTGACAATTTTTTGCAAACGTTTGCTATGGAACACAATTAATCAAATCCTAGCTACTCCATTTGTTTTAGATTATTAG</gDNA_template>
            <first_frame> *  N  V  R  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  R  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  I  F  H  C  N  C  I  I  R  N  Y  I  I  C  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  K  R  G  E  R  D   : W  R  V  A  S  E  I  F  G  R  E  A  S  D  N  F  L  Q  T  F  A  M  E  H  N  *  S  N  P  S  Y  S  I  C  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  E  K  H  N  I  F  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  I  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  I  :  G  E  W  R  A  R  Y  L  G  E  R  R  L  T  I  F  C  K  R  L  L  W  N  T  I  N  Q  I  L  A  T  P  F  V  L  D  Y  * </second_frame>
            <third_frame>   K  C  T  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  K  R  N  T  I  Y  S  L  L  L  Y  K  A  R  E  N  Y  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  *  K  Q  N  Y  T  L  L  C  I  K  Q  E  R  R  A  R  L :   E  S  G  E  R  D  I  W  E  R  G  V  *  Q  F  F  A  N  V  C  Y  G  T  Q  L  I  K  S  *  L  L  H  L  F  *  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61475" stop="61329"/>
                    <exon start="53771" stop="53658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYIFLHVYIQFSLALYKIETELYTSVYKAREASEIGEWRARYLGERRLTIFCKRLLWNTINQILATPFVLDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="55688" PGL_stop="56180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55688" e_stop="56180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="55688" e_stop="56180" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55688" stop="55890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55757" stop="56180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACGTAAACCTGGAGATTGAAGAATTCAAAAAAAAAAGAAGAAAAAAATAGGATCTAAAGCCCGAAGATTAACACTAATACTATAATTATTTCATTTGCATGAATAAAAGATACTAATAAAAGAAAGATATAACAATAAGCTTAAAATTTAAAAGCAACAAAGCACGAGTAAATTTCACACTGCTATATTTTTCTGATAAAACAGTTCCTTCACTAAATTCTCTTTTCTCGTTGATCGAAAATCTCCGATGAGTAACCGGAGATCAACGGCGCAGCTTCAAAGATTTTCAGTTGCTTCCAGATCTGTGTTTCAACAGCATCTTCCGGAGCTCAGCAGCGTCAATCTCATTTGCTTGTCCTTCCGGCCTATAGTAACCGGTAACTGGATCTGGCACCCATGAAGTCTTCACCGATTCCTCTCCACTTTTTTGCATCATCACGTTGCTCCTTGGCACTCCTTTTGCTACACCGGAAACTGCACCTTGTGATGC</gDNA_template>
            <first_frame> N  T  *  T  W  R  L  K  N  S  K  K  K  E  E  K  N  R  I  *  S  P  K  I  N  T  N  T  I  I  I  S  F  A  *  I  K  D  T  N  K  R  K  I  *  Q  *  A  *  N  L  K  A  T  K  H  E  *  I  S  H  C  Y  I  F  L  I  K  Q  F  L  H  *  I  L  F  S  R  *  S  K  I  S  D  E  *  P  E  I  N  G  A  A  S  K  I  F  S  C  F  Q  I  C  V  S  T  A  S  S  G  A  Q  Q  R  Q  S  H  L  L  V  L  P  A  Y  S  N  R  *  L  D  L  A  P  M  K  S  S  P  I  P  L  H  F  F  A  S  S  R  C  S  L  A  L  L  L  L  H  R  K  L  H  L  V  M  </first_frame>
            <second_frame>  I  R  K  P  G  D  *  R  I  Q  K  K  K  K  K  K  I  G  S  K  A  R  R  L  T  L  I  L  *  L  F  H  L  H  E  *  K  I  L  I  K  E  R  Y  N  N  K  L  K  I  *  K  Q  Q  S  T  S  K  F  H  T  A  I  F  F  *  *  N  S  S  F  T  K  F  S  F  L  V  D  R  K  S  P  M  S  N  R  R  S  T  A  Q  L  Q  R  F  S  V  A  S  R  S  V  F  Q  Q  H  L  P  E  L  S  S  V  N  L  I  C  L  S  F  R  P  I  V  T  G  N  W  I  W  H  P  *  S  L  H  R  F  L  S  T  F  L  H  H  H  V  A  P  W  H  S  F  C  Y  T  G  N  C  T  L  *  C </second_frame>
            <third_frame>   Y  V  N  L  E  I  E  E  F  K  K  K  R  R  K  K  *  D  L  K  P  E  D  *  H  *  Y  Y  N  Y  F  I  C  M  N  K  R  Y  *  *  K  K  D  I  T  I  S  L  K  F  K  S  N  K  A  R  V  N  F  T  L  L  Y  F  S  D  K  T  V  P  S  L  N  S  L  F  S  L  I  E  N  L  R  *  V  T  G  D  Q  R  R  S  F  K  D  F  Q  L  L  P  D  L  C  F  N  S  I  F  R  S  S  A  A  S  I  S  F  A  C  P  S  G  L  *  *  P  V  T  G  S  G  T  H  E  V  F  T  D  S  S  P  L  F  C  I  I  T  L  L  L  G  T  P  F  A  T  P  E  T  A  P  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55890" stop="56090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSFTKFSFLVDRKSPMSNRRSTAQLQRFSVASRSVFQQHLPELSSVNLICLSFRPIVTGNWIWHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="62654" PGL_stop="67860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62654" e_stop="62853"/>
