<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 11:24:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E349213" ref_strand="+" ref_description="SGN-E349213 [cTOS-2-M24]">
      <seq>tttaatggaaacattgatgaacctctagaagatggggacactgctcttcatattacttgtctgtatggccatctggcatgtgtggagctactgttagagagaggagcttctgtggaggctaaggatgaagatggagcaattccattgcatgatgcttgtgctggaggatacacagaaatagcccgtctgctaatcaacaatgcacctgaccctgaatgcgtgaaaaggatgctggacacctttgatgaagaaggtgatgcgcctctccatcatgccgccagaggtgaacatttagatgtgatcagattattgatagcttcaggggcttctgcttgtaggaacaatttattaggaaggaccccatctgagcttgttgagcctgaaagtgaagcttgcataatcttagacgaagctataagtgctgaaatcggccgtccctataggtctacgtaaagaaaatttggacgctcggctattgtcgatatgtttccccttgttctgtaggtactagtgttatattagaaactcggatattatgcttgaatgttaaaatactctttatatagtgagattgcacattgcagtatgagaaatactcatcttttttgaagcgactgttaaatgattcatcaactagaattatagaatatggaaactttatttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="3791" stop="5643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4091" g_stop="4177" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4178" i_stop="4306" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4307" g_stop="4385" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="166" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4386" i_stop="4629" i_length="244">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4630" g_stop="4724" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4725" i_stop="4843" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4844" g_stop="4939" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4940" i_stop="5033" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5034" g_stop="5342" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="666" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="677"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E349213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4091" e_stop="4177"/>
          <exon e_start="4307" e_stop="4385"/>
          <exon e_start="4630" e_stop="4724"/>
          <exon e_start="4844" e_stop="4939"/>
          <exon e_start="5034" e_stop="5342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAGGTTGGTCCACTCTCTATTCTCAAGTCGGAAACAGTCCCTACAGCAGACATTACATTACGGTGGATCTTTGGTGTTGATTTCATTATCATGTTTTTGACTAATACTAATATAATATTGTTTTTGACTCAGCTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAGGTATACCATAAGTTTACCAGTGTTCCAAGTCCTTCATTGACGAATCTTTTCACCATAACGAGATGTAATAAACTAGTAAATTGTACAGTCAGGTTTTAAACGCATTTATTAAGCATTAAGTGAACTAACTACATTAACCGAGCCTTTTGAGGAAGTGAGGAGTAAGGGGATCAATGTAGGTTTCTGTTAAAAAGGAATCATAAGCTTGCATTTCTTACTTTCTGAATGCTGATTATTTCAACAGGATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCGGTGAGGCATTTCTACTAATATTTAACGCTATGCAAAGTTTCAATTATTTAAATATTGGAAATTAGTAAATGAAACAGCTACAGCACTTGTACTGATTGTATTTGTTGTAATTTTCATAGCCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGGGTAAGTGCAGCAAATACTCAAATTAGACTTTCTTTTTTTTTAATTTTATGTCTGATTAACTCAATTTGGCTCGATTGACTTGTGATTATCGCAGACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</genome_strand>
        <mrna_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG.................................................................................................................................CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG....................................................................................................................................................................................................................................................GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG.......................................................................................................................CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG..............................................................................................ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E392072" ref_strand="-" ref_description="SGN-E392072 [TUS-24-L23]">
      <seq>aacctttttgatgggtgggcaaaagagggggagctgtatagtaataatcgggattgtgtaaagatggtggttggaaataaagttgacagagaatccgagagagttgtgaccagggaagaaggcattgctttagggaaggaactggggggtttattttttgaatgtagtgttaaaactggggaaaatgtgcaaaattgctttgaagagcttgccttaaagataaggggggggcttagtttccttgaagaaggatccactgtagggaagggaaattttttgaaacggaaacaagaacggcaaacccaacgggggggggggggttgctgctcatgataaaaaaaattgtgcattagatggtgcacatttcaaatatgtttatggtgttttttttttttttttactgttttttttttgggggtgctttgaaaggggttagtagtttcatgtaaagtaattgatggatgttggtcattgaccaatgtttttgttaatttttgccagattgctgtcaaattggggggtatttcataattttaatgggcatttcatcggtaaaaaaaaaaaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="7444" stop="5264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7144" g_stop="7055" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7054" i_stop="6437" i_length="618">
            <donor d_prob="0.777" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6436" g_stop="6308" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="219" r_length="129" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6307" i_stop="5900" i_length="408">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5899" g_stop="5565" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="554" r_length="335" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="607"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E392072" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392072" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7144" e_stop="7055"/>
          <exon e_start="6436" e_stop="6308"/>
          <exon e_start="5899" e_stop="5565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</genome_strand>
        <mrna_strand>AACCTTTTTGATGGGTGGGCAAAAGAGGGGGAGCTGTATAGTAATAATCGGGATTGTGTAAAGATGGTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGTTGTGACCAGGGAAGAAGGCATTGCTTTAGGGAAGGAACTGGGGGGTTTATTTTTTGAATGTAGTGTTAAAACTGGGGAAAATGTGCAAAATTGCTTTGAAGAGCTTGCCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGGGGGGCTTAGTTTCCTTGAAGAAGGATCCACTGTAGGGAAGGGAAATTTTTTGAAACGGAAACAAGAACGGCAAACCCAACGGGGGGGGGGGGGTTGCTGCTCATGATAAAAAAAATTGTGCATTAGATGGTGCACATTTCAAATATGTTTATGGTGTTTTTTTTTTTTTTTTACTGTTTTTTTTTTGGGGGTGCTTTGAAAGGGGTTAGTAGTTTCATGTAAAGTAATTGATGGATGTTGGTCATTGACCAATGTTTTTGTTAATTTTTGCCAGATTGCTGTCAAATTGGGGGGTATTTCATAATTTTAATGGGCATTTCATCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E329576" ref_strand="+" ref_description="SGN-E329576 [cTOD-11-P15]">
