<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 05:09:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E375464" ref_strand="+" ref_description="SGN-E375464 	[TUS-34-H6]">
      <seq>tttttttttagattaaactccaagaacttgcaactaatttcataacagattgacaggcttcgaatacagcctacaaagagaaaaaaacacgagtatgttcatccacaaggaaaaataatacaagacaacttccatttatgagagctgcatcctcttttatttgacacattcatgcatataacttcaagtagctttacagacatttgatctgcacccgaatgttcattcttcagcaacagtatactccatcaaaattgcagcagttcgatacccaagttaactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="5661" stop="4785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5369" g_stop="5085" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E375464" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5369" e_stop="5085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATGATAGATTAAACTCCAAGAACTTGCAACTAATTTCATAACAGATTGACAGGCTTCGAATACAGCCTACAAAGAGAAAAAAACACGAGTATGTTCATCCACAAGGAAAAATAATACAAGACAACTTCCATTTATGAGAGCTGCATCCTCTTTTATTTGACACATTCATGCATATAACTTCAAGTAGCTTTACAGACATTTGATCTGCACCCGAATGTTCATTCTTCAGCAACAGTATACTCCATCAAAATTGCAGCAGTTCGATACCCAAGTTAACTGTG</genome_strand>
        <mrna_strand>TTTTTTTTTAGATTAAACTCCAAGAACTTGCAACTAATTTCATAACAGATTGACAGGCTTCGAATACAGCCTACAAAGAGAAAAAAACACGAGTATGTTCATCCACAAGGAAAAATAATACAAGACAACTTCCATTTATGAGAGCTGCATCCTCTTTTATTTGACACATTCATGCATATAACTTCAAGTAGCTTTACAGACATTTGATCTGCACCCGAATGTTCATTCTTCAGCAACAGTATACTCCATCAAAATTGCAGCAGTTCGATACCCAAGTTAACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E254276" ref_strand="+" ref_description="SGN-E254276 	[cLEG-27-M20]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="4786" stop="5661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5086" g_stop="5370" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E254276" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5086" e_stop="5370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E254379" ref_strand="+" ref_description="SGN-E254379 	[cLEG-27-M21]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="4786" stop="5661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5086" g_stop="5370" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E254379" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5086" e_stop="5370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E375465" ref_strand="+" ref_description="SGN-E375465 	[TUS-34-H6]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagatgatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="4786" stop="5588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5086" g_stop="5288" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E375465" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5086" e_stop="5288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTT</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGATGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E348262" ref_strand="+" ref_description="SGN-E348262 	[cTOF-27-K8]">
      <seq>tgttacccatttccccaagcaattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgtcagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtggtttcattggcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtggttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="16039" stop="17296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16339" g_stop="16996" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E348262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16339" e_stop="16996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATG</genome_strand>
        <mrna_strand>TGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGGTTTCATTGGCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGGTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E340629" ref_strand="+" ref_description="SGN-E340629 	[cTOF-1-I22]">
      <seq>tttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtgttttcattgtcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtgtttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatggatgagaaatatggtgatgtgaatgataaccatgttggtgttgatttaagcagctttatatctgtgaaagtgagtaatgttagttctgttaaattggggctaatgaatagtggtgaaaagatgcaatcttggattgattatgaagcaagttcaaagagattagaaatcaggttgagcaaattaggtgacataaagccagttgatacattacttttcttgccctattgatatgtcacaaatgtggaaagaggatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="16301" stop="17553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16601" g_stop="17253" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E340629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16601" e_stop="17253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTAC-TTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATT</genome_strand>
        <mrna_strand>TTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E300743" ref_strand="+" ref_description="SGN-E300743 	[cLEW-8-D24]">
      <seq>acatagcaaaaacaccatggcaacaatacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="20988" stop="22133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21288" g_stop="21833" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E300743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21288" e_stop="21833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAA</genome_strand>
        <mrna_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E316396" ref_strand="+" ref_description="SGN-E316396 	[cTOA-25-F1]">
      <seq>aacaatacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaaagttgggagtgatgagttaggacnagaaatggttttgttaatgaataaagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="21009" stop="22188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21309" g_stop="21888" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E316396" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21309" e_stop="21888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAA</genome_strand>
        <mrna_strand>AACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACNAGAAATGGTTTTGTTAATGAATAAAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E316608" ref_strand="+" ref_description="SGN-E316608 	[cTOA-25-L22]">
      <seq>atacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaaagttgggagtgatgagttaggacaagaaatggttttgttaatgaataaagagaaagtgcaaacaagggctgtcaaatttagtgatagtatgaggactggatgtagttatatggaaattaagtttaaagatgggaaaatgagggtggagaaagttcagactctgctgangatcactgcttagctccgaattgaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="21013" stop="22333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21313" g_stop="22033" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E316608" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21313" e_stop="22033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTG</genome_strand>
        <mrna_strand>ATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTC-AGACTCTGCTGANGA-TCACTGCTTAGCTCCGAATTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E317881" ref_strand="+" ref_description="SGN-E317881 	[cTOA-30-N10]">
      <seq>cttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcattatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="21078" stop="22130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21378" g_stop="21830" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E317881" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21378" e_stop="21830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGG-AATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGG</genome_strand>
        <mrna_strand>CTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCA-TTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E368668" ref_strand="+" ref_description="SGN-E368668 	[TUS-22-J24]">
      <seq>ccgaattgaatcttgatgttctgaaagaggctaggatgttccactttaattctgaagtcttgacatcttcatctatgcgttcaactctttttaaagcaattacattgtcaaagaagtttggtggtcttgtattttttgacttaaatctgccattgcctctgtggagatcacgtgacgaaacaagggatttgatcaaggaagcctggcagcaagctaacatcattgaggtttcgaggcaagagcttgaatttcttcttgacgaagagcattacgagaggaaaaggaattatagacctcaatactttgcggagaattacgaacaaaccaaacaaagaagaaattattatcactatactcctgaggaaattgctcccttgtggcacgacggactgaaacttctgtttgttacagatgggacacttaggattcattactattccccttcttttgatggggtggttgttggtacagaagatgtgctcataacaccgtttacttgggataaaactggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="21719" stop="23937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22019" g_stop="22047" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22048" i_stop="23150" i_length="1103">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23151" g_stop="23637" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="516" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E368668" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22019" e_stop="22047"/>
          <exon e_start="23151" e_stop="23637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGAATCTTGATGTTCTGAAAGAGGTATGTGGAAGTGTTGTTATTAAAAGTAAAGATATATTTTTATTTATGGATAGATTAAGCATGTTGTTGTTTCTATTTGTGTAGTGATGTTTGGCTTTAAATGTTAATAGAGGATGCATGAATCTAATTTGCTATGTGATTGGTATTAAACTATGTTGCGCAAAATGGCTTATGAAAGAACCCCATGGCTGCTTTTCTTAAGATATCGTCTGACCCGCTGGGGTCGTTGCTCTTATCTTGTTCTCCCGTTGTGAAACCAGTTCATTTCGTAGTTGTTAGTTTTGGAATTCCGCTGATTCCAAGTACTCTACTTTATACCTACTATTTCGTCTTGTTTTTGGTTTCTAGTCTTATTTTACCATCTCCATCATCGCACATAGGAATGTAGAGAGTAACACTAATATTCCCCATAAATGCTTATTAGTAGGTATATTGAAGTCAGACTGCTGGAGAAGCTCACTATTTATCAGTAGACACTATTGTGCTGTCGTTAACAGTTTTATTGCTCTCTCCAGCTCTGAAGTTTGCTTGATCTCTTCACTCTGATGACATTTCTTTGCAATGACACATTTGTTTCGTAAAACCAATTGACGAAAGATGCATAGTTCTCGTCAATTTATTTATTTGAGTTTGACTTGTGCTAATCGTATATACTCCTTTTAGTTGCGAGGTAGTGGAAGTGTAGTTACCTATCATTAAAAAAATCTAGTGTCCTGACAACTAGTTATCATTTGGAGCAGCAAATTGCTTTGTCGTTTCATGCTTGACTAGTTACTCATCTTCCTGAAACTGTCGGTCTTTTAGCTTGAGACTGGTTGATCCTTAAACCGTGAAAGCTGAAAAATGATTCAATATATCATCAGTTCTCATTCTCTTGTTTGGTAGGGAAATTGTTTTTTTCGATTGGTATGAACCAGAAGTAAGATGTTAAATTCATGATGGATATTTTTCATACAGTGCTTGAACCTCCACTATGGAGAAGAATATATCTTCTATCAGTTTTATCCTTTCCGGAATTTACTTGCTTCAATAATTGTGTCAGGGTGATGATGGGAAACTATTATTAACAAATTTCGTGGATGCTTTTGCTTTCTGTTTTGCAGGCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</genome_strand>
        <mrna_strand>CCGAATTGAATCTTGATGTTCTGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGGGATAAAACTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E237745" ref_strand="+" ref_description="SGN-E237745 	[cLED-19-J22]">
      <seq>ccgaattgaatcttgatgttctgaaagaggctaggatgttccactttaattctgaagtcttgacatcttcatctatgcgttcaactctttttaaagcaattacattgtcaaagaagtttggtggtcttgtattttttgacttaaatctgccattgcctctgtggagatcacgtgacgaaacaagggatttgatcaaggaagcctggcagcaagctaacatcattgaggtttcgaggcaagagcttgaatttcttcttgacgaagagcattacgagaggaaaaggaattatagacctcaatactttgcggagaattacgaacaaaccaaacaaagaagaaattattatcactatactcctgaggaaattgctcccttgtggcacgacggactgaaacttctgtttgttacagatgggacacttaggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="21719" stop="23851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22019" g_stop="22047" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22048" i_stop="23150" i_length="1103">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23151" g_stop="23551" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="430" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E237745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22019" e_stop="22047"/>
          <exon e_start="23151" e_stop="23551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGAATCTTGATGTTCTGAAAGAGGTATGTGGAAGTGTTGTTATTAAAAGTAAAGATATATTTTTATTTATGGATAGATTAAGCATGTTGTTGTTTCTATTTGTGTAGTGATGTTTGGCTTTAAATGTTAATAGAGGATGCATGAATCTAATTTGCTATGTGATTGGTATTAAACTATGTTGCGCAAAATGGCTTATGAAAGAACCCCATGGCTGCTTTTCTTAAGATATCGTCTGACCCGCTGGGGTCGTTGCTCTTATCTTGTTCTCCCGTTGTGAAACCAGTTCATTTCGTAGTTGTTAGTTTTGGAATTCCGCTGATTCCAAGTACTCTACTTTATACCTACTATTTCGTCTTGTTTTTGGTTTCTAGTCTTATTTTACCATCTCCATCATCGCACATAGGAATGTAGAGAGTAACACTAATATTCCCCATAAATGCTTATTAGTAGGTATATTGAAGTCAGACTGCTGGAGAAGCTCACTATTTATCAGTAGACACTATTGTGCTGTCGTTAACAGTTTTATTGCTCTCTCCAGCTCTGAAGTTTGCTTGATCTCTTCACTCTGATGACATTTCTTTGCAATGACACATTTGTTTCGTAAAACCAATTGACGAAAGATGCATAGTTCTCGTCAATTTATTTATTTGAGTTTGACTTGTGCTAATCGTATATACTCCTTTTAGTTGCGAGGTAGTGGAAGTGTAGTTACCTATCATTAAAAAAATCTAGTGTCCTGACAACTAGTTATCATTTGGAGCAGCAAATTGCTTTGTCGTTTCATGCTTGACTAGTTACTCATCTTCCTGAAACTGTCGGTCTTTTAGCTTGAGACTGGTTGATCCTTAAACCGTGAAAGCTGAAAAATGATTCAATATATCATCAGTTCTCATTCTCTTGTTTGGTAGGGAAATTGTTTTTTTCGATTGGTATGAACCAGAAGTAAGATGTTAAATTCATGATGGATATTTTTCATACAGTGCTTGAACCTCCACTATGGAGAAGAATATATCTTCTATCAGTTTTATCCTTTCCGGAATTTACTTGCTTCAATAATTGTGTCAGGGTGATGATGGGAAACTATTATTAACAAATTTCGTGGATGCTTTTGCTTTCTGTTTTGCAGGCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCA</genome_strand>
        <mrna_strand>CCGAATTGAATCTTGATGTTCTGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E368667" ref_strand="+" ref_description="SGN-E368667 	[TUS-22-J24]">
      <seq>ttttttttttgatataaaagggaaaagtgaaaactgcctactcattacaacagtgaagaatctatataacatcctttaaccatgagatgcacaatcaaattaactgattttgagttacaaatgggactggtttacaaagatcatgcacttacaaaaacactatggatctttcctcaagaacctataatttgtcggattaattacaacgaaatctacgtttaagtagtaacttttgcagaaaacaaggtcctgagaattggcattatggcactactaccacatcgatggtacataaacctgctctttgagattctgtgtggcgctttcagtaggaaaacctctaacagcacctattgtccactgggatattatgcctgctgcaatagcaaagcgaagctgtctctttagaacattttgatcgtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="24407" stop="23391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24116" g_stop="23691" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E368667" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24116" e_stop="23691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACAAAATGATATAATAGTGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTCTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTCTAGAACATCTTGATCGTGGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTGATATAAAAGGGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTTTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTTTAGAACATTTTGATCGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E374975" ref_strand="+" ref_description="SGN-E374975 	[TUS-36-A17]">
      <seq>ttttcatcacttgaatcaaaaccaacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttgccagaagtcgggtttttcatcgcccttcacactgcgcagcgagcagaaagaaagagagattgttgtaagaagcaaagcagtacttggaagcagagatatgatggtttataagatggacaaaagaaagcatatacacaaaccagagagatgtactcaaaaatcattctttagggtggaatataaaaattcatttattttttttattttttttttctgagttagttttatgatttaggttcaacaaggattgatcatatatgtattaccaattcatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="28635" stop="27367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28335" g_stop="27667" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E374975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28335" e_stop="27667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E228095" ref_strand="+" ref_description="SGN-E228095 	[cLED-2-J23]">
      <seq>ttttcatcacttgaatcaaaaccaacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttgccagaagtcgggtttttcatcgcccttcacactgcgcagcgagcagaaagaaagagagattgttgtaagaagcaaagcagtacttggaagcagagatatgatggtttataagatggacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="28635" stop="27524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28335" g_stop="27824" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E228095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28335" e_stop="27824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAG</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E239463" ref_strand="+" ref_description="SGN-E239463 	[cLED-23-H11]">
      <seq>ttttcatcacttgaatcaaaacctacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="28635" stop="27647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28335" g_stop="27947" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E239463" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28335" e_stop="27947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTG</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCTACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E233486" ref_strand="+" ref_description="SGN-E233486 	[cLED-9-C19]">
      <seq>gagtttggaaagaagttggttgatagacttagagatattggtgaaccatttatcgctctccatttaagatacgagaaagacatgctagcgtttactggctgcagcaacaatttgactattgaagaggctgaagaacttcgtacgatgaggtatgaagtgaaacattggaaggagaaagagatagacagcaaggaaaagcgactccagggaggctgccccatgtcccctagggaggctgctttatttctcaaagcgatgggatatctgtccacgaccagaatatacattgttgcaggggaaatttatggcaacaacagcatggatgaattccgttctcattacccgaatgtgtactctcactcaacccttgcaacaaatgaagaacttgaggctttcaagaattatcaaaaccgtcttgctgcagtagactacatggtagcccttgaaagcgatgtttttgcttacacttacgatggcaatatggcgaaggccgtgcaaggtcatagacgatttgaaggatttcggaagaccattaacccggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="29305" stop="28074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29005" g_stop="28938" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28937" i_stop="28850" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28849" g_stop="28374" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="544" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E233486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29005" e_stop="28938"/>
          <exon e_start="28849" e_stop="28374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAGGTAATCTATCTAAACACTTTTGTGTTTCTTCTTCTATTCTTTAACCAATTGATCTATGAGTAACTTGGTATATTGCTCAATTGTACAGATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</genome_strand>
        <mrna_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG........................................................................................ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 	[cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="39705" stop="40605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40005" g_stop="40305" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40005" e_stop="40305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 	[TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="45948" stop="45052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45648" g_stop="45326" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45648" e_stop="45326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGTATAATTATATGTGTATAGCAAGAAGACATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAATCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAGTTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTACATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTATGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E285494" ref_strand="+" ref_description="SGN-E285494 	[cLES-10-C23]">
      <seq>aagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaaaaggatatgaaagtttgttgaatttgatggagaatacaactagtgatagttttgatttgtattgtggtttgcttatgtataacaataattcaatggaggtgttagagaaactagatgcagcattggatagtttgaaaagggaattatttggacaagttcttcaaaagttggagaaaagagtggaaaagggaagtaagttagctttacctactcctgattttagtaagaaaattgaaaaattgaaagttgagaggaaggaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49146" stop="48110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48846" g_stop="48410" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E285494" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48846" e_stop="48410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</genome_strand>
        <mrna_strand>AAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGCTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAAGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E389540" ref_strand="+" ref_description="SGN-E389540 	[TUS-4-F1]">
      <seq>catgctgtctctagtttctctaacacctccattgaattcttgttatacataaacaaaccacaatacaaatcaaaactatcactagttgtattctctttccaattcaacaaactttcatatccttttgtgtttataggagttgtttgtgtcccaagtctttgtaacattcttccaatagtatgtgtaataaattgtgatccagcagcatacttgtcatgttcactacaactcatttcaaccattctacaaccttcttttacaaaaatgttgataaaattgttgactcttttaattcttgactcttcttgtccaattctaactttgtcatacataaatggtagtcctttccaattgtctttaccacttgttggaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="48251" stop="49227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48550" g_stop="48927" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E389540" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48550" e_stop="48927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</genome_strand>
        <mrna_strand>CATGCTGTCTCTAGTTTCTCTAACACCTCCATTGAATTCTTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCTTTCCAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E279840" ref_strand="+" ref_description="SGN-E279840 	[cLER-8-J5]">
      <seq>tcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49355" stop="48374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49055" g_stop="48674" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E279840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49055" e_stop="48674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAA</genome_strand>
        <mrna_strand>TCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E207936" ref_strand="+" ref_description="SGN-E207936 	[cLEC-34-F9]">
      <seq>aaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49617" stop="48427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49317" g_stop="48727" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E207936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49317" e_stop="48727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATAC</genome_strand>
        <mrna_strand>AAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E211022" ref_strand="+" ref_description="SGN-E211022 	[cLEC-69-E23]">
      <seq>tatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttggtaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49779" stop="48446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49479" g_stop="48746" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E211022" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49479" e_stop="48746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGAT</genome_strand>
        <mrna_strand>TATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGGTAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E284432" ref_strand="+" ref_description="SGN-E284432 	[cLER-16-J13]">