            <exon e_start="62952" e_stop="63124"/>
            <exon e_start="66825" e_stop="66918"/>
            <exon e_start="67229" e_stop="67317"/>
            <exon e_start="67783" e_stop="67860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62654" e_stop="62853" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62854" i_stop="62951" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62952" e_stop="63124" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.976">
            <gDNA_intron_boundary i_start="63125" i_stop="66824" i_length="3700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66825" e_stop="66918" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66919" i_stop="67228" i_length="310"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67229" e_stop="67317" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="67318" i_stop="67782" i_length="465"/>
          </intron>
          <exon e_serial="5" e_score="0.910">
            <gDNA_exon_boundary e_start="67783" e_stop="67860" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62654" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62662" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62692" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62692" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62716" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62717" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62717" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62717" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62724" stop="62853"/>
              <exon start="62952" stop="63124"/>
              <exon start="66825" stop="66918"/>
              <exon start="67229" stop="67317"/>
              <exon start="67783" stop="67826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG : AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG : AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG : GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT : TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTT</gDNA_template>
            <first_frame> S  C  P  K  I  S  G  E  I  N  D  Y  *  S  F  Y  L  T  G  E  S  C  S  *  A  *  T  S  S  H  G  G  G  E  P  K  Y  E  P  E  S  G  P  *  R  R  R  S  S  T  K  C  D  Y  L  H  Q  *  P  Q  *  K  N  *  A  *  R :   A  E  E  I  D  A  R  C  V  L  T  V  W  *  D  T  G  G  F  S  I  Q  N  P  K  A  *  R  T  G  V  G  S  V  *  *  S  F  F  C  *  Q  C  T  S  P  D  A  G  F  S  F  L  *  *  A  Y   : E  N  T  I  C  K  D  E  I  *  C  C  S  K  S  R  W  Y  F  C  S  P  R  K  K  K  E  A  R  G  *  R :   E  K  E  E  G  P  A  R  C  *  S  S  W  N  G  P  E  S  C  I  C  W  C  L  W  C  S  T  S   : F  L  T  N  T  I  H  G  W  S  *  S  C  S  T  G  G  S  C  S  A  K  *  H  I  V  </first_frame>
            <second_frame>  R  A  Q  K  F  L  E  K  L  T  T  T  E  V  S  T  S  P  A  K  V  A  A  R  R  R  R  A  A  M  A  E  A  N  Q  N  T  N  P  N  P  A  P  S  G  G  E  V  P  P  N  V  T  I  Y  I  N  N  L  N  E  K  I  K  L  E   : E  L  K  K  S  M  H  A  V  F  S  Q  F  G  K  I  L  E  V  L  A  F  K  T  L  K  H  K  G  Q  A  W  V  V  F  D  E  V  S  S  A  S  N  A  L  R  Q  M  Q  G  F  P  F  Y  D  K  P  M  :  R  I  Q  Y  A  K  T  K  S  D  V  V  A  K  A  D  G  T  F  V  P  R  E  K  R  K  R  H  E  D  K   : G  R  K  K  K  D  Q  Q  D  A  N  Q  A  G  M  G  R  N  P  A  Y  A  G  A  Y  G  A  A  P  P  :  F  S  Q  I  P  Y  M  G  G  A  K  A  A  V  P  E  A  P  A  P  P  N  S  I  L  F </second_frame>
            <third_frame>   V  P  K  N  F  W  R  N  *  R  L  L  K  F  L  P  H  R  R  K  L  Q  L  G  V  D  E  Q  P  W  R  R  R  T  K  I  R  T  R  I  R  P  L  A  A  A  K  F  H  Q  M  *  L  F  T  S  I  T  S  M  K  K  L  S  L  K  :  S  *  R  N  R  C  T  L  C  S  H  S  L  V  R  Y  W  R  F  *  H  S  K  P  *  S  I  K  D  R  R  G  *  C  L  M  K  F  L  L  L  A  M  H  F  A  R  C  R  V  F  L  S  M  I  S  L  * :   E  Y  N  M  Q  R  R  N  L  M  L  *  Q  K  P  M  V  L  L  F  P  E  K  K  E  R  G  T  R  I  K  :  G  E  R  R  R  T  S  K  M  L  I  K  L  E  W  A  G  I  L  H  M  L  V  L  M  V  Q  H  L  L :   S  H  K  Y  H  T  W  V  E  L  K  L  Q  Y  R  R  L  L  L  R  Q  I  A  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62655" stop="62853"/>