      <seq>gaccgtgaagaacaacgaaaaacaattcaattttttttcacagatatttatacctgcaaggcccaagactcatggcgaaaataaaaccacaagcacttttgctgcaaagcaaaaagaagaaagggccaagtggaattagtgtccctacgattattctatatggcttaattgttgctgtaatggtgtttttcctgtttgctacttatagacactggtctcgaaggtcaatgattcagacacgggatgaattgtcaaccactgaggatgaaaatacgtttattgagcataagagatctgatgtcaatggccctacatatgcttccataaccacctcaaaaggattgataattgtggaactttacaaggatggttctcctgacattgttgatgaatttgttgatttctgtcagaagggccacttcaaggggatgcgatttaatcgtgtaataaagcactttgtaatccatggtagtaaagttgataaacctgaaggtacagaagattggacttcgaggggaaagcattacagtcgactggacacaagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="8697" stop="16091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8997" g_stop="9039" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9040" i_stop="10029" i_length="990">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10030" g_stop="10209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="223" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10210" i_stop="13309" i_length="3100">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13310" g_stop="13349" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="263" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13350" i_stop="14322" i_length="973">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14323" g_stop="14379" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="320" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14380" i_stop="14807" i_length="428">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14808" g_stop="14893" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="406" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14894" i_stop="15653" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15654" g_stop="15791" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="544" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15886" g_stop="15890" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="549" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E329576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8997" e_stop="9039"/>
          <exon e_start="10030" e_stop="10209"/>
          <exon e_start="13310" e_stop="13349"/>
          <exon e_start="14323" e_stop="14379"/>
          <exon e_start="14808" e_stop="14893"/>
          <exon e_start="15654" e_stop="15791"/>
          <exon e_start="15886" e_stop="15890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGTGAAGAACAACGAAAAACAATTCAATTTTTTTTCACAGGTGACTCAAAAATTTTATTCAATTTTTCATATTTCAGTTGATTTTTCTGTTCAAAAATCGAATCGTAATTGTAGCTAGGGTTTATTTTTCGCATAATTTAGGTACAATATGTTAAAATAAATGTCTTGATTTTGTAAATTTAAGTAGAATCTGAGAGTTTCATGTGTTAATTTGAAAAAGAAATAGATTCAGATCGGTTCACAGATTGTTTTAAGCAAACCCCATGTTTATGGAAAGAGCTTAATTTTTTTTTTTTTTTAATGTTGGACTGTGTTGATGAATTTAGCTTGGAACTTCAATTTAGGAAATATGAAGTTAAAATATTTTTGGGATTATTTATTTTATGTAATTATCAATTTGATTGCAAATATAAAAATGTGATTTTTGTGTATCAGCTTGTAGTATTGATCTTGTAGTTTATTGTCCTTTTGAGTTTGGTATGATCTGTTTTTTCTTTTTTTGTACTTGGATTATTGTATTATCTTGCTATGAGTACTGTTGATGGTTGTCTATAGTATTTTGCCATTACTACTTCATTTCCGCTATTCCTTTCTCTATACTGCTTTGGATTGTTTTTTTTCCGTGAGCTGAGGGTCTATTGGAAATAGTCTCGCTATTCCAAGGGGGATGGGGGTGGGTGGGTAAGGTCTTCGTGCACTTTTACCCTCTGTAGACCCTGCTTTGTGGGATTACGCTGGGTATGTAGTTCGATTTTTTTGCATCTGAATATGGGATTTTGAATGGCTGGTGATTTAATAAATTTGTGAAGACGAATAAAATTTTTAAAGAATTTAATGGTGAAAGAAATTTTATTTTGGTCCATTAAGTTGATTTTTGAAACTGATTTTAGCTTTGCTATCTGGCAACATATCTTAGATTTAAATTGTATTTTTAGTTTGGTTGTTCTCAAAATATTTATACTGTTTTTGTTGGTTTAGCTTGGTAAAATGTCTTTTAATTTGGTCTTTTTTTTTTTTTTTTTAAATTCAGATATTTATACCTGCAAGGCCCAAGACTCATGGCGAAAATAAAACCACAAGCACTTTTGCTGCAAAGCAAAAAGAAGAAAGGGCCAAGTGGAATTAGTGTCCCTACGATTATTCTATATGGCTTAATTGTTGCTGTAATGGTGTTTTTCCTGTTTGCTACTTATAGACACTGGTCTCGAAGGTTTGTCAAAATCCTTTCTTTGTACGTACTAGTATTGTTGTAGCTATCTCAGATGCTTGTTCTAGTTGCTTGTAGGGTATAAATTTTGTAATTTTTGAGCTGTTCATTGATATGTTGAGCTTATTGTTGGTTTGGATTTTACGTCTGGAGCACAAGCTGAGAAAGAGATAAACCTGTGTGGGTACGATTATTTTTTGTTCTTGTAACTGTCAAATCCCCGAGAATCAATGGCATACAGTTCAAAACTGGTGGATTATAGGTACAATTATATGAAAGTAGTAAAGACATTTAGGGAGAAAAAAACAAATTTCTTCACTTTTTAACCCATATGATGCAAAAATAACTCCGACATACATTACACCTAAATGACTTAAAAGATATTTTGTCCTTTTAGTGGATGGATTGGAGGATGTGTCTACATTTACAAATGATGGGGTGAGTTGTGCATTCAAGGATCTGAAGATTATGGCTGAGCAAGGTTCAATTAAAAGTTAATTGCCATATCTCTAAGTCTTGGTTGACGGAGTTAGCCGAATATGTACTATTAGGAGGATTCAGGTATCTGGTGTGATAGTTAAGGTGTGCACAAGTTACTTCGGCTACCATTATTATAAAAAATAGAAAGAATACTATGCCTCAACCCAAGCTAGGTGGGTTTGTCTGTGTGAATCCTTATAAATGCGTTGTTTGGGTCCCTAATATTTCAGTACTCCATACTTAAGAAGTATTTAGCACTAGGGTCAAAATTTTCACCAATGTGCTCATTATCTTCACAATATAAAAAGAGAAATAATAATGAAGTAGCGATTTTGAAAAAAAACAAACTCCTTTTGGATTAGTGCTAACATGTTTTCCTTTTGCATACATAAATGAATTTATTGCTTATAAGATCCTACGCAAGATGATGGAATCGATTTAGATCATCTCTGTATCTTCACAGACAGACCAGTTTTGAATGGATTGAGTTAATGGCCTGTTATGTAAATTGGTCGGGGTTGATCTTTATCATTCCAAGGTCAACTGTTTACCTTGATATCCAAATGTAATGAAGGAAAACCTGTGGTCTAAGTTTCCTAAACACCCAATGTTTCCGAACCACCTTTCTAAAACTTTTCATTGATGCCTCTGGTTGTCCATACTCCTTCTCTCCCGCAGTCTCTTCATTTTCTAAGAACATGTGATGGCTAGAGGAAAATCTAGATCATCTAAGGTTGAAGGTACCATGAAAACGTCCATGTTATAAGAATCGATAGTGACAAGAATCTAATGGCAGAACAGCTGCTGGTGATGAGCTATGAGGCTTTCTTTGGTTTTGACACCAAGGTTTTCTGATAGTGTTTTACTTCTGACTAGGCTTGGAAAAATGGTTTTAAAAATTAGTAACCATCCGATTCGATCCATAGATATGGGTTGGATAACTCCCATTTAAAAATGGATCAAATATGGATTTTATCCACTAAAAATGGATAGTATGAATACCCATATTATCAATACTCGTTTGTCTGCTTGTTTCAATTTGATTATTTGGTTTTAACTGGCACAGTGTTGAAAAAAGTGAAAAAAACTTTTGATTTTGTGGTCTTATACTAAAGATAGGTAGAATGTACCCAAATGTCTTTTAATCTTGTGCTCTTGAACATGTCACGTGGAAAGTTGAAATCAAAGAGTTGCCAAAAAAAGGAAAGAGTTATTCTTTATAAACGAAATAAAAAGGAAAGTAAGAAAAACAAATTGAAATGGAGGGAGTATTTTTTATGAATTCTCGTTTTCTTGGGACTGTAAGCTTATTCTGACTTTTAGCTTGTATTCTCCGTGTTAAATATGGGTGGCTTGGATATTTTATGCGTATTCAATCTACCTATATCCAATTCATCCCCTCTGTTTGCAGCTCGTAGTGTTGAAAATGGTTTGCTGTTAGTGATCAGATTGATATTGGTTTTCATCATTAATGGATAAATCACTATATGTTTTCTGACTACTCTAGCTTATATTGAAAGGGGAAAAATGAAATGTGACAACTAACATGTCATGGACAGATCTAGAGATGCTACTTAAAAAACTCATTCGATATTGAATTATATAAATCTACTCTTTTTGGTGTTATGATGTATGAAATTTATGGTCGTTATTTGCTTGCTTATTGGTATTTTCTTTTTCCGTTTCTTTTGTTATTTTTATTTTTTTGGTGGATTGAATAAATTTTTTTTGTATATGTAAACATGTGATTCGATATCATGTATCCTTACTTTCAAAATTTCCGTTTATCAAAGAATAAGTTAAATTAATAAAATAAAAAAGAAAAAAATTTGAAACTTCTGTATTCTTGTGTTGTCATCCATATTTGAGTCTGACATTGAACTTCAGTTGTGTCTATGTTATTTAGCATGGGCTTAACTACAGTGTAGTGTAGAACATAAATCGGCAGTTGGATGTGTAAAGGTTTTGCGCTTGTTTTGGGTACTGATAGCAAGGAACTGCGTGGGTTTCGTGGCAACTAAACGAAGAGTTTGTGAACTTTACACCAAAGGGAGCATTCAAAAATTTATGAATGTGATTCTACAAGAGCAAACTTTAGTCTCTAGTAATTCATTTATTTAAGAAGTGATCAATTTTTCAGCTTTTGACTGCAAGCTAAAATTTATACCTCCCAAGGCATTTTTTTGCTGTTTTTACAAAACCCCTGGGTATTAACAGTCGTTGCCTTAATTTGACACTTGTTAAATGTAGCTCTTATTTCTTAATGGTTCATGCATTCATATAATATTCAGGAAAAACTAGTTTTGTTCTATATAAGCCCCGTTTGTACCTTGTCAAAACTCAAAAGAAACCTCATTAGTAAGTCAAAAGTAACTCTTCATGTGAAAAATCTTCATAAAATGCACATTTTCTGAGCGAATGCAATTATGACTCAAGTCTTTCGCACTTGTGTCGTGAACTATCCGTACATGTAACTTTTTAATTAATTTATGGGATACTGCAAGTCTATCGATCATTTTAAAGTACATTATAACAATAACAACTTAGCCTCAATCCCAAGCAAATTGGGTCTGGCTGGCGATATGAATGTTCGCTGACCTTACACTTGATAATTTTCTTGTAGGTCAATGATTCAGACACGGGATGAATTGTCAACCACTGAGGTATGAAAAACTGCAATTTCAATTCTGCTAGATGATAAATTGTTGTCCATTTTAGAAAAATATGGGACTGATTTATTTGTAGCTTGTGATGGTCTGAGATGAGATACTTGTCACTGATAAATTGCATTTGTCACAGTTAAAAGTTTCAATGAGCGGAATTCTTTTCGAGTAGACCTTGCTGTTGTGAGAATTTCATAATTCTTGACCTGTAGGAGGGATTGGTTTCCCGCCTCATAGGGATGGTGGACCTGTAACCCCCCACACCCACACCCTATTTAGACTTTTTGGGACTTTTCATCTTTCTGAACTGATGTCACAATCCACCAGTGTTGTCAAAAGCGCGCTTAAGCCCTGAAGCGAGGGTCAAAGTTTGTTCAGCGTCTCATGTCGCTTAATGTGCTTTATTGTCATCAGCCTCTTTTGAAGAAGAATTGATATTTCTCTTTATCATAATTCTTTTCAAATTTTCTTTATTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTAGACTAAACATATATATGGTGTCGTTTGGTTGGGACCCATGATCAATTATTCTGGGGTAGTTATCCTGGGATAACGTATCCCATCATGTATATGGGATAACTTATCCCATCACTGTGGTTTAAATGATGGGATAAGTTATCCCAAACATGGCAACCAAACAAGACACCAAATTTTTATTCCAGGACTACTTTTTTTATCCCAGGACTATTTATTCTTATCCGTCACACCAAACAACCCCATGTAGTTGTATTTTCTTCATTTGCACCTTTTTTCATTACAGCCCGCACTTTATTTACGCTTAAAGCCCAACGGATATTACTACTATATTGCATTTTTTGCTTTTGATAACACTGGAATCCACACTACGAGATCATCTGGGATTGAATAAGAATAGATGCAGATGAAATTCTTGGTTATTCTTCTTCTGTGCTGAATGCATATTTCTGTTTGCATGATGCAGGATGAAAATACGTTTATTGAGCATAAGAGATCTGATGTCAATGGCCCTACATATGCTGTGAGTACAGAAAATTTCTTCTGCATTTTATATGGAAGTGGTCACATGAGTGATTCAATTCTGTTTTGTTAAAAGAAACAAGTATTTTAATACTGGTTCTTATAGAATTTCAGAACTTTGTATACAGAAGTAATGCTAGGGATCTGCTTCAAGTATCCTTTTCTAGTTTATTTCTTCCTACTTCCAGCACGTGCTCTTACCACATCATATGATTAACTTCCAAGTATTAACGAGTCATTTTATGAGAAAAATTCCCTTTTTGGGACTTCTGTAAATGGAGGCAAATGACTGTCTACTACTGTTTCGGTTGTTTTACAAGTTCTATTCTTTTGTATATTTTGGGTACGATTGGATAATTCGCTACCCTATTTGGTTGTTTGTCTCTGCTTGATTCTTTTTCCTTTCTTAACTCTTTTAAACTTTTACAGTCCATAACCACCTCAAAAGGATTGATAATTGTGGAACTTTACAAGGATGGTTCTCCTGACATTGTTGATGAATTTGTTGATTTCTGGTGCGTACTTCATTATCTTTGGTTTATGTCTATGAAAATGTTCCGTTGAAATGATGTCTGCATTTGCGTTCGTGTTACCTTAGTTTTTTTCTTCACTCTACAGTGGTCGATACTTTGGCGGTGGGCGTGTGAGGGTGGGGTGGCGTAGTGTCTAGAAGCATGTATTGATGTTGGTTTTGAGATTCATGCTGATGAAAGGTGTTAGAGTGGGTTAGAGTCCCACATTGGTTGGGTAATGAATTGATGGTCTACTTATGAGCTAACTTTGGGGTTGAGTTAGGCCTAGACGTCATATCTTTACAAAATGATATAAAGCTTATTTCTTGATCAATTCCCCACTGTTTATATGAACCCCAAGTCTTCGAACTTTGATCTCCAGATGAGGGCTTATTAAAGAGTTCTCTTCTTCAGAAGTAGTTCATTTTCTTTGTTATCTGAAAGAGAACCTTTTATTCTATGACTGGTAATTTCAGTCTCACAGTGATCAATAAATGAATACTAAAGCATAACATTGTGTAGAAGTAGAACCAAAATCTAGGAAATGTGCCGGTGGAGATGTATCATTCCTAATTTGCTAGAGTTCACAATGTATAAGTCATGAAGTTGACACTTTGAGGCCAGTGGCGATGATAGATGTTGCTTTATTTAGTATAGTAGTTGCATGAAGAGGCTCTGCGAACCGAGTTCTCTGCATTTGTGGTTATACTGTAAAAGCTTGTCATAACTCATATGCATAAACTCTATTTAAATGCCTTTGCAGTCAGAAGGGCCACTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAGGTTTTGTTAATCTTATTTGCTGTTTTTTGGTCTAAACAAGTCTTGATATACAGTTGTTTTCATTGATCACTAAGTTACAGTTCTCTATATTCAGCCTGA</genome_strand>