      <seq>ttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactgtgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagcggtaaagacaattggaaaggactaccatttatgtatgactaagttagaattggacaagaagagtcacgaattaaaagagtcaacatttttatcaacatctttgttaaagaaggttgtagaatggttgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49441" stop="48479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49141" g_stop="48779" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E284432" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49141" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGA</genome_strand>
        <mrna_strand>TTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTGTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGCGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACTAAGTTAGAATTGGACAAGAAGAGTCACGAATTAAAAGAGTCAACATTTTTATCAACATCTTTGTTAAAGAAGGTTGTAGAATGGTTGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E241586" ref_strand="+" ref_description="SGN-E241586 	[cLED-36-G1]">
      <seq>gcctactctttcctctccgtgcccaaaatagcgacttaactacaggcaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49753" stop="48623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49453" g_stop="48923" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E241586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49453" e_stop="48923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTG</genome_strand>
        <mrna_strand>GCCTACTCTTTCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGGCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E214796" ref_strand="+" ref_description="SGN-E214796 	[cLEC-79-F15]">
      <seq>tttctttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttgccatccaaaagcttaaacgtaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49970" stop="48722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49670" g_stop="49022" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E214796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49670" e_stop="49022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</genome_strand>
        <mrna_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTGCCATCCAAAAGCTTAAACGTAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E214709" ref_strand="+" ref_description="SGN-E214709 	[cLEC-79-N23]">
      <seq>tttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49966" stop="48722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49666" g_stop="49022" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E214709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49666" e_stop="49022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</genome_strand>
        <mrna_strand>TTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E207225" ref_strand="+" ref_description="SGN-E207225 	[cLEC-30-B4]">
      <seq>tatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttttcctttttttttttttaagatcctaatgacttatgtgaacaacatcctgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49940" stop="48803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49640" g_stop="49144" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E207225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49640" e_stop="49144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTT</genome_strand>
        <mrna_strand>TATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E278706" ref_strand="+" ref_description="SGN-E278706 	[cLER-2-C13]">
      <seq>caactcggtttcatcaccaccggctactcttccctatccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacaacattaaatcccctcttatggtccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49774" stop="48907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49474" g_stop="49207" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E278706" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49474" e_stop="49207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCA</genome_strand>
        <mrna_strand>CAACTCGGTTTCATCACCACCGGCTACTCTTCCCTATCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACAACATTAAATCCCCTCTTATGGTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E211750" ref_strand="+" ref_description="SGN-E211750 	[cLEC-66-A10]">
      <seq>tttctttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49970" stop="48916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49670" g_stop="49216" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E211750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49670" e_stop="49216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAA</genome_strand>
        <mrna_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E205572" ref_strand="+" ref_description="SGN-E205572 	[cLEC-21-C6]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaggaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatttccccaaaactcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49945" stop="48940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49240" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E205572" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAA--T---C---A-TCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACA</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAGGAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATTTCCCCAAAACTCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E205863" ref_strand="+" ref_description="SGN-E205863 	[cLEC-20-H11]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaaatttnnnccnnatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49945" stop="48941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49241" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E205863" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTC-AA--T----C--ATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGAC</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAAATTTNNNCCNNATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E206687" ref_strand="+" ref_description="SGN-E206687 	[cLEC-31-G17]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcattaccaccgcctactctttcctcttcgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataaccagctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49945" stop="48972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49272" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E206687" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAA</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATTACCACCGCCTACTCTTTCCTCTTCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACCAGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E200934" ref_strand="+" ref_description="SGN-E200934 	[cLEC-5-J14]">
      <seq>accagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtnatcttgatgaaatctaaccagacttgataatttaaaatcattagttttcgaatatcgaaaatcatcattaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49792" stop="49046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49492" g_stop="49299" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E200934" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.066" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49492" e_stop="49299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCC</genome_strand>
        <mrna_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGT-NATCTTGATGA-AATCTAACCAGACTTGAT-AA-TTT-AAAATCATT-AGT-TTTCGAATATC---GAAAAT-CATCATT-AATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E208192" ref_strand="+" ref_description="SGN-E208192 	[cLEC-37-O23]">
      <seq>cttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="49935" stop="49169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49635" g_stop="49469" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E208192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49635" e_stop="49469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTC</genome_strand>
        <mrna_strand>CTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E291211" ref_strand="+" ref_description="SGN-E291211 	[cLET-2-A20]">
      <seq>ggttacctgaacttcaatctcatttttgagttgaatttttatctcattagttatgattcgattctccacctttgtaatcctctttccaattaccctttgtagctaccctgttttattttatttttaaaaagttaatataatgtcataattgtttttcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="51972" stop="51212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51672" g_stop="51504" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E291211" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51672" e_stop="51504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</genome_strand>
        <mrna_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E544814" ref_strand="-" ref_description="SGN-E544814 	[TUS-67-F12]">
      <seq>gttttatttggacacagaaattagctgttgttagatggaggacgcattcaaccaggaaagttaatgttacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttggtgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactatccttctaggttttgttggggcctttgcccttgcctggaatggttgaagttataattcaagaactggatttgttgttgtcatcattggtttgagtttgtcccaagtgttcaaggggacacaaatgttggtttttgtgtagaataatatgctttatgatttgcactgttcccaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="53381" stop="51515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53081" g_stop="53045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52328" g_stop="51815" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="552" r_length="515" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E544814" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53081" e_stop="53045"/>
          <exon e_start="52328" e_stop="51815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACA-AAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</genome_strand>
        <mrna_strand>GTTTTATTTGGACACAGAAATTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGTTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGGTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACACAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E273027" ref_strand="+" ref_description="SGN-E273027 	[cLEM-25-P11]">
      <seq>tttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtaccgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgccttcaaccaggaaagttaatgctacaagcggagcaacttctgttccagacgacctgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="53794" stop="51698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53494" g_stop="53377" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53170" g_stop="53045" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="245" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52328" g_stop="51998" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="576" r_length="331" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E273027" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53494" e_stop="53377"/>
          <exon e_start="53170" e_stop="53045"/>
          <exon e_start="52328" e_stop="51998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTA-CGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</genome_strand>
        <mrna_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACCGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCCTTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAACTTCTGTTCCAGACGACCTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E356335" ref_strand="+" ref_description="SGN-E356335 	[cTOS-20-I4]">
      <seq>tgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaaggcttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="54015" stop="51728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53715" g_stop="53677" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53518" g_stop="53377" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="181" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53170" g_stop="53088" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53087" i_stop="52329" i_length="759">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52328" g_stop="52028" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="565" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E356335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53715" e_stop="53677"/>
          <exon e_start="53518" e_stop="53377"/>
          <exon e_start="53170" e_stop="53088"/>
          <exon e_start="52328" e_stop="52028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</genome_strand>
        <mrna_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAAGGCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E349280" ref_strand="+" ref_description="SGN-E349280 	[cTOS-2-H12]">
      <seq>tgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaagatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="54015" stop="51752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53715" g_stop="53677" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53518" g_stop="53377" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="181" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53170" g_stop="53088" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53087" i_stop="52329" i_length="759">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52328" g_stop="52052" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="541" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E349280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53715" e_stop="53677"/>
          <exon e_start="53518" e_stop="53377"/>
          <exon e_start="53170" e_stop="53088"/>
          <exon e_start="52328" e_stop="52052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCC</genome_strand>
        <mrna_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAAGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E347973" ref_strand="+" ref_description="SGN-E347973 	[cTOF-31-H12]">
      <seq>tggggttcttacgagtatgtgggaagggcctggctctgtgattcccacgacttccttagctggatcagaaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatccaangtgggtggttctcttttgacacagaaagtagcntgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaaggagnttcagttgtgcaataaccaacttaccagtgcacgccagcctactttgctgattcgtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="55692" stop="51884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55392" g_stop="55212" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54384" g_stop="54353" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="215" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54352" i_stop="53485" i_length="868">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53484" g_stop="53377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="323" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53170" g_stop="53045" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="450" r_length="127" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716">
            <donor d_prob="0.937" d_score="0.90"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52328" g_stop="52184" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="594" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E347973" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55392" e_stop="55212"/>
          <exon e_start="54384" e_stop="54353"/>
          <exon e_start="53484" e_stop="53377"/>
          <exon e_start="53170" e_stop="53045"/>
          <exon e_start="52328" e_stop="52184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTCTTATGAGTATGTGGGAAGGG-CTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAG-AAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGT-GGTGGTTCTCTTTTGACACAGAAAGTAGC-TGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTC</genome_strand>
        <mrna_strand>TGGGGTTCTTACGAGTATGTGGGAAGGGCCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACAT-CCAANGTGGGTGGTTCTCTTTTGACACAGAAAGTAGCNTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGAGNTTCAGTTGTGCAATAACCAA-CTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E207728" ref_strand="+" ref_description="SGN-E207728 	[cLEC-32-M13]">
      <seq>tttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcgaaggaaaggacaagggacctgaaacaggaatatgggagctagatttaaggtctgagtttcctgttttatttgtaccttacaaggaatcaaggctgagaattcctcattcagaaactattgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="54685" stop="53383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="73" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54008" g_stop="53683" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="399" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E207728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAAT</genome_strand>
        <mrna_strand>AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E344378" ref_strand="+" ref_description="SGN-E344378 	[cTOF-16-L22]">
      <seq>cccacacccacagcaaatggcgtgtgagaagataatctcctacatatcttacagtatatgactatgtactttcttcttcattaaggcacaaattggtttatatatcatgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56827" stop="53509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56527" g_stop="56328" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="422" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="489" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53809" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="689" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E344378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56527" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</genome_strand>
        <mrna_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E208089" ref_strand="+" ref_description="SGN-E208089 	[cLEC-34-N15]">
      <seq>gcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtggggactctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56652" stop="53570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56352" g_stop="56328" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="247" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="314" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53870" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="453" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E208089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56352" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAA</genome_strand>
        <mrna_strand>GCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGGACTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E207568" ref_strand="+" ref_description="SGN-E207568 	[cLEC-32-E21]">
      <seq>tgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56674" stop="53591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56374" g_stop="56328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="269" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="336" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53891" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="454" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E207568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56374" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAAT</genome_strand>
        <mrna_strand>TGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E544815" ref_strand="+" ref_description="SGN-E544815 	[TUS-67-F12]">
      <seq>catgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggatatgcaagtgggactactggtgatcaaccgaagcaagtgctagacgaggtagaagtacaagagttgcttatagatcatgttggccatcgctgctgttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56722" stop="53639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56422" g_stop="56328" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="317" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="384" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53939" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="454" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E544815" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56422" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGA</genome_strand>
        <mrna_strand>CATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGATATGCAAGTGGGACTACTGGTGATCAACCGAA.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACAAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E206642" ref_strand="+" ref_description="SGN-E206642 	[cLEC-31-P3]">
      <seq>ttaaatttgttggggagcaatggagcacccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttgcttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacagagatgcaagtgggactactggtgatcaacggaggcaagtgctatgacgaggtagaagtacaagagttgcttatagatcatgttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56668" stop="53654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56368" g_stop="56328" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="263" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="330" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="386" r_length="56" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E206642" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56368" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTA-GACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCAT</genome_strand>
        <mrna_strand>TTAAATTTGTTGGGGAGCAATGGAGCACCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTGCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACAGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTATGACGAGGTAGAAGTACAAGAGTTGCTTATAGATCATGTTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E302370" ref_strand="+" ref_description="SGN-E302370 	[cLEW-27-K20]">
      <seq>tgagaagataatctcctacatatcttacagggtatgactatgtactttcttcttcattaaggcacaaattggtttatatatcatgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcaaccactgttgatagggaaagtatctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctttacatgcccccttgatcagctcaactaaatcccaatcccagccacagttttatgaacaagggattgtatatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56803" stop="54010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56503" g_stop="56328" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="398" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="465" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E302370" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56503" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG</genome_strand>
