<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 05:31:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0001L13-m49Eq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0001L13-m49Eq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-m49Eq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320900" ref_strand="+" ref_description="SGN-U320900        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:2729816-2731087 REVERSE | Aliases: None(evalue: 2e-26, score=117) genbank/nr: gi|34898230|ref|NP_910461.1| putative RanBP7/importin-beta/Cse1p homolog [Oryza sativa (japonica cultivar-group)] gi|29837185|dbj|BAC75567.1| putative Ran binding protein 11-like [Oryza sativa (japonica cultivar-group)](evalue: 2e-41, score=173)">
      <seq>gggagatgatcatgatccttccaaggcagctgtacaagcatcatcatcagcactgctggcaaggattttggtgatgaacacgaattatcttgcacagctaacttctgatccatcactgtctatacaccttcagaaatctggttttcctagtgaagaaaacatactcctttgcctcgtcgacatgtggcttgaaaaggttgacaatgttacctctttccagaagaagacaattggtttggccctctctataattctgactttgaggttgcctcaagtacttgataaacttgatcagattatgagtgtatgtacaagtgttataatgggtggaagtgaggatttaagtgaagaagagtctagtagtgacaatgtaagctctagcaaacctcatgtgccaagcaaggagttgaggaggagacagatgaaactctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttaaaaaaaaaaaaaaaaaacatattcatgagggggggggccggcttcttcttcccctatatagtgtggaataaaaaaaacctngtttttatatttagaaataatatctcataccaaggtctgatatctcatattataggtaaaatatcttatgcttccttagttttcttttctgagaggccgtttagttccatgctattttctacattcttcccacaattttcactactttttgtagtaatatttgttactttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-m49Eq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="5730" stop="23126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6030" g_stop="6225" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6226" i_stop="6907" i_length="682">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6908" g_stop="7014" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="303" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7128" g_stop="7184" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7279" g_stop="7339" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="421" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7424" g_stop="7667" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="665" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8508" g_stop="8867" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="1025" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8868" i_stop="9541" i_length="674">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.123" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9542" g_stop="9590" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1074" r_length="49" r_score="0.531"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9591" i_stop="10626" i_length="1036">