                    <exon start="62952" stop="63124"/>
                    <exon start="66825" stop="66918"/>
                    <exon start="67229" stop="67317"/>
                    <exon start="67783" stop="67860"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQKFLEKLTTTEVSTSPAKVAARRRRAAMAEANQNTNPNPAPSGGEVPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDANQAGMGRNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="82410" PGL_stop="80044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82410" e_stop="81737"/>
            <exon e_start="80062" e_stop="80044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82410" e_stop="81737" e_length="674"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.971">
            <gDNA_intron_boundary i_start="81736" i_stop="80063" i_length="1674"/>
          </intron>
          <exon e_serial="2" e_score="0.526">
            <gDNA_exon_boundary e_start="80062" e_stop="80044" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82410" stop="82166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82409" stop="81901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82073" stop="81737"/>
              <exon start="80062" stop="80044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392622" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAAATAACTATCTAAAATAGAGAGATTATTTTTGAT : AGGCATGTAAAAACACATG</gDNA_template>
            <first_frame> K  Q  S  T  L  V  E  A  Q  Q  H  *  K  A  Q  K  D  E  E  G  *  E  L  E  Y  S  E  E  G  *  Q  K  *  W  T  *  I  W  N  L  *  V  E  E  K  K  L  K  V  R  D  L  *  E  M  K  L  E  L  G  F  *  L  C  L  V  C  *  K  G  L  R  F  *  E  D  *  G  N  G  L  E  G  L  W  I  K  Q  V  K  L  K  L  S  V  K  W  V  S  A  V  V  L  L  E  V  F  G  L  L  S  Y  R  K  I  D  S  L  D  P  F  L  M  S  F  P  V  R  K  M  Y  R  I  R  G  R  R  *  R  *  A  T  A  *  Y  P  P  K  N  F  V  G  F  V  K  V  G  V  N  I  I  I  L  C  L  F  F  C  L  F  V  V  L  G  G  *  G  V  Y  R  G  W  *  R  W  M  Y  Q  F  K  S  G  *  I  F  V  R  V  N  L  F  V  *  F  *  I  D  M  K  F  K  K  I  K  *  L  S  K  I  E  R  L  F  L  I :   G  M  *  K  H  M </first_frame>
            <second_frame>  N  N  R  R  S  S  K  P  S  S  I  R  R  L  R  R  T  K  R  V  K  S  *  S  I  L  K  R  V  S  R  N  S  G  L  E  F  G  I  C  R  W  K  R  R  S  *  K  *  E  I  C  K  R  *  N  L  S  W  D  F  D  F  V  W  F  V  E  K  G  *  D  F  R  R  I  K  E  M  G  W  K  D  C  G  *  S  K  *  N  *  S  Y  R  *  N  G  C  L  L  L  F  F  L  R  C  L  G  F  *  V  I  G  K  L  I  L  W  I  H  F  *  *  V  F  R  *  E  K  C  T  E  S  E  E  E  D  E  D  K  R  R  L  N  T  L  Q  R  I  L  L  V  L  L  K  L  V  S  I  *  *  Y  Y  V  Y  F  F  A  Y  L  L  C  *  V  G  E  V  F  I  E  V  G  R  G  G  C  I  N  L  R  V  D  K  F  L  Y  E  S  I  Y  L  S  D  F  E  S  I  *  N  L  R  K  S  N  N  Y  L  K  *  R  D  Y  F  *   : *  A  C  K  N  T   </second_frame>
            <third_frame>   T  I  D  A  R  R  S  P  A  A  L  E  G  S  E  G  R  R  G  L  R  V  R  V  F  *  R  G  L  A  E  I  V  D  L  N  L  E  F  V  G  G  R  E  E  A  E  S  E  R  F  V  R  D  E  T  *  V  G  I  L  T  L  F  G  L  L  K  R  V  E  I  L  G  G  L  R  K  W  V  G  R  I  V  D  K  A  S  E  I  E  A  I  G  K  M  G  V  C  C  C  S  S  *  G  V  W  A  S  E  L  S  E  N  *  F  F  G  S  I  S  D  E  F  S  G  E  K  N  V  Q  N  Q  R  K  K  M  K  I  S  D  G  L  I  P  S  K  E  F  C  W  F  C  *  S  W  C  Q  Y  N  N  T  M  F  I  F  L  P  I  C  C  V  R  W  V  R  C  L  *  R  L  V  E  V  D  V  S  I  *  E  W  I  N  F  C  T  S  Q  F  I  C  L  I  L  N  R  Y  E  I  *  E  N  Q  I  T  I  *  N  R  E  I  I  F  D  :  R  H  V  K  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="81950" PGL_stop="85309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81950" e_stop="83006"/>
            <exon e_start="84306" e_stop="84535"/>
            <exon e_start="84628" e_stop="84720"/>