        <mrna_strand>GACCGTGAAGAACAACGAAAAACAATTCAATTTTTTTTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTATACCTGCAAGGCCCAAGACTCATGGCGAAAATAAAACCACAAGCACTTTTGCTGCAAAGCAAAAAGAAGAAAGGGCCAAGTGGAATTAGTGTCCCTACGATTATTCTATATGGCTTAATTGTTGCTGTAATGGTGTTTTTCCTGTTTGCTACTTATAGACACTGGTCTCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGATTCAGACACGGGATGAATTGTCAACCACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAAATACGTTTATTGAGCATAAGAGATCTGATGTCAATGGCCCTACATATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAACCACCTCAAAAGGATTGATAATTGTGGAACTTTACAAGGATGGTTCTCCTGACATTGTTGATGAATTTGTTGATTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGGGCCACTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG..............................................................................................CCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E353781" ref_strand="+" ref_description="SGN-E353781 [cTOS-10-P22]">
      <seq>atgcttccataaccacctcaaaaggattgataattgtggaactttacaaggatggttctcctgacattgttgatgaatttgttgatttctgtcagaagggccacttcaaggggatgcgatttaatcgtgtaataaagcactttgtaatccatggtagtaaagttgataaacctgaaggtacagaagattggacttcgaggggaaagcattacagtcgactggacacaagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaagttgccatgtccataacatgaagtttttttttaaacctcattgaacggcgtctgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="14508" stop="17541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14808" g_stop="14893" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="91" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14894" i_stop="15653" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15654" g_stop="15791" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="229" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15886" g_stop="16036" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="380" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17096" g_stop="17241" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="527" r_length="147" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E353781" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14808" e_stop="14893"/>
          <exon e_start="15654" e_stop="15791"/>
          <exon e_start="15886" e_stop="16036"/>
          <exon e_start="17096" e_stop="17241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAACCACCTCAAAAGGATTGATAATTGTGGAACTTTACAAGGATGGTTCTCCTGACATTGTTGATGAATTTGTTGATTTCTGGTGCGTACTTCATTATCTTTGGTTTATGTCTATGAAAATGTTCCGTTGAAATGATGTCTGCATTTGCGTTCGTGTTACCTTAGTTTTTTTCTTCACTCTACAGTGGTCGATACTTTGGCGGTGGGCGTGTGAGGGTGGGGTGGCGTAGTGTCTAGAAGCATGTATTGATGTTGGTTTTGAGATTCATGCTGATGAAAGGTGTTAGAGTGGGTTAGAGTCCCACATTGGTTGGGTAATGAATTGATGGTCTACTTATGAGCTAACTTTGGGGTTGAGTTAGGCCTAGACGTCATATCTTTACAAAATGATATAAAGCTTATTTCTTGATCAATTCCCCACTGTTTATATGAACCCCAAGTCTTCGAACTTTGATCTCCAGATGAGGGCTTATTAAAGAGTTCTCTTCTTCAGAAGTAGTTCATTTTCTTTGTTATCTGAAAGAGAACCTTTTATTCTATGACTGGTAATTTCAGTCTCACAGTGATCAATAAATGAATACTAAAGCATAACATTGTGTAGAAGTAGAACCAAAATCTAGGAAATGTGCCGGTGGAGATGTATCATTCCTAATTTGCTAGAGTTCACAATGTATAAGTCATGAAGTTGACACTTTGAGGCCAGTGGCGATGATAGATGTTGCTTTATTTAGTATAGTAGTTGCATGAAGAGGCTCTGCGAACCGAGTTCTCTGCATTTGTGGTTATACTGTAAAAGCTTGTCATAACTCATATGCATAAACTCTATTTAAATGCCTTTGCAGTCAGAAGGGCCACTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAGGTTTTGTTAATCTTATTTGCTGTTTTTTGGTCTAAACAAGTCTTGATATACAGTTGTTTTCATTGATCACTAAGTTACAGTTCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAG-TTTTTTTTAAACCTCATTGAACGGCGTCTGCAGC</genome_strand>
        <mrna_strand>TCCATAACCACCTCAAAAGGATTGATAATTGTGGAACTTTACAAGGATGGTTCTCCTGACATTGTTGATGAATTTGTTGATTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGGGCCACTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG..............................................................................................CCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAAGTTGCCATGTCCATAACATGAAGTTTTTTTTTAAACCTCATTGAACGGCGTCTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E241888" ref_strand="-" ref_description="SGN-E241888 [cLED-27-H15]">
      <seq>cttcaaggggatgcgatttaatcgtgtaataaagcactttgtaatccatggtagtaaagttgataaacctgaaggtacagaagattggacttcgaggggaaagcattacagtcgactggacacaagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataatttttttttttttcttgttttttccccaaattttccccttagactaatgttcagatgttattttataacatactatgttaagagtaaaaaactatcttgagtttaccctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15366" stop="17784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15666" g_stop="15791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15886" g_stop="16036" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="277" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17096" g_stop="17489" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="669" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E241888" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15666" e_stop="15791"/>
          <exon e_start="15886" e_stop="16036"/>
          <exon e_start="17096" e_stop="17489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAGGTTTTGTTAATCTTATTTGCTGTTTTTTGGTCTAAACAAGTCTTGATATACAGTTGTTTTCATTGATCACTAAGTTACAGTTCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGC</genome_strand>
        <mrna_strand>CTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG..............................................................................................CCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA-TTT-TTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E392786" ref_strand="-" ref_description="SGN-E392786 [TUS-36-L12]">
      <seq>caaggggatgcgatttaatcgtgtaataaagcactttgtaatccatggtagtaaagttgataaacctgaaggtacagaagattggacttcgaggggaaagcattacagtcgactggacacaagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataatttttttttttttcttgttttttccccaaattttccccttagactaatgttcagatgttattttataacatactatgttaagagtaaaaaactatcttgagtttaccctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15369" stop="17784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15669" g_stop="15791" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15886" g_stop="16036" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="274" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17096" g_stop="17490" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="667" r_length="393" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E392786" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392786" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15669" e_stop="15791"/>
