<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 11:48:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317351" ref_strand="-" ref_description="SGN-U317351        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | hypothetical protein | chr4:7331969-7332871 FORWARD | Aliases: T4C9.210, T4C9_210(evalue: 2e-21, score=99.8) genbank/nr: gi|15234525|ref|NP_192974.1| hypothetical protein [Arabidopsis thaliana] gi|11282332|pir||T48147 hypothetical protein T4C9.210 - Arabidopsis thaliana gi|5281048|emb|CAB45984.1| putative protein [Arabidopsis thaliana] gi|7267938|emb|CAB78280.1| putative protein [Arabidopsis thaliana](evalue: 1e-19, score=99.8)">
      <seq>acatactggctgtttcgtgtgttccacttccgagatgccccgagaacttttcgtcaaaaattggtgaaaggaaaattcatggcagagcacgatggagatatctatgtgatatatacttgctctactgcaaaccccgtggtatataagttggaccaaattaataaaatttgggtggagatgcaaactttaggtggtttgactctttttgctagtttcctttcatcccaagcaaggacagacattcttggtgtgatgagaaatagtatttatttctctaaggttcgtttttatggaaggcgctgcatatcctattctctcgataaaaacagatactacccgcgaaagcagtgttacgattggggagaacaagatccttttgagagcatttggattgatgcaccggcggacctttcagcctttacctgaaaagatttgtgacagagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagctttaggtacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="15347" stop="12819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15047" g_stop="14601" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14600" i_stop="13426" i_length="1175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13425" g_stop="13128" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="741" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="750" polyA_stop="777"/>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U317351" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317351" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15047" e_stop="14601"/>
          <exon e_start="13425" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</genome_strand>
        <mrna_strand>ACATAC-TGGCTGTTTCGTGT-GTTCCACTTCCGAGATGCCCCGAGAACTTTT-CGTCAAAAATTGGT-GAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317350" ref_strand="+" ref_description="SGN-U317350        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains Pfam PF00646: F-box domain | chr1:21408073-21409621 REVERSE | Aliases: F12K22.16, F12K22_16(evalue: 3e-59, score=225) genbank/nr: gi|18406073|ref|NP_564725.1| F-box protein family [Arabidopsis thaliana] gi|25352240|pir||C96612 hypothetical protein F12K22.16 [imported] - Arabidopsis thaliana gi|11079521|gb|AAG29231.1| hypothetical protein [Arabidopsis thaliana] gi|20466201|gb|AAM20418.1| unknown protein [Arabidopsis thaliana] gi|30984578|gb|AAP42752.1| At1g57790 [Arabidopsis thaliana](evalue: 3e-57, score=225)">
      <seq>tcgtgccgcgcacactgaaaaaaaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggagcaactgaatggacaactgccaattaccaaaaccgtttgccatttgttagcagcatttggaataagttagttttctgcaatggtctcttttattgtctgagtcttactggctggttgggagtctatgatccagaagaacatacttggcttgttcgtgtggttccacctccgagatgccccgagaactttttcgtcaaaaattggtggaaaagaaaattcatggcagagcacgatggagatatctatgtgatatatacttgctctactgcaaaccccgtggtatataagttggaccaaattaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="18172" stop="14579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17872" g_stop="17756" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17755" i_stop="15717" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15716" g_stop="14879" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="955" r_length="838" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U317350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17872" e_stop="17756"/>
          <exon e_start="15716" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTTCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAA</genome_strand>
        <mrna_strand>TCGTGCCGCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAAGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339871" ref_strand="+" ref_description="SGN-U339871        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutaredoxin family protein, contains Pfam profile PF00462: Glutaredoxin | chr5:1035657-1036966 REVERSE | Aliases: MED24.17, MED24_17(evalue: 1e-51, score=200) genbank/nr: OSJNBa0073L04.11(evalue: 2e-52, score=209)">
      <seq>ttggtttcgcggaggagaaggagtttaagtccgttgtttgatccacagctcgtggaagctttcgagaaagagatgtctgcagaagaagaacagatcaagaaaatggtgtctgctacgccaatttctcgaaaagctaggcattcacaagaagcagagacaatgcttgagttatttgagaaaaaatgcccaccagaaggtgaaaatgcagttgtaatctatacaactacattgaggggtattagaaagacatttgaggattgtaatactgctagggctatactcgaatcgaatgatgttcgtgtgattgaacgtgatatatcgatggattcggggtataaggaagaactaagaggactaatggggacaaaagaggtgaaagttcctttagtgtttgtaaaagggaggttaattggtggagctgatgaaatgttgaagttggaagaggagggtaaattgggaattttactcgacgggatcccgagggcagctgccacgtgtgatggctgcgcggggatccggttcgtgatgtgtatggactgcaatgggagtagaaaattgttggccaaggatggaaagagtactgtgaaatgtggagactgcaatgagaatggtttgattcagtgtccaatttgttgttaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="23274" stop="22032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22974" g_stop="22332" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U339871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22974" e_stop="22332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</genome_strand>
        <mrna_strand>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317231" ref_strand="+" ref_description="SGN-U317231        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25871366-25872710 FORWARD | Aliases: MUB3.20, MUB3_20(evalue: 2e-20, score=96.7) genbank/nr: gi|56783978|dbj|BAD81433.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] (evalue: 1e-30, score=137)">
      <seq>gtatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatccccccaatgatgggaccaatatttaatctaagtatcaaatgttaaaaaaaaaaaaaaaaaactcgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="32093" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31793" g_stop="31628" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31627" i_stop="30675" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30674" g_stop="30493" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="348" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30492" i_stop="30163" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30162" g_stop="30084" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="427" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30083" i_stop="29892" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29891" g_stop="29808" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29807" i_stop="29299" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29298" g_stop="28713" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="1097" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1101" polyA_stop="1119"/>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U317231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1097</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31793" e_stop="31628"/>
          <exon e_start="30674" e_stop="30493"/>
          <exon e_start="30162" e_stop="30084"/>
          <exon e_start="29891" e_stop="29808"/>
          <exon e_start="29298" e_stop="28713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336006" ref_strand="+" ref_description="SGN-U336006        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacctctaattttcatagcaggcattttaagataatgaaagattcttttaatttcttaacgtcttgctcaacgattgcttttgtaacaggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattggtaactcttagttcctttgcattttactgtacacttgtctgcttattcactcatgatctcgacactcaaaacgtgcaatactgcaatatccttttgggtatgtcatttttatctcatattttgtgatgttggtgtcaagtcaaagctattctgttgacagttgagacgtcgtgcttcataattttgttgtaccaaccattatgttgtgtacccacgcactgttgtaacatgtgtactgaagctaatgtgactcaatatctttgatgatttcaatttaatctactatgtccacatatgacatgctcgttttgtttgcatattgaaattttattgctctctcttagttgagcggaacttgcacataatccaactactaatgctcttctgtttatatttttggtagaacttattgttattccttgtgaacctctatatgatccaaatgctgctaattttccgttcaagcacaaaattaaggcgtttgagcagagttttgcatgttttggcagctggcaaaatttcgcggcgtgtttcccttgtcattatcccggaacaagtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="30281" stop="28945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29981" g_stop="29245" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U336006" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29981" e_stop="29245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGC</genome_strand>
        <mrna_strand>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGT-CATTATCCCGGAACAAGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320579" ref_strand="+" ref_description="SGN-U320579        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:15199559-15200777 FORWARD | Aliases: F2H17.17, F2H17_17(evalue: 2e-38, score=157) genbank/nr: gi|21537164|gb|AAM61505.1| unknown [Arabidopsis thaliana](evalue: 2e-37, score=160)">
      <seq>acatttatattttttctctctctaagattttcttcttctttctctctctagaatgcctcaagttgatttggaaactctagtttcggcatgtgccggcggcgggagtgaccggaaagttgcatgtgagactttggctgacagtgacggcgacggcgaaaaacgtgtgaaagacgatttggatgatgaggagaagcaatcggagcatccgcctgatttccccccggaatcgttctggctttcgaaagatgctgagttcgattggtttgatcggaatgcctttttggaccggaaacagtctacgaaaggtatcggtcataatccaggttcgaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggagagaaacgcaaatccggattctgttcacgattactatcaatattccgatctaatcggagcaacaaaaaaccggctaggtccagtactgataaaacgctaggttcaaagtcgtcgacggagccgataaatccgctgagaaagagcaaaagtgtgagcgtagggaaaactcgcggaggagctccggttagcgttgaaccggttgggttaggaggaatgaaacggttctcctccggccggcgatcggaatcatggggaggcgatgaaatcaacgcagttgtttaagtgggtcccaatgaaagtggaaaaaacaaaaagcaaagcacaaaaagtcttgatggtagttggaattttggcaggaaaatttaacggcctttgttcacatattcggttaaaatttcgaggtaaaaaaaaaatgatacgtacttcttttggagtttatttttcttttataaaaatgttttttttttaacttttcaataatataatgataacgaataggtttttatatatatatatatatattgtaaatatattttggtttttggagtgaaggtttgtaaatttttactattttctattagtagtttagaatattataatgaaaattatttggaaataatgtttttttgtcttttattatttagtgttttgtatttttttggagaatcccgagatttcaggtatataaaatgtaatataaattgaattaatagatttacatagatttactgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="+" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="37191" stop="62025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37491" g_stop="38883" g_length="1393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1392" r_length="1392" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="+" ref_id="SGN-U320579" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1393</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37491" e_stop="38883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGACCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATCTAGTGTCTTGTATTTTTTTTGGAGAATCACGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGATTCGGCAGTACAGAGTTTAAGAA</genome_strand>