            <exon e_start="84863" e_stop="85309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81950" e_stop="83006" e_length="1057"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83007" i_stop="84305" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84306" e_stop="84535" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84536" i_stop="84627" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84628" e_stop="84720" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="84721" i_stop="84862" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="84863" e_stop="85309" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81950" stop="82281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81955" stop="82487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81981" stop="82546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81981" stop="82468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81984" stop="82587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81986" stop="82544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81991" stop="82603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82204" stop="82754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82340" stop="82814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82593" stop="83006"/>
              <exon start="84306" stop="84391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82674" stop="83006"/>
              <exon start="84306" stop="84368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82674" stop="83006"/>
              <exon start="84306" stop="84368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82674" stop="82871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82764" stop="83006"/>
              <exon start="84306" stop="84535"/>
              <exon start="84628" stop="84720"/>
              <exon start="84863" stop="84962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82935" stop="83006"/>
              <exon start="84306" stop="84535"/>
              <exon start="84628" stop="84720"/>
              <exon start="84863" stop="85090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84310" stop="84535"/>
              <exon start="84628" stop="84720"/>
              <exon start="84863" stop="85093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84528" stop="84535"/>
              <exon start="84628" stop="84720"/>
              <exon start="84863" stop="85203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84945" stop="85203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84978" stop="85309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84978" stop="85308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84978" stop="85308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84979" stop="85308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</gDNA_template>
            <first_frame> T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S  S </first_frame>
            <second_frame>  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V   </second_frame>
            <third_frame>   K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82014" stop="83006"/>
                    <exon start="84306" stop="84535"/>
                    <exon start="84628" stop="84720"/>
                    <exon start="84863" stop="84941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85078" stop="85272"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="85307" PGL_stop="84978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85307" e_stop="84978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85307" e_stop="84978" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85307" stop="84978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85301" stop="84978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTAGTTTACATTGAAATGAGTATCAATAGTAAATCATCTGATGCTCAAGGATACTCTCCGCGGGTTCAAGATGGATGGTAATCTCAAACATGGAACACATATTTCAACTACAGGTATGTTTGTTATCACACCTGTTTCAACTACAGATGAAATCAAAAATATATAAATACTAGCATAAGAAGGATTGTAGAGCGACTTGCTAGAAATGGCGACAAATTCTTTTATGTCTCAACACTTATTGTCAAAAGAAAAAATGCTTCAATTCAATGGCAGTCCAACTCTAACATTCCACAGCTAAACTTCCGGAAAAAATAAATCAAGCTACAAA</gDNA_template>
            <first_frame> N  *  F  T  L  K  *  V  S  I  V  N  H  L  M  L  K  D  T  L  R  G  F  K  M  D  G  N  L  K  H  G  T  H  I  S  T  T  G  M  F  V  I  T  P  V  S  T  T  D  E  I  K  N  I  *  I  L  A  *  E  G  L  *  S  D  L  L  E  M  A  T  N  S  F  M  S  Q  H  L  L  S  K  E  K  M  L  Q  F  N  G  S  P  T  L  T  F  H  S  *  T  S  G  K  N  K  S  S  Y  K </first_frame>