          <exon e_start="15886" e_stop="16036"/>
          <exon e_start="17096" e_stop="17490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAGGTTTTGTTAATCTTATTTGCTGTTTTTTGGTCTAAACAAGTCTTGATATACAGTTGTTTTCATTGATCACTAAGTTACAGTTCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCA</genome_strand>
        <mrna_strand>CAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG..............................................................................................CCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA-TTT-TTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E236194" ref_strand="-" ref_description="SGN-E236194 [cLED-20-M19]">
      <seq>ttcgaggggaaagcattacagtcgactggacacaagcctgaagcacaaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataatttttttttttttcttgttttttccccaaattttccccttagactaatgttcagatgttattttataacatactatgttaagagtaaaaaaaaatcttgagtttaccctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15456" stop="17784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15756" g_stop="15791" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15886" g_stop="16036" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="187" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17096" g_stop="17489" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="579" r_length="392" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E236194" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236194" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15756" e_stop="15791"/>
          <exon e_start="15886" e_stop="16036"/>
          <exon e_start="17096" e_stop="17489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGGGAAAGCATTACAGTCGACTGGACACAAGGTTTTGTTAATCTTATTTGCTGTTTTTTGGTCTAAACAAGTCTTGATATACAGTTGTTTTCATTGATCACTAAGTTACAGTTCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGC</genome_strand>
        <mrna_strand>TTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG..............................................................................................CCTGAAGCACAAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA-TTT-TTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAAAAATCTTGAGTTTACCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E396655" ref_strand="+" ref_description="SGN-E396655 [TUS-43-N6]">
      <seq>tctctatattcagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataatttttttttttttcttgttttttccccaaattttccccttagactaatgttcagatgttattttataacatactatgttaagagtaaaaaactatcttgagtttaccctaatgtgcaaagtacaacacattgaatgagttttcatctaagggccattataaaccccttctgaatgacaatataaccacttctgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15573" stop="17871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15873" g_stop="16036" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17096" g_stop="17570" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="637" r_length="473" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E396655" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15873" e_stop="16036"/>
          <exon e_start="17096" e_stop="17570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCAGAGTACAACACATTGAATGAGTTTTCATCTAAGGGCCATTATAGACCCCTTCTGAATGACAATATAACCACTTCTGTTTA</genome_strand>
        <mrna_strand>TCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA-TTT-TTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCAAAGTACAACACATTGAATGAGTTTTCATCTAAGGGCCATTATAAACCCCTTCTGAATGACAATATAACCACTTCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E395808" ref_strand="+" ref_description="SGN-E395808 [TUS-18-M15]">
      <seq>tctctatattcagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataatttttttttttttcttgttttttccccaaattttccccttaaactattgttcagatgttattttataacatactatgttaagagtaaaaaactatcttgagtttacccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15573" stop="17783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15873" g_stop="16036" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17096" g_stop="17483" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="550" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E395808" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15873" e_stop="16036"/>
          <exon e_start="17096" e_stop="17483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTA</genome_strand>
        <mrna_strand>TCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA-TTT-TTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAAACTATTGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E231479" ref_strand="+" ref_description="SGN-E231479 [cLED-4-G24]">
      <seq>ctctatattcagcctgaagcacgaagcatttatgcttggtacttcaaaaacaaatcatgaaggcgaaggatttgatctgtttataacaactgcaccaattccagatctgaatgacaagatcaatgtatttgggcgtgtaataaagggagaggatatcgtgcaggaaattgaagaggtagataccgatgaccattatcgacccaaaactcccgttcagatcaacgaagtgactctgaaatacagtacttgaaggttgcagtgtccataacatgaagttttttttaaacctcattgaacggcgtctgcagcacaaatgtttacttggggtctggattggaaaccatcatttgctgattttaaatcctcaatattgacatgacacgacttgctatcgatgattctggtgtaaaaatctggatataatattccatttgtataattnttttttttttcttggtttttccccaaattttccccttagactaatgttcagatgttattttataacatactatgttaagagtaaaaaactatctttgagttaccctaatgtgcagagtacaacacattgaatgagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="15574" stop="17814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15874" g_stop="16036" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17096" g_stop="17515" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="581" r_length="418" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E231479" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15874" e_stop="16036"/>
          <exon e_start="17096" e_stop="17515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAGGTACTAGTTACCTTCTCCTTTTCTCTATCAGTTGTTGCATAGAAAACGATGCAGATAAGCATTTGATATTTCACTGCCTTCCCATATCATTTAGCATTTAATAGTAATCCAAGTCCTGAACAGTGTGGATAATAACAACATACCCAGTGTATTTTTCAAGTGGGGTCTGGGGAGGGTAGAGTGTATGCAGACGTTACCCCTACCTCGTGGAGACAGAGAAGTTGTTTGTGAAAGACCCTCGGCTCAAGTAACCCATAACAAGGCAGTTTGAAAGGGACAATACAGAGGTAGAACAGGACACAACAAATAAGATTATAGTAGTATAAGACACACCAAATAAGATTATAAGGTATAGCAAATAATAGAGGAAGTGTAACAGATCATACAAAGCAGAATAATGTGATAAACGAAGCACAAGAAACAACAGGTGGTACCAGTAATCTAAGAACAGGAAACTATGAGAATACTGCTAATACTTTTTTACAACCAAGCCTACCACGCAGGATACCGAGACAACCCTCAACTGCCTTCTCTCTTCTACCTAATTCATAACCTCCATATCCTCCTATCTAAAGTCATGTCCTTGGAAAGTTGGAGTTGGGTCATGTCTTGTCTAATCACCTCTCCTTAATAGTTCTTCGGCCTATCTCGTCGACCCCTCTTTAAACCCACCCCTACCAATCTATCCCACCTCCTTACTAGGTCATTTTCTCATCTCCTCTTCACATGTCCAAACCATCTTAGTTTCGTTTCTCTCATCTTGTCAACCACAAAGGCTCCTCCCACCGTGTCCTGGATGCACAACATTATTTCATCATCCAGCTCTAGCAAAAAAATTTTTAACCAAATAAAATTAATCCAAAGTATAACACAACTATAAGTAAAACATCGATGCAATGTAAAAATGGAGCTAAGAATGGGGTAAAACAAAGAACAAAAAACTAAATATGCAAATTCGAATTTGGTTGCTATTTCATCTACAATTTTTGTGAAGAAATTCCTTTCTTCTGTCGTTAATTCGGCTCCTTTAATGTTACATGGTTTATTATGGCCACTCAGGAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCAGAGTACAACACATTGAATGAGTTTT</genome_strand>
        <mrna_strand>CTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAA--TTNTTTTTTTTTTCTTGGTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTTGAGTTACCCTAATGTGCAGAGTACAACACATTGAATGAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E395876" ref_strand="+" ref_description="SGN-E395876 [TUS-18-M15]">