        <mrna_strand>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGCAACAAAAAACCGGCTAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGTCGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGAGCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATTTAGTGTTTTGTA-TTTTTTTGGAGAATCCCGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327661" ref_strand="+" ref_description="SGN-U327661        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbonic anhydrase family protein, low similarity to storage protein (dioscorin) (Dioscorea cayenensis) GI:433463; contains Pfam profile PF00194: Eukaryotic-type carbonic anhydrase | chr3:19549668-19552262 REVERSE | Aliases: F3C22.120(evalue: 8e-64, score=240) genbank/nr: gi|50253034|dbj|BAD29283.1| putative nectarin III [Oryza sativa (japonica cultivar-group)] >gi|50251401|dbj|BAD28428.1| putative nectarin III [Oryza sativa (japonica cultivar-group)] (evalue: 2e-63, score=245)">
      <seq>ttcagatatcctctttttttggaatagcaatggctgatgttggtgggatttcagtttgggtgatcaatatatgtgtagttcttctgctcaatctattttctactgcatctggtgatgctttgggagtcaaatttggttacacaggcccagtaggcccaaatggttggggaaggttaagcccaacatattcagcctgctcaaatggcaaatcacagtccccaattaacataattagccataattgtgttgttaacaagaatttaaagcccttaattatgcaatataatcattctgaagttgctactttggttgataatggctttaatgttgggataaaatatggtgataatgcaggaagtttaattgtggatggtaaaacttacaattttaagcaaatgcattggcattccccttctgaacatacaattgatggcaaacaatatgcagcagagcttcatctagttcattttgctcaagataatactatagcagttttatcaattctcttccatttgggccatcctgatcctctaatgaccaagcttcaaaacaaactgaatgagctagcaagggatgtagcaacacataaagaaacacaagtgcagcttggagtaattgatacacatgaaataaggaaacattctcacaaatattactcatacactggttctttaacaactccaccatgcactgaaattgtctcttggtacattcttggcaaggtgagatcaatatcaagagaacaagtagaagaattgagagctccattggatccaacatgcaagagaaatgcaagaccaactcaacccttaaatggaagacaaatccaaatgtatgaagcccaacccaccccttaattatcaaatggaagacaaataaatatgttatatgtgtacaaaaattcccctaataaaagactcctacgaaagaaagaaaaaaaaaaaacaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="45979" stop="40953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45789" g_stop="45776" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45775" i_stop="45671" i_length="105">
            <donor d_prob="0.736" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45670" g_stop="45574" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="111" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45573" i_stop="44038" i_length="1536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44037" g_stop="43817" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="332" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43816" i_stop="43714" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43713" g_stop="43607" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="439" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43606" i_stop="43455" i_length="152">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43454" g_stop="43352" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="542" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43351" i_stop="42560" i_length="792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42559" g_stop="42380" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="722" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42379" i_stop="41474" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41473" g_stop="41256" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="940" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="960"/>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U327661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45789" e_stop="45776"/>
          <exon e_start="45670" e_stop="45574"/>
          <exon e_start="44037" e_stop="43817"/>
          <exon e_start="43713" e_stop="43607"/>
          <exon e_start="43454" e_stop="43352"/>
          <exon e_start="42559" e_stop="42380"/>
          <exon e_start="41473" e_stop="41256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATATCCTCTGTAAGTCATCAATAATACAAATTGTTTTTCAAATTTTTTGTTTCATTTAAATATTTGATTTTTGGTTTTTGCAAGAAAATTGATACATTGGATTTTATTTTTTAGTTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTGGTAAGTCCACATATCTTTCTTTCGTATTACGGCTTTATCTGAACTCAATATTTTTTTACGTTGTAAAGCTAGTATGTCCAACAATATCGAAATATTCTACGGATATGAGTTATAGTGGGATGGTTGAGAACTGTAATCTTTTATCCTTCCTGAAAGGTCTTGGGCTCAAGTTTTTTAATGTGTGAGAATTCAGATTAGTTTTTGAATGGGCCCTACAATGTGTGAATTCAGATTAGTCGAACTCTAATATAGATATTGAATATCGAATGACAAAACAATGTGTTTTACCTTATTTTGAATATGGAAATCAATTAAGTGGCTTTGGGACCATGTATAGCAAATGTGATAGATGAAATTCCTTCACCCTTTGGACCGATGTGCAGTTTAGTTTACGGATTCAACAAAGCGCATAAAGTTTGGTTAAACTTTGTATTTGTCTTGAAAAAACCTAACATGTTTTAGAACCCTATAACTTAGTATGGTTAAAATATTAAACCCTGAATTTCCGATTGCCCATTCTTAAATAGATGTCTCGAATGAATTTGAATCATGTAAATTGAAAACCTATGATAAGAAGTACCTCCTCCCTTAATTGTTCCTACGTAATACAAATCAAAATTAATCTAGCTAATAGATTTAAAATATTAAATAATTAATAACTTTTTTTAAAAAAAGTATACGCAATAAAACCATCCTAGTTTGAAGCTTTGCTTTAATTGTTGAAAAATCTTTGACGTATTTGTAATGAGAATATGCTTTTAAAAGAACAAAACATCATGGTCATGATTTTTAATTAGTTGTCTAAAGTTCTTACTGTTTGTGTAGCTTTTTTGATTTTTTTATATACTATGATTTTAAAAAGTGTACATAAAATCTTTGGAAATTGTTTCTTTTATTTAATTTAACTTATATGTATTATTATGTCATCTTTAATTTACTTGTTATAACCGATAATTTATATTATTTTAAAAAAAAATTGTAGCTGTAGATATCATCTGACTAAATAGATGTCTGAAAAAGTCCACTAGTGAAATTTTTTGTATTATATCTATCTAAATATACAAATATTTCTACCATAAATACCGTTTCACTCTATAGTTTGAAAAAATTAAGTACATATTATCTCACTAATAATGACTTTGCATCATATATCAAGTTGGATACATGTATTAAAGATACTAGGTATATACTGAAACACAGATAAATAGGAGAAAAAGCGAGCGACAGAATCATTGTATCCTAGATATATATATCTTTGATACTATACATTCTAAAATGAAGATCCACAGAGAGCAAGAAGCGAGCGAGAGGGTTTAGAGAAGAGAGAGCGGGAGAGTTATTGTATCCTAGATACGTAAGAATCACGTTTGGATACAAGGAACAAACTACACTTAATTTGAAATACATGTATGTGGCAAAGTAAATATGGTATAGAACATAATTTTGAAAAACTAAATTGAAGGCGCGATATTATTAAGCCCTAAACTAGTGTGATTTGTATTATTTTCTCTAACTTAAAAACTCTTTTTGGGTTAGGTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGGGTTAGTTTTCTTAATCTTTTTTATCCTCCAAATTACTTACATATTTTTTCCATTTATTATTAAATTTTCATGAGATTAATTTAATAATTACCAATATTTGCAGATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACAGTATGATTATTCTTTACTTTTCTTTCATTTGTATATAATTTAATAAAATAAATATATTTTACTTTATCAATTATAATGAATTTAATGTGTTTTACTAATGAAAGAAAAATTATATTATATTTTAATAAATATTTTGTTATTTTATTTTTCAGATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAGGTATTTTCACTTTATTTTTAAAGCTCAAACTCGATACTTCTTATACGGATAGAAATAAGTTTGCCTGGCCCGATCACAACTTTGGTGGTACTTGAAATTTTATTAATTATTAGTCATTGATTCTCCTTAGAGGTTACAATTGCCGCGAGCAAATATATTAATAACGAGGAAGACTTTTTTGTTATGCTACTAATACTAGCTCTGTGTTCAAATTCTCTTTCTTGGTTTGAAGTCCAGTCGTTTAATTGAAATATGATCAATTGACCTGAACCCTACTTCTTTTTCACTGCTCCTGAAGCTGCTAACCTATCCCCTTCAATTGAACGAAAAAATTCTTTCATCGTGCTCTACTTCATAAGGGGGATGAGAAGGGTGGTCAATCCTCTCTCATATGTGTGTGTGAATATATAAATAATAGACTTCGAACTTAATTAGTAAATTAAATGTGTTTTGTATATATAATCATGATTTGAATTTATAAAATTTAAATTTTAGATTCATCTGTCAGTGTCATAGGTTGAGGCATAGGAGGGTTCATATAATCTCCATGCCCAAAAATTATACGAAATCTCCTCGACACAATTAAGAGTTCTTATATGTTCACTTCTTTATATTTTTGGTATACAATCGACAAATCAAATTTTAATTAAAAAACTTCATATTTTAAATTTCTTTTAATTAAAATTCTAACTCTGCTACGATACTCTATGATGTTAATAACAATGTGGGACATATCTATGATGTTAATATCAATCTCTAATTATTATTTTATTGGTTTTTAATGTTGATCAGCTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAGGTATGCAAATCTTTCTCCTTTATTTTCTTCTTGTATTTTGAGTTTAATTTGTTGGTTTATAGGAATGTTACACGCACGTATCTCGATTAATTCTACGTGTACCTAATAATGTCTCTAATCGGCACGTGCACCAGGTAACTCTACTATTTTGCCTAGCTAAGAAATTTGAACATGAGACTTCATAGTTCTCAACTCACTTCAATAATCACTAAACAACACGTCAACACCATTAAGGATGGCAATGGGGTGGAGCGGATGCGGGATGGGTCGGGTTTAAGGCTGTGCAAGACGGGTTGGAATGGGTTTTTTCAAATTAAGGATGGGGGAGGGGTTGGATTGCGGTATATGTGATTTCATGTGGGTTTAAACTTAATTTCAATCTTTGACATGTTACAAGAGTGATATAACATTATTTATTAAGATAATTTCTTTAAAGCTACTAAATATTCATGATAGTAAATGAAAATGGTTCAATAAAAATAATTCAATCTTTTTCACATGCTTCCCAATTGACCTCTAAAAAATAAAAATTTAAGTCATTATCCTAATACAACTTAATGAAAAAATGATTTTTTTTTTTTATAAAACTTAACTAGAAAAAAAATACTAAAAAAATTATGCGGAGCGGGTCTATGTAGGAAGGGGTGGGAAAGGTTGAAATTGAAAAAAAAAATGTTATGCGAGACAGGGCGAATAAAAATTTTGTGAATTAAGTTCAACCTACCTCATCCCACACTGCTTCATTTCCATCCCTAAACACCATTAGGTGCTAATGTCATAACTAGTACTCCCTCCGTTTCAATTTACGCATGTCGTTGTCTGATTGGGCACGGAAGTATTATGAAATTTCATAGATAATTGAATAATGAATAATTATTTTTTTTAAAAAAATTGTGAATATTATAGGTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</genome_strand>
        <mrna_strand>TTCAGATATCCTCT.........................................................................................................TTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG.......................................................................................................ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA........................................................................................................................................................ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320569" ref_strand="+" ref_description="SGN-U320569        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:At4g00830.1); similar to putative RNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAP52145.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif) (InterPro:IPR000504); contains InterPro domain RNA recognition, region 1 (InterPro:IPR003954) | chr3:19532644-19535884 FORWARD | Aliases: None(evalue: 1e-126, score=450) genbank/nr: gi|15231284|ref|NP_190834.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|11358672|pir||T49019 probable RNA binding protein - Arabidopsis thaliana gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana](evalue: 9e-125, score=450)">