            <second_frame>  T  S  L  H  *  N  E  Y  Q  *  *  I  I  *  C  S  R  I  L  S  A  G  S  R  W  M  V  I  S  N  M  E  H  I  F  Q  L  Q  V  C  L  L  S  H  L  F  Q  L  Q  M  K  S  K  I  Y  K  Y  *  H  K  K  D  C  R  A  T  C  *  K  W  R  Q  I  L  L  C  L  N  T  Y  C  Q  K  K  K  C  F  N  S  M  A  V  Q  L  *  H  S  T  A  K  L  P  E  K  I  N  Q  A  T   </second_frame>
            <third_frame>   L  V  Y  I  E  M  S  I  N  S  K  S  S  D  A  Q  G  Y  S  P  R  V  Q  D  G  W  *  S  Q  T  W  N  T  Y  F  N  Y  R  Y  V  C  Y  H  T  C  F  N  Y  R  *  N  Q  K  Y  I  N  T  S  I  R  R  I  V  E  R  L  A  R  N  G  D  K  F  F  Y  V  S  T  L  I  V  K  R  K  N  A  S  I  Q  W  Q  S  N  S  N  I  P  Q  L  N  F  R  K  K  *  I  K  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="90687" PGL_stop="87130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90603" e_stop="90544"/>
            <exon e_start="90455" e_stop="90196"/>
            <exon e_start="87702" e_stop="87332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90603" e_stop="90544" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="90543" i_stop="90456" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90455" e_stop="90196" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87702" e_stop="87332" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90603" stop="90544"/>
              <exon start="90455" stop="90196"/>
              <exon start="87702" stop="87553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90579" stop="90544"/>
              <exon start="90455" stop="90196"/>
              <exon start="87702" stop="87332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90557" stop="90544"/>
              <exon start="90455" stop="90196"/>
              <exon start="87702" stop="87404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90449" stop="90196"/>
              <exon start="87702" stop="87348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</gDNA_template>
            <first_frame> F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  </first_frame>
            <second_frame>  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S </second_frame>
            <third_frame>   *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90567" stop="90544"/>
                    <exon start="90455" stop="90196"/>
                    <exon start="87702" stop="87558"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87567" stop="87334"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90603" e_stop="90544"/>
            <exon e_start="90455" e_stop="90196"/>
            <exon e_start="87702" e_stop="87347"/>
            <exon e_start="87141" e_stop="87130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90603" e_stop="90544" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="90543" i_stop="90456" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90455" e_stop="90196" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87702" e_stop="87347" e_length="356"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="87346" i_stop="87142" i_length="205"/>
          </intron>
          <exon e_serial="4" e_score="0.583">
            <gDNA_exon_boundary e_start="87141" e_stop="87130" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90603" stop="90544"/>
              <exon start="90455" stop="90196"/>
              <exon start="87702" stop="87553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90557" stop="90544"/>
              <exon start="90455" stop="90196"/>
              <exon start="87702" stop="87404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90449" stop="90196"/>
              <exon start="87702" stop="87348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90254" stop="90196"/>
              <exon start="87702" stop="87347"/>
              <exon start="87141" stop="87130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </first_frame>
            <second_frame>  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </second_frame>
            <third_frame>   *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90567" stop="90544"/>