      <seq>ttttttttttaacagaagtggttatattgtcattcagaaggggtctataatggcccttagatgaaaactcattcaatgtgttgtactctgcacattagggtaaactcaagatagttttttactcttaacatagtatgttataaaataacatctgaacattagtctaaggggaaaatttggggaaaaaacaagaaaaaaaaaaaaattatacaaatggaatattatatccagatttttacaccagaatcatcgatagcaagtcgtgtcatgtcaatattgaggatttaaaatcagcaaatgatggtttccaatccagaccccaagtaaacatttgtgctgcagacgccgttcaatgaggtttaaaaaaaacttcatgttatggacactgcaaccttcaagtactgtatttcagagtcacttcgttgatctgaacgggagttttgggtcgataatggtcatcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="17871" stop="16815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17578" g_stop="17116" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17115" i_stop="16861" i_length="255">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16860" g_stop="16853" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="469" r_length="8" r_score="0.375"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E395876" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17578" e_stop="17116"/>
          <exon e_start="16860" e_stop="16853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATTAAACAGAAGTGGTTATATTGTCATTCAGAAGGGGTCTATAATGGCCCTTAGATGAAAACTCATTCAATGTGTTGTACTCTGCACATTAGGGTAAACTCAAGATAGTTTTTTACTCTTAACATAGTATGTTATAAAATAACATCTGAACATTAGTCTAAGGGGAAAATTTGGGGAAAAAACAAGAAAAAAAAAATAAAATTATACAAATGGAATATTATATCCAGATTTTTACACCAGAATCATCGATAGCAAGTCGTGTCATGTCAATATTGAGGATTTAAAATCAGCAAATGATGGTTTCCAATCCAGACCCCAAGTAAACATTTGTGCTGCAGACGCCGTTCAATGAGGTTTAAAAAAAACTTCATGTTATGGACACTGCAACCTTCAAGTACTGTATTTCAGAGTCACTTCGTTGATCTGAACGGGAGTTTTGGGTCGATAATGGTCATCGGTATCTACCTCTTCAATTTCCTGAGTGGCCATAATAAACCATGTAACATTAAAGGAGCCGAATTAACGACAGAAGAAAGGAATTTCTTCACAAAAATTGTAGATGAAATAGCAACCAAATTCGAATTTGCATATTTAGTTTTTTGTTCTTTGTTTTACCCCATTCTTAGCTCCATTTTTACATTGCATCGATGTTTTACTTATAGTTGTGTTATACTTTGGATTAATTTTATTTGGTTAAAAATTTTTTTGCTAGAGCTGGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTAACAGAAGTGGTTATATTGTCATTCAGAAGGGGTCTATAATGGCCCTTAGATGAAAACTCATTCAATGTGTTGTACTCTGCACATTAGGGTAAACTCAAGATAGTTTTTTACTCTTAACATAGTATGTTATAAAATAACATCTGAACATTAGTCTAAGGGGAAAATTTGGGGAAAAAACAAG-AAAAAAAAA-AAAATTATACAAATGGAATATTATATCCAGATTTTTACACCAGAATCATCGATAGCAAGTCGTGTCATGTCAATATTGAGGATTTAAAATCAGCAAATGATGGTTTCCAATCCAGACCCCAAGTAAACATTTGTGCTGCAGACGCCGTTCAATGAGGTTTAAAAAAAACTTCATGTTATGGACACTGCAACCTTCAAGTACTGTATTTCAGAGTCACTTCGTTGATCTGAACGGGAGTTTTGGGTCGATAATGGTCATCG...............................................................................................................................................................................................................................................................GGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E396654" ref_strand="+" ref_description="SGN-E396654 [TUS-43-N6]">
      <seq>ttttttttttaacagaagtggttatattgtcattcagaaggggtctataatggcccttatatgaaaactcattcaatgtgttgtactctgcacattagggtaaactcaagatagttttttactcttaacatagtatgttataaaataacatctgaacattagtctaaggggaaaatttggggaaaaaacaagaaaaaaaaaaaaattatacaaatggaatattatatccagatttttacaccagaatcatcgatagcaagtcgtgtcatgtcaatattgaggatttaaaatcagcaaatgatggtttccaatccaaaccccaagtaaacatttgtgctgcaaacgccgttcaattttttttaaaaaaaacttcatgttatggacactgcaaccttcaagtactgtatttcaaagtcacttcgttgatctgaacgggagttttgggtcaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="17871" stop="16823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17578" g_stop="17123" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E396654" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17578" e_stop="17123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATTAAACAGAAGTGGTTATATTGTCATTCAGAAGGGGTCTATAATGGCCCTTAGATGAAAACTCATTCAATGTGTTGTACTCTGCACATTAGGGTAAACTCAAGATAGTTTTTTACTCTTAACATAGTATGTTATAAAATAACATCTGAACATTAGTCTAAGGGGAAAATTTGGGGAAAAAACAAGAAAAAAAAAATAAAATTATACAAATGGAATATTATATCCAGATTTTTACACCAGAATCATCGATAGCAAGTCGTGTCATGTCAATATTGAGGATTTAAAATCAGCAAATGATGGTTTCCAATCCAGACCCCAAGTAAACATTTGTGCTGCAGACGCCGTTCAATGAGGTTTAAAAAAAACTTCATGTTATGGACACTGCAACCTTCAAGTACTGTATTTCAGAGTCACTTCGTTGATCTGAACGGGAGTTTTGGGTCGATAATG</genome_strand>
        <mrna_strand>TTTTTTTTTTAACAGAAGTGGTTATATTGTCATTCAGAAGGGGTCTATAATGGCCCTTATATGAAAACTCATTCAATGTGTTGTACTCTGCACATTAGGGTAAACTCAAGATAGTTTTTTACTCTTAACATAGTATGTTATAAAATAACATCTGAACATTAGTCTAAGGGGAAAATTTGGGGAAAAAACAAG-AAAAAAAAA-AAAATTATACAAATGGAATATTATATCCAGATTTTTACACCAGAATCATCGATAGCAAGTCGTGTCATGTCAATATTGAGGATTTAAAATCAGCAAATGATGGTTTCCAATCCAAACCCCAAGTAAACATTTGTGCTGCAAACGCCGTTCAATTTTTTTTAAAAAAAACTTCATGTTATGGACACTGCAACCTTCAAGTACTGTATTTCAAAGTCACTTCGTTGATCTGAACGGGAGTTTTGGGTCAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E372593" ref_strand="-" ref_description="SGN-E372593 [TUS-31-I19]">
      <seq>aaacagctcgggcctctgacctggaaaagcagcgagatttaaaatggcagagattagcagctgctgctgggcaaggagggtaaagtacccgttgatcgttattcctgatatgttaaatgcaggattagacccccccaatcccccctgtttttttgttatagtgggattcagttttttcccttttttgtttttttgttttcaataccccggatcgtttaaaaggatgacaggccttgcagcagggggtaattcaagtatgtatttcgataatccctagtcgtggggtgctggtcaaaaatggtttgtggaagtaagatgttgtaatttgttttatattttttgtcaggagaattttttttttttgccatgaactcgatggagcaaaaaatttcgtttatttttaccctaaatcaggagtgggagagcaaaaacccaaaaataaaggacttcctcccggctttttattttgggcattttttttttgttcctttttttgaaaaaaggattttgggttttgttttttttttatgtttgtatagcttgtatggtttttggccgtttttgaaagtgttatataaaagacccccccttttgtttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="23459" stop="24659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23759" g_stop="24350" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="643"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E372593" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372593" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23759" e_stop="24350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTCGGGCCTCTGACCTGGAAAAGCAGCGAGATTTAAGATGGCAGAGATTAGCAGCTGCTGCTGGACAAGGAGGGTAAAGTACACGTTGATCGTTATTCCTGATATGTTAAATGCAGGATTAGACACACCAAATCAACCATGTTCTTCTGTTATAGTGGTATTCAGTTTTCTCCTTTTTTTGTTCTTCTGTTTTCAATACGCCGGATCGTTGAAGAGGATGACAGGCATTGCAGCAGGGTGTAATTCAAGTATGTATTTCGATAATCACTAGTCGTGTGCTGCTGCTCAAGAATGGTTTGTGGAAGTATGATGTTGTAATTTGTTCTATATTTTTCGTCAGGAGAATTTTTTTTTTCTTGCAATGAACTCGATGGAGCAAGAAATTACGTTAATTTATACACTAAATCAGGAGTGGGAGAGCAAAAGCCGAAGAATAGAGGACTTCCTCCAGGCTTTTTATTCTGGGCATTTTTCTTTTGTTCCTTCTCTTGAAAGAAGTATTTTGGTTTTTGTTTCTCTTTTATGTTTGTATAGCTTGTATGGTTTTTGGCAGTTCTTGAAAGTGTTATATAAGAGAACCTCCTTT</genome_strand>
        <mrna_strand>AAACAGCTCGGGCCTCTGACCTGGAAAAGCAGCGAGATTTAAAATGGCAGAGATTAGCAGCTGCTGCTGGGCAAGGAGGGTAAAGTACCCGTTGATCGTTATTCCTGATATGTTAAATGCAGGATTAGACCCCCCCAATCCCCCCTGTTTTTTTGTTATAGTGGGATTCAGTTTTTTCCCTTTTTTGTTTTTTTGTTTTCAATACCCCGGATCGTTTAAAAGGATGACAGGCCTTGCAGCAGGGGGTAATTCAAGTATGTATTTCGATAATCCCTAGTCGTGGGGTGCTGGTCAAAAATGGTTTGTGGAAGTAAGATGTTGTAATTTGTTTTATATTTTTTGTCAGGAGAATTTTTTTTTT-TTGCCATGAACTCGATGGAGCAAAAAATTTCGTTTATTTTTACCCTAAATCAGGAGTGGGAGAGCAAAAACCCAAAAATAAAGGACTTCCTCCCGGCTTTTTATTTTGGGCATTTTTTTTTTGTTCCTTTTTTTGAAAAAAGGATTTTGGGTTTTGTTTTTTTTTTATGTTTGTATAGCTTGTATGGTTTTTGGCCGTTTTTGAAAGTGTTATATAAAAGACCCCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E236163" ref_strand="+" ref_description="SGN-E236163 [cLED-16-P6]">