      <seq>gcgaattggcggccaatcggccgaattggagaagaaatttactttcagagaaactaaaattagctgtcgattatcgcttttgcttcaatagttgaagaaggaaaaagggttctcaatttctatctcaggagttgcagcgccagattatcttcctagaaatataagatgccgagaacaagggccagtgctgcagctattaaatctgaacccgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaagaggaggaggaagaggaggaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgtagatgctgaggatatggagaaaaagcatgctgagctcctcgcccttcctcctcatggttcagaagtgtacataggtggtattactcatgatatatctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttacctatagaaacaaggaattggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcagtgtatgtgaagaacttgccccaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacaaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgaaaaatatgagatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaaagggagccactcttccaatttaccctcctcgtattggatatggcatgatgggagccccttatggtgctctaggtgcaggttttggtgcaggatttggtggtccaggtgtagcccaaccaatggtttatggaagaggagctacacctggtggtttggcaatgatgccgatgcttttacctgatggaaggattggatatgtcctgcaacaaccaggagttatgcattctcctcctccaacatcacgaggtggacgtagtggaggcagttcaagtgacggaaggcggggtgacagtggtggacgagggcgtccccgttacaacccatactaggtgtaaatgaacgccattgatgttataaagcacaatgtttgctgtcagtttgacaatatttgactgatgtatctgtagcctgtttaaagaatagactctcatctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="+" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="52070" stop="56871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52374" g_stop="52829" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="585" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52830" i_stop="52908" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52909" g_stop="53025" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="702" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53026" i_stop="53186" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53187" g_stop="53327" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="843" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53328" i_stop="53550" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53551" g_stop="53721" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="1014" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53722" i_stop="54200" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54201" g_stop="54408" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1015" r_stop="1222" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54409" i_stop="54503" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54504" g_stop="54691" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1223" r_stop="1410" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54692" i_stop="55900" i_length="1209">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55901" g_stop="55986" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1411" r_stop="1496" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55987" i_stop="56337" i_length="351">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56338" g_stop="56577" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1497" r_stop="1736" r_length="240" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="+" ref_id="SGN-U320569" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1607</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52374" e_stop="52829"/>
          <exon e_start="52909" e_stop="53025"/>
          <exon e_start="53187" e_stop="53327"/>
          <exon e_start="53551" e_stop="53721"/>
          <exon e_start="54201" e_stop="54408"/>
          <exon e_start="54504" e_stop="54691"/>
          <exon e_start="55901" e_stop="55986"/>
          <exon e_start="56338" e_stop="56577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAAGTAAGAGCTTTTTTTCACGTCTTTGATGGTGAATGCTTGTATTTGCCGTTGATGTTCTAGGTCTTTGCATAATTTTCGTTATATTTAGGTCATTACATTTTAATACTAAATAATTTGTCTGGTAAAAATATATAGTTCTGAAAACTACAATTCTCAAAACTACTTCTCCCTACATGGAGATGTGCGTCTTCCAAAGGAAAGACTCCGGAATAGTACCTAGGCATAGTTGAAGTGTATGAATGGAGTTCTAATCCCAATGAGTTAATAATGTTTATATATGTATCATTTGCATGTCATGTTTTTTTCTTATGTTGTATTCTTAACTTAGTTTGCATTGATCGTGAGCGGTTATTGGGGTTTTGGGACAAGTTAAATCTTGACCTTCGGAAAAGGAGTGTTTTGAGGCAACTTTGCCCACTTGATTTTGGTCTACTTTGTTTCATCTTATCACCTTTATTTGTCATGTTGTTGAACCATAATACTCAGTGATGGATACCTGCCCCACCCATCCCAACAAAGAACAAGCAAAAAGATATTTGTTGTTTGGATAATTTCAAACATTTGATCCCCTTGGCTTTAGCATAGCGGAGCGCACATCACGTGATGTGTAGTTATGCGCACGTAACGGGTTCAAATCTTGCTGCACAAAAGCTCGGTAGTGTAGTGAAGAAGTATAAAGGGATGGGCTCATTATCCATTGAGTTTCGTACTGCATGCTACTAGCCTCAATGATTTTCCCATTATAAAAGAATAATCTTAAATAAGAGGATGGGGGGAAGAGTAAAGACAAGACGAAAGCAAGAGTTCCGGCATCTTACTTTACTAGTTTCATTTCCGTATGATACTTTCCTGTTGATCTGTAGCTTGTAAGCAAAGTATTCAGTTGCTAGGGTCTGTTAGTTTATTATGTGGCAGGTTGTGTGTGGCTTTTCTATTAATGATGATGAAGATGATTTATCATCTACACAATTTTGACAACTGTGTTCAATATGTAAAGCAAAAACTGTGGAGATAACCTGTTTCCGATGTGTTAATATTACATATGCTCATTCAGAGACCAAAAAATACCTATTTCAAAATTTCAGTTTTGATTAAATCTAAATAGATGAAAATCACAGGCCTTCTATAGTCATCCTCTTGTATAGCTTGTGTTTAGATAGATTTGTGAATCTGCAGCTTTACTAACACTCGTTGCTCCTCACTTCACAGCCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCTGTAAGTACAACCTGTCTATAGCAGTTGCTTCGCTAAGCGTGATAATGAATGGAAAAGTCCAATCTCTGATTTTATGATATAAAGGAAAACTAGTGTCCAGGAGCAAAACAACTTCTTTCTGCATTTTCTGAACTCCATTTATCGTGAGTCGTGGCTGAAATTAACGAAATAGAAGACCATTAATGCCATAATATCTAAAGACAGGCTTCATTTCTAGTGAAGCATTAAATACCATACTATTAGTAATAGGATGTTTAATTAGGGTTCCATCAGAAGTGCTTGTTCCCAAATGCTTCAATGGTGTTTAGCTTGTTTTCGTTGTTCTATTTCTGATCGCTCTTTCCCATCCAGGCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCTACTCTCT</genome_strand>
        <mrna_strand>AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT...............................................................................................................................................................................................................................................................................................................................................................GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332510" ref_strand="+" ref_description="SGN-U332510        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gtttgtgtgtttactggttttgattttgaacccttcagttttgttttaataatgagtttttgtttcccggtgtctacccataattttctgtgtagagatttccctgatttacatttaatagtgtatcaagttgctacacaaaattgtgataaatagatcttttcttttttttaatgatttgggttgttacactttgttcatttgtgtaattggttttgtactttctgtaattatgggtaatgaaaaatcaaggttcttggaagtgttttgcaattttttttaaaaaaaaaatccttgaaaaaaatgcagtcaatggtaaattatgattcccaaatgatatctatgtcattctttgaacaatggaatctattgaggtaatggtttgatgtaaaatatgatgttagaagttttagcgggttagaattgtttaatcttgtttagtagatgcgtactgtgcatgttcgatgatggatgtgattgtttttatataagcaactgttaatagtattgtcgtattctgattttcgatggtgtaagaaactttaactcacaggcttctgatttgttgtcttttaaagttttaattgcaagagcttgtgaaagtgtataaggtttactatttgtttactagagctcttgaaccagaagcttaatattggaaagagatggaaaggtttttaagcatttatgagttctgaatttgattttcttcattggtacagctagtcgttgaaatgcttgtagatgtgatatatcactcaaaatcctaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="61895" stop="60523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61595" g_stop="60823" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U332510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61595" e_stop="60823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</genome_strand>
        <mrna_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336817" ref_strand="+" ref_description="SGN-U336817        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="+" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="71402" stop="72293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71702" g_stop="71993" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="+" ref_id="SGN-U336817" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71702" e_stop="71993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323373" ref_strand="+" ref_description="SGN-U323373        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr5:22867811-22869955 REVERSE | Aliases: None(evalue: 1e-25, score=115) genbank/nr: unknown(evalue: 1e-23, score=115)">
      <seq>gaatgattactgattagccttttagaagatcggaaaaccctaaaaatggctgatcgagctctctgttcactctcatttgactgataaatctgcggatgcgaggtaatctcactatatatttgtaatcagtactgttttctgcttttaaatccttcaaaaaatggatgatttgatgcaaaaatcactgaaaacccccgattttttagctgtatttactaacagtacaagtgaaggaattgatagaattagctatttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcttgaaaaagttgagttatcaaacgagcatttgacgagttgcttgttctcaagactagagaaactggtattggatggttgtacttttggaactatgactatgcttgatattgtttcaacgtctctggtttatgtgtctctactgaactatgtcaataacgtagaagcttacaacaattgtatcgtcaagatttcttgcccgaatctcaaggtcttgaaatatggtgctccattggcaaaggatatgatcatagagaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgttggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaagaatgcacaagtattagaagaactgataattgtttgggatagctgtagtggcatatcagaagaggcaatagaggaggtttccaactttcctagagcttcttcacatgttgttgtctcatttcttaatttcaaacccaaatcaagatctcgttaccgggacaattcagtttaaaagaggttctgattgtgagacgctatgttgcttggacttggactctccaaaaatgttgtactacttttggaaggtccgacatacatttgaagtgtccaagtaacataggttagaagtaccctttttgggaactagtgcatgagcaagcacatgaagccttaacgaatttctactactgtttcgccttttcaaagagcactggacagacttcaatgaagcatatttgactccggacaaagaagcattcaacttgtcgacagatgttacatgcgtatacaagatttaggaagtatcagtcatctctttctgcactatatggttgttgttgacctctgaaacgtgttttattatgttttcggactcgcgtaggtcatgccatacacagttaaagaggcatatgaatgctttaatcgtgaggaagatctggatgtccctgcaagtattgatgtttttggtgtatttcaactccaaattactcctcccaactataagctagatgtttgtgtaacttatttaggttgatgaacaacttaagtcatgtaaattacttgatctcttttgtaacttttgcatcttcatgatgtttttctcaataaaacttacttatttcatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-7HRN7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0004D19.2" temp_strand="-" temp_description="C09SLe0004D19.2  EF576815.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576815.1| upload_account_name:spain (1 - 83229)">
        <position start="75515" stop="72696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75216" g_stop="72991" g_length="2226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2226" r_length="2226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.2" gen_strand="-" ref_id="SGN-U323373" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75216" e_stop="72991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGAT</genome_strand>
        <mrna_strand>GAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGAGGCATATGAATGCTTTAATCGTGAGGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17872" PGL_stop="13128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17872" e_stop="17756"/>
            <exon e_start="15716" e_stop="14601"/>