        <mrna_strand>TGAGAAGATAATCTCCTACATATCTTACAGGGTATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAACCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTATCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTTTACATGCCCCCTTGATCAGCTCAACTAAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTATATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E237823" ref_strand="+" ref_description="SGN-E237823 	[cLED-18-B15]">
      <seq>ttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttcttttcatgcccccttgatcagctttcctcaatcccaatcccagccacagttttatgaacaagggattggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="56668" stop="54912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56368" g_stop="56328" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="263" r_length="222" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E237823" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56368" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG</genome_strand>
        <mrna_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTTTTCATGCCCCCTTGATCAGCTTTCCTCAATCCCAATCCCAGCCACAGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E269608" ref_strand="+" ref_description="SGN-E269608 	[cLEM-2-H21]">
      <seq>tgattcgtctacttgctcgttcatttatttcaaagactcccttgtctgatgtgtttctgcccaagcaaaaacaaagaagggcacaagtagacattgtaacaatgtccgagtctggaaatttgtcgtccatttctgaaaatggaacgagtaatagcaccaagaagttggagctgaagctaacagtaaggaagtctacaaagaaggtcttgtgtgcagaagcagacaatgattttattgattttctcttcaacttcttgacgattcctataggatcaattgaagatgttctaaaagggagttctggcttgagatgtatcgataacttctataaaagtgtggaggctttagattcgaaatggttcaatatgcctccaaagcagaatagttaccatagtgaggatacatctaatgacaactttaagacagtattactcaagcccaatgttgccacacattataattctgagtatcagctgctacagatttcagaaggaaaatcagaattttacaatttgtatgatccaaggcaacatataaggggtagtcatgttcccaaatttcgtaagttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="69572" stop="68402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69272" g_stop="68702" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E269608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69272" e_stop="68702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</genome_strand>
        <mrna_strand>TGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E212406" ref_strand="+" ref_description="SGN-E212406 	[cLEC-74-H9]">
      <seq>gatatgaatcagattaaggagatgaatgtagaagttggcaggaacgaggtgattcgtctacttgctcgttcatttatttcaaagactcccttgtctgatgtgtttctgcccaagcaaaaacaaagaagggcacaagtagacattgtaacaatgtccgagtctggaaatttgtcgtccatttctgaaaatggaacgagtaatagcaccaagaagttggagctgaagctaacagtaaggaagtctacaaagaaggtcttgtgtgcagaagcagacaatgattttattgattttctcttcaacttcttgacgattcctataggatcaattgaagatgttctaaaagggagttctggcttgagatgtatcgataacttctataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="69772" stop="68641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69472" g_stop="69425" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69424" i_stop="69274" i_length="151">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69273" g_stop="68941" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="381" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E212406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69472" e_stop="69425"/>
          <exon e_start="69273" e_stop="68941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAGGTATTGTCCTTTACCATCCGATTAATTAAAAGAATTAGTGATTACTACATTCTTAATAAAAAAAATTATGCTTTCTGATGATATGTTTTGCTGTGATTTTCGTAAATTGGCATTTGCAGCTAGTAACATGATCTTTTTCTGGACCATTTAGGTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAA</genome_strand>
        <mrna_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG.......................................................................................................................................................GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 	[cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="72493" stop="71569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72193" g_stop="71866" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72193" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATTTTAT-GTATTTTTTGCTTCTTCTTATTTCTGTTTCTATTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAAGAT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 	[cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="72555" stop="71731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72256" g_stop="72031" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72256" e_stop="72031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTGAAAATGGCTATAAAAAGAAGTCAATTTTCATTTTTTAAAACACT-AAAAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E288563" ref_strand="+" ref_description="SGN-E288563 	[cLES-8-O24]">
      <seq>tacatcgtcaatgtatatacggaggtcttcggattgggatgtatgaacctgttaaaaacttatatgttggcaaagatcatgttggggatgtgccattgtctaagaaaatacttgctgcacttacaactggtgcgttgggcattacagttgcaaatcctacagatctagttaaagtacgtcttcaagctgaagggaaattgtcagcaggcgtgccaaggcgttattctggagctctaaatgcttactcaactatagtgaaacatgaaggagttcgagctctgtggactggtcttggacccaatattgggcggaatgccatcatcaatgcagctgaattatcaagttatgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="76033" stop="77960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76333" g_stop="76382" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76383" i_stop="76471" i_length="89">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76472" g_stop="76550" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="129" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76551" i_stop="76792" i_length="242">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76793" g_stop="76926" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="263" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76927" i_stop="77570" i_length="644">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77571" g_stop="77660" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="353" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E288563" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76333" e_stop="76382"/>
          <exon e_start="76472" e_stop="76550"/>
          <exon e_start="76793" e_stop="76926"/>
          <exon e_start="77571" e_stop="77660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCTGTAAGTTATCATTTCTAGCGTAGCTTACAACATCTACATGTTTATTTTGTGGTTTTTGGTCTTTTACGGACTCTTTGCTTGGTGAGCAGGTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTGGTGAGTGCCTTTTAGATGTTTTTTGTTTATCATCAGTTTGCTCAAGAGTAAGATAGTAGAGCTTTTATTTCCATTTTGAAAACATCCCGATAGGAACTAGAAATTCAGTGTTTGATTATCAATAACGGATGTTCTGTTTTTCCTTGTATTGTTCTTTTTGCTGTTTGGTATTTCAAAATGTTTTTAAGTAATTTGGTATTTTAATATATTTTAAAGTAATTTGGTTATTCTTTGTCAAATAGGTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAGGTAATATGTCTTGTCTAGCTCAATTATTTACCAAAATTATGATAACTAACGGCAGGTAGGGTTGTGAAATTGTGTACACCTACTTTGGATCATGACTTGGAGCTAATTTGCCCCTTGAATTGAAATTCAAAACAACCTAAACAATAATCCGTGTTGCTATTTGAAGTCCCACAATGTCTACCAATAAAGCAGGCATACAATCTGCAAAAGTATTTGCCTTTAGTATGTAACATTTAACAACTATTATGACCCCAGAATTGGAGACATAACATTTCTTAATGATTCCTTTGTTGGCCTATTATTAGATAACTGATTCCTTGTTCAACTTTCTCCTTCTTTATCTAATTTTGGTGTATTTGTTCATCCTTCCCGGAGAAAAGAGTAGTGCTTTTCTTCTCCGTGTAGTTTCTGTTCTCCTGGAAATGTTAGGAAATTATGAAAATTTCCATTTCATTTAAATCAATCTAAACTCCAAGGTCAGCAGCTTACTGGACCACTTGCAAAATAATGAAAATAGAACAGGTTTCACTAGTGAAAATTTGAGTTAACTCACGTTGAGTCAATAGTTCTCCCCACAAAAAAGACTCTTATTTTAACTCTTATCTTAACCTCTTCGCATTTTGTTTTTAACCCCTTGATTTTAGGAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAA</genome_strand>
        <mrna_strand>TACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCT.........................................................................................GTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTG..................................................................................................................................................................................................................................................GTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGTCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTATCAAGTTATGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E551595" ref_strand="+" ref_description="SGN-E551595 	[cTSB-1-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="87697" stop="86452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87397" g_stop="87359" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87358" i_stop="87208" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87207" g_stop="86753" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="494" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="519"/>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E551595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87397" e_stop="87359"/>
          <exon e_start="87207" e_stop="86753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E555362" ref_strand="+" ref_description="SGN-E555362 	[cTSC-2-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="87697" stop="86452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87397" g_stop="87359" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87358" i_stop="87208" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87207" g_stop="86753" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="494" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="519"/>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E555362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87397" e_stop="87359"/>
          <exon e_start="87207" e_stop="86753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E343500" ref_strand="+" ref_description="SGN-E343500 	[cTOF-19-M23]">
      <seq>gatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgtacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctctttgaggtggttgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgatgaccaaaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="90802" stop="87118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90502" g_stop="90415" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90292" g_stop="90155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="226" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90023" g_stop="89901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="349" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89796" g_stop="89698" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="448" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89697" i_stop="89333" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89332" g_stop="89243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="538" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89242" i_stop="88935" i_length="308">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88934" g_stop="88853" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="620" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88852" i_stop="87490" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87489" g_stop="87418" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="692" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E343500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90502" e_stop="90415"/>
          <exon e_start="90292" e_stop="90155"/>
          <exon e_start="90023" e_stop="89901"/>
          <exon e_start="89796" e_stop="89698"/>
          <exon e_start="89332" e_stop="89243"/>
          <exon e_start="88934" e_stop="88853"/>
          <exon e_start="87489" e_stop="87418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</genome_strand>
        <mrna_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E244572" ref_strand="+" ref_description="SGN-E244572 	[cLED-38-H13]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcactcatgagggtctcttgaagtggaaataccctgaaatgaactcagttgactttctgtttgaggtgatcgatgatcgtgaattgctgtatctacatgaacgagggaagaagaaactaatggaggggaatagagttattttcccagatggttctgatccgtcagcctactctgataaaataatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="90327" stop="87151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90164" g_stop="90155" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90023" g_stop="89901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89796" g_stop="89698" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89697" i_stop="89333" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89332" g_stop="89243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89242" i_stop="88935" i_length="308">
            <donor d_prob="0.741" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88934" g_stop="88853" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88852" i_stop="87490" i_length="1363">
            <donor d_prob="0.261" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87489" g_stop="87451" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="443" r_length="39" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E244572" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90164" e_stop="90155"/>
          <exon e_start="90023" e_stop="89901"/>
          <exon e_start="89796" e_stop="89698"/>
          <exon e_start="89332" e_stop="89243"/>
          <exon e_start="88934" e_stop="88853"/>
          <exon e_start="87489" e_stop="87451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAG</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACTCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCAGTTGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGATCGATGATCGTGAATTGCTGTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAATAGAGTTATTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCGTCAGCCTACTCTGATAAAATAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E239863" ref_strand="+" ref_description="SGN-E239863 	[cLED-29-F4]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="90327" stop="89011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90164" g_stop="90155" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90023" g_stop="89901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89796" g_stop="89698" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89697" i_stop="89333" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89332" g_stop="89311" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="254" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E239863" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90164" e_stop="90155"/>
          <exon e_start="90023" e_stop="89901"/>
          <exon e_start="89796" e_stop="89698"/>
          <exon e_start="89332" e_stop="89311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTC</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E242569" ref_strand="+" ref_description="SGN-E242569 	[cLED-30-N1]">
      <seq>gcacagtttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacgatatatgatgctgatcacaatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggccctgaaccatgtgtctgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="92697" stop="89596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92398" g_stop="92361" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92360" i_stop="90578" i_length="1783">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90577" g_stop="90415" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="201" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90292" g_stop="90155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90023" g_stop="89901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89796" g_stop="89785" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="474" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E242569" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92398" e_stop="92361"/>
          <exon e_start="90577" e_stop="90415"/>
          <exon e_start="90292" e_stop="90155"/>
          <exon e_start="90023" e_stop="89901"/>
          <exon e_start="89796" e_stop="89785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAG</genome_strand>
        <mrna_strand>GCACAGTTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGATATATGATGCTGATCACAATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTGTCTGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E255037" ref_strand="+" ref_description="SGN-E255037 	[cLEG-31-K9]">
      <seq>agccagactatgttgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtcctccaacacctgagtggaaaagatcttctgagcttgatctgaatggtgatgctatgcctaatgacgatgacgatggaggtcctacagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccccaagatcagcaaaattatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacagtttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacgatatatgatgctgatcacaatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggccctgaaccatgtgtctgtcatcgagcgacccttttatgaacggtggagaatgatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="95768" stop="89691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95468" g_stop="95305" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95304" i_stop="92750" i_length="2555">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92749" g_stop="92630" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="284" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92629" i_stop="92408" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92407" g_stop="92361" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92360" i_stop="90578" i_length="1783">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90577" g_stop="90415" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="494" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90292" g_stop="90155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="632" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90023" g_stop="89991" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="665" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E255037" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95468" e_stop="95305"/>
          <exon e_start="92749" e_stop="92630"/>
          <exon e_start="92407" e_stop="92361"/>
          <exon e_start="90577" e_stop="90415"/>
          <exon e_start="90292" e_stop="90155"/>
          <exon e_start="90023" e_stop="89991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGAC</genome_strand>
        <mrna_strand>AGCCAGACTATGTTGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCTCCAACACCTGAGTGGAAAAGATCTTCTGAGCTTGATCTGAATGGTGATGCTATGCCTAATGACGATGACGATGGAGGTCCTACAGCTCCTTTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCCCAAGATCAGCAAAATTATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAGTTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGATATATGATGCTGATCACAATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTGTCTGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E270850" ref_strand="+" ref_description="SGN-E270850 	[cLEM-6-K4]">
      <seq>aaacatgcaaagaagtatattcttgttcattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgcacgctgccaatatctgtcagtcaggcaattaaaattttttctgacgctcgtcctcctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgcaatgccagatgacgatgatgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="96006" stop="95025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95706" g_stop="95599" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95598" i_stop="95512" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95511" g_stop="95325" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="295" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E270850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95706" e_stop="95599"/>
          <exon e_start="95511" e_stop="95325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAG</genome_strand>
        <mrna_strand>AAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E316310" ref_strand="+" ref_description="SGN-E316310 	[cTOA-25-A15]">
      <seq>gaaacaaggcatcaagcacgtaaagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgtcaaaaataaaaataaaaataaaaatgatagggtagatattttgtaattttatgttatataatgaatgtgctctattcttatcgaaagaaagaatataatccattccttcaagtggagccttggtgtaacggtaaaagctgtcattgtgttattagatcgtcacatgttcaagctgtgaaaatagttttttgtgggaatgcaatataatgttgtgtacagtagatcgaatatggtctccttgttgggtttttgttatctttttaggtgatatttcctcctatattgtgactatgcatctacttgatgcctttgtgatttatagaacacttcatcaaaaagatatggtcccctctctggacctggacagtggaaacttaatgcactanggctctacactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="97551" stop="96080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97251" g_stop="97227" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97226" i_stop="97120" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97119" g_stop="96380" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="765" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E316310" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97251" e_stop="97227"/>
          <exon e_start="97119" e_stop="96380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCATCAAGCACGTAAAGGTTGGTACATGGTAATAAAGTCATGGAGGAGAAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTAGGGCTCTACACTCTT</genome_strand>
        <mrna_strand>GAAACAAGGCATCAAGCACGTAAAG...........................................................................................................ATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTANGGCTCTACACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E223466" ref_strand="+" ref_description="SGN-E223466 	[cLEL-14-L2]">