            <donor d_prob="0.953" d_score="0.53"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10627" g_stop="10659" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1104" r_length="30" r_score="0.606"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10660" i_stop="11123" i_length="464">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11124" g_stop="11194" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1170" r_length="66" r_score="0.634"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="11195" i_stop="11926" i_length="732">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="11927" g_stop="11956" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1171" r_stop="1200" r_length="30" r_score="0.733"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="11957" i_stop="15609" i_length="3653">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15610" g_stop="15689" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1201" r_stop="1280" r_length="80" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-U320900" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1288</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6030" e_stop="6225"/>
          <exon e_start="6908" e_stop="7014"/>
          <exon e_start="7128" e_stop="7184"/>
          <exon e_start="7279" e_stop="7339"/>
          <exon e_start="7424" e_stop="7667"/>
          <exon e_start="8508" e_stop="8867"/>
          <exon e_start="9542" e_stop="9590"/>
          <exon e_start="10627" e_stop="10659"/>
          <exon e_start="11124" e_stop="11194"/>
          <exon e_start="11927" e_stop="11956"/>
          <exon e_start="15610" e_stop="15689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGATGATCATGATCCTTCCAAGGCAGCTGTAAAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAGGTGAGTTAAATGATTAAATTTGGAGTTCGATAGATATCATTGTGATTAATGGTTTTCTTTAGAAATGGTAAGGTGTGTTCTTGGTTTGTCTGTTCTGCTGTATCAAGGTGCAAATTTGTGAGGCATTAACCATTGATCCCAGTTGAGCACTGGGTTGTCAAGGGTGACCCTGAAGGAAGGTTCAAAACGGGCCCTTCAGTATCACCATCAAGGTTTTAAGACACATTTCCTTGCCAATGAGCCTCTTCTTAAGAGGCAACTCTAAACAATTGATCTTTCACTTTATCATATTTTTTTTAATTTCTTACTGGTTGAGATTGTCCTCCAAACTTTCTTCAATGATTTGTGCCTTCCTTTACCCTAACTTGACTTTAGATCCCTCAACTCCCCTTTTGTTTTCTCCTTCTGCTTCTTCAGCATCCAGAATTACCTTTTCCAGTTCATGAAGGAGCAGGCCATCATCTGTAAATTATTTATCCTTTCTTTATTGTGGGTTAATGTTGTTAATTCTATATGGCTGGAACTTAGTGGTCTTGCATCTTCTCAATCCTTTTATAGAATGTTTTGGGAAGTTTAGCCTGAATTTTTTTTTTGAACTTGGTTCTGATAACAACTTTGTGTGGTGTCCCTCACCTGACTTTTTATGTTATTGTTGGTCTTTTGTTTTGTGAAATTTTCTCAGGTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAGGTATTTGATTGAATTTGTAATCGTGAGATTTATTTATGTATTTCGGTTGATCATTATCCTAATCTGATATGTATGTTTTGTTTATGCTAATCTTGCCTCTATGCTTTTGGTAGTGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAGGTATGTCTGATAATCTTCCTTTTTTACTTTAATGGCTCTTGAGATTTTGACAACTGATGAGACTGCATTTGCATTATAAAATGTAAAACCACAGTAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAGGTAATTGGTGCTTATACTTATAAATAAATACGGCAATGTAGGGTTTTTCCGTATTGGTTTCTTAGTGAGAATTTTCTTTTTTAGATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAATTTATCCTCTCTTATATTGTCCGGTCATATTTACCCCTATAGTTATACTTTCTTTCCGTATGTACCCTTCTACTTTCATACTATATTTACCTTCTAGAGTTAACAGAAAAAGTTACCTCCCAATTCTGATGACCCACGATAACCTGAATCCCTTTTTAAGGCACTTATTCATTTATAATTTTTTAAATGCCACAACTCTCACATTAGCATAAAGGTTTGTTTTAATTAATATTCTCAATACATCAACATAATATACACGTATAAAGTATAGGGAGAAAAATTAAAAGTTGATTAATAAATTGAATGAAAAAATGCTATTGATTGATTGTTATTGGATTAACGATTTTTTGATGATTATATAAATCATATATTACCAGAAGTGGAAATTTGGATTTCCAAAAAAGATGGTAGACTTATAACACACGAAAATTGGCAAAATGGGTCGTTTACCTGCTTTGGAACTTGTTTCACTTTGAAATAGGCCTTTCCGGTCGTGGTGATCAACTGACTCTATCACTAAGGTCTTAATGGACGTTCATGTAAATTTTCAGCAAAACTGATGTTGGAAAACTGGATCACCAAAAAAATGGTGGACTATAGCACACGAAAATCAACAAAATGAAGGAGGGCGGTGGTTACCTGCTTTGGGGTTTGTTTAACCTTTAAAATGAGTTATTTTGACTCCATAGCTAAGGTCTTAATGGATGTCAATCTAAATTAGCAACAAAAAATTTGTTGGAATTCTGAATCACCAACAAAGATGTTAGACTATAGCACACGAAAATTAAAAAAAGGGGGCTTTACTTGCTCTAAGGCTCGTTCGTTTGACCTTGATAATGGGTTATTTTGGCTATGGTGGCCATTTGGCTCTATAACTAAGGTCTCATGAAGTATAACACACAAAAATTGGCAAAATGGGGGTTTACCTGCTCTAGGGATTGTTTGACCTTGAAAATAGGTTGTTTTAGCCGGGGTGACAATTTGGATCCATAAATAAGGTCTTAACGTACATCCATGTAAATTTTTGGCAAAAATGATAATGAAATTTTGGATCACTAAAAAAGATGGTAGACTATAGCACATAAAAATTGGTAAAATGGGGGGTTTACCTGTTCCGAGACTCGTTTGACCTTGAAAATGAGTCTTTTTTCTGTGGTGACCAACTGAATCCATAACTAATGTTTTAATGGACCTCCATATAAATTTTTTTGGCAAACACAACTTCAGAATTCTGGATCACCAAAAAAAATGGTGGATTATAGCACACGATAATCGATAAAATGGGAGGTTTACCTTCTCTACGCTCATTTGACCTTAAAATCAGGCTATTTTGGCCGTGGTGATCAACTGACTCCAGAGCTAAGGTTCACGGATGTCCACGTAAGTTTTTCACAAAAGTAATATCGGTATTTCAGATCACTAAAAATCTCATGGACTATAGCACACGAAAATCAATAAAATGAGGGGTTTACCCGCTCTGGGATTGTTTGGCCTTAAAAATTGGCCGTTTTGGCCGTGATGACCAGATGACTCTATCTTAGTTCTTAACGCATGTCCACGTAAATTTTTGAGGAAAATGATGTCAGAATTCCGGATCACCAAAAATCCCATGAAATATAGCACACAAAAAATCGCCAAACAAGGGGTTTAACTTTCTCTAAGGATCGATTGAACTTTAAAATGGGCCTTTTTTATCTGTGGGTGAAAAAATTGACTTCATATCCTAAGGTCTTAAACAACCTTCAATGGTAATTTTTGAAAAAAATAACGTCAAAATTCTGGAATAAAAAAAAAAAACGGGGGAACAATAACCCCAAAAAAAAATAAAAAAAAAGGGGGTTTTTACCTATTGGTGGGGGTTCATTTTACAATTGAAAAGGGGTCATTTTTTGCCGGGGAAGACCCAATTTAAATCCTTTGGTAAACCCTCTTAAAAGGGGTGTCCCTTGTAAATTTTTTTGGGAAAAAAACCGCCCAAAAACCCTAAAACCACAAAAAAAAAAATGTGGGGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAATGAGCAAGGAAACTTCAAGGGCGCATCTAGACAAAAGGGCCTTGTAACTGTCAATTAGGGTTTGACTCTTAGACATCTAAAATGTTCACCCCAACATCTAGTGATTTCATATTTCTTTTTATAATCTCTGTGTCCAAAAAAGAATTTAAGAGGTCAAGATAATAATCATAAAAGACAAAAGAATAAAATAGTTCTTCCTCAATAATCTATTGTAATTTGAATAGTTATGGAGAACACCATACCATTCTTTAGGGTAATCGATCCTAGCAATCTTTGAGATGATCACAGACAATGTAAGGGCAATCTGCACCAGGCAATCACGCAACAGTTGAGAAATCAGGAAAGCACTTACAAATATGTCAATCAATGACAAAATAATTCAGATCTCTAAGTAGTGAAGCAACAAATGTCGATAACAGGGATGACAATTTTCAGAGAAGAAAAAAGAGCTCTAGCTATCTGTATGCTCATTACAAAACCAAACATAAATCTGCATCACCTGGTAATTCTCTTCCCTCAAGTGTGACAACAGTTTTTGTCTTAAATGTAATTTCTCCTCATTGCTAATTCCCCTGTCAAGATGTTCCAGAGATAAGCAAATAGTCATTTACAGCAGTAATACAAATATATAAACATGCACAGGAAGGAGAAATCACAACACATGGAACATAAAAAGGCAAATCAGAGCTAGTTGGGAAGAAACAAGCAATCTGAAAATTCAATCCACATTCATATGTTGCATCAAGCCACCAAAATTGAATAATAACCTATCTTACTGCAGCCAATAGCTGAAAATTGCCATTATCATCTTGACAGTGACATCCTCTTTTCTCACACAGTGGCCTGCTTTGCATTTGTAACTATACTTCCATAATTTTATTTTATCACAGAATTTCATTTGTCTGCATTATGAAAGATAAGTTGAGGGTTCTTCACTTCTGATGATGCACTTTTGTCGGATTCTCAAAAAATACAGTACTTCTGGAGAATCCAACACACAATATTGACATTTTTGACGAGCTTGAGCCACATAAATGGGAAGATACATAATTTGATATCCCAATAACACTGTCTTTTTTTTCATTTTTTGACAAGTTTCAAACTAATATTACCTTGTAAGTCATACATGGGTCATTTCTTTTGATGAATATCTTGGAAATAAATTATGTAAGTTAAAGTGCATTCAGAATGATTCCTTCACTGAACAATATAACGCTGACCATTTTCTTTGATTGAGGACTTTCCTTTAGACATTGAAGAAGGAACATATGCTAATAACTTATACTCATCAATCTCAAATTTACAGTCTGATATTCTCCTTTCAGATGACCCAAAATTGTGGTCCATTTCCTTGAACAAATAATCATTCAGTCAGAGATAATTTAGGGCATCATTTAGAATAGATAGTAGGAAAACAACAGGGAATTTCTGCAGTAAATAGGACAAAGATTTACAAAGAACACGACCAGTTTAGGTTAATAGTGTAATAAATTCCTAGAGTTCATTCCATCTGCATCCTTTAGCTTTCCAGAATTAGAGAACTAGTCATGTCCAGAAACAGTTTCAAAGGATTTTTCTGTAAAATATGGGGAGTACTCTAAATTGACTTATACACATATAGGATATACATATATAAGAGACAGAAGCCTTTCTGTTAACAAGCTATATATTAAGGAGGTGAAGGAGCATCCAGGTGGTAAGCTTGACCCCTGGAAGCAGATTTGGAGGAACAAGGTGCCAACCAAGGTAAAGTGTTTCTCTTGGTTGGTTGCCAGAAGAGCATGCTCCACTCGTGAGAAATTGAAAAGGAGGGCTTTCTATATTGCCTCTTGGTGTTCTCTCTGTAATGAGAAATGAGGAAACCAACATTCATCTGTTCCTCCATTGCAAAGTGACAACACAATTGTGAAACCTTTTTCTGGGACCAACACATACAGATATGCCTGAGCATACAGCAGATCAACTTAGTTGCTAGATCAGCAGAGGGGGGAGAAAATGGTAAAGTATAATATCATCATGCATTTGGTGGTGTATTTGGAAAGAAAGAAATAGCATATGCTATGATAACAAAGTTGATTCGATAGAGAAAGCCAAATGGAACTGCTTGACTACTTTTATTTTTGGTGTAAAGAGTAAGGGATAGAAGAAGCTGCACAAATTTGGATTTTACAGGCTCTTTGTAATTTATAAGCCTTTTTGTTTTTTCTTTATTGGAAACCAATTTTTGGAGGTCTCCAGCATTAAGGATGAATACAAAATTATCTTTATAAAAAAAAATATATATGAAAATTTTCAAGGATGGGAACATTTGGGGATAAAAGGAGTACAACAATTCTTAGGACTCCTACAATTTGTTCCATCTCCATCCTTTAATTTCCAGAATTTGAAAACAAATTATATCCACGCAATTTCGAAGGAATCCTATAATGGGGAGTACACTAACTTATCTTGCACAGACATACACAGATACACATATAACAAACATGCATACATATATAAGTGTGTTTGGGGAATACATTACTCTTTTTCTGTTCTGCACTAAACAATGGATTTCCGGATACAATTGGGATGACACTATCTTGGTCATAGTTTTATAGAACAATGCAACAATCGAAGATTAGGAGGAAAAAAGAACTTGTATTCAGTAAACCCAGAACATGCACAACTGAGTAATAAACTTGAATACTCACGTGGAATCACGCTTATTCCTCCAATACCGATTTATGCTATTTTTGAAGTAGACGGATGCCAGTAATCGAACATCCACTTGAGACGCCAAGTCCTTAGCAGTAATCACTTCCTACAATGTTAAAAACATCACCTTTCCGCAACTTATCATTCAAAAACCCTAAAATAAGAAAATCAAATGTAAAAAAGAGGGAAAGAATTACCATAAGACAAGAACAAAAACCCGGCCGGTTTTCTGATTGAGCTAGGGCTGCTTCAGCTGGTTTACGCACGCTTTGTTCGCCGCTGAGTGAATTTGTCAGCAACGAATACATCGCTGGCAGGTCGGAGGCTGATAAAGCCATGGCTGAACCAATCGGATGAGTTCAAGCACTGAGTAGAATCGTTGAGTCAAGCAGCAGCGGAGCAGAGGAGGGAGAAAATGGAAGATTTTGCGGAGGATTTGGATGGAAATGGCGATTGCTTAGCGATCTGATAGGAATGGAAATGCAGGAGAAGTTCACTGTATATAAAATGGAGAAGAAAATGGAAAGAAGTTTGGAGTTTTGTTAACCTCTTCCCTATTTGGCATGGTCAGAGGCTCACACAGCTGAACTTCTATATCTGTTTCTTTTCTTTTTTTGATCTTTTTGTTGAAAGTGCTCCATAGTGATGGAGTTTAAATATGGAGAAAAGAATTACAAATTGTAAAATTAATATTAGGTTAATGTTATAAAATGAGAGGAAAAAACAGTACATATAAAAATGCTAAATAAGAATTAAGCATCAAATCACGATAAAATAAATGCTATGATTTTTTTTTATTATCACGTGGACGAAAGACATATAGTTAAATATTTCACCGTGAAAGATCTACTTGAATTATGAATATGTTTAAAAGACTGTATAAGTAATATGACCATTTTAAAAGCAACAAAATTGTCAAAGACCACAAGTGGGTCATACATTGCGATATCGATGTTGTTAAGGAACATTCCTCCTCTCTTCTTTTCATTGCCTATGAAAGATAAAGATGTTGTTTTGACGCAGAATGAACAATTCATTGTGTGTGCCTTTAATATAGTTATAAGTGTATGAAAAGAATTATTTTATGCATAACCTTAGGCTGACAGTTATAATGTTTTATCTAAATATTTAAATGCACTATTTTTATGATGTTCGTGGTAAAGTATTCACCAATCACTACAACCTACAATATTTATTAAGAGGAATCTTAATCTGAGATAACACGAGTGAATAGAACTACGGAAAGAATATACTTAAGTGACTATCTTATATCATTCAAATAAGATTAATTTGATGGTTGATGTGTTGGATAGGAAGTTTAAAAGCATGGATACCCTAGCTTGTTTAGAAGTTACAAAGTATATATTAGTTCGAGAGGTTCAGACTTGAGCTAACAATCTTAATTACAAAGCTTGAGTTGTCAGGATCCTATGGGGTATTGGTTCGTATGCAAGTTAAAATTTTCTTTATGGATCAGATCAAGGATAGCTAATTTGAAGATATTCAAGTTCAACACAATTTATGAAAAGGTCTTGCAAGAAAAAACAAAAGAGTCAATGATTGATGGTGAAGGTGTCCTAAGGGGAGTGTGTGTTCCACGTGTTAATGAACTAATCAAAAACTATTCTAATTGAGACTCACATTTCTAGATATTTTATACATTTTAGATGTATCACGATTTGAAACAATATTATTGATAGGGTAAACAAAGTGAATATTTTAAGTTCATTGCAATATTTGAATTGCCAGTAAATAAAATAGGAGTACCAGAAGCTTCAAAAGAAGCTCAAACGAATCAAGCTTCGATTCATTCATGCCGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATTT</genome_strand>
        <mrna_strand>GGGAGATGATCATGATCCTTCCAAGGCAGCTGTACAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG.................................................................................................................TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG..............................................................................................TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG....................................................................................ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACATATTCATGAGGGGGGGGGCCGGCTTCTTCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTATATA-GTGTGGAATAAAAAA--AACCTN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATTTAGA-A-ATAATAT-CTCATACCAAGGTCT-GATATCTCATA-TTATAGGTAAAATATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTTCCTTAGTTTTCTTTTCTGAGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTAGTTCCATGCTATTTTCTACATTCTTCCCACAATTTTCACTACTTTTTGTAGTAATATTTGTTACTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6030" PGL_stop="15689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6030" e_stop="6225"/>
            <exon e_start="6908" e_stop="7014"/>
            <exon e_start="7128" e_stop="7184"/>
            <exon e_start="7279" e_stop="7339"/>
            <exon e_start="7424" e_stop="7667"/>
            <exon e_start="8508" e_stop="8867"/>
            <exon e_start="9542" e_stop="9590"/>
            <exon e_start="10627" e_stop="10659"/>
            <exon e_start="11124" e_stop="11194"/>
            <exon e_start="11927" e_stop="11956"/>
            <exon e_start="15610" e_stop="15689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.882" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.123" e_score="0.992"/>
          <exon-intron don_prob="0.953" acc_prob="0.000" e_score="0.531"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.606"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.634"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.733"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6030" e_stop="6225" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6226" i_stop="6907" i_length="682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6908" e_stop="7014" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.934">
            <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7128" e_stop="7184" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.779">
            <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7279" e_stop="7339" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.895">
            <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7424" e_stop="7667" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="8508" e_stop="8867" e_length="360"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.123">
            <gDNA_intron_boundary i_start="8868" i_stop="9541" i_length="674"/>
          </intron>
          <exon e_serial="7" e_score="0.531">
            <gDNA_exon_boundary e_start="9542" e_stop="9590" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.953" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9591" i_stop="10626" i_length="1036"/>
          </intron>
          <exon e_serial="8" e_score="0.606">
            <gDNA_exon_boundary e_start="10627" e_stop="10659" e_length="33"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10660" i_stop="11123" i_length="464"/>
          </intron>
          <exon e_serial="9" e_score="0.634">
            <gDNA_exon_boundary e_start="11124" e_stop="11194" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11195" i_stop="11926" i_length="732"/>
          </intron>
          <exon e_serial="10" e_score="0.733">