            <exon e_start="13425" e_stop="13128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="17872" e_stop="17756" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17755" i_stop="15717" i_length="2039"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="15716" e_stop="14601" e_length="1116"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14600" i_stop="13426" i_length="1175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13425" e_stop="13128" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17872" stop="17756"/>
              <exon start="15716" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15047" stop="14601"/>
              <exon start="13425" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317351" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTCTTCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC : ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG : GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</gDNA_template>
            <first_frame> S  V  F  A  H  *  K  K  K  T  Y  T  A  L  L  *  L  R  *  K  R  P  K  L  S  S  C  S  H  G  W  K  K  K  K  K  N  E  V  :  I  G  C  D  S  S  K  *  W  C  C  F  K  *  G  A  *  R  I  *  *  A  K  L  I  V  L  C  A  G  *  Y  S  R  T  D  S  Q  P  V  K  L  E  G  K  Y  P  C  F  C  C  L  Q  A  M  A  C  C  C  H  F  C  K  S  C  E  *  T  T  L  A  Y  V  F  P  E  I  R  *  L  G  *  I  L  *  P  F  S  E  A  N  L  F  C  *  V  T  R  V  T  W  L  K  A  L  L  C  K  G  W  L  V  A  A  I  Q  A  Q  N  F  A  C  V  L  L  Q  S  L  Y  E  G  G  D  Q  F  A  R  T  R  I  N  I  P  D  S  C  F  F  G  S  P  N  I  P  *  L  Y  C  F  H  S  *  A  C  Q  P  H  F  G  C  N  *  H  M  *  T  R  S  N  *  M  D  N  C  Q  L  P  K  P  F  A  I  C  *  Q  H  L  E  *  V  S  F  L  Q  W  S  L  L  L  S  E  S  Y  W  L  V  G  S  L  *  S  R  R  T  Y  L  A  C  S  C  G  S  T  S  E  M  P  R  E  L  F  R  Q  K  L  V  E  R  K  I  H  G  R  A  R  W  R  Y  L  C  D  I  Y  L  L  Y  C  K  P  R  G  I  *  V  G  P  N  *  *  N  L  G  G  D  A  N  F  R  W  F  D  S  F  C  *  F  P  F  I  P  S  K  D  R  H  S  W  C  D  E  K  *  Y  L  F  L  *  G  S  F  L  W  K  A  L  H  I  L  F  S  R  *  K  Q  I  L  P  A  K  A  V  L  R  L  G  R  T  R  S  F  *  E  H  L  D  *  C  T  G  G  P  F  S  L  Y  L  K  R  F  V  T  E  :  G  L  K  Y  K  V  P  L  Q  T  A  S  S  R  A  A  D  V  V  K  *  P  P  C  C  G  K  S  E  S  E  P  M  V  Q  M  Y  Q  *  M  L  S  K  D  L  E  G  M  I  K  D  R  V  L  I  M  S  S  L  N  L  *  Y  F  I  S  C  H  *  T  I  S  F  S  V  D  N  I  L  G  *  W  C  S  *  I  C  *  S  L  I  *  A  D  *  I  R  A  L  </first_frame>
            <second_frame>  L  S  S  H  T  E  K  K  K  H  I  L  L  C  F  N  L  D  R  N  A  Q  S  *  V  L  A  A  M  A  G  R  K  R  R  K  M  K  S :   L  A  V  T  A  P  N  N  G  A  A  S  S  E  E  R  E  E  S  D  E  Q  N  S  L  F  C  V  P  V  D  I  L  E  Q  I  L  S  R  L  N  L  K  E  N  I  L  A  S  A  V  C  K  Q  W  L  A  A  A  I  S  V  R  V  A  N  K  P  P  W  L  M  F  F  P  K  F  G  D  L  V  E  F  Y  D  P  S  V  R  Q  T  Y  S  V  E  L  P  E  L  R  G  S  R  L  C  Y  A  K  D  G  W  L  L  L  Y  K  P  R  T  L  R  V  F  F  F  N  P  Y  T  K  E  V  I  N  L  P  G  L  E  L  T  Y  Q  I  V  A  F  S  A  A  P  T  S  P  D  C  I  V  F  T  V  K  H  V  S  P  T  L  V  A  I  S  T  C  K  P  G  A  T  E  W  T  T  A  N  Y  Q  N  R  L  P  F  V  S  S  I  W  N  K  L  V  F  C  N  G  L  F  Y  C  L  S  L  T  G  W  L  G  V  Y  D  P  E  E  H  T  W  L  V  R  V  V  P  P  P  R  C  P  E  N  F  F  V  K  N  W  W  K  G  K  F  M  A  E  H  D  G  D  I  Y  V  I  Y  T  C  S  T  A  N  P  V  V  Y  K  L  D  Q  I  N  K  I  W  V  E  M  Q  T  L  G  G  L  T  L  F  A  S  F  L  S  S  Q  A  R  T  D  I  L  G  V  M  R  N  S  I  Y  F  S  K  V  R  F  Y  G  R  R  C  I  S  Y  S  L  D  K  N  R  Y  Y  P  R  K  Q  C  Y  D  W  G  E  Q  D  P  F  E  S  I  W  I  D  A  P  A  D  L  S  A  F  T  *  K  D  L  *  Q  R :   A  S  N  T  R  S  L  F  K  R  L  H  R  E  L  Q  M  *  S  S  S  H  L  A  A  E  K  V  K  A  N  R  W  F  R  C  I  S  K  C  C  Q  K  T  W  K  A  *  *  R  T  G  F  *  S  C  H  L  S  I  Y  S  T  L  *  V  V  I  K  Q  F  P  S  V  *  I  T  F  *  G  N  G  V  V  E  S  V  E  V  *  F  K  L  T  K  *  E  L  * </second_frame>
            <third_frame>   C  L  R  T  L  K  K  K  N  I  Y  C  F  A  L  T  *  I  E  T  P  K  A  E  F  L  Q  P  W  L  E  E  K  E  E  K  *  S   : H  W  L  *  Q  L  Q  I  M  V  L  L  Q  V  R  S  V  K  N  L  M  S  K  T  H  C  F  V  C  R  L  I  F  *  N  R  F  S  A  G  *  T  *  R  K  I  S  L  L  L  L  F  A  S  N  G  L  L  L  P  F  L  *  E  L  R  I  N  H  L  G  L  C  F  S  R  N  S  V  T  W  L  N  S  M  T  L  Q  *  G  K  L  I  L  L  S  Y  Q  S  Y  V  A  Q  G  F  V  M  Q  R  M  A  G  C  C  Y  T  S  P  E  L  C  V  C  S  S  S  I  L  I  R  R  R  *  S  I  C  Q  D  *  N  *  H  T  R  *  L  L  F  R  Q  P  Q  H  P  L  T  V  L  F  S  Q  L  S  M  S  A  P  L  W  L  Q  L  A  H  V  N  Q  E  Q  L  N  G  Q  L  P  I  T  K  T  V  C  H  L  L  A  A  F  G  I  S  *  F  S  A  M  V  S  F  I  V  *  V  L  L  A  G  W  E  S  M  I  Q  K  N  I  L  G  L  F  V  W  F  H  L  R  D  A  P  R  T  F  S  S  K  I  G  G  K  E  N  S  W  Q  S  T  M  E  I  S  M  *  Y  I  L  A  L  L  Q  T  P  W  Y  I  S  W  T  K  L  I  K  F  G  W  R  C  K  L  *  V  V  *  L  F  L  L  V  S  F  H  P  K  Q  G  Q  T  F  L  V  *  *  E  I  V  F  I  S  L  R  F  V  F  M  E  G  A  A  Y  P  I  L  S  I  K  T  D  T  T  R  E  S  S  V  T  I  G  E  N  K  I  L  L  R  A  F  G  L  M  H  R  R  T  F  Q  P  L  P  E  K  I  C  D  R   : G  P  Q  I  Q  G  P  S  S  N  G  F  I  E  S  C  R  C  S  Q  V  A  T  L  L  R  K  K  *  K  R  T  D  G  S  D  V  S  V  N  V  V  K  R  P  G  R  H  D  K  G  Q  G  S  N  H  V  I  S  Q  F  I  V  L  Y  K  L  S  L  N  N  F  L  Q  C  R  *  H  F  R  V  M  V  *  L  N  L  L  K  F  N  L  S  *  L  N  K  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17799" stop="17756"/>
                    <exon start="15716" stop="14618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAAMAGRKRRKMKSLAVTAPNNGAASSEEREESDEQNSLFCVPVDILEQILSRLNLKENILASAVCKQWLAAAISVRVANKPPWLMFFPKFGDLVEFYDPSVRQTYSVELPELRGSRLCYAKDGWLLLYKPRTLRVFFFNPYTKEVINLPGLELTYQIVAFSAAPTSPDCIVFTVKHVSPTLVAISTCKPGATEWTTANYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPEEHTWLVRVVPPPRCPENFFVKNWWKGKFMAEHDGDIYVIYTCSTANPVVYKLDQINKIWVEMQTLGGLTLFASFLSSQARTDILGVMRNSIYFSKVRFYGRRCISYSLDKNRYYPRKQCYDWGEQDPFESIWIDAPADLSAFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22974" PGL_stop="22332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22974" e_stop="22332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22974" e_stop="22332" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22974" stop="22332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</gDNA_template>
            <first_frame> L  V  S  R  R  R  R  S  L  S  P  L  F  D  P  Q  L  V  E  A  F  E  K  E  M  S  A  E  E  E  Q  I  K  K  M  V  S  A  T  P  I  S  R  K  A  R  H  S  Q  E  A  E  T  M  L  E  L  F  E  K  K  C  P  P  E  G  E  N  A  V  V  I  Y  T  T  T  L  R  G  I  R  K  T  F  E  D  C  N  T  A  R  A  I  L  E  S  N  D  V  R  V  I  E  R  D  I  S  M  D  S  G  Y  K  E  E  L  R  G  L  M  G  T  K  E  V  K  V  P  L  V  F  V  K  G  R  L  I  G  G  A  D  E  M  L  K  L  E  E  E  G  K  L  G  I  L  L  D  G  I  P  R  A  A  A  T  C  D  G  C  A  G  I  R  F  V  M  C  M  D  C  N  G  S  R  K  L  L  A  K  D  G  K  S  T  V  K  C  G  D  C  N  E  N  G  L  I  Q  C  P  I  C  C  *  L  </first_frame>
            <second_frame>  W  F  R  G  G  E  G  V  *  V  R  C  L  I  H  S  S  W  K  L  S  R  K  R  C  L  Q  K  K  N  R  S  R  K  W  C  L  L  R  Q  F  L  E  K  L  G  I  H  K  K  Q  R  Q  C  L  S  Y  L  R  K  N  A  H  Q  K  V  K  M  Q  L  *  S  I  Q  L  H  *  G  V  L  E  R  H  L  R  I  V  I  L  L  G  L  Y  S  N  R  M  M  F  V  *  L  N  V  I  Y  R  W  I  R  G  I  R  K  N  *  E  D  *  W  G  Q  K  R  *  K  F  L  *  C  L  *  K  G  G  *  L  V  E  L  M  K  C  *  S  W  K  R  R  V  N  W  E  F  Y  S  T  G  S  R  G  Q  L  P  R  V  M  A  A  R  G  S  G  S  *  C  V  W  T  A  M  G  V  E  N  C  W  P  R  M  E  R  V  L  *  N  V  E  T  A  M  R  M  V  *  F  S  V  Q  F  V  V  N  Y </second_frame>
            <third_frame>   G  F  A  E  E  K  E  F  K  S  V  V  *  S  T  A  R  G  S  F  R  E  R  D  V  C  R  R  R  T  D  Q  E  N  G  V  C  Y  A  N  F  S  K  S  *  A  F  T  R  S  R  D  N  A  *  V  I  *  E  K  M  P  T  R  R  *  K  C  S  C  N  L  Y  N  Y  I  E  G  Y  *  K  D  I  *  G  L  *  Y  C  *  G  Y  T  R  I  E  *  C  S  C  D  *  T  *  Y  I  D  G  F  G  V  *  G  R  T  K  R  T  N  G  D  K  R  G  E  S  S  F  S  V  C  K  R  E  V  N  W  W  S  *  *  N  V  E  V  G  R  G  G  *  I  G  N  F  T  R  R  D  P  E  G  S  C  H  V  *  W  L  R  G  D  P  V  R  D  V  Y  G  L  Q  W  E  *  K  I  V  G  Q  G  W  K  E  Y  C  E  M  W  R  L  Q  *  E  W  F  D  S  V  S  N  L  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22974" stop="22336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRRRRSLSPLFDPQLVEAFEKEMSAEEEQIKKMVSATPISRKARHSQEAETMLELFEKKCPPEGENAVVIYTTTLRGIRKTFEDCNTARAILESNDVRVIERDISMDSGYKEELRGLMGTKEVKVPLVFVKGRLIGGADEMLKLEEEGKLGILLDGIPRAAATCDGCAGIRFVMCMDCNGSRKLLAKDGKSTVKCGDCNENGLIQCPICC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31793" PGL_stop="28713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31793" e_stop="31628"/>
            <exon e_start="30674" e_stop="30493"/>
            <exon e_start="30162" e_stop="30084"/>
            <exon e_start="29891" e_stop="29808"/>
            <exon e_start="29298" e_stop="28713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.427" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31793" e_stop="31628" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.427" acc_prob="0.859">
            <gDNA_intron_boundary i_start="31627" i_stop="30675" i_length="953"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30674" e_stop="30493" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.817">
            <gDNA_intron_boundary i_start="30492" i_stop="30163" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30162" e_stop="30084" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30083" i_stop="29892" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29891" e_stop="29808" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29807" i_stop="29299" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29298" e_stop="28713" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31793" stop="31628"/>