      <seq>tttttttttttttttttgacaaaggccctatcattctcaaaatagcttctcctttttattcctagaagattacaaacaaattagtcatcaacttagttttccacttgattggcaaacaacacacattaataattgcaccaagtgtaacatatatgataatagtaacagcgaagatctaaccatgtatggataaaggtacgcaaacaaacttgtagtactttacatggtaagtaatgcaagcttattctcaggtacagcattcaactaaacatgcaaccaacatatataaaattacctcagagacaaataaatttacagactcattgtcaggtgcagaaccgcggcctctgcattgaatctgatacacgtgaaagaataaaaatcaggacaacaacaataaatcagagagaaaaaatatgccctcatcaccttttctcctccatgactttattaccatgtaccaacctttacgtgcttgatgccttgtttcctccaatctgacaatgaatagtatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="96462" stop="97579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96762" g_stop="97279" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E223466" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96762" e_stop="97279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTATTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCTCATCACCTTTTCTCCTCCATGACTTTATTACCATGTACCAACCTTTACGTGCTTGATGCCTTGTTTCCTCCAATCTGACAATGAATAGTATCGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCTCATCACCTTTTCTCCTCCATGACTTTATTACCATGTACCAACCTTTACGTGCTTGATGCCTTGTTTCCTCCAATCTGACAATGAATAGTATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E215436" ref_strand="+" ref_description="SGN-E215436 	[cLEL-20-M18]">
      <seq>tttttttttttttttttgacaaaggccctatcattctcaaaatagcttctcctttttattcctagaagattacaaacaaattagtcatcaacttagttttccacttgattggcaaacaacacacattaataattgcaccaagtgtaacatatatgataatagtaacagcgaagatctaaccatgtatggataaaggtacgcaaacaaacttgtagtactttacatggtaagtaatgcaagcttattctcaggtacagcattcaactaaacatgcaaccaacatatataaaattacctcagagacaaataaatttacagactcattgtcaggtgcagaaccgcggcctctgcattgaatctgatacacgtgaaagaataaaaatcaggacaacaacaataaatcagagagaaaaaatatgccctcatcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="96462" stop="97495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96762" g_stop="97195" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E215436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96762" e_stop="97195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTATTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCTCATCACCTTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCTCATCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E215340" ref_strand="+" ref_description="SGN-E215340 	[cLEL-20-M18]">
      <seq>tttttttttttttttgggacaaaggccctatcattctcaaaatagcttctcctttttattcctagaagattacaaacaaattagtcatcaacttagttttccacttgattggcaaacaacacacattaataattgcaccaagtgtaacatatatgataatagtaacagcgaagatctaaccatgtatggataaaggtacgcaaacaaacttgtagtactttacatggtaagtaatgcaagcttattctcaggtacagcattcaactaaacatgcaaccaacatatataaaattacctcagagacaaataaatttacagactcattgtcaggtgcagaaccgcggcctctgcattgaatctgatacacgtgaaagaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="96462" stop="97441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96762" g_stop="97141" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E215340" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96762" e_stop="97141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTATTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTGGGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E223529" ref_strand="+" ref_description="SGN-E223529 	[cLEL-14-L2]">
      <seq>ttttttttttttttttttcaaaggccctatcattctcaaaatagcttctcctttttattcctagaagattacaaacaaattagtcatcaacttagttttccacttgattggcaaacaacacacattaataattgcaccaagtgtaacatatatgataatagtaacagcgaagatctaaccatgtatggataaaggtacgcaaacaaacttgtagtactttacatggtaagtaatgcaagcttattctcaggtacagcattcaactaaacatgcaaccaacatatataaaattacctcagagacaaataaatttacagactcattgtcaggtgcagaaccgcggcctctgcattgaatctgatacacgtgaaagaataaaaatcaggacaacaacaataaatcagagagaaaaaatatgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="96463" stop="97484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96763" g_stop="97184" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E223529" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96763" e_stop="97184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTTATTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTCAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E297138" ref_strand="+" ref_description="SGN-E297138 	[cLET-29-G5]">
      <seq>cagttctttgtacggtgaagcgtgaagttttcttctggttgtcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaggatgtgattgatttattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="104398" stop="98782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104098" g_stop="104007" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104006" i_stop="99523" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99522" g_stop="99082" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="533" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E297138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104098" e_stop="104007"/>
          <exon e_start="99522" e_stop="99082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</genome_strand>
        <mrna_strand>CAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTGTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E545671" ref_strand="-" ref_description="SGN-E545671 	[TUS-68-K7]">
      <seq>ctctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaggatgtgattgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="104594" stop="98794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104294" g_stop="104007" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104006" i_stop="99523" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99522" g_stop="99085" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="726" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E545671" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545671" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104294" e_stop="104007"/>
          <exon e_start="99522" e_stop="99085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAA</genome_strand>
        <mrna_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E545672" ref_strand="+" ref_description="SGN-E545672 	[TUS-68-K7]">
      <seq>ctctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaagatgtgattgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="104594" stop="98794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104294" g_stop="104007" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104006" i_stop="99523" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99522" g_stop="99086" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="725" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E545672" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104294" e_stop="104007"/>
          <exon e_start="99522" e_stop="99086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAA</genome_strand>
        <mrna_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAAGATGTGATTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E310587" ref_strand="+" ref_description="SGN-E310587 	[cLEZ-19-H18]">
      <seq>tctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="104593" stop="98902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104293" g_stop="104007" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104006" i_stop="99523" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99522" g_stop="99202" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="608" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E310587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104293" e_stop="104007"/>
          <exon e_start="99522" e_stop="99202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTT</genome_strand>
        <mrna_strand>TCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 	[cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="112967" stop="104776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112667" g_stop="112599" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112598" i_stop="105485" i_length="7114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105484" g_stop="105076" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="481" r_length="411" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112667" e_stop="112599"/>
          <exon e_start="105484" e_stop="105076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAG-ATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTCAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATGTTATATTGAAATGTTAAGGCTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCGAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGTTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATCGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTAAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACTTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTATAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTATGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTATTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATCTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGATAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCAGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCGGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTCCCATTTGTATGGTCGGATGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGATAATTAAAAGTGCATGAACGTAACTATCCCACTCATGATTTGAAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGATCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAGTTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGACGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAAACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCGGTGGAGGCAAGATCTTCCTTTCTTGACAAAATTAAGGGAAGACAGTTCGATGATGAGAAACTGCGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGAGTATGTGTACCCCGCGTCGATGGTTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGCGCAATCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGATTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAAAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCAGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCCCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGAAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCTTATCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGACCCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCGTTCGAGGTCAGACCTTGGGGTACTGATCTCTTGAGGGATTCGATGGAAAAAGTGAGGTCTATTCGAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCAACAATGAAAGGGGTGATACGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAACTTGTCTTATGAAGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAACCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGCACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTCTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGAAATAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGCGAGAGATAGATTGATCGATTGAGAGAGAGAGAGAGTCGAACGAGGAAGAAGAATATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATAAGTAAACTCTTAATAGTGATTGATATGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTA-TTCG-GTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 	[TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="112968" stop="105019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112668" g_stop="112599" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112598" i_stop="105485" i_length="7114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105484" g_stop="105317" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="239" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112668" e_stop="112599"/>
          <exon e_start="105484" e_stop="105317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAG-ATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTCAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATGTTATATTGAAATGTTAAGGCTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCGAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGTTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATCGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTAAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACTTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTATAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTATGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTATTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATCTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGATAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCAGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCGGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTCCCATTTGTATGGTCGGATGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGATAATTAAAAGTGCATGAACGTAACTATCCCACTCATGATTTGAAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGATCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAGTTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGACGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAAACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCGGTGGAGGCAAGATCTTCCTTTCTTGACAAAATTAAGGGAAGACAGTTCGATGATGAGAAACTGCGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGAGTATGTGTACCCCGCGTCGATGGTTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGCGCAATCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGATTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAAAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCAGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCCCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGAAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCTTATCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGACCCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCGTTCGAGGTCAGACCTTGGGGTACTGATCTCTTGAGGGATTCGATGGAAAAAGTGAGGTCTATTCGAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCAACAATGAAAGGGGTGATACGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAACTTGTCTTATGAAGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAACCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGCACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTCTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGAAATAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGCGAGAGATAGATTGATCGATTGAGAGAGAGAGAGAGTCGAACGAGGAAGAAGAATATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATAAGTAAACTCTTAATAGTGATTGATATGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 	[LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="107146" stop="107923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107446" g_stop="107622" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107446" e_stop="107622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGTCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGATAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTTCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 	[TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="108627" stop="109938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108927" g_stop="109638" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108927" e_stop="109638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 	[TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="108627" stop="109821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108927" g_stop="109521" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108927" e_stop="109521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 	[cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="108627" stop="109751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108927" g_stop="109451" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108927" e_stop="109451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 	[TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="108698" stop="109975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108998" g_stop="109676" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108998" e_stop="109676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 	[cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="108698" stop="109655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108998" g_stop="109355" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108998" e_stop="109355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 	[cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109146" stop="110404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109446" g_stop="110104" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109446" e_stop="110104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 	[cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109234" stop="111242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109498" g_stop="110025" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110026" i_stop="110769" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110770" g_stop="110942" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="694" r_length="173" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109498" e_stop="110025"/>
          <exon e_start="110770" e_stop="110942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-T-TACAA-CAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 	[cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109215" stop="110576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109515" g_stop="110276" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109515" e_stop="110276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 	[cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109215" stop="110475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109515" g_stop="110175" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109515" e_stop="110175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109618" stop="110544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109918" g_stop="110248" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109918" e_stop="110248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 	[cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109825" stop="110983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110125" g_stop="110683" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110125" e_stop="110683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 	[cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109829" stop="111192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110129" g_stop="110892" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110129" e_stop="110892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 	[cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109909" stop="111298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110209" g_stop="110998" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110209" e_stop="110998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 	[cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109911" stop="111044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110211" g_stop="110744" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110211" e_stop="110744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 	[cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="109985" stop="111282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110285" g_stop="110982" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110285" e_stop="110982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 	[cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="110546" stop="111865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110846" g_stop="111565" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110846" e_stop="111565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 	[cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="110549" stop="111812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110849" g_stop="111512" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110849" e_stop="111512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTT-CCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTT-GCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 	[cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="111869" stop="110716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111569" g_stop="111016" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111569" e_stop="111016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 	[cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="+" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="110904" stop="111937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111204" g_stop="111636" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111204" e_stop="111636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 	[cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="112228" stop="111343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111928" g_stop="111643" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111928" e_stop="111643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E368582" ref_strand="-" ref_description="SGN-E368582 	[TUS-23-F24]">
      <seq>acggatgctaacaagtgaatcaaacttgaattaaagttgtattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacataaatccacacaaaaagaagaaaggcgtaacgatctgggcactgtcaagaccacaattgcaagctcacattaaaggatcagttaagtgcaaaggaaaccaacaaaaatcgcagattgcaatgcaagtaacctaaaataacagatcttactcaacactaacctttaaattgcaatggcgagagaaaattgaagtcaccgaaaaaaattgcaatcacgagagagaaaaaattgcagtcgcgagagagaaaaaaaatttgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="121193" stop="119826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121028" g_stop="120901" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120900" i_stop="120670" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120669" g_stop="120614" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="184" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120613" i_stop="120536" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120535" g_stop="120126" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="591" r_length="407" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E368582" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121028" e_stop="120901"/>
          <exon e_start="120669" e_stop="120614"/>
          <exon e_start="120535" e_stop="120126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</genome_strand>
        <mrna_strand>ACGGATGCTAACAAGTGAATCAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACATAAATCCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGGAAACCAACAAAAATCGCAGATTGCAATGCAAGTAACCTAAAATAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCACC-GAAAAAAATTGCA-AT-CACGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAAAAAAATTTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E243672" ref_strand="-" ref_description="SGN-E243672 	[cLED-34-H18]">