      <seq>tttatcatgttagttatcatcatacaaaataagatcaatttcgcgaggtttgagtatgcaggaagtgcagccgttgtgttgattttgctctttgccccgttgatcatcgtgtttcaagaagaagttaagctttggaacgctaagcaacaagccctggatgagcctcgattgaaagttgttagcgaaaatccgccttcagtagagctgactcagccccagaagctagctttaagtgaatctgaggaaagtttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="27208" stop="26353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26908" g_stop="26653" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E236163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26908" e_stop="26653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCATGTTAGTTATCATCATACAAAATAAGATCAATTTCGCGAGGTTTGAGTATGCAGGAAGTGCAGCCGTTGTGTTGATTTTGCTCTTTGCCCCGTTGATCATCGTGTTTCAAGAAGAAGTTAAGCTTTGGAACGCTAAGCAACAAGCCCTGGATGAGCCTCGATTGAAAGTTGTTAGCGAAAATCCGCCTTCAGTAGAGCTGACTCAGCCCCAGAAGCTAGCTTTAAGTGAATCTGAGGAAAGTTTGACAT</genome_strand>
        <mrna_strand>TTTATCATGTTAGTTATCATCATACAAAATAAGATCAATTTCGCGAGGTTTGAGTATGCAGGAAGTGCAGCCGTTGTGTTGATTTTGCTCTTTGCCCCGTTGATCATCGTGTTTCAAGAAGAAGTTAAGCTTTGGAACGCTAAGCAACAAGCCCTGGATGAGCCTCGATTGAAAGTTGTTAGCGAAAATCCGCCTTCAGTAGAGCTGACTCAGCCCCAGAAGCTAGCTTTAAGTGAATCTGAGGAAAGTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="29609" stop="28714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29309" g_stop="28988" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29309" e_stop="28988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATATAACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTGTAACACGAAGATATACGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACA-AAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="29609" stop="28714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29309" g_stop="29019" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29309" e_stop="29019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATATAACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTGTAACACGAAGATATACGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E354339" ref_strand="+" ref_description="SGN-E354339 [cTOS-17-C9]">
      <seq>tgaaagactacaatattcagatatcatatgggcgatttgctgcaaaaactaaaacagaatgtgagcttgacttgttcataatgcaagcagatggcaagaaaatagtggaccatagcaagttgaatggtttgtgctcacgtcttcaaatggaactatgtcgccctcttagagtgtcattgatgaaccgaggtcctgatgcagaattactggttgcaaaccctgtagagttatccggcaagggtcgaccgattgtcttttatgacattacactggcgctcaagatgcttaatattggcatcttttcggctgaagtagggagatatcagattggtgatcgagaatgggaaatttaccgtgtcttactagacgaagggaatggctcgggtccctcgaggaacaagattgtggaagctgtttggaatatgttgatgggttgggagtaaacaactagtgaatgtacagttcctgtgttcattgctaaaaggcctcatttgactcagtgtatatacagtggatataagtgtattaatgtagagggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="39612" stop="37976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39306" g_stop="39022" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="305" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39021" i_stop="38518" i_length="504">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38517" g_stop="38276" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="547" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E354339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39306" e_stop="39022"/>
          <exon e_start="38517" e_stop="38276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATATGGGCGATTTGCTGCAAAAACTAAAACAGAATGTGAGCTTGACTTGTTCATAATGCAAGCAGATGGCAAGAAAATAGTGGACCATAGCAAGTTGAATGGTTTGTGCTCACGTCTTCAAATGGAACTATGTCGCCCTCTTAGAGTGTCATTGATGAACCGAGGTCCTGATGCAGAATTACTGGTTGCAAACCCTGTAGAGTTATCCGGCAAGGGTCGACCGATTGTCTTTTATGACATTACACTGGCGCTCAAGATGCTTAATATTGGCATCTTTTCGGTAAGTCATCATTTATCACTCTTATGGTTTATTTCTATCCTCTGCCTTAGAGATAATCGTGTGCTAGGCTACGCTAAAAGCTGGTTTGCCAAAGGAAAAATGTCATGACGTTGATTGAACGACATACTTTTTACTTTTTTAATACAACCGATAAGAGGGTCAGTGGTACACTAGCTAATAGCCCGCCCCTCTACCCTTTTCCTCTGAAAGACCAAGTTTCCTCAGCAGCAAAGTCCGAAACCCGTGGTACCTCCAAAATTTCAAGAGTCTGAGCAACATAGCTTGGACGAAGGATATTGTTGATAATAACAATATCTCGAACCTTTCATACTGTAACCGAGCGTCTACATATGTAACTTCATTTGGCCACCTAGATAGGAAACTTAGTTGGAATGGAAATTAGAAAAAGAGGAAACGACGCTGCTTGTCTCAATGCTATGCATCTCACATGTCGTGGATTTTAAATGCACTAGTCTTGACATGTTGCTTATCGCCTTTTTTCAGGCTGAAGTAGGGAGATATCAGATTGGTGATCGAGAATGGGAAATTTACCGTGTCTTACTAGACGAAGGGAATGGCTCGGGTCCCTCGAGGAACAAGATTGTGGAAGCTGTTTGGAATATGTTGATGGGTTGGGAGTAAACAACTAGTGAATGTACAGTTCCTGTGTTCATTGCTAAAAGGCCTCATTTGACTCAGTGTATATACAGTGTATATAAGTGTATTAATGTAGAGGTAAAAAAAAA</genome_strand>
        <mrna_strand>ATATCATATGGGCGATTTGCTGCAAAAACTAAAACAGAATGTGAGCTTGACTTGTTCATAATGCAAGCAGATGGCAAGAAAATAGTGGACCATAGCAAGTTGAATGGTTTGTGCTCACGTCTTCAAATGGAACTATGTCGCCCTCTTAGAGTGTCATTGATGAACCGAGGTCCTGATGCAGAATTACTGGTTGCAAACCCTGTAGAGTTATCCGGCAAGGGTCGACCGATTGTCTTTTATGACATTACACTGGCGCTCAAGATGCTTAATATTGGCATCTTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAGGGAGATATCAGATTGGTGATCGAGAATGGGAAATTTACCGTGTCTTACTAGACGAAGGGAATGGCTCGGGTCCCTCGAGGAACAAGATTGTGGAAGCTGTTTGGAATATGTTGATGGGTTGGGAGTAAACAACTAGTGAATGTACAGTTCCTGTGTTCATTGCTAAAAGGCCTCATTTGACTCAGTGTATATACAGTGGATATAAGTGTATTAATGTAGAGGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E285471" ref_strand="+" ref_description="SGN-E285471 [cLES-10-M2]">
      <seq>ctggtcatactctcataagattgcttgccaagatcacaaaggtcttctgtatgacataatgaggacactgaaagactacaatattcagatatcatatgggcgatttgctgcaaaaactaaaacagaatgtgagcttgacttgttcataatgcaagcagatggcaagaaaatagtggaccatagcaaggtgaatggtttgtgctcacgtcttcaaatggaactatgtcgccctcttagagtgtcattgatgaaccgaggtcctgatgcagaattactggttgcaaaccctgtagagttatccggcaagggtcgaccgattgtcttttatgacattacactggcgctcaagatgcttaatattggcatcttttcggctgaagtagggagatatcagattggtgatcgagaatgggaaatttaccgtgtcttactagacgaagggaatggctcgggtccctcgaggaacaagattgtggaagctgtttggaatatgttgatgggttgggagtaaacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="40101" stop="38073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39801" g_stop="39713" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39712" i_stop="39307" i_length="406">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39306" g_stop="39022" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="373" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39021" i_stop="38518" i_length="504">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38517" g_stop="38373" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="518" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E285471" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39801" e_stop="39713"/>
          <exon e_start="39306" e_stop="39022"/>
          <exon e_start="38517" e_stop="38373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCATACTCTCATCAAGATTGCTTGCCAAGATCACAAAGGTCTTCTGTATGACATAATGAGGACACTGAAAGACTACAATATTCAGGTACATAGTTCTATATCTCTAAAATATCTTTTGATGAAGTCTTGCGATAATCTGCACAAGGCGAATACAATCTCTCAATAACCATATACATTATGAATACCAATATCCTGTTCGAAAAATATAACTTCTTAGTTAAAATTTGGACTTCTGATTAACATATACTCCCTTTGTCCCGATTCAACCGTCTTAGTTTGACTCGACTCGGAGTTCAAGCTTTTAAAGGGAAAGTTTTGAATCTCGTGGTCGATTAAAGATGTGTGCAGTACTTTAAATCTCGTGGTCTTAAACTTGCCACATAGAATGTTGGAATTGGAGAACTTATTAAATATAGGAAGACTCTTTTTGTGACAGTGCTAATGAACTAAAGTAAAACTATTTCTCACCAATTACTTCGATGTTGTATCAGATATCATATGGGCGATTTGCTGCAAAAACTAAAACAGAATGTGAGCTTGACTTGTTCATAATGCAAGCAGATGGCAAGAAAATAGTGGACCATAGCAAGTTGAATGGTTTGTGCTCACGTCTTCAAATGGAACTATGTCGCCCTCTTAGAGTGTCATTGATGAACCGAGGTCCTGATGCAGAATTACTGGTTGCAAACCCTGTAGAGTTATCCGGCAAGGGTCGACCGATTGTCTTTTATGACATTACACTGGCGCTCAAGATGCTTAATATTGGCATCTTTTCGGTAAGTCATCATTTATCACTCTTATGGTTTATTTCTATCCTCTGCCTTAGAGATAATCGTGTGCTAGGCTACGCTAAAAGCTGGTTTGCCAAAGGAAAAATGTCATGACGTTGATTGAACGACATACTTTTTACTTTTTTAATACAACCGATAAGAGGGTCAGTGGTACACTAGCTAATAGCCCGCCCCTCTACCCTTTTCCTCTGAAAGACCAAGTTTCCTCAGCAGCAAAGTCCGAAACCCGTGGTACCTCCAAAATTTCAAGAGTCTGAGCAACATAGCTTGGACGAAGGATATTGTTGATAATAACAATATCTCGAACCTTTCATACTGTAACCGAGCGTCTACATATGTAACTTCATTTGGCCACCTAGATAGGAAACTTAGTTGGAATGGAAATTAGAAAAAGAGGAAACGACGCTGCTTGTCTCAATGCTATGCATCTCACATGTCGTGGATTTTAAATGCACTAGTCTTGACATGTTGCTTATCGCCTTTTTTCAGGCTGAAGTAGGGAGATATCAGATTGGTGATCGAGAATGGGAAATTTACCGTGTCTTACTAGACGAAGGGAATGGCTCGGGTCCCTCGAGGAACAAGATTGTGGAAGCTGTTTGGAATATGTTGATGGGTTGGGAGTAAACAACTA</genome_strand>