              <exon start="30674" stop="30493"/>
              <exon start="30162" stop="30084"/>
              <exon start="29891" stop="29808"/>
              <exon start="29298" stop="28713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG : GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA : CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG : GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG : CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</gDNA_template>
            <first_frame> V  F  G  A  L  N  Q  N  S  K  K  F  Y  S  S  V  H  F  F  H  P  H  R  A  A  T  V  G  D  Q  Q  N  S  G  A  A  T  V  G  D  H  Q  G  S  G  V  E  T  V  G  N  Q  K  G  S   : G  A  V  L  A  A  I  F  K  C  S  Y  *  I  Y  T  I  I  M  D  A  P  N  E  L  S  Y  K  P  P  S  E  F  E  E  V  K  K  D  S  L  V  N  L  N  I  S  D  S  T  E  L  W  L  I  Q  W  P  F  N  Q  :  H  P  G  L  D  G  Q  E  V  S  L  K  L  H  H  D  G  H  I  G  S  F  E  D  S  S   : G  K  S  Y  E  V  V  S  C  R  A  Q  D  P  D  A  L  V  F  L  S  S  D  S  E  P  K  I   : A  G  K  I  S  R  R  V  S  L  V  H  Y  P  E  P  S  E  L  K  Q  N  S  I  N  L  K  Q  M  M  A  Q  R  S  S  G  T  T  L  T  N  S  S  R  R  F  A  T  P  S  Q  S  T  R  T  R  S  I  M  R  S  E  S  S  S  K  S  T  K  R  K  H  S  D  G  G  P  A  K  S  N  N  Q  S  V  Q  D  S  G  K  S  G  R  S  A  L  T  S  S  G  S  F  D  H  S  Q  D  Q  K  S  K  K  K  R  K  I  D  G  *  S  A  S  S  *  V  F  *  I  E  F  F  L  V  K  E  S  L  S  S  C  A  S  T  N  *  A  L  *  P  F  S  H  E  L  E  H  V  L  I  F  S  L  I  L  L  L  E  Q  V  C  E  V  F  A  P  *  L  V  C  L  V  N  P  P  N  D  G  T  N  I  *  S  K  Y  Q   </first_frame>
            <second_frame>  Y  L  V  P  *  I  K  I  Q  K  N  S  I  H  R  F  T  F  F  T  L  T  A  Q  L  P  S  A  T  N  R  T  A  A  Q  P  P  S  A  T  I  R  A  A  A  *  K  P  S  A  T  R  R  A  A  :  E  L  F  W  L  P  F  S  S  A  L  I  E  Y  I  P  S  L  W  M  L  R  M  N  *  A  T  N  H  H  Q  N  L  R  R  S  K  R  I  H  L  S  I  L  T  F  Q  T  Q  L  S  S  G  L  Y  S  G  P  L  I  N :   I  Q  V  L  M  G  K  K  F  H  *  S  S  I  M  M  G  I  S  A  V  L  R  I  H  L  :  V  N  H  M  R  W  S  V  V  E  R  R  T  P  M  R  W  S  F  Y  H  L  I  L  S  Q  K  L  :  L  A  K  F  R  G  V  F  P  L  S  I  I  R  N  Q  V  S  L  N  R  T  A  *  T  *  S  R  *  W  L  R  D  R  L  V  L  H  *  P  I  H  L  V  A  L  Q  L  L  V  K  V  L  G  H  G  V  L  C  D  R  R  V  H  P  N  L  P  R  E  N  T  V  M  A  A  L  Q  N  P  I  T  N  L  F  K  I  Q  A  K  V  V  V  V  H  *  P  L  Q  D  P  S  I  T  L  K  I  K  N  Q  R  R  S  G  K  L  M  V  E  V  L  P  L  K  C  S  E  S  N  S  F  W  L  K  N  L  F  L  V  A  L  V  Q  I  E  R  F  N  H  S  A  M  N  S  N  T  S  L  F  S  L  L  Y  Y  F  *  N  K  C  V  R  F  L  R  H  S  L  C  A  L  L  I  P  P  M  M  G  P  I  F  N  L  S  I  K  </second_frame>
            <third_frame>   I  W  C  P  K  S  K  F  K  K  I  L  F  I  G  S  L  F  S  P  S  P  R  S  Y  R  R  R  P  T  E  Q  R  R  S  H  R  R  R  P  S  G  Q  R  R  R  N  R  R  Q  P  E  G  Q  R :   S  C  F  G  C  H  F  Q  V  L  L  L  N  I  Y  H  H  Y  G  C  S  E  *  T  E  L  Q  T  T  I  R  I  *  G  G  Q  K  G  F  T  C  Q  S  *  H  F  R  L  N  *  A  L  A  Y  T  V  A  L  *  S   : T  S  R  S  *  W  A  R  S  F  I  E  A  P  S  *  W  A  Y  R  Q  F  *  G  F  I  W :   *  I  I  *  G  G  Q  L  *  S  A  G  P  R  C  V  G  L  S  I  I  *  F  *  A  K  N  C :   W  Q  N  F  A  A  C  F  P  C  P  L  S  G  T  K  *  A  *  T  E  Q  H  K  L  E  A  D  D  G  S  E  I  V  W  Y  Y  I  D  Q  F  I  S  S  L  C  N  S  *  S  K  Y  *  D  T  E  Y  Y  A  I  G  E  F  I  Q  I  Y  Q  E  K  T  Q  *  W  R  P  C  K  I  Q  *  P  I  C  S  R  F  R  Q  K  W  S  *  C  I  N  L  F  R  I  L  R  S  L  S  R  S  K  I  K  E  E  A  E  N  *  W  L  K  C  F  L  L  S  V  L  N  R  I  L  F  G  *  R  I  S  F  *  L  R  *  Y  K  L  S  A  L  T  I  Q  P  *  T  R  T  R  P  Y  F  L  S  Y  I  T  S  R  T  S  V  *  G  F  C  A  I  A  C  V  P  C  *  S  P  Q  *  W  D  Q  Y  L  I  *  V  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30636" stop="30493"/>
                    <exon start="30162" stop="30084"/>
                    <exon start="29891" stop="29808"/>
                    <exon start="29298" stop="28943"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTIIMDAPNELSYKPPSEFEEVKKDSLVNLNISDSTELWLIQWPFNQHPGLDGQEVSLKLHHDGHIGSFEDSSGKSYEVVSCRAQDPDALVFLSSDSEPKIAGKISRRVSLVHYPEPSELKQNSINLKQMMAQRSSGTTLTNSSRRFATPSQSTRTRSIMRSESSSKSTKRKHSDGGPAKSNNQSVQDSGKSGRSALTSSGSFDHSQDQKSKKKRKIDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31791" stop="31628"/>
                    <exon start="30674" stop="30605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWCPKSKFKKILFIGSLFSPSPRSYRRRPTEQRRSHRRRPSGQRRRNRRQPEGQRSCFGCHFQVLLLNIYHHYGCSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29981" e_stop="29245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="29981" e_stop="29245" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29981" stop="29245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGC</gDNA_template>
            <first_frame> A  P  L  I  F  I  A  G  I  L  R  *  *  K  I  L  L  I  S  *  R  L  A  Q  R  L  L  L  *  Q  V  N  H  M  R  W  S  V  V  E  R  R  T  P  M  R  W  S  F  Y  H  L  I  L  S  Q  K  L  V  T  L  S  S  F  A  F  Y  C  T  L  V  C  L  F  T  H  D  L  D  T  Q  N  V  Q  Y  C  N  I  L  L  G  M  S  F  L  S  H  I  L  *  C  W  C  Q  V  K  A  I  L  L  T  V  E  T  S  C  F  I  I  L  L  Y  Q  P  L  C  C  V  P  T  H  C  C  N  M  C  T  E  A  N  V  T  Q  Y  L  *  *  F  Q  F  N  L  L  C  P  H  M  T  C  S  F  C  L  H  I  E  I  L  L  L  S  L  S  *  A  E  L  A  H  N  P  T  T  N  A  L  L  F  I  F  L  V  E  L  I  V  I  P  C  E  P  L  Y  D  P  N  A  A  N  F  P  F  K  H  K  I  K  A  F  E  Q  S  F  A  C  F  G  S  W  Q  N  F  A  A  C  F  P  C  P  L  S  G  T  K  *   </first_frame>
            <second_frame>  H  L  *  F  S  *  Q  A  F  *  D  N  E  R  F  F  *  F  L  N  V  L  L  N  D  C  F  C  N  R  *  I  I  *  G  G  Q  L  *  S  A  G  P  R  C  V  G  L  S  I  I  *  F  *  A  K  N  W  *  L  L  V  P  L  H  F  T  V  H  L  S  A  Y  S  L  M  I  S  T  L  K  T  C  N  T  A  I  S  F  W  V  C  H  F  Y  L  I  F  C  D  V  G  V  K  S  K  L  F  C  *  Q  L  R  R  R  A  S  *  F  C  C  T  N  H  Y  V  V  Y  P  R  T  V  V  T  C  V  L  K  L  M  *  L  N  I  F  D  D  F  N  L  I  Y  Y  V  H  I  *  H  A  R  F  V  C  I  L  K  F  Y  C  S  L  L  V  E  R  N  L  H  I  I  Q  L  L  M  L  F  C  L  Y  F  W  *  N  L  L  L  F  L  V  N  L  Y  M  I  Q  M  L  L  I  F  R  S  S  T  K  L  R  R  L  S  R  V  L  H  V  L  A  A  G  K  I  S  R  R  V  S  L  V  H  Y  P  E  P  S  E  </second_frame>
            <third_frame>   T  S  N  F  H  S  R  H  F  K  I  M  K  D  S  F  N  F  L  T  S  C  S  T  I  A  F  V  T  G  K  S  Y  E  V  V  S  C  R  A  Q  D  P  D  A  L  V  F  L  S  S  D  S  E  P  K  I  G  N  S  *  F  L  C  I  L  L  Y  T  C  L  L  I  H  S  *  S  R  H  S  K  R  A  I  L  Q  Y  P  F  G  Y  V  I  F  I  S  Y  F  V  M  L  V  S  S  Q  S  Y  S  V  D  S  *  D  V  V  L  H  N  F  V  V  P  T  I  M  L  C  T  H  A  L  L  *  H  V  Y  *  S  *  C  D  S  I  S  L  M  I  S  I  *  S  T  M  S  T  Y  D  M  L  V  L  F  A  Y  *  N  F  I  A  L  S  *  L  S  G  T  C  T  *  S  N  Y  *  C  S  S  V  Y  I  F  G  R  T  Y  C  Y  S  L  *  T  S  I  *  S  K  C  C  *  F  S  V  Q  A  Q  N  *  G  V  *  A  E  F  C  M  F  W  Q  L  A  K  F  R  G  V  F  P  L  S  I  I  R  N  Q  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29894" stop="29682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVNHMRWSVVERRTPMRWSFYHLILSQKLVTLSSFAFYCTLVCLFTHDLDTQNVQYCNILLGMSFLSHIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29459" stop="29247"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AELAHNPTTNALLFIFLVELIVIPCEPLYDPNAANFPFKHKIKAFEQSFACFGSWQNFAACFPCPLSGTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37491" PGL_stop="38883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37491" e_stop="38883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="37491" e_stop="38883" e_length="1393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37491" stop="38883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGACCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATCTAGTGTCTTGTATTTTTTTTGGAGAATCACGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGATTCGGCAGTACAGAGTTTAAGAA</gDNA_template>
            <first_frame> T  F  I  F  F  L  S  L  R  F  S  S  S  F  S  L  *  N  A  S  S  *  F  G  N  S  S  F  G  M  C  R  R  R  E  *  P  E  S  C  M  *  D  F  G  *  Q  *  R  R  R  R  K  T  C  E  R  R  F  G  *  *  G  E  A  I  G  A  S  A  *  F  P  P  G  I  V  L  A  F  E  R  C  *  V  R  L  V  *  S  E  C  L  F  G  P  E  T  V  Y  E  R  Y  R  S  *  S  R  F  E  F  E  F  A  E  I  F  V  D  F  E  K  *  G  F  D  Y  R  I  S  E  D  S  E  D  *  F  H  R  F  E  T  A  N  L  *  T  G  E  H  *  A  F  P  G  E  K  V  *  I  Y  V  E  I  G  F  G  Y  G  T  V  V  T  E  G  I  L  Y  G  K  S  K  I  E  T  *  I  T  K  P  T  I  I  G  E  I  K  K  M  *  K  K  F  T  R  E  I  T  K  Q  Q  W  R  E  T  Q  I  R  I  L  F  T  I  T  I  N  I  P  I  *  S  E  *  Q  K  T  V  K  V  Q  Y  *  *  N  A  R  F  K  V  D  D  G  A  D  K  S  A  E  K  E  Q  K  C  D  R  R  E  N  S  R  R  S  S  G  *  R  *  T  G  W  V  R  R  N  E  T  V  L  L  R  P  A  I  G  I  M  G  R  R  *  N  Q  R  S  C  L  S  G  S  Q  *  K  W  K  K  Q  K  A  K  H  K  K  S  *  W  *  L  E  F  W  Q  E  N  L  T  A  F  V  H  I  F  G  *  N  F  E  V  K  K  K  *  Y  V  L  L  L  E  F  I  F  L  L  *  K  C  F  F  F  N  F  S  I  I  *  *  *  R  I  G  F  Y  I  Y  I  Y  I  L  *  I  Y  F  G  F  W  S  E  G  L  *  I  F  T  I  F  Y  *  *  F  R  I  L  *  *  K  L  F  G  N  N  V  F  L  S  F  I  I  *  C  L  V  F  F  L  E  N  H  E  I  S  G  I  *  N  V  I  *  I  E  L  I  D  L  H  R  F  T  D  S  A  V  Q  S  L  R  </first_frame>