      <seq>tattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacataaatccacacaaaaagaagaaaggcgtaacgatctgggcactgtcaagaccacaattgcaagctcacattaaaggatcagttaagtgcaaaggaaaccaacaaaaatcgcagattgcaatgcaagtaacctaaaataacagatcttactcaacactaacctttaaattgcaatggcgagagaaaattgaagtcaccgaaaaaaattgcaatcacgagagagaaaaaattgcagtcgcgagagagaaaaaaaatttgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="121154" stop="119826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120989" g_stop="120901" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120900" i_stop="120670" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120669" g_stop="120614" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="145" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120613" i_stop="120536" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120535" g_stop="120126" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="552" r_length="407" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E243672" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243672" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120989" e_stop="120901"/>
          <exon e_start="120669" e_stop="120614"/>
          <exon e_start="120535" e_stop="120126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</genome_strand>
        <mrna_strand>TATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACATAAATCCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGGAAACCAACAAAAATCGCAGATTGCAATGCAAGTAACCTAAAATAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCACC-GAAAAAAATTGCA-AT-CACGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAAAAAAATTTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Sr7sxp/sgn_ests_tomato" ref_id="SGN-E253404" ref_strand="-" ref_description="SGN-E253404 	[cLEG-24-G18]">
      <seq>gtgaactaaaattgaattgaagttgtattacacaaatactaacaagtgaattaaacatgaattaaagctgtattacactaatgctaacaagtgaattaaacttgaattaaaattgtattacacagatgttaacaagtgaattaaatcggaattaaagttgtattacacggatgctaacaagtgaatcaaacttgaattaaagttgtattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-T8ChX/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 sequenced_by:sistemasgenomicos">
        <position start="121359" stop="120090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121194" g_stop="120901" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120900" i_stop="120670" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120669" g_stop="120614" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="350" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120613" i_stop="120536" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120535" g_stop="120390" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="496" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-E253404" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253404" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121194" e_stop="120901"/>
          <exon e_start="120669" e_stop="120614"/>
          <exon e_start="120535" e_stop="120390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAAAATCTAAATTAAAAATTTATCACACAAATCCTAACAAGTGAATCAAACATGAAAATAAGTTGTATTACACATATGCAAACAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTGAATTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACAT</genome_strand>
        <mrna_strand>GTGAACTAAAATTGAATTGAAGTTGTATTACACAAATACTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACACTAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTACACAGATGTTAACAAGTGAATTAAATCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAATCAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>98</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5369" PGL_stop="5085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5369" e_stop="5085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="5369" e_stop="5085" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5369" stop="5085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGATGATAGATTAAACTCCAAGAACTTGCAACTAATTTCATAACAGATTGACAGGCTTCGAATACAGCCTACAAAGAGAAAAAAACACGAGTATGTTCATCCACAAGGAAAAATAATACAAGACAACTTCCATTTATGAGAGCTGCATCCTCTTTTATTTGACACATTCATGCATATAACTTCAAGTAGCTTTACAGACATTTGATCTGCACCCGAATGTTCATTCTTCAGCAACAGTATACTCCATCAAAATTGCAGCAGTTCGATACCCAAGTTAACTGTG</gDNA_template>
            <first_frame> *  D  D  R  L  N  S  K  N  L  Q  L  I  S  *  Q  I  D  R  L  R  I  Q  P  T  K  R  K  K  H  E  Y  V  H  P  Q  G  K  I  I  Q  D  N  F  H  L  *  E  L  H  P  L  L  F  D  T  F  M  H  I  T  S  S  S  F  T  D  I  *  S  A  P  E  C  S  F  F  S  N  S  I  L  H  Q  N  C  S  S  S  I  P  K  L  T  V </first_frame>
            <second_frame>  R  M  I  D  *  T  P  R  T  C  N  *  F  H  N  R  L  T  G  F  E  Y  S  L  Q  R  E  K  N  T  S  M  F  I  H  K  E  K  *  Y  K  T  T  S  I  Y  E  S  C  I  L  F  Y  L  T  H  S  C  I  *  L  Q  V  A  L  Q  T  F  D  L  H  P  N  V  H  S  S  A  T  V  Y  S  I  K  I  A  A  V  R  Y  P  S  *  L   </second_frame>
            <third_frame>   G  *  *  I  K  L  Q  E  L  A  T  N  F  I  T  D  *  Q  A  S  N  T  A  Y  K  E  K  K  T  R  V  C  S  S  T  R  K  N  N  T  R  Q  L  P  F  M  R  A  A  S  S  F  I  *  H  I  H  A  Y  N  F  K  *  L  Y  R  H  L  I  C  T  R  M  F  I  L  Q  Q  Q  Y  T  P  S  K  L  Q  Q  F  D  T  Q  V  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5086" PGL_stop="5370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5086" e_stop="5370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="5086" e_stop="5370" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5086" stop="5370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5086" stop="5370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5086" stop="5288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</gDNA_template>
            <first_frame> T  V  N  L  G  I  E  L  L  Q  F  *  W  S  I  L  L  L  K  N  E  H  S  G  A  D  Q  M  S  V  K  L  L  E  V  I  C  M  N  V  S  N  K  R  G  C  S  S  H  K  W  K  L  S  C  I  I  F  P  C  G  *  T  Y  S  C  F  F  L  F  V  G  C  I  R  S  L  S  I  C  Y  E  I  S  C  K  F  L  E  F  N  L  S  S  * </first_frame>
            <second_frame>  Q  L  T  W  V  S  N  C  C  N  F  D  G  V  Y  C  C  *  R  M  N  I  R  V  Q  I  K  C  L  *  S  Y  L  K  L  Y  A  *  M  C  Q  I  K  E  D  A  A  L  I  N  G  S  C  L  V  L  F  F  L  V  D  E  H  T  R  V  F  F  S  L  *  A  V  F  E  A  C  Q  S  V  M  K  L  V  A  S  S  W  S  L  I  Y  H  P   </second_frame>
            <third_frame>   S  *  L  G  Y  R  T  A  A  I  L  M  E  Y  T  V  A  E  E  *  T  F  G  C  R  S  N  V  C  K  A  T  *  S  Y  M  H  E  C  V  K  *  K  R  M  Q  L  S  *  M  E  V  V  L  Y  Y  F  S  L  W  M  N  I  L  V  F  F  S  L  C  R  L  Y  S  K  P  V  N  L  L  *  N  *  L  Q  V  L  G  V  *  S  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16339" PGL_stop="17253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16339" e_stop="17253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="16339" e_stop="17253" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16339" stop="16996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16601" stop="17253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATT</gDNA_template>
            <first_frame> C  Y  P  F  P  Q  A  I  P  L  Y  S  F  L  N  T  H  H  K  P  *  K  F  F  E  I  K  Y  L  K  I  I  *  K  F  N  L  S  *  N  S  I  H  G  F  I  *  E  E  I  L  I  S  P  S  *  K  K  S  T  K  F  T  A  F  Y  S  *  S  *  A  K  I  K  N  G  Y  F  V  S  F  Q  V  S  Y  G  V  V  Y  L  L  F  L  L  Q  N  Y  P  I  *  G  E  N  V  I  W  F  W  R  F  W  *  R  F  K  L  *  V  S  D  C  T  L  W  *  C  *  G  C  *  W  W  Y  T  N  E  W  F  N  G  F  *  C  W  K  N  L  E  Q  E  T  L  *  A  N  *  W  K  S  K  K  N  G  V  F  F  I  A  F  C  V  F  I  V  K  R  K  W  G  W  I  C  F  C  D  G  T  Y  W  I  S  F  *  C  V  *  W  W  L  I  W  A  I  G  *  *  K  N  E  V  S  C  C  R  I  *  Y  I  Y  G  *  E  I  W  *  C  E  *  *  P  C  W  C  *  F  K  Q  L  Y  I  C  E  S  E  *  C  *  F  C  *  I  G  A  N  E  *  W  *  K  D  A  I  L  D  *  L  *  S  K  F  K  E  I  R  N  Q  V  E  Q  I  R  *  H  K  A  S  *  Y  I  T  F  L  P  Y  *  Y  V  T  N  V  E  R  G  *  I </first_frame>
            <second_frame>  V  T  H  F  P  K  Q  F  P  S  T  P  F  S  I  L  I  T  N  P  R  N  S  L  R  *  N  T  S  K  S  Y  K  N  L  I  F  L  E  I  L  Y  M  G  S  F  K  K  K  S  *  *  V  P  V  E  K  R  V  Q  S  L  Q  L  S  I  A  K  V  E  P  R  S  R  M  G  T  L  S  A  S  R  Y  L  M  V  L  F  I  F  C  F  Y  F  R  T  I  Q  S  E  E  K  M  S  F  G  F  G  D  F  G  K  D  S  N  F  E  S  Q  I  A  L  Y  G  D  A  K  V  V  N  G  G  I  Q  M  S  G  S  M  G  F  S  A  G  R  I  L  N  K  K  P  F  K  L  I  D  G  N  P  R  K  M  V  S  F  S  L  H  F  V  F  S  L  S  R  E  N  G  D  G  F  A  F  V  M  V  P  I  G  Y  P  F  D  V  F  D  G  G  S  F  G  L  L  G  N  R  K  M  K  F  L  A  V  E  F  D  T  F  M  D  E  K  Y  G  D  V  N  D  N  H  V  G  V  D  L  S  S  F  I  S  V  K  V  S  N  V  S  S  V  K  L  G  L  M  N  S  G  E  K  M  Q  S  W  I  D  Y  E  A  S  S  K  R  L  E  I  R  L  S  K  L  G  D  I  K  P  V  D  T  L  L  S  C  P  I  D  M  S  Q  M  W  K  E  D  E   </second_frame>
            <third_frame>   L  P  I  S  P  S  N  S  P  L  L  L  S  Q  Y  S  S  Q  T  L  E  I  L  *  D  K  I  P  Q  N  H  I  K  I  *  S  F  L  K  F  Y  T  W  V  H  L  R  R  N  L  D  K  S  Q  L  K  K  E  Y  K  V  Y  S  F  L  *  L  K  L  S  Q  D  Q  E  W  V  L  C  Q  L  P  G  I  L  W  C  C  L  S  S  V  F  T  S  E  L  S  N  L  R  R  K  C  H  L  V  L  E  I  L  V  K  I  Q  T  L  S  L  R  L  H  F  M  V  M  L  R  L  L  M  V  V  Y  K  *  V  V  Q  W  V  L  V  L  E  E  S  *  T  R  N  P  L  S  *  L  M  E  I  Q  E  K  W  C  L  F  H  C  I  L  C  F  H  C  Q  E  K  M  G  M  D  L  L  L  *  W  Y  L  L  D  I  L  L  M  C  L  M  V  A  H  L  G  Y  W  V  I  E  K  *  S  F  L  L  *  N  L  I  H  L  W  M  R  N  M  V  M  *  M  I  T  M  L  V  L  I  *  A  A  L  Y  L  *  K  *  V  M  L  V  L  L  N  W  G  *  *  I  V  V  K  R  C  N  L  G  L  I  M  K  Q  V  Q  R  D  *  K  S  G  *  A  N  *  V  T  *  S  Q  L  I  H  Y  F  L  A  L  L  I  C  H  K  C  G  K  R  M  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16496" stop="17251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPVEKRVQSLQLSIAKVEPRSRMGTLSASRYLMVLFIFCFYFRTIQSEEKMSFGFGDFGKDSNFESQIALYGDAKVVNGGIQMSGSMGFSAGRILNKKPFKLIDGNPRKMVSFSLHFVFSLSRENGDGFAFVMVPIGYPFDVFDGGSFGLLGNRKMKFLAVEFDTFMDEKYGDVNDNHVGVDLSSFISVKVSNVSSVKLGLMNSGEKMQSWIDYEASSKRLEIRLSKLGDIKPVDTLLSCPIDMSQMWKEDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21288" PGL_stop="23637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21288" e_stop="22047"/>
            <exon e_start="23151" e_stop="23637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21288" e_stop="22047" e_length="760"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="22048" i_stop="23150" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="23151" e_stop="23637" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21288" stop="21833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21309" stop="21888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="22033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21378" stop="21830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22019" stop="22047"/>
              <exon start="23151" stop="23637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22019" stop="22047"/>
              <exon start="23151" stop="23551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTGATGTTCTGAAAGAG : GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</gDNA_template>
            <first_frame> T  *  Q  K  H  H  G  N  N  T  F  S  S  S  I  S  S  S  S  S  F  S  Q  F  T  K  P  H  H  F  L  L  L  L  Q  I  S  L  Q  N  K  S  T  Q  V  H  H  Q  *  P  P  H  H  Y  P  R  T  P  Y  P  L  S  P  W  P  *  K  I  I  H  P  H  N  F  K  K  I  K  N  P  K  R  F  K  L  *  Y  Q  H  C  R  I  Q  H  P  N  G  R  N  *  *  L  *  *  W  G  *  F  S  I  P  K  P  T  F  G  L  L  F  W  C  S  A  E  G  V  C  A  N  S  E  S  I  T  R  A  N  G  *  R  *  V  F  R  V  E  N  V  A  V  E  S  T  *  V  C  *  S  S  W  W  T  S  I  *  C  C  Y  I  S  C  *  A  W  W  *  S  C  I  Y  G  E  S  W  E  *  *  V  R  T  R  N  G  F  V  N  E  *  R  E  S  A  N  K  G  C  Q  I  *  *  *  Y  E  D  W  M  *  L  Y  G  N  *  V  *  R  W  E  N  E  G  G  E  S  S  R  L  C  *  G  F  T  A  *  L  R  I  E  S  *  C  S  E  R   : G  *  D  V  P  L  *  F  *  S  L  D  I  F  I  Y  A  F  N  S  F  *  S  N  Y  I  V  K  E  V  W  W  S  C  I  F  *  L  K  S  A  I  A  S  V  E  I  T  *  R  N  K  G  F  D  Q  G  S  L  A  A  S  *  H  H  *  G  F  E  A  R  A  *  I  S  S  *  R  R  A  L  R  E  E  K  E  L  *  T  S  I  L  C  G  E  L  R  T  N  Q  T  K  K  K  L  L  S  L  Y  S  *  G  N  C  S  L  V  A  R  R  T  E  T  S  V  C  Y  R  W  D  T  *  D  S  L  L  F  P  F  F  *  W  G  G  C  W  Y  R  R  C  A  H  N  T  V  Y  L  *  *  N  W  F   </first_frame>
            <second_frame>  H  S  K  N  T  M  A  T  I  H  F  L  P  Q  S  L  P  H  H  H  S  H  N  S  L  N  P  T  I  F  F  S  S  S  K  F  P  Y  R  T  N  P  P  K  S  T  T  N  D  H  P  T  T  T  Q  E  P  P  T  P  S  R  R  G  R  K  K  S  S  T  P  T  T  S  K  K  S  R  T  P  K  D  S  N  F  D  I  N  I  A  E  S  N  T  Q  M  E  E  I  D  D  Y  D  D  G  V  D  F  P  Y  P  N  P  P  L  V  C  C  F  G  A  A  Q  K  E  F  V  P  T  V  R  V  S  P  E  Q  M  D  K  D  K  Y  S  E  W  K  M  L  Q  W  N  P  P  E  F  V  R  A  P  G  G  P  P  S  N  V  A  I  S  H  V  R  L  G  G  R  A  A  F  M  G  K  V  G  S  D  E  L  G  Q  E  M  V  L  L  M  N  K  E  K  V  Q  T  R  A  V  K  F  S  D  S  M  R  T  G  C  S  Y  M  E  I  K  F  K  D  G  K  M  R  V  E  K  V  Q  D  S  A  E  D  S  L  L  S  S  E  L  N  L  D  V  L  K  E  :  A  R  M  F  H  F  N  S  E  V  L  T  S  S  S  M  R  S  T  L  F  K  A  I  T  L  S  K  K  F  G  G  L  V  F  F  D  L  N  L  P  L  P  L  W  R  S  R  D  E  T  R  D  L  I  K  E  A  W  Q  Q  A  N  I  I  E  V  S  R  Q  E  L  E  F  L  L  D  E  E  H  Y  E  R  K  R  N  Y  R  P  Q  Y  F  A  E  N  Y  E  Q  T  K  Q  R  R  N  Y  Y  H  Y  T  P  E  E  I  A  P  L  W  H  D  G  L  K  L  L  F  V  T  D  G  T  L  R  I  H  Y  Y  S  P  S  F  D  G  V  V  V  G  T  E  D  V  L  I  T  P  F  T  C  D  R  T  G  S  </second_frame>
            <third_frame>   I  A  K  T  P  W  Q  Q  Y  I  F  F  L  N  L  F  L  I  I  I  L  T  I  H  *  T  P  P  F  S  S  P  P  P  N  F  L  T  E  Q  I  H  P  S  P  P  P  M  T  T  P  P  L  P  K  N  P  L  P  P  L  A  V  A  V  K  N  H  P  P  P  Q  L  Q  K  N  Q  E  P  Q  K  I  Q  T  L  I  S  T  L  Q  N  P  T  P  K  W  K  K  L  M  I  M  M  M  G  L  I  F  H  T  Q  T  H  L  W  S  V  V  L  V  Q  R  R  R  S  L  C  Q  Q  *  E  Y  H  P  S  K  W  I  K  I  S  I  Q  S  G  K  C  C  S  G  I  H  L  S  L  L  E  L  L  V  D  L  H  L  M  L  L  Y  L  M  L  G  L  V  V  E  L  H  L  W  G  K  L  G  V  M  S  *  D  K  K  W  F  C  *  *  I  K  R  K  C  K  Q  G  L  S  N  L  V  I  V  *  G  L  D  V  V  I  W  K  L  S  L  K  M  G  K  *  G  W  R  K  F  K  T  L  L  R  I  H  C  L  A  P  N  *  I  L  M  F  *  K  R :   L  G  C  S  T  L  I  L  K  S  *  H  L  H  L  C  V  Q  L  F  L  K  Q  L  H  C  Q  R  S  L  V  V  L  Y  F  L  T  *  I  C  H  C  L  C  G  D  H  V  T  K  Q  G  I  *  S  R  K  P  G  S  K  L  T  S  L  R  F  R  G  K  S  L  N  F  F  L  T  K  S  I  T  R  G  K  G  I  I  D  L  N  T  L  R  R  I  T  N  K  P  N  K  E  E  I  I  I  T  I  L  L  R  K  L  L  P  C  G  T  T  D  *  N  F  C  L  L  Q  M  G  H  L  G  F  I  T  I  P  L  L  L  M  G  W  L  L  V  Q  K  M  C  S  *  H  R  L  L  V  I  E  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21289" stop="22047"/>
                    <exon start="23151" stop="23636"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSKNTMATIHFLPQSLPHHHSHNSLNPTIFFSSSKFPYRTNPPKSTTNDHPTTTQEPPTPSRRGRKKSSTPTTSKKSRTPKDSNFDINIAESNTQMEEIDDYDDGVDFPYPNPPLVCCFGAAQKEFVPTVRVSPEQMDKDKYSEWKMLQWNPPEFVRAPGGPPSNVAISHVRLGGRAAFMGKVGSDELGQEMVLLMNKEKVQTRAVKFSDSMRTGCSYMEIKFKDGKMRVEKVQDSAEDSLLSSELNLDVLKEARMFHFNSEVLTSSSMRSTLFKAITLSKKFGGLVFFDLNLPLPLWRSRDETRDLIKEAWQQANIIEVSRQELEFLLDEEHYERKRNYRPQYFAENYEQTKQRRNYYHYTPEEIAPLWHDGLKLLFVTDGTLRIHYYSPSFDGVVVGTEDVLITPFTCDRTGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24116" PGL_stop="23691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24116" e_stop="23691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="24116" e_stop="23691" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24116" stop="23691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACAAAATGATATAATAGTGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTCTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTCTAGAACATCTTGATCGTGGTA</gDNA_template>
            <first_frame> A  T  K  *  Y  N  S  E  K  *  K  L  P  T  H  Y  N  S  E  E  S  I  *  H  P  L  T  M  R  C  T  I  K  L  T  D  F  E  L  Q  M  G  L  V  Y  K  D  H  A  L  T  K  T  L  W  I  F  P  Q  E  P  I  I  C  R  I  N  Y  N  E  I  Y  V  *  V  V  T  S  A  E  N  K  V  L  R  I  G  I  M  A  L  L  P  H  R  W  Y  I  N  L  L  F  E  I  L  C  G  A  F  S  R  K  T  S  N  S  T  Y  C  P  L  G  Y  Y  A  C  C  N  S  K  A  K  L  S  L  *  N  I  L  I  V  V </first_frame>
            <second_frame>  P  Q  N  D  I  I  V  K  S  E  N  C  L  L  I  T  T  V  K  N  L  Y  N  I  L  *  P  *  D  A  Q  S  N  *  L  I  L  S  Y  K  W  D  W  F  T  K  I  M  H  L  Q  K  H  Y  G  S  F  L  K  N  L  *  F  V  G  L  I  T  T  K  S  T  F  K  *  *  L  L  Q  K  T  R  S  *  E  L  A  L  W  H  Y  Y  H  I  D  G  T  *  T  C  S  L  R  F  C  V  A  L  S  V  G  K  P  L  T  A  P  I  V  H  W  D  I  M  P  A  A  I  A  K  R  S  C  L  S  R  T  S  *  S  W   </second_frame>
            <third_frame>   H  K  M  I  *  *  *  K  V  K  T  A  Y  S  L  Q  Q  *  R  I  Y  I  T  S  F  N  H  E  M  H  N  Q  I  N  *  F  *  V  T  N  G  T  G  L  Q  R  S  C  T  Y  K  N  T  M  D  L  S  S  R  T  Y  N  L  S  D  *  L  Q  R  N  L  R  L  S  S  N  F  C  R  K  Q  G  P  E  N  W  H  Y  G  T  T  T  T  S  M  V  H  K  P  A  L  *  D  S  V  W  R  F  Q  *  E  N  L  *  Q  H  L  L  S  T  G  I  L  C  L  L  Q  *  Q  S  E  A  V  S  L  E  H  L  D  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28335" PGL_stop="27667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28335" e_stop="27667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28335" e_stop="27667" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="27667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="27824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="27947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</gDNA_template>
            <first_frame> F  S  S  L  E  S  K  P  T  I  I  L  I  H  F  L  H  F  F  R  F  N  F  V  R  L  I  D  S  L  D  K  G  E  I  S  W  E  E  F  A  S  K  V  K  A  L  Q  S  N  R  L  G  A  P  Y  L  R  Q  A  G  E  S  P  R  L  E  E  N  F  Y  A  N  P  L  P  G  C  L  C  N  R  S  H  E  E  A  S  K  Q  L  N  K  R  P  R  L  R  V  A  S  Q  R  *  V  L  S  M  I  I  M  W  *  I  S  S  I  S  I  Y  M  F  Y  K  W  P  I  R  G  C  Q  K  S  G  F  S  S  P  F  T  L  R  S  E  Q  K  E  R  E  I  V  V  R  S  K  A  V  L  G  S  R  D  M  M  V  Y  K  M  D  K  R  K  H  I  H  K  P  E  R  C  T  Q  K  S  F  F  R  V  E  Y  K  N  S  F  I  F  F  I  F  F  F  *  V  S  F  M  I  *  V  Q  Q  G  L  I  I  Y  V  L  P  I  H  E  K </first_frame>
            <second_frame>  F  H  H  L  N  Q  N  Q  Q  *  Y  *  Y  I  F  F  I  F  S  G  S  T  L  *  D  *  S  T  R  *  I  K  V  K  S  L  G  K  S  L  L  Q  K  L  R  P  Y  N  P  T  D  *  E  H  L  T  *  D  K  P  V  N  H  H  D  *  R  R  T  F  T  Q  I  L  Y  Q  V  A  C  V  I  D  H  T  K  K  P  V  N  N  S  T  R  D  Q  D  *  G  L  L  H  K  D  R  Y  F  Q  *  S  *  C  G  R  L  V  Q  Y  Q  Y  T  C  S  T  N  G  L  *  G  V  A  R  S  R  V  F  H  R  P  S  H  C  A  A  S  R  K  K  E  R  L  L  *  E  A  K  Q  Y  L  E  A  E  I  *  W  F  I  R  W  T  K  E  S  I  Y  T  N  Q  R  D  V  L  K  N  H  S  L  G  W  N  I  K  I  H  L  F  F  L  F  F  F  S  E  L  V  L  *  F  R  F  N  K  D  *  S  Y  M  Y  Y  Q  F  M  K   </second_frame>
            <third_frame>   F  I  T  *  I  K  T  N  N  N  T  D  T  F  S  S  F  F  Q  V  Q  L  C  K  I  D  R  L  V  R  *  R  *  N  L  L  G  R  V  C  F  K  S  *  G  L  T  I  Q  Q  I  R  S  T  L  P  K  T  S  R  *  I  T  T  I  R  G  E  L  L  R  K  S  F  T  R  L  L  V  *  S  I  T  R  R  S  Q  *  T  T  Q  Q  E  T  K  T  E  G  C  F  T  K  I  G  T  F  N  D  H  N  V  V  D  *  F  N  I  N  I  H  V  L  Q  M  A  Y  K  G  L  P  E  V  G  F  F  I  A  L  H  T  A  Q  R  A  E  R  K  R  D  C  C  K  K  Q  S  S  T  W  K  Q  R  Y  D  G  L  *  D  G  Q  K  K  A  Y  T  Q  T  R  E  M  Y  S  K  I  I  L  *  G  G  I  *  K  F  I  Y  F  F  Y  F  F  F  L  S  *  F  Y  D  L  G  S  T  R  I  D  H  I  C  I  T  N  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28335" stop="28024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLESKPTIILIHFLHFFRFNFVRLIDSLDKGEISWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEASKQLNKRPRLRVASQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27996" stop="27730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSISIYMFYKWPIRGCQKSGFSSPFTLRSEQKEREIVVRSKAVLGSRDMMVYKMDKRKHIHKPERCTQKSFFRVEYKNSFIFFIFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29005" PGL_stop="28374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29005" e_stop="28938"/>
            <exon e_start="28849" e_stop="28374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29005" e_stop="28938" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28937" i_stop="28850" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28849" e_stop="28374" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29005" stop="28938"/>
              <exon start="28849" stop="28374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG : ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</gDNA_template>