        <mrna_strand>CTGGTCATACTCTCAT-AAGATTGCTTGCCAAGATCACAAAGGTCTTCTGTATGACATAATGAGGACACTGAAAGACTACAATATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATATGGGCGATTTGCTGCAAAAACTAAAACAGAATGTGAGCTTGACTTGTTCATAATGCAAGCAGATGGCAAGAAAATAGTGGACCATAGCAAGGTGAATGGTTTGTGCTCACGTCTTCAAATGGAACTATGTCGCCCTCTTAGAGTGTCATTGATGAACCGAGGTCCTGATGCAGAATTACTGGTTGCAAACCCTGTAGAGTTATCCGGCAAGGGTCGACCGATTGTCTTTTATGACATTACACTGGCGCTCAAGATGCTTAATATTGGCATCTTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAGGGAGATATCAGATTGGTGATCGAGAATGGGAAATTTACCGTGTCTTACTAGACGAAGGGAATGGCTCGGGTCCCTCGAGGAACAAGATTGTGGAAGCTGTTTGGAATATGTTGATGGGTTGGGAGTAAACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E257784" ref_strand="+" ref_description="SGN-E257784 [cLEG-39-P20]">
      <seq>aaaaagctaaaaattaagaactatggcgtctataacttgtaataattataaaaataagaagtttttatgcattattactgtttaaaatcttcttgtttctttttcttatctacaaaaaaaaatcccaaaagctaaatttcagggatttttgagtatccgttggaaaaaataatcttgattcagtcgaaccggagaagaaaatggaatgtactttggaggaacatataaccactctttcttttactggtgatgaatctatgatggagatgggttccggggattacgggtgctcgcattatagaaggagatgcaaaattagagcaccttgttgtgatgagatatttgattgcagacattgccataatgactcaaagaattctttagatgttgatccactcgaacgacacgatattcctcgtcatgatattaaaagggtcatttgctcattgtgtaatactgaacaagatgttcaacaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="46507" stop="49940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46807" g_stop="46937" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46938" i_stop="48430" i_length="1493">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.291" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48431" g_stop="48585" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="286" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48586" i_stop="48674" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48675" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="374" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48763" i_stop="48848" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48908" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="434" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48909" i_stop="49605" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49606" g_stop="49638" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="467" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49639" i_stop="49731" i_length="93">
            <donor d_prob="0.590" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49732" g_stop="49745" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="481" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E257784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46807" e_stop="46937"/>
          <exon e_start="48431" e_stop="48585"/>
          <exon e_start="48675" e_stop="48762"/>
          <exon e_start="48849" e_stop="48908"/>
          <exon e_start="49606" e_stop="49638"/>
          <exon e_start="49732" e_stop="49745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTAAAAATTAAGAACTATGGCGTCTATAACTTGTAATAATTATAAAAATAAGAAGTTTTTATGCATTATTACTGTTTAAAATCTTCTTGTTTCTTTTTCTTATCTACAAAAAAAAATCCCAAAAGGTCAGTTTTTTTTTTCTTAGTTAAAGGTTTGATTTTTAGTTCAGTTTCAATCTTTTCTTGGAATCATAGTGAAATGTCTGGTTTTTGATTCAGTTTTAATCTTTTTCTTGTTGTCTGAACTTGTATGTCTTTTTGTGATTATTAAAGATTTGATTTTTATTTCAGTTTCAATCTTTAGTGAAATATCTGGTTTCTGATTCTGTTTCAATCTTTTTCTTGTTGTCTGAACTTGTATGCCTTTTTTGTGATTATTAAAGATATGATTTTTAGTTCAGTTTCAATCTTTTGATGTATGAATTTGAAGTTATTTTGCCATAATTAGGTTGAAAATGGGGTGGGGGTGGGGTGGGGGGTCAGTTACCCATTGGAAGGAATTTCTTGATTTAGTAGAATTGGGTGAAGAGAATGAAGTTCAGTTTATTTTGTCATAGTTAAATGGCTTATTGTTAGCTTAGTTTCAGTGTTTCTGTGAGGTGTGAATTTGTGTATTTTTTCAGAACTAAAGATTTGATTTTTAGATTTGTTTTGATGTCTGGACTTGTAAATTCTTTGTCATAATTAGTTGAAATACTAGGATTTTGAGTACACATTGGGAGAAATTTTGTGATTTAGTAGAATTGATGGAGAGATAAAGATTAGGAATGAAGATATTCGGGACAAGGTCGGAGTGACTTTCGTGTTCGATGCGATGAAGAAGTGAGAGTGAGATGATTCGGGGATGTAAGGAGGAGATGCGCAAATGTCCCAGTGAGGAGGTTTGAGAGGTTATTGACTATGGCAGGTTTAATGAGAGGTAGGGGTAGGGCGAAAAATTACTGGAGAGAGGTGATTAGACATGACATCATGCATCTTTAGTTTATTGAAGACATGTCCTTAGATAGTAGTAAATGAAATGTCGCGTATTAAGATAGAAGGTTAGTAGTTAGTAGAGTATTGTCTTACTTCCTTGAGCAATAGGCTCGGTGTTAGTTTGGTGCGTATTATCTGTTTCTCCGCTCATACAGTAGTAGTAGCATTATTCTCGTTGTTTCATGTCCTGCGATTGTTGTGATTATCTGTTGTCTCACGTGCTTTTGGTTATCACATTTTTTGGCTATAGTTATTGTTCCTTGACTTATGAATGCTATGTAATGTTTTCCCTATTATTTGGTATGTCCTCTTCACTTCTTTATTTTTCTTTTTTCGAAATGCTTACTTGATCTGAGGGTCGTTCGGAAACAATCTCTCTACCTCGTGGAGGTAGCGGTAAGGTATGTGTACACACACTAGGTATGTTGTTGTTGGGTGAAGAGAATGGAGTTCAGTTTCAGTCTTTACTTGTTGTCTGAATTTGTATATCATTTGCCATAGTTAAAGGTCTGATTTTTAGCTCAGAGTCGATCTTTCTTGATATTGGGGTTTTTATATGTATTTTGTTATAGTTAAAGGTATGATTTTTTGTGCAGTTCCAAACTTTTTGATATCTGAATTTGTTTATATTTTACCATGATTAGCTAAATTTCAGGGATTTTTGAGTATCCGTTGGAAAAAATAATCTTGATTCAGTCGAACCGGAGAAGAAAATGGAATGTACTTTGGAGGAACATATAACCACTCTTTCTTTTACTGGTGATGAATCTATGATGGAGATGGGTTCCGGGGATTACGGGTATTTCTCATCTTTTTTGTTTTCTTTCTTTGAAAAATCCTTGTTTGTTTCATGATTTTGTTAATTGTTTTTCATTTTTTCTTCTTTAGGTGCTCGCATTATAGAAGGAGATGCAAAATTAGAGCACCTTGTTGTGATGAGATATTTGATTGCAGACATTGCCATAATGACTCAAAGGTAGAAATTTTTTTCATATTCAGCTGAAAAATTTTTGGTTTCCTTTTTATGTGAGAATTAATATTAGTTTTTCATTTCTTGATCAGAATTCTTTAGATGTTGATCCACTCGAACGACACGATATTCCTCGTCATGATATTAAAAGGGTTAGTTTTCAATGTTTTCCCTCTTCTGTTGTATAAAGATTCTATAGTTGTGCGTATGTTGTTCGGATTCTTCAAAATATCACCCGTGTGTGTGTTGGATCCTCCTAAAGCTATCTCGAGCAACACATCTTAAAATAGGTAATCCTCTTTATTTAGATAAGGGAAGAAGAACACAAAGGGCAGGTGATTTAGGCTTTATGTTATGTGTAACTCTCAATGAAGCTATTCTAGTTTGATTGTGTGAATAGGCAGAACATTTTTCTACTGGGAGATCCGTTTAGCCACATGAGTTTTTGTCATCCCCATAGGAAAATATAGAGAACGTCAAGTGTTTTTTATGATTGATTATGTTATATATGATACTATACTGAGATGAGCTTAAACTGTTAGACATGGTGAATGAAGAATCATATAGTCGATCCCAGCTTGCTTGAGACATATTTGATTTATATAATGTGTGAGTGGTCATGGTGTAATCGTAGTAACAAGAATTTGGTTAAGAGTGTCCAAGATTTGATATGTATGTATAAAAAGTAACTTTTGACCTATATACACAAAAAAAATTTTTGTATACGCAATACAATATTCTGACAAAGGGTGTCGGTCTATATAGCTCCACATTGTATTTGATTAAGATTCTTGTTCATACCTTTTGATGTTGATTGATTCGAGTATGCTTTCTCTATATGTTTTTCAGGTCATTTGCTCATTGTGTAATACTGAACAGGATGTGAGTTCCCTCAATTGTTAACCGCTCGATTCAAGTTTTTATAAATGTCTTTGAGTTGATATTAAATTTGCTTGGTCCTTGATTGTGCTTCAGGTTCAACAAAAATG</genome_strand>
        <mrna_strand>AAAAAGCTAAAAATTAAGAACTATGGCGTCTATAACTTGTAATAATTATAAAAATAAGAAGTTTTTATGCATTATTACTGTTTAAAATCTTCTTGTTTCTTTTTCTTATCTACAAAAAAAAATCCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATTTCAGGGATTTTTGAGTATCCGTTGGAAAAAATAATCTTGATTCAGTCGAACCGGAGAAGAAAATGGAATGTACTTTGGAGGAACATATAACCACTCTTTCTTTTACTGGTGATGAATCTATGATGGAGATGGGTTCCGGGGATTACGG.........................................................................................GTGCTCGCATTATAGAAGGAGATGCAAAATTAGAGCACCTTGTTGTGATGAGATATTTGATTGCAGACATTGCCATAATGACTCAAAG......................................................................................AATTCTTTAGATGTTGATCCACTCGAACGACACGATATTCCTCGTCATGATATTAAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGCTCATTGTGTAATACTGAACAAGAT.............................................................................................GTTCAACAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E541086" ref_strand="+" ref_description="SGN-E541086 [TUS-61-L5]">