            <second_frame>  H  L  Y  F  F  S  L  *  D  F  L  L  L  S  L  S  R  M  P  Q  V  D  L  E  T  L  V  S  A  C  A  G  G  G  S  D  R  K  V  A  C  E  T  L  A  D  S  D  G  D  G  E  K  R  V  K  D  D  L  D  D  E  E  K  Q  S  E  H  P  P  D  F  P  P  E  S  F  W  L  S  K  D  A  E  F  D  W  F  D  R  N  A  F  L  D  R  K  Q  S  T  K  G  I  G  H  N  P  G  S  N  S  S  S  Q  R  F  S  S  T  L  K  S  K  A  S  I  I  G  F  P  K  T  Q  K  T  S  F  I  D  S  K  R  R  T  C  K  P  A  N  I  R  L  F  P  A  K  R  S  E  S  T  L  K  S  A  S  V  T  E  P  S  S  P  K  V  S  C  M  G  R  V  R  S  K  R  R  S  R  S  R  R  S  S  E  K  S  K  K  C  E  K  N  S  L  E  R  S  R  S  N  N  G  E  K  R  K  S  G  F  C  S  R  L  L  S  I  F  R  S  N  R  S  N  K  K  P  S  R  S  S  T  D  K  T  L  G  S  K  S  T  T  E  P  I  N  P  L  R  K  S  K  S  V  T  V  G  K  T  R  G  G  A  P  V  S  V  E  P  V  G  L  G  G  M  K  R  F  S  S  G  R  R  S  E  S  W  G  G  D  E  I  N  A  V  V  *  V  G  P  N  E  S  G  K  N  K  K  Q  S  T  K  S  L  D  G  S  W  N  F  G  R  K  I  *  R  P  L  F  T  Y  S  V  K  I  S  R  *  K  K  N  D  T  Y  F  F  W  S  L  F  F  F  Y  K  N  V  F  F  L  T  F  Q  *  Y  N  D  N  E  *  V  F  I  Y  I  Y  I  Y  C  K  Y  I  L  V  F  G  V  K  V  C  K  F  L  L  F  S  I  S  S  L  E  Y  Y  N  E  N  Y  L  E  I  M  F  F  C  L  L  L  S  S  V  L  Y  F  F  W  R  I  T  R  F  Q  V  Y  K  M  *  Y  K  L  N  *  *  I  Y  I  D  L  L  I  R  Q  Y  R  V  *  E </second_frame>
            <third_frame>   I  Y  I  F  S  L  S  K  I  F  F  F  F  L  S  L  E  C  L  K  L  I  W  K  L  *  F  R  H  V  P  A  A  G  V  T  G  K  L  H  V  R  L  W  L  T  V  T  A  T  A  K  N  V  *  K  T  I  W  M  M  R  R  S  N  R  S  I  R  L  I  S  P  R  N  R  S  G  F  R  K  M  L  S  S  I  G  L  I  G  M  P  F  W  T  G  N  S  L  R  K  V  S  V  I  I  Q  V  R  I  R  V  R  R  D  F  R  R  L  *  K  V  R  L  R  L  S  D  F  R  R  L  R  R  L  V  S  S  I  R  N  G  E  L  V  N  R  R  T  L  G  F  S  R  R  K  G  L  N  L  R  *  N  R  L  R  L  R  N  R  R  H  R  R  Y  L  V  W  E  E  *  D  R  N  V  D  H  E  A  D  D  H  R  R  N  Q  K  N  V  K  K  I  H  S  R  D  H  E  A  T  M  E  R  N  A  N  P  D  S  V  H  D  Y  Y  Q  Y  S  D  L  I  G  V  T  K  N  R  Q  G  P  V  L  I  K  R  *  V  Q  S  R  R  R  S  R  *  I  R  *  E  R  A  K  V  *  P  *  G  K  L  A  E  E  L  R  L  A  L  N  R  L  G  *  E  E  *  N  G  S  P  P  A  G  D  R  N  H  G  E  A  M  K  S  T  Q  L  F  K  W  V  P  M  K  V  E  K  T  K  S  K  A  Q  K  V  L  M  V  V  G  I  L  A  G  K  F  N  G  L  C  S  H  I  R  L  K  F  R  G  K  K  K  M  I  R  T  S  F  G  V  Y  F  S  F  I  K  M  F  F  F  *  L  F  N  N  I  M  I  T  N  R  F  L  Y  I  Y  I  Y  I  V  N  I  F  W  F  L  E  *  R  F  V  N  F  Y  Y  F  L  L  V  V  *  N  I  I  M  K  I  I  W  K  *  C  F  F  V  F  Y  Y  L  V  S  C  I  F  F  G  E  S  R  D  F  R  Y  I  K  C  N  I  N  *  I  N  R  F  T  *  I  Y  *  F  G  S  T  E  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37516" stop="38409"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFLLLSLSRMPQVDLETLVSACAGGGSDRKVACETLADSDGDGEKRVKDDLDDEEKQSEHPPDFPPESFWLSKDAEFDWFDRNAFLDRKQSTKGIGHNPGSNSSSQRFSSTLKSKASIIGFPKTQKTSFIDSKRRTCKPANIRLFPAKRSESTLKSASVTEPSSPKVSCMGRVRSKRRSRSRRSSEKSKKCEKNSLERSRSNNGEKRKSGFCSRLLSIFRSNRSNKKPSRSSTDKTLGSKSTTEPINPLRKSKSVTVGKTRGGAPVSVEPVGLGGMKRFSSGRRSESWGGDEINAVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38626" stop="38823"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFIYIYIYCKYILVFGVKVCKFLLFSISSLEYYNENYLEIMFFCLLLSSVLYFFWRITRFQVYKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45789" PGL_stop="41256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45789" e_stop="45776"/>
            <exon e_start="45670" e_stop="45574"/>
            <exon e_start="44037" e_stop="43817"/>
            <exon e_start="43713" e_stop="43607"/>
            <exon e_start="43454" e_stop="43352"/>
            <exon e_start="42559" e_stop="42380"/>
            <exon e_start="41473" e_stop="41256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.736" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45789" e_stop="45776" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.736" acc_prob="0.951">
            <gDNA_intron_boundary i_start="45775" i_stop="45671" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45670" e_stop="45574" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45573" i_stop="44038" i_length="1536"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44037" e_stop="43817" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="43816" i_stop="43714" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43713" e_stop="43607" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43606" i_stop="43455" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43454" e_stop="43352" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43351" i_stop="42560" i_length="792"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42559" e_stop="42380" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42379" i_stop="41474" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41473" e_stop="41256" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45789" stop="45776"/>
              <exon start="45670" stop="45574"/>
              <exon start="44037" stop="43817"/>
              <exon start="43713" stop="43607"/>
              <exon start="43454" stop="43352"/>
              <exon start="42559" stop="42380"/>
              <exon start="41473" stop="41256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGATATCCTCT : TTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTG : GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG : ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA : ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG : CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAG : GTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</gDNA_template>
            <first_frame> F  R  Y  P  L :   F  L  E  *  Q  W  L  M  L  V  G  F  Q  F  G  *  S  I  Y  V  *  F  F  C  S  I  Y  F  L  L  H  L  :  V  M  L  W  E  S  N  L  V  T  Q  A  Q  *  A  Q  M  V  G  E  G  *  A  Q  H  I  Q  P  A  Q  M  A  N  H  S  P  Q  L  T  *  L  A  I  I  V  L  L  T  R  I  *  S  P  *  L  C  N  I  I  I  L  K  L  L  L  W  L  I  M  A  L  M  L  G :   *  N  M  V  I  M  Q  E  V  *  L  W  M  V  K  L  T  I  L  S  K  C  I  G  I  P  L  L  N  I  Q  L  M  A  N   : N  M  Q  Q  S  F  I  *  F  I  L  L  K  I  I  L  *  Q  F  Y  Q  F  S  S  I  W  A  I  L  I  L  *  *  P  S :   F  K  T  N  *  M  S  *  Q  G  M  *  Q  H  I  K  K  H  K  C  S  L  E  *  L  I  H  M  K  *  G  N  I  L  T  N  I  T  H  T  L  V  L  *  Q  L  H  H  A  L  K  L  S  L  G  T  F  L  A  R :   *  D  Q  Y  Q  E  N  K  *  K  N  *  E  L  H  W  I  Q  H  A  R  E  M  Q  D  Q  L  N  P  *  M  E  D  K  S  K  C  M  K  P  N  P  P  L  N  Y  Q  M  E  D  K  *  I  C  Y  M  C  T  K  I  P  L  I  K  D  S  Y  E  R  K  K  K  </first_frame>
            <second_frame>  S  D  I  L   : F  F  W  N  S  N  G  *  C  W  W  D  F  S  L  G  D  Q  Y  M  C  S  S  S  A  Q  S  I  F  Y  C  I  W :   *  C  F  G  S  Q  I  W  L  H  R  P  S  R  P  K  W  L  G  K  V  K  P  N  I  F  S  L  L  K  W  Q  I  T  V  P  N  *  H  N  *  P  *  L  C  C  *  Q  E  F  K  A  L  N  Y  A  I  *  S  F  *  S  C  Y  F  G  *  *  W  L  *  C  W   : D  K  I  W  *  *  C  R  K  F  N  C  G  W  *  N  L  Q  F  *  A  N  A  L  A  F  P  F  *  T  Y  N  *  W  Q  T  :  I  C  S  R  A  S  S  S  S  F  C  S  R  *  Y  Y  S  S  F  I  N  S  L  P  F  G  P  S  *  S  S  N  D  Q   : A  S  K  Q  T  E  *  A  S  K  G  C  S  N  T  *  R  N  T  S  A  A  W  S  N  *  Y  T  *  N  K  E  T  F  S  Q  I  L  L  I  H  W  F  F  N  N  S  T  M  H  *  N  C  L  L  V  H  S  W  Q   : G  E  I  N  I  K  R  T  S  R  R  I  E  S  S  I  G  S  N  M  Q  E  K  C  K  T  N  S  T  L  K  W  K  T  N  P  N  V  *  S  P  T  H  P  L  I  I  K  W  K  T  N  K  Y  V  I  C  V  Q  K  F  P  *  *  K  T  P  T  K  E  R  K  K </second_frame>
            <third_frame>   Q  I  S  S  :  F  F  G  I  A  M  A  D  V  G  G  I  S  V  W  V  I  N  I  C  V  V  L  L  L  N  L  F  S  T  A  S   : G  D  A  L  G  V  K  F  G  Y  T  G  P  V  G  P  N  G  W  G  R  L  S  P  T  Y  S  A  C  S  N  G  K  S  Q  S  P  I  N  I  I  S  H  N  C  V  V  N  K  N  L  K  P  L  I  M  Q  Y  N  H  S  E  V  A  T  L  V  D  N  G  F  N  V  G  :  I  K  Y  G  D  N  A  G  S  L  I  V  D  G  K  T  Y  N  F  K  Q  M  H  W  H  S  P  S  E  H  T  I  D  G  K  Q :   Y  A  A  E  L  H  L  V  H  F  A  Q  D  N  T  I  A  V  L  S  I  L  F  H  L  G  H  P  D  P  L  M  T  K  :  L  Q  N  K  L  N  E  L  A  R  D  V  A  T  H  K  E  T  Q  V  Q  L  G  V  I  D  T  H  E  I  R  K  H  S  H  K  Y  Y  S  Y  T  G  S  L  T  T  P  P  C  T  E  I  V  S  W  Y  I  L  G  K  :  V  R  S  I  S  R  E  Q  V  E  E  L  R  A  P  L  D  P  T  C  K  R  N  A  R  P  T  Q  P  L  N  G  R  Q  I  Q  M  Y  E  A  Q  P  T  P  *  L  S  N  G  R  Q  I  N  M  L  Y  V  Y  K  N  S  P  N  K  R  L  L  R  K  K  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45787" stop="45776"/>
                    <exon start="45670" stop="45574"/>
                    <exon start="44037" stop="43817"/>
                    <exon start="43713" stop="43607"/>
                    <exon start="43454" stop="43352"/>
                    <exon start="42559" stop="42380"/>
                    <exon start="41473" stop="41339"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISSFFGIAMADVGGISVWVINICVVLLLNLFSTASGDALGVKFGYTGPVGPNGWGRLSPTYSACSNGKSQSPINIISHNCVVNKNLKPLIMQYNHSEVATLVDNGFNVGIKYGDNAGSLIVDGKTYNFKQMHWHSPSEHTIDGKQYAAELHLVHFAQDNTIAVLSILFHLGHPDPLMTKLQNKLNELARDVATHKETQVQLGVIDTHEIRKHSHKYYSYTGSLTTPPCTEIVSWYILGKVRSISREQVEELRAPLDPTCKRNARPTQPLNGRQIQMYEAQPTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="52374" PGL_stop="56577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52374" e_stop="52829"/>
            <exon e_start="52909" e_stop="53025"/>
            <exon e_start="53187" e_stop="53327"/>
            <exon e_start="53551" e_stop="53721"/>
            <exon e_start="54201" e_stop="54408"/>
            <exon e_start="54504" e_stop="54691"/>
            <exon e_start="55901" e_stop="55986"/>
            <exon e_start="56338" e_stop="56577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.610" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52374" e_stop="52829" e_length="456"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="52830" i_stop="52908" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52909" e_stop="53025" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.610">