            <first_frame> E  F  G  K  K  L  V  D  R  L  R  D  I  G  E  P  F  I  A  L  H  L  R :   Y  E  K  D  M  L  A  F  T  G  C  S  N  N  L  T  I  E  E  A  E  E  L  R  T  M  R  Y  E  V  K  H  W  K  E  K  E  I  D  S  K  E  K  R  L  Q  G  G  C  P  M  S  P  R  E  A  A  L  F  L  K  A  M  G  Y  L  S  T  T  R  I  Y  I  V  A  G  E  I  Y  G  N  N  S  M  D  E  F  R  S  H  Y  P  N  V  Y  S  H  S  T  L  A  T  N  E  E  L  E  A  F  K  N  Y  Q  N  R  L  A  A  V  D  Y  M  V  A  L  E  S  D  V  F  A  Y  T  Y  D  G  N  M  A  K  A  V  Q  G  H  R  R  F  E  G  F  R  K  T  I  N  P  D  </first_frame>
            <second_frame>  S  L  E  R  S  W  L  I  D  L  E  I  L  V  N  H  L  S  L  S  I  *   : D  T  R  K  T  C  *  R  L  L  A  A  A  T  I  *  L  L  K  R  L  K  N  F  V  R  *  G  M  K  *  N  I  G  R  R  K  R  *  T  A  R  K  S  D  S  R  E  A  A  P  C  P  L  G  R  L  L  Y  F  S  K  R  W  D  I  C  P  R  P  E  Y  T  L  L  Q  G  K  F  M  A  T  T  A  W  M  N  S  V  L  I  T  R  M  C  T  L  T  Q  P  L  Q  Q  M  K  N  L  R  L  S  R  I  I  K  T  V  L  L  Q  *  T  T  W  *  P  L  K  A  M  F  L  L  T  L  T  M  A  I  W  R  R  P  C  K  V  I  D  D  L  K  D  F  G  R  P  L  T  R  T </second_frame>
            <third_frame>   V  W  K  E  V  G  *  *  T  *  R  Y  W  *  T  I  Y  R  S  P  F  K  :  I  R  E  R  H  A  S  V  Y  W  L  Q  Q  Q  F  D  Y  *  R  G  *  R  T  S  Y  D  E  V  *  S  E  T  L  E  G  E  R  D  R  Q  Q  G  K  A  T  P  G  R  L  P  H  V  P  *  G  G  C  F  I  S  Q  S  D  G  I  S  V  H  D  Q  N  I  H  C  C  R  G  N  L  W  Q  Q  Q  H  G  *  I  P  F  S  L  P  E  C  V  L  S  L  N  P  C  N  K  *  R  T  *  G  F  Q  E  L  S  K  P  S  C  C  S  R  L  H  G  S  P  *  K  R  C  F  C  L  H  L  R  W  Q  Y  G  E  G  R  A  R  S  *  T  I  *  R  I  S  E  D  H  *  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29005" stop="28938"/>
                    <exon start="28849" stop="28375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFGKKLVDRLRDIGEPFIALHLRYEKDMLAFTGCSNNLTIEEAEELRTMRYEVKHWKEKEIDSKEKRLQGGCPMSPREAALFLKAMGYLSTTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTINPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="40005" PGL_stop="40305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40005" e_stop="40305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="40005" e_stop="40305" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40005" stop="40305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</gDNA_template>
            <first_frame> V  W  L  L  K  A  T  I  R  S  M  S  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  P  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  L  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  L  S  K  P  P  V  L  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  F  G  C  *  R  L  Q  S  E  V  *  A  *  L  L  R  D  I  Q  S  C  Y  S  E  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  V  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  S  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  *  A  S  P  P  C  L  V  H  T  F  E  N  V </second_frame>
            <third_frame>   L  V  A  K  G  Y  N  Q  K  Y  E  L  D  Y  S  E  T  F  S  P  V  I  R  K  E  T  I  R  L  V  L  S  L  A  V  P  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  F  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40007" stop="40303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVAKGYNQKYELDYSETFSPVIRKETIRLVLSLAVPNNWLINQLDVSNAFLHGMFDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45648" PGL_stop="45326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45648" e_stop="45326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="45648" e_stop="45326" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45648" stop="45326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGTATAATTATATGTGTATAGCAAGAAGACATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAATCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAGTTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTACATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTATGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  Y  N  Y  M  C  I  A  R  R  H  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  N  L  E  K  I  V  F  H  C  N  C  I  I  H  S  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  H  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  M  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  C  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  I  *  K  K  L  Y  F  T  A  I  V  *  F  T  V  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  L  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  V  *  L  Y  V  Y  S  K  K  T  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  S  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  T  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  Y  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49670" PGL_stop="48410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49670" e_stop="48410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49670" e_stop="48410" e_length="1261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49670" stop="49022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49670" stop="49216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49666" stop="49022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49640" stop="49144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49635" stop="49469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49492" stop="49299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49479" stop="48746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49474" stop="49207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49453" stop="48923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49317" stop="48727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49141" stop="48779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49055" stop="48674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48846" stop="48410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</gDNA_template>
            <first_frame> F  L  S  L  C  F  *  S  K  S  Y  F  F  S  S  L  S  Y  *  R  K  K  I  I  R  G  R  K  *  I  S  H  S  T  M  F  S  L  S  S  I  Q  S  N  N  I  Q  S  Q  S  S  S  S  L  L  F  N  H  H  H  Q  H  S  T  I  S  T  R  F  H  H  H  R  L  L  F  P  L  R  A  Q  N  S  D  L  T  T  A  T  T  N  N  N  Y  V  D  L  D  D  N  L  T  R  L  D  K  F  S  K  S  L  S  I  S  N  I  E  E  N  T  S  L  N  P  L  L  C  S  N  N  K  L  K  I  A  I  I  G  F  G  N  F  G  Q  F  I  A  K  S  F  I  K  Q  G  H  V  V  L  A  H  S  R  S  D  Y  S  L  I  A  Q  S  L  N  V  H  F  F  Q  D  P  N  D  L  C  E  Q  H  P  D  V  I  L  L  C  T  S  I  N  S  L  E  N  V  I  R  S  L  P  I  Q  K  L  K  R  N  T  L  F  V  D  V  L  S  V  K  E  F  P  K  N  I  F  L  Q  S  L  P  K  E  F  D  I  L  C  T  H  P  M  F  G  P  T  S  G  K  D  N  W  K  G  L  P  F  M  Y  D  K  V  R  I  G  Q  E  E  S  R  I  K  R  V  N  N  F  I  N  I  F  V  K  E  G  C  R  M  V  E  M  S  C  S  E  H  D  K  Y  A  A  G  S  Q  F  I  T  H  T  I  G  R  M  L  Q  R  L  G  T  Q  T  T  P  I  N  T  K  G  Y  E  S  L  L  N  L  M  E  N  T  T  S  D  S  F  D  L  Y  C  G  L  F  M  Y  N  N  N  S  M  E  V  L  E  K  L  D  A  A  L  D  S  L  K  R  E  L  F  G  Q  V  L  Q  K  L  E  K  R  V  E  K  G  S  R  L  A  L  P  T  P  D  F  S  K  K  I  E  K  L  K  V  E  R  K  E  L  </first_frame>
            <second_frame>  F  F  L  C  V  F  S  L  K  V  I  S  F  L  L  S  L  I  K  E  K  K  *  *  E  G  E  N  K  F  H  I  Q  P  C  F  P  F  H  L  Y  N  L  T  I  F  N  L  N  H  L  R  R  Y  S  S  I  I  I  T  S  I  Q  L  F  Q  L  G  F  I  T  T  A  Y  S  S  L  S  V  P  K  I  A  T  *  L  Q  P  P  P  I  T  T  M  S  I  L  M  T  I  *  P  D  L  I  N  F  Q  N  H  *  V  F  R  I  S  K  K  I  H  H  *  I  P  S  Y  V  P  I  T  S  S  K  *  L  S  *  A  L  E  T  L  D  N  L  L  P  N  P  L  S  N  K  A  M  L  Y  *  L  I  H  V  V  I  I  P  S  *  H  N  P  L  M  S  T  S  F  K  I  L  M  T  Y  V  N  N  I  L  T  L  F  Y  F  A  H  P  S  I  H  S  K  T  S  F  V  P  F  P  S  K  S  L  N  V  T  H  F  S  *  T  Y  Y  Q  S  K  N  S  R  K  T  F  F  F  N  H  Y  Q  K  N  L  I  F  C  V  L  I  L  C  L  V  Q  Q  V  V  K  T  I  G  K  D  Y  H  L  C  M  T  K  L  E  L  D  K  K  S  Q  E  L  K  E  S  T  I  L  S  T  F  L  *  K  K  V  V  E  W  L  K  *  V  V  V  N  M  T  S  M  L  L  D  H  N  L  L  H  I  L  L  E  E  C  Y  K  D  L  G  H  K  Q  L  L  *  T  Q  K  D  M  K  V  C  *  I  *  W  R  I  Q  L  V  I  V  L  I  C  I  V  V  C  L  C  I  T  I  I  Q  W  R  C  *  R  N  *  M  Q  H  W  I  V  *  K  G  N  Y  L  D  K  F  F  K  S  W  R  K  E  W  K  R  E  V  G  *  L  Y  L  L  L  I  L  V  R  K  L  K  N  *  K  L  R  G  R  N  * </second_frame>
            <third_frame>   S  F  F  V  F  L  V  *  K  L  F  L  F  F  S  L  L  L  K  K  K  N  N  K  R  E  K  I  N  F  T  F  N  H  V  F  P  F  I  Y  T  I  *  Q  Y  S  I  S  I  I  F  V  A  T  L  Q  S  S  S  P  A  F  N  Y  F  N  S  V  S  S  P  P  P  T  L  P  S  P  C  P  K  *  R  L  N  Y  S  H  H  Q  *  Q  L  C  R  S  *  *  Q  S  N  Q  T  *  *  I  F  K  I  I  K  Y  F  E  Y  R  R  K  Y  I  I  K  S  P  L  M  F  Q  *  Q  A  Q  N  S  Y  H  R  L  W  K  L  W  T  I  Y  C  Q  I  L  Y  Q  T  R  P  C  C  I  S  S  F  T  *  *  L  F  P  H  S  T  I  P  *  C  P  L  L  S  R  S  *  *  L  M  *  T  T  S  *  R  Y  F  T  L  H  I  H  Q  F  T  R  K  R  H  S  F  P  S  H  P  K  A  *  T  *  H  T  F  R  R  R  I  I  S  Q  R  I  P  E  K  H  F  S  S  I  T  T  K  R  I  *  Y  F  V  Y  S  S  Y  V  W  S  N  K  W  *  R  Q  L  E  R  T  T  I  Y  V  *  Q  S  *  N  W  T  R  R  V  K  N  *  K  S  Q  Q  F  Y  Q  H  F  C  K  R  R  L  *  N  G  *  N  E  L  *  *  T  *  Q  V  C  C  W  I  T  I  Y  Y  T  Y  Y  W  K  N  V  T  K  T  W  D  T  N  N  S  Y  K  H  K  R  I  *  K  F  V  E  F  D  G  E  Y  N  *  *  *  F  *  F  V  L  W  F  V  Y  V  *  Q  *  F  N  G  G  V  R  E  T  R  C  S  I  G  *  F  E  K  G  I  I  W  T  S  S  S  K  V  G  E  K  S  G  K  G  K  *  V  S  F  T  Y  S  *  F  *  *  E  N  *  K  I  E  S  *  E  E  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49583" stop="48411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISHSTMFSLSSIQSNNIQSQSSSSLLFNHHHQHSTISTRFHHHRLLFPLRAQNSDLTTATTNNNYVDLDDNLTRLDKFSKSLSISNIEENTSLNPLLCSNNKLKIAIIGFGNFGQFIAKSFIKQGHVVLAHSRSDYSLIAQSLNVHFFQDPNDLCEQHPDVILLCTSINSLENVIRSLPIQKLKRNTLFVDVLSVKEFPKNIFLQSLPKEFDILCTHPMFGPTSGKDNWKGLPFMYDKVRIGQEESRIKRVNNFINIFVKEGCRMVEMSCSEHDKYAAGSQFITHTIGRMLQRLGTQTTPINTKGYESLLNLMENTTSDSFDLYCGLFMYNNNSMEVLEKLDAALDSLKRELFGQVLQKLEKRVEKGSRLALPTPDFSKKIEKLKVERKEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="48550" PGL_stop="48927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48550" e_stop="48927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="48550" e_stop="48927" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48550" stop="48927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</gDNA_template>
            <first_frame> N  A  A  S  S  F  S  N  T  S  I  E  L  L  L  Y  I  N  K  P  Q  Y  K  S  K  L  S  L  V  V  F  S  I  K  F  N  K  L  S  Y  P  F  V  F  I  G  V  V  C  V  P  S  L  C  N  I  L  P  I  V  C  V  I  N  C  D  P  A  A  Y  L  S  C  S  L  Q  L  I  S  T  I  L  Q  P  S  F  T  K  M  L  I  K  L  L  T  L  L  I  L  D  S  S  C  P  I  L  T  L  S  Y  I  N  G  S  P  F  Q  L  S  L  P  L  V  G  P  N </first_frame>
            <second_frame>  M  L  H  L  V  S  L  T  P  P  L  N  Y  C  Y  T  *  T  N  H  N  T  N  Q  N  Y  H  *  L  Y  S  P  S  N  S  T  N  F  H  I  L  L  C  L  *  E  L  F  V  S  Q  V  F  V  T  F  F  Q  *  Y  V  *  *  I  V  I  Q  Q  H  T  C  H  V  H  Y  N  S  F  Q  P  F  Y  N  L  L  L  Q  K  C  *  *  N  C  *  L  F  *  F  L  T  L  L  V  Q  F  *  L  C  H  T  *  M  V  V  L  S  N  C  L  Y  H  L  L  D  Q   </second_frame>
            <third_frame>   C  C  I  *  F  L  *  H  L  H  *  I  I  V  I  H  K  Q  T  T  I  Q  I  K  T  I  T  S  C  I  L  H  Q  I  Q  Q  T  F  I  S  F  C  V  Y  R  S  C  L  C  P  K  S  L  *  H  S  S  N  S  M  C  N  K  L  *  S  S  S  I  L  V  M  F  T  T  T  H  F  N  H  S  T  T  F  F  Y  K  N  V  D  K  I  V  D  S  F  N  S  *  L  F  L  S  N  S  N  F  V  I  H  K  W  *  S  F  P  I  V  F  T  T  C  W  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48550" stop="48927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAASSFSNTSIELLLYINKPQYKSKLSLVVFSIKFNKLSYPFVFIGVVCVPSLCNILPIVCVINCDPAAYLSCSLQLISTILQPSFTKMLIKLLTLLILDSSCPILTLSYINGSPFQLSLPLVGPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="51672" PGL_stop="51504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51672" e_stop="51504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="51672" e_stop="51504" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51672" stop="51504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</gDNA_template>
            <first_frame> G  Y  L  N  F  N  L  I  F  E  L  N  F  Y  L  I  S  Y  D  S  I  L  H  L  C  N  P  L  S  N  Y  P  L  *  L  P  C  F  I  L  F  L  K  S  *  Y  N  V  I  I  V  F  R  K  C  K  </first_frame>
            <second_frame>  V  T  *  T  S  I  S  F  L  S  *  I  F  I  S  L  V  M  I  R  F  S  T  F  V  I  L  F  P  I  T  L  C  S  Y  P  V  L  F  Y  F  *  K  V  N  I  M  S  *  L  F  F  V  S  A  S </second_frame>
            <third_frame>   L  P  E  L  Q  S  H  F  *  V  E  F  L  S  H  *  L  *  F  D  S  P  P  L  *  S  S  F  Q  L  P  F  V  A  T  L  F  Y  F  I  F  K  K  L  I  *  C  H  N  C  F  S  *  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="56527" PGL_stop="51815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56527" e_stop="56328"/>
            <exon e_start="55433" e_stop="55212"/>
            <exon e_start="54384" e_stop="54318"/>
            <exon e_start="54008" e_stop="53677"/>
            <exon e_start="53518" e_stop="53377"/>
            <exon e_start="53170" e_stop="53088"/>
            <exon e_start="52328" e_stop="52028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56527" e_stop="56328" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55433" e_stop="55212" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54384" e_stop="54318" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54008" e_stop="53677" e_length="332"/>
          </exon>
          <intron i_serial="4" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53518" e_stop="53377" e_length="142"/>
          </exon>
          <intron i_serial="5" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53088" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.828">
            <gDNA_intron_boundary i_start="53087" i_stop="52329" i_length="759"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="52328" e_stop="52028" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56527" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56503" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56422" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56328"/>
              <exon start="55433" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56352" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53715" stop="53677"/>
              <exon start="53518" stop="53377"/>
              <exon start="53170" stop="53088"/>
              <exon start="52328" stop="52028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53715" stop="53677"/>
              <exon start="53518" stop="53377"/>
              <exon start="53170" stop="53088"/>
              <exon start="52328" stop="52052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</gDNA_template>
            <first_frame> P  T  P  T  A  N  G  V  *  E  D  N  L  L  H  I  L  Q  Y  M  T  M  Y  F  L  L  H  *  G  T  N  W  F  I  Y  H  V  D  R  G  I  M  L  K  S  T  I  *  T  V  I  *  V  L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H  R  R  K  G  Q  G  T  *  N  R  N  M  G  A  R  F  K  V  *  V  S  C  F  I  C  T  L  Q  G  I  K  A  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N </first_frame>
            <second_frame>  P  H  P  Q  Q  M  A  C  E  K  I  I  S  Y  I  S  Y  S  I  *  L  C  T  F  F  F  I  K  A  Q  I  G  L  Y  I  M  W  I  E  G  L  C  *  N  L  L  F  E  L  *  S  E  S  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  E  G  K  D  K  G  P  E  T  G  I  W  E  L  D  L  R  S  E  F  P  V  L  F  V  P  Y  K  E  S  R  L  R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E   </second_frame>
            <third_frame>   H  T  H  S  K  W  R  V  R  R  *  S  P  T  Y  L  T  V  Y  D  Y  V  L  S  S  S  L  R  H  K  L  V  Y  I  S  C  G  *  R  D  Y  V  K  I  Y  Y  L  N  C  D  L  S  L  K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S  K  E  R  T  R  D  L  K  Q  E  Y  G  S  *  I  *  G  L  S  F  L  F  Y  L  Y  L  T  R  N  Q  G  *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56364" stop="56328"/>
                    <exon start="55433" stop="55212"/>
                    <exon start="54384" stop="54318"/>
                    <exon start="54008" stop="53677"/>
                    <exon start="53518" stop="53377"/>
                    <exon start="53170" stop="53088"/>
                    <exon start="52328" stop="52180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWGAMEQPLLIGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQFYEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSIEGKDKGPETGIWELDLRSEFPVLFVPYKESRLRIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGRIQPGKLMLQAEQLLFQTTCFTEQREFSCAITKLTSARQPTLLIRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56368" e_stop="56328"/>
            <exon e_start="55433" e_stop="55212"/>
            <exon e_start="54384" e_stop="54353"/>
            <exon e_start="53484" e_stop="53377"/>
            <exon e_start="53170" e_stop="53045"/>
            <exon e_start="52328" e_stop="51815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="0.952"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56368" e_stop="56328" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="55433" e_stop="55212" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54384" e_stop="54353" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54352" i_stop="53485" i_length="868"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53484" e_stop="53377" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206"/>
          </intron>
          <exon e_serial="5" e_score="0.952">
            <gDNA_exon_boundary e_start="53170" e_stop="53045" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="52328" e_stop="51815" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56328"/>
              <exon start="55433" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55392" stop="55212"/>
              <exon start="54384" stop="54353"/>
              <exon start="53484" stop="53377"/>
              <exon start="53170" stop="53045"/>
              <exon start="52328" stop="52184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53081" stop="53045"/>
              <exon start="52328" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544814" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTAC : TTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</gDNA_template>
            <first_frame> L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L   : L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E   </first_frame>
            <second_frame>  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  :  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  </second_frame>
            <third_frame>   K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T :   C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55250" stop="55212"/>
                    <exon start="54384" stop="54353"/>
                    <exon start="53484" stop="53377"/>
                    <exon start="53170" stop="53045"/>
                    <exon start="52328" stop="51944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALLNPNPSHSFMNKGLFIRVGTTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53494" e_stop="53377"/>
            <exon e_start="53170" e_stop="53045"/>
            <exon e_start="52328" e_stop="51815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="0.983"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="53494" e_stop="53377" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53045" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="52328" e_stop="51815" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53494" stop="53377"/>
              <exon start="53170" stop="53045"/>
              <exon start="52328" stop="51998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53081" stop="53045"/>
              <exon start="52328" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544814" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</gDNA_template>
            <first_frame> F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E   </first_frame>
            <second_frame>  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  </second_frame>
            <third_frame>   C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53492" stop="53377"/>
                    <exon start="53170" stop="53045"/>
                    <exon start="52328" stop="51944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="69472" PGL_stop="68702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69472" e_stop="69425"/>
            <exon e_start="69273" e_stop="68702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69472" e_stop="69425" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.888">
            <gDNA_intron_boundary i_start="69424" i_stop="69274" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69273" e_stop="68702" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69472" stop="69425"/>
              <exon start="69273" stop="68941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69272" stop="68702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG : GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</gDNA_template>