                    <exon start="90455" stop="90196"/>
                    <exon start="87702" stop="87558"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87567" stop="87347"/>
                    <exon start="87141" stop="87132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90687" e_stop="90544"/>
            <exon e_start="90452" e_stop="90196"/>
            <exon e_start="87702" e_stop="87347"/>
            <exon e_start="87141" e_stop="87130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.808" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="90687" e_stop="90544" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.808">
            <gDNA_intron_boundary i_start="90543" i_stop="90453" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90452" e_stop="90196" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90195" i_stop="87703" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87702" e_stop="87347" e_length="356"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="87346" i_stop="87142" i_length="205"/>
          </intron>
          <exon e_serial="4" e_score="0.583">
            <gDNA_exon_boundary e_start="87141" e_stop="87130" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90687" stop="90544"/>
              <exon start="90452" stop="90196"/>
              <exon start="87702" stop="87520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90608" stop="90544"/>
              <exon start="90452" stop="90196"/>
              <exon start="87702" stop="87565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90449" stop="90196"/>
              <exon start="87702" stop="87348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90254" stop="90196"/>
              <exon start="87702" stop="87347"/>
              <exon start="87141" stop="87130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> W  N  V  T  *  N  R  A  K  S  A  N  *  R  E  V  P  H  L  A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </first_frame>
            <second_frame>  G  T  *  P  K  I  G  P  K  V  Q  I  R  E  R  C  H  I  *  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </second_frame>
            <third_frame>   E  R  N  L  K  *  G  Q  K  C  K  L  E  R  G  A  T  F  S  K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : *  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90567" stop="90544"/>
                    <exon start="90452" stop="90196"/>
                    <exon start="87702" stop="87558"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87567" stop="87347"/>
                    <exon start="87141" stop="87132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="94094" PGL_stop="91296"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94094" e_stop="94080"/>
            <exon e_start="93999" e_stop="93731"/>
            <exon e_start="91697" e_stop="91296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94094" e_stop="94080" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="94079" i_stop="94000" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93999" e_stop="93731" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93730" i_stop="91698" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91697" e_stop="91296" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94094" stop="94080"/>
              <exon start="93999" stop="93731"/>
              <exon start="91697" stop="91378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94087" stop="94080"/>
              <exon start="93999" stop="93731"/>
              <exon start="91697" stop="91410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94081" stop="94080"/>
              <exon start="93999" stop="93731"/>
              <exon start="91697" stop="91459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93997" stop="93731"/>
              <exon start="91697" stop="91296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371903" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93996" stop="93731"/>
              <exon start="91697" stop="91482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93957" stop="93731"/>