            <gDNA_intron_boundary i_start="53026" i_stop="53186" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53187" e_stop="53327" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="53328" i_stop="53550" i_length="223"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53551" e_stop="53721" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53722" i_stop="54200" i_length="479"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54201" e_stop="54408" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.916" acc_prob="0.942">
            <gDNA_intron_boundary i_start="54409" i_stop="54503" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54504" e_stop="54691" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.978">
            <gDNA_intron_boundary i_start="54692" i_stop="55900" i_length="1209"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55901" e_stop="55986" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.743">
            <gDNA_intron_boundary i_start="55987" i_stop="56337" i_length="351"/>
          </intron>
          <exon e_serial="8" e_score="0.971">
            <gDNA_exon_boundary e_start="56338" e_stop="56577" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52374" stop="52829"/>
              <exon start="52909" stop="53025"/>
              <exon start="53187" stop="53327"/>
              <exon start="53551" stop="53721"/>
              <exon start="54201" stop="54408"/>
              <exon start="54504" stop="54691"/>
              <exon start="55901" stop="55986"/>
              <exon start="56338" stop="56577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG : GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG : GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG : GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG : GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG : GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAA : CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT : GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCTACTCTCT</gDNA_template>
            <first_frame> S  C  S  A  R  L  S  S  *  K  Y  K  M  P  R  T  R  A  S  A  A  A  I  K  S  E  P  E  K  P  V  E  T  E  E  H  V  D  F  E  G  D  N  E  E  E  E  E  I  E  Y  E  E  V  E  E  E  V  E  M  E  E  E  E  E  E  E  V  E  E  E  V  E  E  E  E  E  E  E  E  E  E  E  N  G  S  D  G  A  G  E  G  K  G  S  E  D  V  K  M  K  V  D  V  D  A  E  D  M  E  K  K  H  A  E  L  L  A  L  P  P  H  G  S  E  V  Y  I  G  G  I  T  H  D  I  S  E  A  D  V  R  E  F  C  E  T  I  G  E  V  T  E  :  V  R  I  M  K  G  K  D  S  T  Q  N  K  G  Y  A  F  V  T  Y  R  N  K  E  L  A  T  K  A  I  K  E  L  N  N  T  E  L  K  :  G  K  R  V  K  C  S  P  A  Q  A  K  H  K  L  F  I  G  N  V  P  R  S  W  G  E  E  D  M  R  T  A  V  T  N  V  G  P  G  V  I  T  I  E  L  V  K  :  D  P  L  N  S  G  K  N  R  G  F  A  F  I  E  Y  Y  N  H  A  C  A  E  Y  S  R  Q  E  M  S  N  S  D  F  K  L  D  D  N  A  P  T  V  S  W  A  D  P  K  N  A  E  T  A  S  S  Q  :  V  K  A  V  Y  V  K  N  L  P  Q  H  I  N  Q  D  K  L  R  E  L  F  E  H  H  G  K  I  T  K  V  V  L  P  P  A  K  P  G  Q  E  Q  S  R  Y  G  F  V  H  F  A  D  R  S  S  A  M  R  A  L  K  N  T  E  K  Y  E  I  D   : G  K  I  L  E  C  S  L  A  K  P  Q  V  D  Q  K  S  S  G  G  S  S  S  Q  K  G  A  T  L  P  I  Y  P  P  R  I  G  Y  G  M  M  G  A  P  Y  G  A  L  G  A  G  F  G  A  G  F  G  G  P  G  V  A  Q  :  P  M  V  Y  G  R  G  A  T  P  G  G  L  A  M  M  P  M  L  L  P  D  G  R  I  G  Y  V  L :   Q  Q  P  G  V  M  H  S  P  P  P  T  S  R  G  G  R  S  G  G  S  S  S  D  G  R  R  G  D  S  G  G  R  G  R  P  R  Y  N  P  Y  *  V  *  M  N  A  I  D  V  I  K  H  N  V  C  C  Q  F  D  N  I  *  L  M  Y  L  *  P  V  *  R  I  D  S  H  L  Y  S   </first_frame>
            <second_frame>  V  A  A  P  D  Y  L  P  R  N  I  R  C  R  E  Q  G  P  V  L  Q  L  L  N  L  N  P  R  N  L  L  R  L  K  S  M  L  T  L  K  V  I  M  K  K  R  K  R  L  S  M  K  R  *  K  K  R  W  K  W  K  R  K  K  K  R  R  S  K  R  R  W  K  K  K  K  R  R  R  K  R  R  K  M  E  V  M  E  L  V  K  E  R  G  Q  R  M  *  K  *  K  L  M  *  M  L  R  I  W  R  K  S  M  L  S  S  S  P  F  L  L  M  V  Q  K  C  T  *  V  V  L  L  M  I  Y  L  R  Q  M  *  G  N  F  V  R  Q  L  G  K  L  Q  R :   *  E  *  *  K  G  R  T  Q  L  R  T  K  D  M  H  L  L  P  I  E  T  R  N  W  Q  P  R  L  L  K  S  S  T  T  L  N  *  R :   E  K  G  S  N  V  L  Q  L  K  L  N  I  S  Y  S  L  V  M  F  L  D  P  G  A  R  K  I  *  G  R  L  *  Q  M  *  G  L  G  L  L  L  L  S  *  *  R :   I  L  *  I  P  V  K  I  V  D  S  L  L  *  S  I  T  I  M  H  V  Q  S  I  L  D  K  R  C  Q  I  Q  I  L  S  L  M  I  M  H  Q  L  L  A  G  Q  I  P  K  M  L  K  L  L  L  H  R :   L  R  Q  C  M  *  R  T  C  P  N  T  L  T  K  T  S  *  E  S  C  L  N  I  M  G  K  L  Q  K  *  F  F  L  Q  L  N  Q  G  K  N  R  A  D  M  A  L  F  T  L  L  I  G  Q  V  L  *  G  P  *  R  T  L  K  N  M  R  *  M  :  G  K  F  W  S  V  H  L  Q  S  L  R  *  I  K  N  L  Q  E  D  Q  A  H  K  R  E  P  L  F  Q  F  T  L  L  V  L  D  M  A  *  W  E  P  L  M  V  L  *  V  Q  V  L  V  Q  D  L  V  V  Q  V  *  P  N :   Q  W  F  M  E  E  E  L  H  L  V  V  W  Q  *  C  R  C  F  Y  L  M  E  G  L  D  M  S   : C  N  N  Q  E  L  C  I  L  L  L  Q  H  H  E  V  D  V  V  E  A  V  Q  V  T  E  G  G  V  T  V  V  D  E  G  V  P  V  T  T  H  T  R  C  K  *  T  P  L  M  L  *  S  T  M  F  A  V  S  L  T  I  F  D  *  C  I  C  S  L  F  K  E  *  T  L  I  S  T  L  </second_frame>
            <third_frame>   L  Q  R  Q  I  I  F  L  E  I  *  D  A  E  N  K  G  Q  C  C  S  Y  *  I  *  T  R  E  T  C  *  D  *  R  A  C  *  L  *  R  *  *  *  R  R  G  R  D  *  V  *  R  G  R  R  R  G  G  N  G  R  G  R  R  R  G  G  R  R  G  G  G  R  R  R  R  G  G  G  R  G  G  K  W  K  *  W  S  W  *  R  K  G  V  R  G  C  K  N  E  S  *  C  R  C  *  G  Y  G  E  K  A  C  *  A  P  R  P  S  S  S  W  F  R  S  V  H  R  W  Y  Y  S  *  Y  I  *  G  R  C  E  G  I  L  *  D  N  W  G  S  Y  R   : G  K  N  N  E  R  E  G  L  N  S  E  Q  R  I  C  I  C  Y  L  *  K  Q  G  I  G  N  Q  G  Y  *  R  A  Q  Q  H  *  T  E   : G  K  K  G  Q  M  F  S  S  S  S  *  T  *  V  I  H  W  *  C  S  *  I  L  G  R  G  R  Y  E  D  G  C  N  K  C  R  A  W  G  Y  Y  Y  *  V  S  E   : G  S  S  E  F  R  *  K  S  W  I  R  F  Y  R  V  L  Q  S  C  M  C  R  V  F  *  T  R  D  V  K  F  R  F  *  A  *  *  *  C  T  N  C  *  L  G  R  S  Q  K  C  *  N  C  F  F  T   : G  *  G  S  V  C  E  E  L  A  P  T  H  *  P  R  Q  A  K  R  V  V  *  T  S  W  E  N  Y  K  S  S  S  S  S  S  *  T  R  A  R  T  E  Q  I  W  L  C  S  L  C  *  *  V  K  C  Y  E  G  P  E  E  H  *  K  I  *  D  R  W :   E  N  S  G  V  F  T  C  K  A  S  G  R  S  K  I  F  R  R  I  K  L  T  K  G  S  H  S  S  N  L  P  S  S  Y  W  I  W  H  D  G  S  P  L  W  C  S  R  C  R  F  W  C  R  I  W  W  S  R  C  S  P   : T  N  G  L  W  K  R  S  Y  T  W  W  F  G  N  D  A  D  A  F  T  *  W  K  D  W  I  C  P  :  A  T  T  R  S  Y  A  F  S  S  S  N  I  T  R  W  T  *  W  R  Q  F  K  *  R  K  A  G  *  Q  W  W  T  R  A  S  P  L  Q  P  I  L  G  V  N  E  R  H  *  C  Y  K  A  Q  C  L  L  S  V  *  Q  Y  L  T  D  V  S  V  A  C  L  K  N  R  L  S  S  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52401" stop="52829"/>
                    <exon start="52909" stop="53025"/>
                    <exon start="53187" stop="53327"/>
                    <exon start="53551" stop="53721"/>
                    <exon start="54201" stop="54408"/>
                    <exon start="54504" stop="54691"/>
                    <exon start="55901" stop="55986"/>
                    <exon start="56338" stop="56464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYKMPRTRASAAAIKSEPEKPVETEEHVDFEGDNEEEEEIEYEEVEEEVEMEEEEEEEVEEEVEEEEEEEEEEENGSDGAGEGKGSEDVKMKVDVDAEDMEKKHAELLALPPHGSEVYIGGITHDISEADVREFCETIGEVTEVRIMKGKDSTQNKGYAFVTYRNKELATKAIKELNNTELKGKRVKCSPAQAKHKLFIGNVPRSWGEEDMRTAVTNVGPGVITIELVKDPLNSGKNRGFAFIEYYNHACAEYSRQEMSNSDFKLDDNAPTVSWADPKNAETASSQVKAVYVKNLPQHINQDKLRELFEHHGKITKVVLPPAKPGQEQSRYGFVHFADRSSAMRALKNTEKYEIDGKILECSLAKPQVDQKSSGGSSSQKGATLPIYPPRIGYGMMGAPYGALGAGFGAGFGGPGVAQPMVYGRGATPGGLAMMPMLLPDGRIGYVLQQPGVMHSPPPTSRGGRSGGSSSDGRRGDSGGRGRPRYNPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61595" PGL_stop="60823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61595" e_stop="60823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61595" e_stop="60823" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61595" stop="60823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</gDNA_template>
            <first_frame> V  C  V  F  T  G  F  D  F  E  P  F  S  F  V  L  I  M  S  F  C  F  P  V  S  T  H  N  F  L  C  R  D  F  P  D  L  H  L  I  V  Y  Q  V  A  T  Q  N  C  D  K  *  I  F  S  F  F  *  *  F  G  L  L  H  F  V  H  L  C  N  W  F  C  T  F  C  N  Y  G  *  *  K  I  K  V  L  G  S  V  L  Q  F  F  L  K  K  K  S  L  K  K  M  Q  S  M  V  N  Y  D  S  Q  M  I  S  M  S  F  F  E  Q  W  N  L  L  R  *  W  F  D  V  K  Y  D  V  R  S  F  S  G  L  E  L  F  N  L  V  *  *  M  R  T  V  H  V  R  *  W  M  *  L  F  L  Y  K  Q  L  L  I  V  L  S  Y  S  D  F  R  W  C  K  K  L  *  L  T  G  F  *  F  V  V  F  *  S  F  N  C  K  S  L  *  K  C  I  R  F  T  I  C  L  L  E  L  L  N  Q  K  L  N  I  G  K  R  W  K  G  F  *  A  F  M  S  S  E  F  D  F  L  H  W  Y  S  *  S  L  K  C  L  *  M  *  Y  I  T  Q  N  P  K   </first_frame>
            <second_frame>  F  V  C  L  L  V  L  I  L  N  P  S  V  L  F  *  *  *  V  F  V  S  R  C  L  P  I  I  F  C  V  E  I  S  L  I  Y  I  *  *  C  I  K  L  L  H  K  I  V  I  N  R  S  F  L  F  F  N  D  L  G  C  Y  T  L  F  I  C  V  I  G  F  V  L  S  V  I  M  G  N  E  K  S  R  F  L  E  V  F  C  N  F  F  *  K  K  N  P  *  K  K  C  S  Q  W  *  I  M  I  P  K  *  Y  L  C  H  S  L  N  N  G  I  Y  *  G  N  G  L  M  *  N  M  M  L  E  V  L  A  G  *  N  C  L  I  L  F  S  R  C  V  L  C  M  F  D  D  G  C  D  C  F  Y  I  S  N  C  *  *  Y  C  R  I  L  I  F  D  G  V  R  N  F  N  S  Q  A  S  D  L  L  S  F  K  V  L  I  A  R  A  C  E  S  V  *  G  L  L  F  V  Y  *  S  S  *  T  R  S  L  I  L  E  R  D  G  K  V  F  K  H  L  *  V  L  N  L  I  F  F  I  G  T  A  S  R  *  N  A  C  R  C  D  I  S  L  K  I  L  N  </second_frame>