            <first_frame> D  M  N  Q  I  K  E  M  N  V  E  V  G  R  N  E  :  V  I  R  L  L  A  R  S  F  I  S  K  T  P  L  S  D  V  F  L  P  K  Q  K  Q  R  R  A  Q  V  D  I  V  T  M  S  E  S  G  N  L  S  S  I  S  E  N  G  T  S  N  S  T  K  K  L  E  L  K  L  T  V  R  K  S  T  K  K  V  L  C  A  E  A  D  N  D  F  I  D  F  L  F  N  F  L  T  I  P  I  G  S  I  E  D  V  L  K  G  S  S  G  L  R  C  I  D  N  F  Y  K  S  V  E  A  L  D  S  K  W  F  N  M  P  P  K  Q  N  S  Y  H  S  E  D  T  S  N  D  N  F  K  T  V  L  L  K  P  N  V  A  T  H  Y  N  S  E  Y  Q  L  L  Q  I  S  E  G  K  S  E  F  Y  N  L  Y  D  P  R  Q  H  I  R  G  S  H  V  P  K  F  R  K  F   </first_frame>
            <second_frame>  I  *  I  R  L  R  R  *  M  *  K  L  A  G  T  R :   *  F  V  Y  L  L  V  H  L  F  Q  R  L  P  C  L  M  C  F  C  P  S  K  N  K  E  G  H  K  *  T  L  *  Q  C  P  S  L  E  I  C  R  P  F  L  K  M  E  R  V  I  A  P  R  S  W  S  *  S  *  Q  *  G  S  L  Q  R  R  S  C  V  Q  K  Q  T  M  I  L  L  I  F  S  S  T  S  *  R  F  L  *  D  Q  L  K  M  F  *  K  G  V  L  A  *  D  V  S  I  T  S  I  K  V  W  R  L  *  I  R  N  G  S  I  C  L  Q  S  R  I  V  T  I  V  R  I  H  L  M  T  T  L  R  Q  Y  Y  S  S  P  M  L  P  H  I  I  I  L  S  I  S  C  Y  R  F  Q  K  E  N  Q  N  F  T  I  C  M  I  Q  G  N  I  *  G  V  V  M  F  P  N  F  V  S  S  </second_frame>
            <third_frame>   Y  E  S  D  *  G  D  E  C  R  S  W  Q  E  R   : G  D  S  S  T  C  S  F  I  Y  F  K  D  S  L  V  *  C  V  S  A  Q  A  K  T  K  K  G  T  S  R  H  C  N  N  V  R  V  W  K  F  V  V  H  F  *  K  W  N  E  *  *  H  Q  E  V  G  A  E  A  N  S  K  E  V  Y  K  E  G  L  V  C  R  S  R  Q  *  F  Y  *  F  S  L  Q  L  L  D  D  S  Y  R  I  N  *  R  C  S  K  R  E  F  W  L  E  M  Y  R  *  L  L  *  K  C  G  G  F  R  F  E  M  V  Q  Y  A  S  K  A  E  *  L  P  *  *  G  Y  I  *  *  Q  L  *  D  S  I  T  Q  A  Q  C  C  H  T  L  *  F  *  V  S  A  A  T  D  F  R  R  K  I  R  I  L  Q  F  V  *  S  K  A  T  Y  K  G  *  S  C  S  Q  I  S  *  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69472" stop="69425"/>
                    <exon start="69273" stop="68704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMNQIKEMNVEVGRNEVIRLLARSFISKTPLSDVFLPKQKQRRAQVDIVTMSESGNLSSISENGTSNSTKKLELKLTVRKSTKKVLCAEADNDFIDFLFNFLTIPIGSIEDVLKGSSGLRCIDNFYKSVEALDSKWFNMPPKQNSYHSEDTSNDNFKTVLLKPNVATHYNSEYQLLQISEGKSEFYNLYDPRQHIRGSHVPKFRKF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="72256" PGL_stop="71866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72256" e_stop="71866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="72256" e_stop="71866" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72256" stop="72031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72193" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACGTTTCTTGCTGAAAATGGCTATAAAAAGAAGTCAATTTTCATTTTTTAAAACACTAAAAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATTTTATGTATTTTTTGCTTCTTCTTATTTCTGTTTCTATTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAAGAT</gDNA_template>
            <first_frame> R  H  V  S  C  *  K  W  L  *  K  E  V  N  F  H  F  L  K  H  *  K  F  S  F  F  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  Y  C  C  S  K  V  R  *  S  *  R  N  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  R  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  L  L  V  F  Y  V  F  F  A  S  S  Y  F  C  F  Y  L  L  T  L  *  I  Q  V  T  I  R  I  T  R  </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  K  K  S  I  F  I  F  *  N  T  K  N  F  P  S  L  H  L  F  F  S  Q  I  K  L  K  C  R  S  T  E  S  V  *  L  I  V  V  L  K  F  V  E  V  K  E  I  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  F  L  Y  F  M  Y  F  L  L  L  L  I  S  V  S  I  Y  *  P  Y  K  Y  R  L  L  *  E  *  Q  D </second_frame>
            <third_frame>   T  R  F  L  L  K  M  A  I  K  R  S  Q  F  S  F  F  K  T  L  K  I  F  L  L  C  I  Y  F  S  L  K  *  N  *  S  V  D  R  L  S  L  C  D  L  L  L  F  *  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  *  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  T  S  C  I  L  C  I  F  C  F  F  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  Y  K  N  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="76333" PGL_stop="77660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76333" e_stop="76382"/>
            <exon e_start="76472" e_stop="76550"/>
            <exon e_start="76793" e_stop="76926"/>
            <exon e_start="77571" e_stop="77660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76333" e_stop="76382" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76383" i_stop="76471" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76472" e_stop="76550" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76551" i_stop="76792" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="76793" e_stop="76926" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76927" i_stop="77570" i_length="644"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="77571" e_stop="77660" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76333" stop="76382"/>
              <exon start="76472" stop="76550"/>
              <exon start="76793" stop="76926"/>
              <exon start="77571" stop="77660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCT : GTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTG : GTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAG : GAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAA</gDNA_template>
            <first_frame> Y  I  V  N  V  Y  T  E  V  F  G  L  G  C  M  N  L :   L  K  T  Y  M  L  A  K  I  M  L  G  M  C  H  C  L  R  K  Y  L  L  H  L  Q  L  :  V  R  W  A  L  Q  L  Q  I  L  Q  I  *  L  K  Y  V  F  K  L  K  G  N  C  Q  Q  A  C  Q  G  V  I  L  E  L  *  M  L  T  Q  L  *  *  N  R :   K  E  F  E  L  C  G  L  V  L  D  P  I  L  G  G  M  P  S  S  M  Q  L  N  *  Q  V  M  I   </first_frame>
            <second_frame>  T  S  S  M  Y  I  R  R  S  S  D  W  D  V  *  T   : C  *  K  L  I  C  W  Q  R  S  C  W  G  C  A  I  V  *  E  N  T  C  C  T  Y  N  W :   C  V  G  H  Y  S  C  K  S  Y  R  S  S  *  S  T  S  S  S  *  R  E  I  A  S  R  R  A  K  A  L  F  W  S  S  K  C  L  L  N  Y  S  E  T   : G  R  S  S  S  S  V  D  W  S  W  T  Q  Y  W  A  E  C  H  H  Q  C  S  *  I  S  K  L  *  S  </second_frame>
            <third_frame>   H  R  Q  C  I  Y  G  G  L  R  I  G  M  Y  E  P  :  V  K  N  L  Y  V  G  K  D  H  V  G  D  V  P  L  S  K  K  I  L  A  A  L  T  T   : G  A  L  G  I  T  V  A  N  P  T  D  L  V  K  V  R  L  Q  A  E  G  K  L  P  A  G  V  P  R  R  Y  S  G  A  L  N  A  Y  S  T  I  V  K  Q  :  E  G  V  R  A  L  W  T  G  L  G  P  N  I  G  R  N  A  I  I  N  A  A  E  L  A  S  Y  D  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76335" stop="76382"/>
                    <exon start="76472" stop="76550"/>
                    <exon start="76793" stop="76926"/>
                    <exon start="77571" stop="77660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRQCIYGGLRIGMYEPVKNLYVGKDHVGDVPLSKKILAALTTGALGITVANPTDLVKVRLQAEGKLPAGVPRRYSGALNAYSTIVKQEGVRALWTGLGPNIGRNAIINAAELASYDQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="87397" PGL_stop="86753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87397" e_stop="87359"/>
            <exon e_start="87207" e_stop="86753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87397" e_stop="87359" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87358" i_stop="87208" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87207" e_stop="86753" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87359"/>
              <exon start="87207" stop="86753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87359"/>
              <exon start="87207" stop="86753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG : GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</gDNA_template>
            <first_frame> D  K  G  T  P  N  D  Y  N  T  Y  R  K  :  V  M  R  S  I  T  D  N  I  T  E  E  V  L  L  N  E  I  Y  E  I  I  R  L  P  M  Y  A  D  R  I  Q  S  D  S  K  A  H  V  R  R  R  *  M  N  *  C  L  A  V  F  I  *  Y  H  *  K  G  M  Y  K  Q  P  *  F  L  G  V  F  C  V  L  Y  W  V  C  Y  M  D  P  V  G  T  L  *  T  *  W  S  M  T  R  A  L  C  F  F  F  V  S  D  E  V  V  L  Y  I  I  V  V  L  V  H  F  F  F  T  W  L  L  L  C  C  L  R  *  V  L  N  F  Q  A  L  C  D  L  F  P  C  E  Y  K  I  V  L  L  V  I  S  S  L   </first_frame>
            <second_frame>  T  K  E  L  R  M  T  T  I  R  T  E  R :   *  *  E  V  L  P  T  T  S  L  K  K  C  C  *  M  R  F  M  R  S  F  D  C  Q  C  M  R  I  G  Y  R  V  I  A  K  L  M  Y  D  A  D  E  *  I  D  A  *  L  C  S  S  N  I  I  R  R  A  C  T  S  S  L  S  S  *  A  C  F  V  C  Y  T  G  F  V  I  W  I  Q  L  A  H  C  K  L  S  G  P  *  L  G  P  C  V  F  S  S  L  A  M  R  L  S  C  I  L  *  L  F  *  F  T  F  F  L  P  G  Y  C  Y  V  V  *  G  R  F  *  T  F  K  L  Y  A  I  Y  S  L  V  N  T  K  L  F  Y  *  L  F  L  V  Y  </second_frame>
            <third_frame>   Q  R  N  S  E  *  L  Q  Y  V  Q  K   : G  D  E  K  Y  Y  R  Q  H  H  *  R  S  V  V  E  *  D  L  *  D  H  S  T  A  N  V  C  G  *  D  T  E  *  *  Q  S  S  C  T  T  Q  M  N  E  L  M  L  S  C  V  H  L  I  S  L  E  G  H  V  Q  A  A  L  V  P  R  R  V  L  C  A  I  L  G  L  L  Y  G  S  S  W  H  T  V  N  L  V  V  H  D  S  G  L  V  F  F  L  R  *  R  *  G  C  L  V  Y  Y  S  C  F  S  S  L  F  F  Y  L  V  T  V  M  L  S  K  V  G  F  K  L  S  S  S  M  R  S  I  P  L  *  I  Q  N  C  S  T  S  Y  F  *  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87103" stop="86909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSCTTQMNELMLSCVHLISLEGHVQAALVPRRVLCAILGLLYGSSWHTVNLVVHDSGLVFFLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="95706" PGL_stop="87418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95706" e_stop="95599"/>
            <exon e_start="95511" e_stop="95305"/>
            <exon e_start="92749" e_stop="92630"/>
            <exon e_start="92407" e_stop="92361"/>
            <exon e_start="90577" e_stop="90415"/>
            <exon e_start="90292" e_stop="90155"/>
            <exon e_start="90023" e_stop="89901"/>
            <exon e_start="89796" e_stop="89698"/>
            <exon e_start="89332" e_stop="89243"/>
            <exon e_start="88934" e_stop="88853"/>
            <exon e_start="87489" e_stop="87418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.379" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="0.957"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="0.963"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.261" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95706" e_stop="95599" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.379">
            <gDNA_intron_boundary i_start="95598" i_stop="95512" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95511" e_stop="95305" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95304" i_stop="92750" i_length="2555"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="92749" e_stop="92630" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92629" i_stop="92408" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="92407" e_stop="92361" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="92360" i_stop="90578" i_length="1783"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="90577" e_stop="90415" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90292" e_stop="90155" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90023" e_stop="89901" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89796" e_stop="89698" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="89697" i_stop="89333" i_length="365"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89332" e_stop="89243" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.741" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89242" i_stop="88935" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="88934" e_stop="88853" e_length="82"/>
          </exon>
          <intron i_serial="10" don_prob="0.261" acc_prob="0.968">
            <gDNA_intron_boundary i_start="88852" i_stop="87490" i_length="1363"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87489" e_stop="87418" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95706" stop="95599"/>
              <exon start="95511" stop="95325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95468" stop="95305"/>
              <exon start="92749" stop="92630"/>
              <exon start="92407" stop="92361"/>
              <exon start="90577" stop="90415"/>
              <exon start="90292" stop="90155"/>
              <exon start="90023" stop="89991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92398" stop="92361"/>
              <exon start="90577" stop="90415"/>
              <exon start="90292" stop="90155"/>
              <exon start="90023" stop="89901"/>
              <exon start="89796" stop="89785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90502" stop="90415"/>
              <exon start="90292" stop="90155"/>
              <exon start="90023" stop="89901"/>
              <exon start="89796" stop="89698"/>
              <exon start="89332" stop="89243"/>
              <exon start="88934" stop="88853"/>
              <exon start="87489" stop="87418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90164" stop="90155"/>
              <exon start="90023" stop="89901"/>
              <exon start="89796" stop="89698"/>
              <exon start="89332" stop="89243"/>
              <exon start="88934" stop="88853"/>
              <exon start="87489" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90164" stop="90155"/>
              <exon start="90023" stop="89901"/>
              <exon start="89796" stop="89698"/>
              <exon start="89332" stop="89311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG : GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT : GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG : GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG : GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG : ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</gDNA_template>
            <first_frame> K  H  A  K  K  Y  I  L  V  H  C  T  H  G  H  N  R  T  G  F  M  I  I  H  Y  L  M  R  T  L  P  I  S  V  S  Q  :  A  I  K  I  F  S  D  A  R  P  P  G  I  Y  K  P  D  Y  I  D  A  L  Y  A  F  Y  H  E  K  K  P  E  M  V  V  C  P  P  T  P  E  W  K  K  S  S  E  L  D  L  N  G  D  A  M  P  D  D  D  D  D  G  G  P  A  A  P  L  T  :  D  N  L  E  A  Q  V  V  T  S  N  D  D  I  L  G  D  A  I  P  Q  D  Q  Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D  G  L  I  F  Q  :  G  W  D  D  P  Y  V  P  R  T  H  E  G  L  L  K  W  K  Y  P  E  M  N  S  V  D  F  L  F  E  :  V  V  D  D  R  E  L  L  Y  L  H  E  R  G  K  K  K  L  M  E  G  S  R  V  V  F  P   : D  G  S  D  P  S  A  Y  S  G  K  I  I  E  C  S  F  D  T  D  D  Q  K  W  </first_frame>
            <second_frame>  N  M  Q  R  S  I  F  L  F  I  A  H  M  G  I  I  A  L  G  L  *  S  F  I  I  L  C  A  R  C  Q  Y  L  S  V  R :   Q  L  K  F  F  L  T  L  V  L  L  G  S  I  S  Q  T  I  S  M  P  Y  M  P  S  I  M  R  K  N  L  K  W  L  F  V  H  Q  H  L  S  G  K  N  L  L  S  L  I  *  M  V  M  Q  C  Q  M  T  M  M  M  E  V  L  Q  L  L  *  L :   T  I  L  K  H  K  *  *  P  Q  M  M  T  F  W  E  M  Q  S  H  K  I  S  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L  M  V  L  F  F  R :   V  G  M  I  L  M  F  L  V  R  M  R  V  S  *  S  G  N  T  L  K  *  T  R  S  T  F  S  L  R :   W  L  T  I  V  N  C  F  I  Y  M  N  E  G  R  R  N  *  W  R  G  V  E  L  F  S  Q  :  M  V  L  I  H  Q  L  T  P  V  K  *  *  S  A  L  L  T  L  M  T  K  N  G </second_frame>
            <third_frame>   T  C  K  E  V  Y  S  C  S  L  H  T  W  A  *  S  H  W  V  Y  D  H  S  L  S  Y  A  H  A  A  N  I  C  Q  S   : G  N  *  N  F  F  *  R  S  S  S  W  D  L  *  A  R  L  Y  R  C  P  I  C  L  L  S  *  E  K  T  *  N  G  C  L  S  T  N  T  *  V  E  K  I  F  *  A  *  F  E  W  *  C  N  A  R  *  R  *  *  W  R  S  C  S  S  F  D   : *  Q  S  *  S  T  S  S  N  L  K  *  *  H  F  G  R  C  N  P  T  R  S  A  K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  W  S  Y  F  S   : G  L  G  *  S  L  C  S  S  Y  A  *  G  S  L  E  V  E  I  P  *  N  E  L  G  R  L  S  L  *   : G  G  *  R  S  *  I  A  L  S  T  *  T  R  E  E  E  T  N  G  G  E  *  S  C  F  P  R :   W  F  *  S  I  S  L  L  R  *  N  N  R  V  L  F  *  H  *  *  P  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95706" stop="95599"/>
                    <exon start="95511" stop="95305"/>
                    <exon start="92749" stop="92630"/>
                    <exon start="92407" stop="92361"/>
                    <exon start="90577" stop="90415"/>
                    <exon start="90292" stop="90155"/>
                    <exon start="90023" stop="89901"/>
                    <exon start="89796" stop="89698"/>
                    <exon start="89332" stop="89243"/>
                    <exon start="88934" stop="88853"/>
                    <exon start="87489" stop="87419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHAKKYILVHCTHGHNRTGFMIIHYLMRTLPISVSQAIKIFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKKSSELDLNGDAMPDDDDDGGPAAPLTDNLEAQVVTSNDDILGDAIPQDQQNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVVDDRELLYLHERGKKKLMEGSRVVFPDGSDPSAYSGKIIECSFDTDDQKW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="97251" PGL_stop="96380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97251" e_stop="97227"/>
            <exon e_start="97119" e_stop="96380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97251" e_stop="97227" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97226" i_stop="97120" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="97119" e_stop="96380" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97251" stop="97227"/>
              <exon start="97119" stop="96380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACAAGGCATCAAGCACGTAAAG : ATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTAGGGCTCTACACTCTT</gDNA_template>
            <first_frame> E  T  R  H  Q  A  R  K   : D  S  M  Q  R  P  R  F  C  T  *  Q  *  V  C  K  F  I  C  L  *  G  N  F  I  Y  V  G  C  M  F  S  *  M  L  Y  L  R  I  S  L  H  Y  L  P  C  K  V  L  Q  V  C  L  R  T  F  I  H  T  W  L  D  L  R  C  Y  Y  Y  H  I  C  Y  T  W  C  N  Y  *  C  V  L  F  A  N  Q  V  E  N  *  V  D  D  *  F  V  C  N  L  L  G  I  K  R  R  S  Y  F  E  N  D  R  A  F  V  K  N  K  N  K  N  K  N  D  R  V  D  I  L  *  F  Y  V  I  *  *  M  C  S  I  L  I  E  R  K  N  I  I  H  S  F  K  W  S  L  G  V  T  V  K  A  V  I  V  L  L  D  R  H  M  F  K  L  *  K  *  F  F  V  G  M  Q  Y  N  V  V  Y  S  R  S  N  M  V  S  L  L  G  F  C  Y  L  F  R  *  Y  F  L  L  Y  C  D  Y  A  S  T  *  C  L  C  D  L  *  N  T  S  S  K  R  Y  G  P  L  S  G  P  G  Q  W  K  L  N  A  L  G  L  Y  T  L </first_frame>
            <second_frame>  K  Q  G  I  K  H  V  K  :  I  Q  C  R  G  R  G  S  A  P  D  N  E  S  V  N  L  F  V  S  E  V  I  L  Y  M  L  V  A  C  L  V  E  C  C  T  *  E  *  A  C  I  T  Y  H  V  K  Y  Y  K  F  V  C  V  P  L  S  I  H  G  *  I  F  A  V  T  I  I  I  Y  V  T  L  G  A  I  I  N  V  C  C  L  P  I  K  W  K  T  K  L  M  T  N  L  F  V  I  F  *  E  *  K  G  E  A  I  L  R  M  I  G  P  L  S  K  I  K  I  K  I  K  M  I  G  *  I  F  C  N  F  M  L  Y  N  E  C  A  L  F  L  S  K  E  R  I  *  S  I  P  S  S  G  A  L  V  *  R  *  K  L  S  L  C  Y  *  I  V  T  C  S  S  C  E  N  S  F  L  W  E  C  N  I  M  L  C  T  V  D  R  I  W  S  P  C  W  V  F  V  I  F  L  G  D  I  S  S  Y  I  V  T  M  H  L  L  D  A  F  V  I  Y  R  T  L  H  Q  K  D  M  V  P  S  L  D  L  D  S  G  N  L  M  H  *  G  S  T  L   </second_frame>
            <third_frame>   N  K  A  S  S  T  *  R :   F  N  A  E  A  A  V  L  H  L  T  M  S  L  *  I  Y  L  S  L  R  *  F  Y  I  C  W  L  H  V  *  L  N  A  V  P  E  N  K  L  A  L  L  T  M  *  S  T  T  S  L  F  A  Y  L  Y  P  Y  M  V  R  S  S  L  L  L  L  S  Y  M  L  H  L  V  Q  L  L  M  C  V  V  C  Q  S  S  G  K  L  S  *  *  L  I  C  L  *  S  S  R  N  K  K  E  K  L  F  *  E  *  *  G  L  C  Q  K  *  K  *  K  *  K  *  *  G  R  Y  F  V  I  L  C  Y  I  M  N  V  L  Y  S  Y  R  K  K  E  Y  N  P  F  L  Q  V  E  P  W  C  N  G  K  S  C  H  C  V  I  R  S  S  H  V  Q  A  V  K  I  V  F  C  G  N  A  I  *  C  C  V  Q  *  I  E  Y  G  L  L  V  G  F  L  L  S  F  *  V  I  F  P  P  I  L  *  L  C  I  Y  L  M  P  L  *  F  I  E  H  F  I  K  K  I  W  S  P  L  W  T  W  T  V  E  T  *  C  T  R  A  L  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96624" stop="96394"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVTCSSCENSFLWECNIMLCTVDRIWSPCWVFVIFLGDISSYIVTMHLLDAFVIYRTLHQKDMVPSLDLDSGNLMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="96762" PGL_stop="97279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96762" e_stop="97279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="96762" e_stop="97279" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96762" stop="97279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96762" stop="97195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96762" stop="97141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96763" stop="97184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTTTATTTTTGACAAAGGCCCTATCATTCTCAAAATAGCTTCTCCTTTTTATTCCTAGAAGATTACAAACAAATTAGTCATCAACTTAGTTTTCCACTTGATTGGCAAACAACACACATTAATAATTGCACCAAGTGTAACATATATGATAATAGTAACAGCGAAGATCTAACCATGTATGGATAAAGGTACGCAAACAAACTTGTAGTACTTTACATGGTAAGTAATGCAAGCTTATTCTCAGGTACAGCATTCAACTAAACATGCAACCAACATATATAAAATTACCTCAGAGACAAATAAATTTACAGACTCATTGTCAGGTGCAGAACCGCGGCCTCTGCATTGAATCTGATACACGTGAAAGAATAAAAATCAGGACAACAACAATAAATCAGAGAGAAAAAATATGCCCTCATCACCTTTTCTCCTCCATGACTTTATTACCATGTACCAACCTTTACGTGCTTGATGCCTTGTTTCCTCCAATCTGACAATGAATAGTATCGAC</gDNA_template>