              <exon start="91697" stop="91415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93921" stop="93731"/>
              <exon start="91697" stop="91415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93862" stop="93731"/>
              <exon start="91697" stop="91302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93794" stop="93731"/>
              <exon start="91697" stop="91401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93791" stop="93731"/>
              <exon start="91697" stop="91328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93786" stop="93731"/>
              <exon start="91697" stop="91305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93786" stop="93731"/>
              <exon start="91697" stop="91305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</gDNA_template>
            <first_frame> R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  V  L  P  F  P  S  *  *  S  H  V  I  Y  R  V  Y  L  L  L  F   </first_frame>
            <second_frame>  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L  Y  C  L  F  P  L  D  D  H  M  *  F  I  E  F  I  F  C  C  S  </second_frame>
            <third_frame>   S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L  C  I  A  F  S  L  L  M  I  T  C  N  L  *  S  L  S  F  V  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94094" stop="94080"/>
                    <exon start="93999" stop="93731"/>
                    <exon start="91697" stop="91553"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92508" e_stop="91855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="92508" e_stop="91855" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92508" stop="91855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</gDNA_template>
            <first_frame> E  H  *  L  D  C  L  A  P  P  T  S  Q  *  S  R  F  L  S  R  R  L  L  M  R  P  I  R  L  Q  P  S  L  S  L  V  S  I  S  L  R  Q  V  Q  F  C  *  F  H  L  L  H  P  *  S  H  R  I  V  H  L  D  Y  V  K  L  H  V  K  *  A  W  K  N  *  Y  V  L  S  L  *  L  E  R  D  R  *  L  T  C  K  Q  A  *  L  *  V  I  D  N  I  D  H  Y  R  C  S  C  *  L  K  H  P  S  G  R  V  K  H  I  F  M  Y  F  L  L  G  S  E  E  S  L  H  F  L  C  K  F  D  A  A  E  *  N  L  *  W  Y  S  C  F  I  *  C  M  F  L  S  L  F  W  K  *  H  Q  P  L  I  S  I  T  I  Y  L  A  H  F  W  F  K  *  *  S  K  G  Y  L  *  K  K  L  I  L  *  R  E  P  N  V  Q  H  I  Y  H  I  T  F  F  F  L  Q  F  L  Y  A  R  L  M </first_frame>
            <second_frame>  S  I  S  *  I  V  W  L  L  P  L  L  S  E  V  D  S  *  V  G  G  C  *  *  D  Q  L  D  C  N  L  A  F  H  L  C  P  L  V  C  V  K  C  N  F  V  D  F  I  F  Y  I  H  N  H  T  E  *  Y  T  W  I  M  S  N  Y  M  *  N  R  L  G  R  T  N  M  Y  *  V  C  N  L  K  E  I  G  N  *  H  V  S  R  L  S  Y  R  *  L  I  I  L  I  I  I  D  A  L  A  N  *  N  I  L  Q  G  V  *  S  I  F  S  C  I  F  C  W  V  L  K  K  V  F  I  F  Y  V  S  L  M  Q  L  S  R  I  Y  S  G  I  L  V  S  S  D  V  C  F  *  A  C  S  G  S  D  I  N  H  L  L  A  S  P  F  T  *  H  I  F  G  S  S  D  S  P  K  A  T  C  K  R  N  *  Y  S  K  E  N  Q  M  S  N  I  F  I  I  L  L  F  F  F  C  N  F  C  M  R  D  *   </second_frame>
            <third_frame>   A  L  A  R  L  F  G  S  S  H  F  S  V  K  *  I  L  K  *  A  V  V  D  E  T  N  *  T  A  T  *  P  F  T  C  V  H  *  F  A  S  S  A  I  L  L  I  S  S  F  T  S  I  I  T  Q  N  S  T  L  G  L  C  Q  I  T  C  E  I  G  L  E  E  L  I  C  I  K  F  V  T  *  K  R  *  V  T  N  M  *  A  G  L  V  I  G  N  *  *  Y  *  S  L  *  M  L  L  L  T  E  T  S  F  R  A  C  K  A  Y  F  H  V  F  F  V  G  F  *  R  K  S  S  F  F  M  *  V  *  C  S  *  V  E  S  I  V  V  F  L  F  H  L  M  Y  V  S  K  L  V  L  E  V  T  S  T  T  Y  *  H  H  H  L  P  S  T  F  L  V  Q  V  I  V  Q  R  L  L  V  K  E  T  D  T  L  K  R  T  K  C  P  T  Y  L  S  Y  Y  F  F  F  F  A  I  S  V  C  A  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="98515" PGL_stop="98940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98515" e_stop="98940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98515" e_stop="98940" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98515" stop="98940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</gDNA_template>