            <third_frame>   L  C  V  Y  W  F  *  F  *  T  L  Q  F  C  F  N  N  E  F  L  F  P  G  V  Y  P  *  F  S  V  *  R  F  P  *  F  T  F  N  S  V  S  S  C  Y  T  K  L  *  *  I  D  L  F  F  F  L  M  I  W  V  V  T  L  C  S  F  V  *  L  V  L  Y  F  L  *  L  W  V  M  K  N  Q  G  S  W  K  C  F  A  I  F  F  K  K  K  I  L  E  K  N  A  V  N  G  K  L  *  F  P  N  D  I  Y  V  I  L  *  T  M  E  S  I  E  V  M  V  *  C  K  I  *  C  *  K  F  *  R  V  R  I  V  *  S  C  L  V  D  A  Y  C  A  C  S  M  M  D  V  I  V  F  I  *  A  T  V  N  S  I  V  V  F  *  F  S  M  V  *  E  T  L  T  H  R  L  L  I  C  C  L  L  K  F  *  L  Q  E  L  V  K  V  Y  K  V  Y  Y  L  F  T  R  A  L  E  P  E  A  *  Y  W  K  E  M  E  R  F  L  S  I  Y  E  F  *  I  *  F  S  S  L  V  Q  L  V  V  E  M  L  V  D  V  I  Y  H  S  K  S  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="71702" PGL_stop="71993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71702" e_stop="71993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="71702" e_stop="71993" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71702" stop="71993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  I  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  R  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  R  N  C  R  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  Y  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  D  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  Y  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  T  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  I  T  C  G  L  K  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  P  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75216" PGL_stop="72991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75216" e_stop="72991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="75216" e_stop="72991" e_length="2226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75216" stop="72991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGAT</gDNA_template>
            <first_frame> *  *  L  L  I  S  L  L  E  D  R  K  T  L  K  M  A  D  R  A  L  C  S  L  S  F  D  *  *  I  C  G  C  E  V  I  S  L  Y  I  C  N  Q  Y  C  F  L  L  L  N  P  S  K  N  G  *  F  D  A  K  I  T  E  N  P  R  F  F  S  C  I  Y  *  Q  Y  K  *  R  N  *  *  N  *  L  F  A  G  *  Y  T  A  Q  Y  T  F  I  S  V  H  L  *  C  C  S  A  K  H  F  I  E  K  M  E  L  Y  M  E  D  N  A  L  L  E  F  *  Y  *  *  L  W  L  *  K  D  *  *  A  L  G  Y  G  Y  G  *  E  I  Q  R  F  Y  Q  L  G  V  D  *  P  M  W  G  *  P  C  L  F  *  A  L  L  W  G  Y  F  W  *  K  G  Y  F  S  M  G  S  C  C  D  S  S  K  C  S  R  T  R  V  R  F  L  S  C  *  A  I  *  V  A  I  L  C  C  D  L  *  I  L  A  S  F  E  I  T  A  *  W  V  C  T  *  V  V  *  S  F  W  I  S  S  A  *  I  S  S  S  *  K  S  *  V  I  K  R  A  F  D  E  L  L  V  L  K  T  R  E  T  G  I  G  W  L  Y  F  W  N  Y  D  Y  A  *  Y  C  F  N  V  S  G  L  C  V  S  T  E  L  C  Q  *  R  R  S  L  Q  Q  L  Y  R  Q  D  F  L  P  E  S  Q  G  L  E  I  W  C  S  I  G  K  G  Y  D  H  R  E  S  L  V  Y  R  S  C  S  H  L  I  F  L  F  R  R  C  N  K  R  N  W  N  A  F  A  *  G  V  Q  E  C  R  F  Y  I  S  F  E  I  M  Q  R  F  C  C  W  F  V  *  C  I  S  W  S  K  K  L  P  G  H  V  L  *  A  Q  V  L  K  I  G  S  G  N  *  R  I  L  H  G  N  H  D  A  I  A  Q  A  F  S  *  F  R  G  S  *  F  V  F  *  *  E  L  R  L  G  *  K  L  E  V  P  *  S  *  *  K  R  F  V  P  G  V  S  S  K  V  D  S  V  G  W  F  Q  K  *  R  *  R  D  R  A  T  E  V  F  P  Q  E  C  T  S  I  R  R  T  D  N  C  L  G  *  L  *  W  H  I  R  R  G  N  R  G  G  F  Q  L  S  *  S  F  F  T  C  C  C  L  I  S  *  F  Q  T  Q  I  K  I  S  L  P  G  Q  F  S  L  K  E  V  L  I  V  R  R  Y  V  A  W  T  W  T  L  Q  K  C  C  T  T  F  G  R  S  D  I  H  L  K  C  P  S  N  I  G  *  K  Y  P  F  W  E  L  V  H  E  Q  A  H  E  A  L  T  N  F  Y  Y  C  F  A  F  S  K  S  T  G  Q  T  S  M  K  H  I  *  L  R  T  K  K  H  S  T  C  R  Q  M  L  H  A  Y  T  R  F  R  K  Y  Q  S  S  L  S  A  L  Y  G  C  C  *  P  L  K  R  V  L  L  C  F  R  T  R  V  G  H  A  I  H  S  *  R  C  I  *  M  L  *  S  *  R  R  S  G  C  P  C  K  Y  *  C  F  W  C  I  S  T  P  N  Y  S  S  Q  L  *  A  R  C  L  C  N  L  F  R  L  M  N  N  L  S  H  V  N  Y  L  I  S  F  V  T  F  A  S  S  *  C  F  S  Q  *  N  L  L  I  S  S  K  R  M  D </first_frame>
            <second_frame>  N  D  Y  *  L  A  F  *  K  I  G  K  P  *  K  W  L  I  E  L  S  V  H  S  H  L  T  D  K  S  A  D  A  R  *  S  H  Y  I  F  V  I  S  T  V  F  C  F  *  I  L  Q  K  M  D  D  L  M  Q  K  S  L  K  T  P  D  F  L  A  V  F  T  N  S  T  S  E  G  I  D  R  I  S  Y  L  P  D  D  I  L  H  N  I  L  S  Y  L  Y  I  F  D  V  V  Q  L  S  I  L  S  K  R  W  N  Y  I  W  R  T  M  P  Y  L  N  F  D  I  N  S  F  G  C  E  R  I  D  R  L  W  D  M  G  M  A  E  K  F  K  D  F  I  N  W  V  L  I  N  R  C  G  D  S  L  V  C  F  K  L  C  C  G  D  I  F  G  K  R  A  I  F  R  W  V  R  V  V  T  A  R  N  V  Q  E  L  V  L  D  F  C  P  A  E  P  F  E  L  P  Y  C  V  V  T  C  E  S  L  R  V  L  K  L  R  L  D  G  S  V  L  K  L  S  N  H  F  G  F  H  Q  L  K  F  L  H  L  E  K  V  E  L  S  N  E  H  L  T  S  C  L  F  S  R  L  E  K  L  V  L  D  G  C  T  F  G  T  M  T  M  L  D  I  V  S  T  S  L  V  Y  V  S  L  L  N  Y  V  N  N  V  E  A  Y  N  N  C  I  V  K  I  S  C  P  N  L  K  V  L  K  Y  G  A  P  L  A  K  D  M  I  I  E  N  L  L  S  I  E  V  V  H  I  L  F  F  Y  S  D  D  V  I  K  E  I  G  M  R  L  H  K  V  F  K  N  V  A  S  T  S  A  L  K  L  C  K  G  S  V  V  G  L  Y  S  V  F  H  G  V  R  N  F  P  V  T  F  Y  K  L  K  S  L  K  L  A  V  A  I  D  E  S  C  M  E  I  M  M  L  L  L  K  H  S  P  N  L  E  V  L  N  L  F  S  D  E  N  Y  G  W  D  E  N  W  K  F  H  D  P  S  E  S  V  L  C  L  E  S  H  L  K  L  I  Q  L  A  G  F  K  N  E  D  K  E  I  E  L  L  R  F  F  L  K  N  A  Q  V  L  E  E  L  I  I  V  W  D  S  C  S  G  I  S  E  E  A  I  E  E  V  S  N  F  P  R  A  S  S  H  V  V  V  S  F  L  N  F  K  P  K  S  R  S  R  Y  R  D  N  S  V  *  K  R  F  *  L  *  D  A  M  L  L  G  L  G  L  S  K  N  V  V  L  L  L  E  G  P  T  Y  I  *  S  V  Q  V  T  *  V  R  S  T  L  F  G  N  *  C  M  S  K  H  M  K  P  *  R  I  S  T  T  V  S  P  F  Q  R  A  L  D  R  L  Q  *  S  I  F  D  S  G  Q  R  S  I  Q  L  V  D  R  C  Y  M  R  I  Q  D  L  G  S  I  S  H  L  F  L  H  Y  M  V  V  V  D  L  *  N  V  F  Y  Y  V  F  G  L  A  *  V  M  P  Y  T  V  K  D  A  Y  E  C  F  N  H  E  E  D  L  D  V  P  A  S  I  D  V  F  G  V  F  Q  L  Q  I  T  P  P  N  Y  K  L  D  V  C  V  T  Y  L  G  *  *  T  T  *  V  M  *  I  T  *  S  L  L  *  L  L  H  L  H  D  V  F  L  N  K  T  Y  L  F  H  Q  R  E  W   </second_frame>
            <third_frame>   M  I  T  D  *  P  F  R  R  S  E  N  P  K  N  G  *  S  S  S  L  F  T  L  I  *  L  I  N  L  R  M  R  G  N  L  T  I  Y  L  *  S  V  L  F  S  A  F  K  S  F  K  K  W  M  I  *  C  K  N  H  *  K  P  P  I  F  *  L  Y  L  L  T  V  Q  V  K  E  L  I  E  L  A  I  C  R  M  I  Y  C  T  I  Y  F  H  I  C  T  S  L  M  L  F  S  *  A  F  Y  R  K  D  G  T  I  Y  G  G  Q  C  L  T  *  I  L  I  L  I  A  L  V  V  K  G  L  I  G  F  G  I  W  V  W  L  R  N  S  K  I  L  S  I  G  C  *  L  T  D  V  G  I  A  L  F  V  L  S  F  V  V  G  I  F  L  V  K  G  L  F  F  D  G  F  V  L  *  Q  L  E  M  F  K  N  S  C  *  I  F  V  L  L  S  H  L  S  C  H  I  V  L  *  L  V  N  P  C  E  F  *  N  Y  G  L  M  G  L  Y  L  S  C  L  I  I  L  D  F  I  S  L  N  F  F  I  L  K  K  L  S  Y  Q  T  S  I  *  R  V  A  C  S  Q  D  *  R  N  W  Y  W  M  V  V  L  L  E  L  *  L  C  L  I  L  F  Q  R  L  W  F  M  C  L  Y  *  T  M  S  I  T  *  K  L  T  T  I  V  S  S  R  F  L  A  R  I  S  R  S  *  N  M  V  L  H  W  Q  R  I  *  S  *  R  I  S  C  L  *  K  L  F  T  S  Y  F  F  I  Q  T  M  *  *  K  K  L  E  C  V  C  I  R  C  S  R  M  S  L  L  H  Q  L  *  N  Y  A  K  V  L  L  L  V  C  I  V  Y  F  M  E  *  E  T  S  R  S  R  F  I  S  S  S  P  *  N  W  Q  W  Q  L  T  N  L  A  W  K  S  *  C  Y  C  S  S  I  L  L  I  *  R  F  L  I  C  F  L  M  R  I  T  V  G  M  K  T  G  S  S  M  I  L  V  K  A  F  C  A  W  S  L  I  *  S  *  F  S  W  L  V  S  K  M  K  I  K  R  *  S  Y  *  G  F  S  S  R  M  H  K  Y  *  K  N  *  *  L  F  G  I  A  V  V  A  Y  Q  K  R  Q  *  R  R  F  P  T  F  L  E  L  L  H  M  L  L  S  H  F  L  I  S  N  P  N  Q  D  L  V  T  G  T  I  Q  F  K  R  G  S  D  C  E  T  L  C  C  L  D  L  D  S  P  K  M  L  Y  Y  F  W  K  V  R  H  T  F  E  V  S  K  *  H  R  L  E  V  P  F  L  G  T  S  A  *  A  S  T  *  S  L  N  E  F  L  L  L  F  R  L  F  K  E  H  W  T  D  F  N  E  A  Y  L  T  P  D  K  E  A  F  N  L  S  T  D  V  T  C  V  Y  K  I  *  E  V  S  V  I  S  F  C  T  I  W  L  L  L  T  S  E  T  C  F  I  M  F  S  D  S  R  R  S  C  H  T  Q  L  K  M  H  M  N  A  L  I  M  K  K  I  W  M  S  L  Q  V  L  M  F  L  V  Y  F  N  S  K  L  L  L  P  T  I  S  *  M  F  V  *  L  I  *  V  D  E  Q  L  K  S  C  K  L  L  D  L  F  C  N  F  C  I  F  M  M  F  F  S  I  K  L  T  Y  F  I  K  E  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75068" stop="73617"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQKMDDLMQKSLKTPDFLAVFTNSTSEGIDRISYLPDDILHNILSYLYIFDVVQLSILSKRWNYIWRTMPYLNFDINSFGCERIDRLWDMGMAEKFKDFINWVLINRCGDSLVCFKLCCGDIFGKRAIFRWVRVVTARNVQELVLDFCPAEPFELPYCVVTCESLRVLKLRLDGSVLKLSNHFGFHQLKFLHLEKVELSNEHLTSCLFSRLEKLVLDGCTFGTMTMLDIVSTSLVYVSLLNYVNNVEAYNNCIVKISCPNLKVLKYGAPLAKDMIIENLLSIEVVHILFFYSDDVIKEIGMRLHKVFKNVASTSALKLCKGSVVGLYSVFHGVRNFPVTFYKLKSLKLAVAIDESCMEIMMLLLKHSPNLEVLNLFSDENYGWDENWKFHDPSESVLCLESHLKLIQLAGFKNEDKEIELLRFFLKNAQVLEELIIVWDSCSGISEEAIEEVSNFPRASSHVVVSFLNFKPKSRSRYRDNSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73330" stop="73121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSVISFCTIWLLLTSETCFIMFSDSRRSCHTQLKMHMNALIMKKIWMSLQVLMFLVYFNSKLLLPTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 67416 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 6128 bytes was the average size of a spliced alignment
$ 15632 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1736 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 11:48:35
-->