            <gDNA_exon_boundary e_start="11927" e_stop="11956" e_length="30"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11957" i_stop="15609" i_length="3653"/>
          </intron>
          <exon e_serial="11" e_score="0.857">
            <gDNA_exon_boundary e_start="15610" e_stop="15689" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6030" stop="6225"/>
              <exon start="6908" stop="7014"/>
              <exon start="7128" stop="7184"/>
              <exon start="7279" stop="7339"/>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8867"/>
              <exon start="9542" stop="9590"/>
              <exon start="10627" stop="10659"/>
              <exon start="11124" stop="11194"/>
              <exon start="11927" stop="11956"/>
              <exon start="15610" stop="15689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAGATGATCATGATCCTTCCAAGGCAGCTGTAAAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAG : GTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG : TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG : TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG : ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG : GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATT : CACACGAAAATCAACAAAATGAAGGAGGGCGGTGGTTACCTGCTTTGGG : CCTTTTTTATCTGTGGGTGAAAAAATTGACTTC : GGTTTGACTCTTAGACATCTAAAATGTTCACCCCAACATCTAGTGATTTCATATTTCTTTTTATAATCTCT : TATACTTCCATAATTTTATTTTATCACAGA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATTT</gDNA_template>
            <first_frame> G  R  *  S  *  S  F  Q  G  S  C  K  S  I  I  I  S  T  A  G  K  D  F  G  D  E  H  E  L  S  C  T  A  N  F  *  S  I  T  V  Y  T  P  S  E  I  W  F  S  *  *  R  K  H  T  P  L  P  R  R  H  V  A  *  K   : G  *  Q  C  Y  L  F  P  E  E  D  N  W  F  G  P  L  Y  N  S  D  F  E  V  A  S  S  T  *  *  T  *  S  D  Y  E  :  C  M  Y  K  C  Y  N  G  W  K  *  G  F  K  *  R  R  V  *  :  *  *  Q  C  K  L  *  Q  T  S  C  A  K  Q  G  V  E  E  E  T   : D  E  T  L  G  P  N  K  P  D  F  I  G  E  L  S  E  R  Q  S  S  N  L  F  I  S  S  W  G  I  L  *  C  S  H  W  *  I  A  P  F  S  T  Q  S  I  K  T  S  I  E  D  A  M  S  *  I  V  G  V  N  S  *  C  Y  F  L  S  W  S  F  E  F  N  D  L  T  K  A  *  E  R :   S  H  L  E  A  C  C  C  V  V  I  H  E  V  P  F  F  L  P  L  L  F  G  W  I  V  V  V  L  G  G  L  F  C  P  S  C  A  G  G  E  R  R  C  C  Y  *  G  H  S  P  L  S  H  P  I  F  L  P  I  R  S  G  C  E  L  V  L  *  I  A  *  S  S  H  V  V  V  F  K  A  *  R  I  R  A  *  G  C  N  T  G  *  C  A  V  T  I  C  S  K  Q  E  I  G  T  N  D  N  S  N  G  I  Y  *  L  F  *  L  F :   T  R  K  S  T  K  *  R  R  A  V  V  T  C  F  G  :  P  F  L  S  V  G  E  K  I  D  F  :  G  L  T  L  R  H  L  K  C  S  P  Q  H  L  V  I  S  Y  F  F  L  *  S  L :   I  L  P  *  F  Y  F  I  T  D :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  </first_frame>