            <first_frame> F  Q  L  Q  I  Y  L  S  I  E  L  F  L  L  H  S  E  L  E  I  S  N  L  S  L  L  N  I  K  S  F  W  I  Q  I  F  L  K  I  K  Y  F  E  F  K  S  L  C  V  Y  S  N  F  Y  F  I  L  N  *  K  F  *  I  *  I  F  *  Y  K  K  K  L  N  C  K  F  *  F  N  Q  T  S  I  *  I  *  G  *  K  S  P  N  T  L  L  L  I  I  S  Y  I  F  I  Y  L  Y  L  S  V  Y  I  P  T  S  Q  V  H  F  I  P  L  P  V  F  Q  E  F  N  I  L  L  Y  F  Y  R  I  N  N  H  F  F  S </first_frame>
            <second_frame>  F  N  Y  K  S  I  *  V  L  S  Y  F  Y  F  I  L  N  *  R  F  R  I  *  V  F  *  I  *  R  V  F  G  S  K  S  F  *  K  *  N  I  S  S  L  N  L  C  A  Y  T  V  I  F  T  L  F  *  I  R  N  F  K  F  K  F  F  S  T  K  K  N  *  I  A  N  F  N  L  I  K  L  Q  Y  K  Y  K  V  K  N  P  R  I  H  F  S  S  S  Y  L  I  Y  L  S  I  Y  I  F  L  Y  I  F  Q  L  L  R  S  T  L  S  L  S  L  F  S  K  N  S  I  S  Y  Y  T  F  I  V  S  I  I  T  F  S   </second_frame>
            <third_frame>   S  T  T  N  L  F  E  Y  *  V  I  F  T  S  F  *  I  R  D  F  E  F  E  S  F  E  Y  K  E  F  L  D  P  N  L  F  E  N  K  I  F  R  V  *  I  F  V  R  I  Q  *  F  L  L  Y  S  K  L  E  I  L  N  L  N  F  L  V  Q  K  K  I  K  L  Q  I  L  I  *  S  N  F  N  I  N  I  R  L  K  I  P  E  Y  T  S  P  H  H  I  L  Y  I  Y  L  F  I  S  F  C  I  Y  S  N  F  S  G  P  L  Y  P  S  P  C  F  P  R  I  Q  Y  L  T  I  L  L  S  Y  Q  *  S  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98732" stop="98938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IANFNLIKLQYKYKVKNPRIHFSSSYLIYLSIYIFLYIFQLLRSTLSLSLFSKNSISYYTFIVSIITFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="100283" PGL_stop="100849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100283" e_stop="100849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="100283" e_stop="100849" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100283" stop="100764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100284" stop="100849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</gDNA_template>
            <first_frame> A  N  W  L  A  *  D  *  S  G  V  S  C  *  L  S  W  Q  Y  V  H  Y  V  Y  L  V  V  G  Y  Y  Y  T  R  I  S  F  L  *  G  T  I  I  G  D  I  *  *  C  N  C  *  E  L  V  V  K  N  A  T  K  N  G  S  Q  I  E  C  Q  T  E  N  S  P  N  I  L  I  L  S  Y  *  R  Y  Y  R  F  A  E  T  K  *  F  L  P  L  N  N  I  L  I  W  F  T  A  A  *  L  V  C  F  L  S  F  F  G  *  F  A  N  *  Q  L  C  W  N  F  I  V  C  L  L  K  *  G  G  L  M  V  C  W  *  V  G  *  L  L  R  N  I  I  K  L  K  V  L  S  W  *  F  D  R  L  I  R  L  A  N  *  L  G  P  I  S  N  L  N  *  R  L  L  H  T  P  K  F  V  G  H  F </first_frame>
            <second_frame>  P  T  G  L  L  E  I  E  V  E  F  H  V  S  Y  L  G  S  M  C  I  M  F  I  W  L  W  D  I  I  I  Q  E  Y  L  F  Y  R  A  Q  L  L  V  I  Y  N  N  A  I  V  R  S  *  *  L  K  M  Q  R  K  M  V  L  K  L  N  A  R  L  K  T  H  L  T  Y  *  S  S  H  T  E  G  T  I  D  L  L  K  Q  S  N  F  Y  P  *  I  T  S  L  Y  G  L  Q  L  H  D  *  S  V  S  C  P  F  L  V  N  L  L  I  N  S  Y  V  G  T  S  L  F  A  Y  *  N  K  E  D  *  W  F  A  G  R  L  V  D  Y  *  E  T  *  *  N  *  K  S  Y  L  G  S  L  I  D  *  L  G  *  Q  I  S  W  A  L  *  V  T  S  I  K  D  C  F  T  H  Q  N  L  W  D  T   </second_frame>
            <third_frame>   Q  L  A  C  L  R  L  K  W  S  F  M  L  A  I  L  A  V  C  A  L  C  L  S  G  C  G  I  L  L  Y  K  N  I  F  F  I  G  H  N  Y  W  *  Y  I  I  M  Q  L  L  G  A  S  S  *  K  C  N  E  K  W  F  S  N  *  M  P  D  *  K  L  T  *  H  T  D  P  L  I  L  K  V  L  *  I  C  *  N  K  V  I  F  T  L  E  *  H  P  Y  M  V  Y  S  C  M  I  S  L  F  L  V  L  F  W  L  I  C  *  L  T  A  M  L  E  L  H  C  L  P  T  K  I  R  R  I  N  G  L  L  V  G  W  L  T  I  E  K  H  N  K  I  K  S  P  I  L  V  V  *  *  I  N  *  V  S  K  L  V  G  P  Y  K  *  P  Q  L  K  I  A  S  H  T  K  I  C  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 395 chains have been computed
$ 
$ memory statistics:
$ 599160 bytes spliced alignments in total
$ 265 spliced alignments have been stored
$ 2260 bytes was the average size of a spliced alignment
$ 34776 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 500 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 05:24:49
-->