            <first_frame> F  L  F  L  F  L  T  K  A  L  S  F  S  K  *  L  L  L  F  I  P  R  R  L  Q  T  N  *  S  S  T  *  F  S  T  *  L  A  N  N  T  H  *  *  L  H  Q  V  *  H  I  *  *  *  *  Q  R  R  S  N  H  V  W  I  K  V  R  K  Q  T  C  S  T  L  H  G  K  *  C  K  L  I  L  R  Y  S  I  Q  L  N  M  Q  P  T  Y  I  K  L  P  Q  R  Q  I  N  L  Q  T  H  C  Q  V  Q  N  R  G  L  C  I  E  S  D  T  R  E  R  I  K  I  R  T  T  T  I  N  Q  R  E  K  I  C  P  H  H  L  F  S  S  M  T  L  L  P  C  T  N  L  Y  V  L  D  A  L  F  P  P  I  *  Q  *  I  V  S   </first_frame>
            <second_frame>  F  Y  F  Y  F  *  Q  R  P  Y  H  S  Q  N  S  F  S  F  L  F  L  E  D  Y  K  Q  I  S  H  Q  L  S  F  P  L  D  W  Q  T  T  H  I  N  N  C  T  K  C  N  I  Y  D  N  S  N  S  E  D  L  T  M  Y  G  *  R  Y  A  N  K  L  V  V  L  Y  M  V  S  N  A  S  L  F  S  G  T  A  F  N  *  T  C  N  Q  H  I  *  N  Y  L  R  D  K  *  I  Y  R  L  I  V  R  C  R  T  A  A  S  A  L  N  L  I  H  V  K  E  *  K  S  G  Q  Q  Q  *  I  R  E  K  K  Y  A  L  I  T  F  S  P  P  *  L  Y  Y  H  V  P  T  F  T  C  L  M  P  C  F  L  Q  S  D  N  E  *  Y  R  </second_frame>
            <third_frame>   F  I  F  I  F  D  K  G  P  I  I  L  K  I  A  S  P  F  Y  S  *  K  I  T  N  K  L  V  I  N  L  V  F  H  L  I  G  K  Q  H  T  L  I  I  A  P  S  V  T  Y  M  I  I  V  T  A  K  I  *  P  C  M  D  K  G  T  Q  T  N  L  *  Y  F  T  W  *  V  M  Q  A  Y  S  Q  V  Q  H  S  T  K  H  A  T  N  I  Y  K  I  T  S  E  T  N  K  F  T  D  S  L  S  G  A  E  P  R  P  L  H  *  I  *  Y  T  *  K  N  K  N  Q  D  N  N  N  K  S  E  R  K  N  M  P  S  S  P  F  L  L  H  D  F  I  T  M  Y  Q  P  L  R  A  *  C  L  V  S  S  N  L  T  M  N  S  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96996" stop="97262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKLILRYSIQLNMQPTYIKLPQRQINLQTHCQVQNRGLCIESDTRERIKIRTTTINQREKICPHHLFSSMTLLPCTNLYVLDALFPPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="104294" PGL_stop="99082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104294" e_stop="104007"/>
            <exon e_start="99522" e_stop="99082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104294" e_stop="104007" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="104006" i_stop="99523" i_length="4484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99522" e_stop="99082" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104294" stop="104007"/>
              <exon start="99522" stop="99085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545671" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104294" stop="104007"/>
              <exon start="99522" stop="99086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104293" stop="104007"/>
              <exon start="99522" stop="99202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104098" stop="104007"/>
              <exon start="99522" stop="99082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG : GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</gDNA_template>
            <first_frame> L  S  F  F  L  *  E  S  F  Q  L  F  A  I  G  K  S  F  L  V  V  M  D  *  T  I  N  Q  S  L  *  S  L  F  L  S  L  T  A  W  P  L  P  S  L  S  R  I  L  W  F  D  F  I  K  F  L  V  R  *  L  *  G  F  F  P  V  L  C  T  V  K  R  E  V  F  F  W  F  S  S  *  V  P  P  S  R  W  L  L  Q  F  L  L  R  *  :  E  Q  N  Y  K  L  L  A  G  T  L  T  Y  A  F  C  *  D  L  N  H  Q  H  G  F  E  C  L  A  T  A  R  G  *  R  R  D  F  W  T  T  I  R  R  *  T  T  R  T  Y  F  T  *  *  *  A  C  R  L  C  H  E  C  C  R  D  F  T  S  R  M  F  L  L  I  L  L  A  V  S  T  I  E  L  Y  Y  Y  L  N  L  L  V  Y  W  I  F  L  F  G  S  L  F  D  T  C  L  F  Y  L  G  C  F  F  A  A  C  H  R  Q  S  N  N  *  *  K  A  L  *  N  K  I  L  L  N  Q  N  P  E  D  V  I  D  L  F  *  K  K </first_frame>
            <second_frame>  S  L  S  F  C  E  R  A  F  N  C  S  Q  S  V  N  P  F  S  S  S  W  I  E  P  *  I  N  L  S  D  L  S  F  S  L  *  Q  H  G  H  F  L  L  S  L  G  F  C  G  L  I  S  *  N  F  *  L  G  N  C  R  G  F  F  Q  F  F  V  R  *  S  V  K  F  S  S  G  F  R  A  E  F  L  Q  V  V  G  F  C  N  F  F  Y  V  R :   S  R  T  I  N  C  L  Q  E  P  *  H  M  L  S  V  E  T  *  I  T  S  M  D  L  N  A  L  P  Q  P  E  D  D  D  E  I  F  G  Q  Q  L  E  D  E  P  Q  E  P  I  L  R  S  D  E  R  A  D  Y  V  T  S  A  V  E  I  S  R  R  V  C  F  C  L  Y  C  S  L  Y  Q  L  L  N  C  T  T  T  *  T  C  S  F  I  G  Y  F  F  L  A  P  C  L  I  H  V  S  F  I  L  V  V  S  L  L  L  V  I  G  R  A  I  T  N  R  K  L  C  K  I  K  F  C  *  I  K  I  Q  R  M  *  L  I  Y  F  K  K   </second_frame>
            <third_frame>   L  F  L  F  V  R  E  L  S  I  V  R  N  R  *  I  L  S  R  R  H  G  L  N  H  K  S  I  S  L  I  S  L  S  L  S  N  S  M  A  T  S  F  S  L  *  D  F  V  V  *  F  H  K  I  S  S  *  V  I  V  G  V  F  S  S  S  L  Y  G  E  A  *  S  F  L  L  V  F  E  L  S  S  S  K  S  L  A  S  A  I  S  F  T  L   : G  A  E  L  *  I  A  C  R  N  L  D  I  C  F  L  L  R  L  E  S  P  A  W  I  *  M  P  C  H  S  Q  R  M  T  T  R  F  L  D  N  N  *  K  M  N  H  K  N  L  F  Y  V  V  M  S  V  Q  I  M  S  R  V  L  *  R  F  H  V  A  Y  V  S  A  Y  T  A  R  C  I  N  Y  *  T  V  L  L  L  E  L  A  R  L  L  D  I  S  F  W  L  L  V  *  Y  M  S  L  L  S  W  L  F  L  C  C  L  S  S  A  E  Q  *  L  I  E  S  F  V  K  *  N  F  V  K  S  K  S  R  G  C  D  *  F  I  L  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99464" stop="99258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSMDLNALPQPEDDDEIFGQQLEDEPQEPILRSDERADYVTSAVEISRRVCFCLYCSLYQLLNCTTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99357" stop="99154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACRLCHECCRDFTSRMFLLILLAVSTIELYYYLNLLVYWIFLFGSLFDTCLFYLGCFFAACHRQSNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="112668" PGL_stop="105076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112668" e_stop="112599"/>
            <exon e_start="105484" e_stop="105076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.871"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.871">
            <gDNA_exon_boundary e_start="112668" e_stop="112599" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112598" i_stop="105485" i_length="7114"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="105484" e_stop="105076" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112668" stop="112599"/>
              <exon start="105484" stop="105317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112667" stop="112599"/>
              <exon start="105484" stop="105076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGA : GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M   : R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  E  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  T  S  V  L  M  C  E  L  H  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  F  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  *  *  L  *  P  V  F  I  I  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  :  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  Q  S  S  C  V  N  F  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  S  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  L  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  L  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E :   G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  R  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  D  F  S  P  H  V  *  T  S  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  I  R  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  *  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  I  V  T  L  A  S  L  Y  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111569" e_stop="111016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="111569" e_stop="111016" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111569" stop="111016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  S  V  L  C  T  S  T  T  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  P  N  *  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  R  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  N  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  E  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  Q  C  S  L  H  Q  H  H  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  A  *  L  M  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111568" stop="111017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVRNEEMPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTNGPIMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHIECQPIEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111928" e_stop="111643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="111928" e_stop="111643" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111928" stop="111643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  *  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  R  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  K  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  G  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="107446" PGL_stop="107622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107446" e_stop="107622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="107446" e_stop="107622" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107446" stop="107622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGTCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGATAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTTCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  V  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  D  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  F  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  S  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  I  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  S  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="108927" PGL_stop="111636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108927" e_stop="111636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="108927" e_stop="111636" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108998" stop="109676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108998" stop="109355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109446" stop="110104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109515" stop="110276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109515" stop="110175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109918" stop="110248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110125" stop="110683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110129" stop="110892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110209" stop="110998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110211" stop="110744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110285" stop="110982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110846" stop="111565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110849" stop="111512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111204" stop="111636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  Y  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  R  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  I  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  Y  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  S  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  Y  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  L  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  C  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  R  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  S  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  I  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  D  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  *  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  I  Q  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  I  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  S  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  H  *  L  G  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  V  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  P  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  Q  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  N  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  Y  K  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  L  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  R  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  K  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  L  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  I  S  *  A  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  W  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  S  H  L  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  R  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111287" stop="111634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWKRAYFQWNIHAGSHSSRMLYLRSLWCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWHFLISHLFSFPILPFSYYLLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTAPRRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110357" stop="110611"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAVLVTTITSTTTPSRKTASTMTTSTSSYWGSVTRSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLKWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109653" stop="109898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNRSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLIIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109214" stop="109429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSRRVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110667" stop="110861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSYLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108927" e_stop="110025"/>
            <exon e_start="110770" e_stop="111636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="108927" e_stop="110025" e_length="1099"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110026" i_stop="110769" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="110770" e_stop="111636" e_length="867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108927" stop="109451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108998" stop="109676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108998" stop="109355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109498" stop="110025"/>
              <exon start="110770" stop="110942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110846" stop="111565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110849" stop="111512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111204" stop="111636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTT : CTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  Y  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  R  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  I  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I   : S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  Y  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  L  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  C  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  R  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  S  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  I  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  D  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  *  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  I  Q  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  :  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  H  *  L  G  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  V  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  P  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  Q  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  N  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  Y  K  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F :   L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  L  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  I  S  *  A  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  W  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  S  H  L  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  R  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111287" stop="111634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWKRAYFQWNIHAGSHSSRMLYLRSLWCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWHFLISHLFSFPILPFSYYLLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTAPRRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109653" stop="109898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNRSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLIIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109899" stop="110025"/>
                    <exon start="110770" stop="110861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSSISWKDFAVAAICKAEIRNSYLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109214" stop="109429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSRRVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="121194" PGL_stop="120126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121194" e_stop="120901"/>
            <exon e_start="120669" e_stop="120614"/>
            <exon e_start="120535" e_stop="120126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.881"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="0.982"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.881">
            <gDNA_exon_boundary e_start="121194" e_stop="120901" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120900" i_stop="120670" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="120669" e_stop="120614" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="120613" i_stop="120536" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="120535" e_stop="120126" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121194" stop="120901"/>
              <exon start="120669" stop="120614"/>
              <exon start="120535" stop="120390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253404" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121028" stop="120901"/>
              <exon start="120669" stop="120614"/>
              <exon start="120535" stop="120126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120989" stop="120901"/>
              <exon start="120669" stop="120614"/>
              <exon start="120535" stop="120126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243672" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATAAAATCTAAATTAAAAATTTATCACACAAATCCTAACAAGTGAATCAAACATGAAAATAAGTTGTATTACACATATGCAAACAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTGAATTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTT : GTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG : ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</gDNA_template>
            <first_frame> L  N  K  I  *  I  K  N  L  S  H  K  S  *  Q  V  N  Q  T  *  K  *  V  V  L  H  I  C  K  Q  V  N  *  T  *  I  K  V  V  L  H  R  C  *  Q  V  N  *  N  *  I  E  V  E  L  H  I  C  *  Q  V  N  *  T  *  I  K  V  V  L  H  R  C  *  Q  V  N  *  I  R  I  K  V  V  L  H  G  C  *  Q  V  N  Q  N  *  I  E  V  :  V  L  H  K  C  *  K  V  N  *  T  *  I  K  V  V  L  H  R :   C  *  Q  E  I  I  L  I  R  E  E  N  *  I  P  D  T  H  R  N  L  N  Q  T  K  S  Q  H  K  S  S  N  K  K  A  H  K  *  R  K  H  K  S  N  E  I  S  T  *  I  H  T  K  R  R  K  A  *  R  S  G  H  C  Q  D  H  N  C  K  L  T  L  K  D  Q  L  S  A  K  *  T  N  K  N  R  R  M  Q  C  K  *  P  K  L  T  D  L  T  Q  H  *  P  L  N  C  N  G  E  R  K  L  K  S  P  E  K  N  C  S  C  E  R  E  K  K  L  Q  S  R  E  R  R  K  N  C  S  </first_frame>
            <second_frame>  L  I  K  S  K  L  K  I  Y  H  T  N  P  N  K  *  I  K  H  E  N  K  L  Y  Y  T  Y  A  N  K  *  I  K  P  E  L  K  L  Y  Y  T  D  A  N  K  *  I  K  T  E  L  K  L  N  Y  T  Y  A  N  K  *  I  K  L  E  L  K  L  Y  Y  T  D  V  N  K  *  I  K  S  E  L  K  L  Y  Y  T  D  A  N  K  *  T  K  T  E  L  K  L :   Y  Y  T  N  A  K  K  *  I  K  P  E  L  K  L  Y  Y  T   : D  A  N  K  R  S  Y  L  L  E  K  R  T  E  Y  Q  T  L  T  G  T  *  I  K  Q  N  L  N  I  N  H  Q  T  K  R  H  T  S  S  V  N  I  N  Q  T  K  S  Q  H  K  F  T  Q  K  E  E  R  R  N  D  L  G  T  V  K  T  T  I  A  S  S  H  *  R  I  S  *  V  Q  S  R  P  T  K  I  A  E  C  S  A  S  N  L  N  *  Q  I  L  L  N  T  N  L  *  I  A  M  A  R  E  N  *  S  R  R  K  K  I  A  V  A  R  E  R  K  N  C  S  R  E  R  E  E  K  I  A  V </second_frame>
            <third_frame>   *  *  N  L  N  *  K  F  I  T  Q  I  L  T  S  E  S  N  M  K  I  S  C  I  T  H  M  Q  T  S  E  L  N  L  N  *  S  C  I  T  Q  M  L  T  S  E  L  K  L  N  *  S  *  I  T  H  M  L  T  S  E  L  N  L  N  *  S  C  I  T  Q  M  L  T  S  E  L  N  Q  N  *  S  C  I  T  R  M  L  T  S  E  P  K  L  N  *  S   : C  I  T  Q  M  L  K  S  E  L  N  L  N  *  S  C  I  T  Q  :  M  L  T  R  D  H  T  Y  *  R  R  E  L  N  T  R  H  S  Q  E  L  E  S  N  K  I  S  T  *  I  I  K  Q  K  G  T  Q  V  A  *  T  *  I  K  R  N  L  N  I  N  S  H  K  K  K  K  G  V  T  I  W  A  L  S  R  P  Q  L  Q  A  H  I  K  G  S  V  K  C  K  V  D  Q  Q  K  S  Q  N  A  V  Q  V  T  *  I  N  R  S  Y  S  T  L  T  F  K  L  Q  W  R  E  K  I  E  V  A  G  K  K  L  Q  L  R  E  R  E  K  I  A  V  A  R  E  K  K  K  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0300E15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 222 chains have been computed
$ 
$ memory statistics:
$ 210080 bytes spliced alignments in total
$ 98 spliced alignments have been stored
$ 2143 bytes was the average size of a spliced alignment
$ 35664 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1426 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 270 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 05:12:18
-->