            <second_frame>  G  D  D  H  D  P  S  K  A  A  V  K  A  S  S  S  A  L  L  A  R  I  L  V  M  N  T  N  Y  L  A  Q  L  T  S  D  P  S  L  S  I  H  L  Q  K  S  G  F  P  S  E  E  N  I  L  L  C  L  V  D  M  W  L  E  K  :  V  D  N  V  T  S  F  Q  K  K  T  I  G  L  A  L  S  I  I  L  T  L  R  L  P  Q  V  L  D  K  L  D  Q  I  M  S :   V  C  T  S  V  I  M  G  G  S  E  D  L  S  E  E  E  S  S :   S  D  N  V  S  S  S  K  P  H  V  P  S  K  E  L  R  R  R  Q  :  M  K  L  S  D  P  I  N  Q  I  S  L  E  N  S  V  R  D  N  L  Q  T  C  S  S  L  H  G  E  S  F  N  A  V  I  G  R  L  H  P  S  V  L  N  Q  L  K  Q  A  L  K  M  P  *  V  K  *  W  A  S  I  L  D  V  I  F  *  V  G  L  L  S  S  M  I  S  P  R  R  K  K   : G  L  T  *  K  H  A  A  A  S  L  F  M  K  F  H  F  F  C  P  Y  C  L  A  G  L  L  L  S  W  V  G  C  F  A  L  V  V  Q  G  E  R  G  G  V  A  I  K  G  I  L  H  L  A  T  Q  F  F  S  P  F  V  R  G  A  S  L  C  C  K  *  H  D  P  L  M  S  W  F  L  R  H  K  G  S  E  L  E  V  V  I  L  D  S  V  Q  S  P  F  A  Q  S  R  K  *  G  P  M  T  I  Q  T  A  F  T  N  Y  S  S  Y   : S  H  E  N  Q  Q  N  E  G  G  R  W  L  P  A  L  G :   L  F  Y  L  W  V  K  K  L  T  S :   V  *  L  L  D  I  *  N  V  H  P  N  I  *  *  F  H  I  S  F  Y  N  L   : L  Y  F  H  N  F  I  L  S  Q   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  F </second_frame>
            <third_frame>   E  M  I  M  I  L  P  R  Q  L  *  K  H  H  H  Q  H  C  W  Q  G  F  W  *  *  T  R  I  I  L  H  S  *  L  L  I  H  H  C  L  Y  T  F  R  N  L  V  F  L  V  K  K  T  Y  S  F  A  S  S  T  C  G  L  K  R :   L  T  M  L  P  L  S  R  R  R  Q  L  V  W  P  S  L  *  F  *  L  *  G  C  L  K  Y  L  I  N  L  I  R  L  *   : V  Y  V  Q  V  L  *  W  V  E  V  R  I  *  V  K  K  S  L   : V  V  T  M  *  A  L  A  N  L  M  C  Q  A  R  S  *  G  G  D  R :   *  N  S  R  T  Q  *  T  R  F  H  W  R  T  Q  *  E  T  I  F  K  L  V  H  L  F  M  G  N  P  L  M  Q  S  L  V  D  C  T  L  Q  Y  S  I  N  *  N  K  H  *  R  C  H  E  L  N  S  G  R  Q  F  L  M  L  F  S  K  L  V  F  *  V  Q  *  S  H  Q  G  V  R  K  :  V  S  P  R  S  M  L  L  R  R  Y  S  *  S  S  I  F  F  A  P  I  V  W  L  D  C  C  C  P  G  W  V  V  L  P  *  L  C  R  G  R  E  E  V  L  L  L  R  A  F  S  T  *  P  P  N  F  S  P  H  S  F  G  V  R  A  C  V  V  N  S  M  I  L  S  C  R  G  F  *  G  I  K  D  Q  S  L  R  L  *  Y  W  I  V  C  S  H  H  L  L  K  A  G  N  R  D  Q  *  Q  F  K  R  H  L  L  T  I  L  V  I  :  H  T  K  I  N  K  M  K  E  G  G  G  Y  L  L  W   : A  F  F  I  C  G  *  K  N  *  L   : R  F  D  S  *  T  S  K  M  F  T  P  T  S  S  D  F  I  F  L  F  I  I  S  :  Y  T  S  I  I  L  F  Y  H  R  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6031" stop="6225"/>
                    <exon start="6908" stop="7014"/>
                    <exon start="7128" stop="7184"/>
                    <exon start="7279" stop="7339"/>
                    <exon start="7424" stop="7585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDDHDPSKAAVKASSSALLARILVMNTNYLAQLTSDPSLSIHLQKSGFPSEENILLCLVDMWLEKVDNVTSFQKKTIGLALSIILTLRLPQVLDKLDQIMSVCTSVIMGGSEDLSEEESSSDNVSSSKPHVPSKELRRRQMKLSDPINQISLENSVRDNLQTCSSLHGESFNAVIGRLHPSVLNQLKQALKMP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8519" stop="8719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHAAASLFMKFHFFCPYCLAGLLLSWVGCFALVVQGERGGVAIKGILHLATQFFSPFVRGASLCCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 17528 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 17528 bytes was the average size of a spliced alignment
$ 5848 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5848 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 4 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 05:31:44
-->