      <seq>ttttttttttttttcttatctacaaaaaaaaatcccaaaagctaaatttcagggattttntgagtatctcgttggaaaaaataattcttgattcagttcgaaccnggagaagaaaatggaatgtactnttggaggaacatataaccacttctttcttttactggtgatgaatctatgatggagatgggttccggggattacgggtgctcgcattatagaaggagatgcaaaattagagcaccttgttgtgatgagatatttgattgcagacattgccataatgactcaaagaattctttagatgttgatccactcgaacgacacgatattcctcgtcatgatattaaaagggtcatttgctcattgtgtaatactgaacaggatgttcaacaaaaatgcatccagtgcggggtttgcatggggaagtacttttgctcaaaatgcaacttcttcgatgatgatgtctcgaagaatcaataccactgtgataaatgtggaatctgcagaacgggtggcgaggagaatttctttcactgtgacacatgtggatgctgctatacaaattcaatgaaggaatcacataaatgtatagaaagagcgatgcaccacaattgccctgtttgctttgagtatatttttgatacaacaaaaaacatcatcgtcttgccttgcggtcacacaatgcatctggaatgtgtcatgcagatggaacaacatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="46596" stop="51621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46897" g_stop="46937" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46938" i_stop="48430" i_length="1493">
            <donor d_prob="0.864" d_score="0.93"/>
            <acceptor a_prob="0.291" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48431" g_stop="48585" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="203" r_length="162" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48586" i_stop="48674" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48675" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="291" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48763" i_stop="48848" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48908" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="351" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48909" i_stop="49605" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49606" g_stop="49638" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="384" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49639" i_stop="49731" i_length="93">
            <donor d_prob="0.590" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49732" g_stop="49809" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="462" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49810" i_stop="49892" i_length="83">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49893" g_stop="49936" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="506" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49937" i_stop="50649" i_length="713">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50650" g_stop="50690" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="547" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50691" i_stop="50930" i_length="240">
            <donor d_prob="0.249" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50931" g_stop="51013" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="630" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="51014" i_stop="51230" i_length="217">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51231" g_stop="51321" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="721" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E541086" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46897" e_stop="46937"/>
          <exon e_start="48431" e_stop="48585"/>
          <exon e_start="48675" e_stop="48762"/>
          <exon e_start="48849" e_stop="48908"/>
          <exon e_start="49606" e_stop="49638"/>
          <exon e_start="49732" e_stop="49809"/>
          <exon e_start="49893" e_stop="49936"/>
          <exon e_start="50650" e_stop="50690"/>
          <exon e_start="50931" e_stop="51013"/>
          <exon e_start="51231" e_stop="51321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTTCTTTTTCTTATCTACAAAAAAAAATCCCAAAAGGTCAGTTTTTTTTTTCTTAGTTAAAGGTTTGATTTTTAGTTCAGTTTCAATCTTTTCTTGGAATCATAGTGAAATGTCTGGTTTTTGATTCAGTTTTAATCTTTTTCTTGTTGTCTGAACTTGTATGTCTTTTTGTGATTATTAAAGATTTGATTTTTATTTCAGTTTCAATCTTTAGTGAAATATCTGGTTTCTGATTCTGTTTCAATCTTTTTCTTGTTGTCTGAACTTGTATGCCTTTTTTGTGATTATTAAAGATATGATTTTTAGTTCAGTTTCAATCTTTTGATGTATGAATTTGAAGTTATTTTGCCATAATTAGGTTGAAAATGGGGTGGGGGTGGGGTGGGGGGTCAGTTACCCATTGGAAGGAATTTCTTGATTTAGTAGAATTGGGTGAAGAGAATGAAGTTCAGTTTATTTTGTCATAGTTAAATGGCTTATTGTTAGCTTAGTTTCAGTGTTTCTGTGAGGTGTGAATTTGTGTATTTTTTCAGAACTAAAGATTTGATTTTTAGATTTGTTTTGATGTCTGGACTTGTAAATTCTTTGTCATAATTAGTTGAAATACTAGGATTTTGAGTACACATTGGGAGAAATTTTGTGATTTAGTAGAATTGATGGAGAGATAAAGATTAGGAATGAAGATATTCGGGACAAGGTCGGAGTGACTTTCGTGTTCGATGCGATGAAGAAGTGAGAGTGAGATGATTCGGGGATGTAAGGAGGAGATGCGCAAATGTCCCAGTGAGGAGGTTTGAGAGGTTATTGACTATGGCAGGTTTAATGAGAGGTAGGGGTAGGGCGAAAAATTACTGGAGAGAGGTGATTAGACATGACATCATGCATCTTTAGTTTATTGAAGACATGTCCTTAGATAGTAGTAAATGAAATGTCGCGTATTAAGATAGAAGGTTAGTAGTTAGTAGAGTATTGTCTTACTTCCTTGAGCAATAGGCTCGGTGTTAGTTTGGTGCGTATTATCTGTTTCTCCGCTCATACAGTAGTAGTAGCATTATTCTCGTTGTTTCATGTCCTGCGATTGTTGTGATTATCTGTTGTCTCACGTGCTTTTGGTTATCACATTTTTTGGCTATAGTTATTGTTCCTTGACTTATGAATGCTATGTAATGTTTTCCCTATTATTTGGTATGTCCTCTTCACTTCTTTATTTTTCTTTTTTCGAAATGCTTACTTGATCTGAGGGTCGTTCGGAAACAATCTCTCTACCTCGTGGAGGTAGCGGTAAGGTATGTGTACACACACTAGGTATGTTGTTGTTGGGTGAAGAGAATGGAGTTCAGTTTCAGTCTTTACTTGTTGTCTGAATTTGTATATCATTTGCCATAGTTAAAGGTCTGATTTTTAGCTCAGAGTCGATCTTTCTTGATATTGGGGTTTTTATATGTATTTTGTTATAGTTAAAGGTATGATTTTTTGTGCAGTTCCAAACTTTTTGATATCTGAATTTGTTTATATTTTACCATGATTAGCTAAATTTCAGGGATTTT-TGAGTATC-CGTTGGAAAAAATAA-TCTTGATTCAG-TCGAACC-GGAGAAGAAAATGGAATGTACT-TTGGAGGAACATATAACCAC-TCTTTCTTTTACTGGTGATGAATCTATGATGGAGATGGGTTCCGGGGATTACGGGTATTTCTCATCTTTTTTGTTTTCTTTCTTTGAAAAATCCTTGTTTGTTTCATGATTTTGTTAATTGTTTTTCATTTTTTCTTCTTTAGGTGCTCGCATTATAGAAGGAGATGCAAAATTAGAGCACCTTGTTGTGATGAGATATTTGATTGCAGACATTGCCATAATGACTCAAAGGTAGAAATTTTTTTCATATTCAGCTGAAAAATTTTTGGTTTCCTTTTTATGTGAGAATTAATATTAGTTTTTCATTTCTTGATCAGAATTCTTTAGATGTTGATCCACTCGAACGACACGATATTCCTCGTCATGATATTAAAAGGGTTAGTTTTCAATGTTTTCCCTCTTCTGTTGTATAAAGATTCTATAGTTGTGCGTATGTTGTTCGGATTCTTCAAAATATCACCCGTGTGTGTGTTGGATCCTCCTAAAGCTATCTCGAGCAACACATCTTAAAATAGGTAATCCTCTTTATTTAGATAAGGGAAGAAGAACACAAAGGGCAGGTGATTTAGGCTTTATGTTATGTGTAACTCTCAATGAAGCTATTCTAGTTTGATTGTGTGAATAGGCAGAACATTTTTCTACTGGGAGATCCGTTTAGCCACATGAGTTTTTGTCATCCCCATAGGAAAATATAGAGAACGTCAAGTGTTTTTTATGATTGATTATGTTATATATGATACTATACTGAGATGAGCTTAAACTGTTAGACATGGTGAATGAAGAATCATATAGTCGATCCCAGCTTGCTTGAGACATATTTGATTTATATAATGTGTGAGTGGTCATGGTGTAATCGTAGTAACAAGAATTTGGTTAAGAGTGTCCAAGATTTGATATGTATGTATAAAAAGTAACTTTTGACCTATATACACAAAAAAAATTTTTGTATACGCAATACAATATTCTGACAAAGGGTGTCGGTCTATATAGCTCCACATTGTATTTGATTAAGATTCTTGTTCATACCTTTTGATGTTGATTGATTCGAGTATGCTTTCTCTATATGTTTTTCAGGTCATTTGCTCATTGTGTAATACTGAACAGGATGTGAGTTCCCTCAATTGTTAACCGCTCGATTCAAGTTTTTATAAATGTCTTTGAGTTGATATTAAATTTGCTTGGTCCTTGATTGTGCTTCAGGTTCAACAAAAATGCATCCAGTGCGGGGTTTGCATGGGGAAGTACTTTTGCTCAAAATGCAACTTCTTCGATGATGATGTAAAATTCTTTAAATAATTTGTCTACGACGCTGTTTGCTTGATATTTATACTACGCTTTAACAAGATGATTGCTATTTTTAGGTCTCGAAGAATCAATACCACTGTGATAAATGTGGAATCTGCAGGTTAATATCTTTCTCTTATACTGTACATCATTATCGGTTCTCTGATGCATTTTCCTAAATTAGGCCATATATGTGTAAACACAAAGCCAACGACATCTGAAACATAGGTTGGTCTGTAGTCACAAAATGGGCTGAAGGCAACCTTTCTTACGAAGGTGCTTCGTTTTAAGTGCATGCTAAATGATGTCCCGTTAACGAGTTCCATATGTAATTAGGATTACTTGTGGTTGATTGTAGATGGTAGGGATTAGAAATGATTCAGTCTAGTTTAGTATTCTTGTGTCTCTTTACTTTCTATATCTGCATTACAGCCATGAAAAGACATAAGCTATCTTGCTCGGACTCTTCAAAAATGTTGTTGCACCCGTGTCAACAACAACATGCCTAGTGTAATCCCACAAGTGGGGTCTGGAGAGGCTGTCTACGATTAGACACTCGGCTCAAGGAACGCAAAAACACAACACTTATGGAAAAATAGCCCGTAACAAAAACATGATAGTAATAAAACCGAGGGATAAGAGACAAAAAATAGCAATAGAAAATTAAGAATGAGAAAGATGGAAATAATAAAAATAACGAAAATTTACTACCATTTCAGTTAAACTTACATCAGTTGCATCATCTGCACATGCCGTTGTATATTTTTGGTGCGGTAACATTGTGTCTAATTATATTATTCATCATTTTCCGGTTCAAAAATATTTGAAAAACAGAACGGGTGGCGAGGAGAATTTCTTTCACTGTGACACATGTGGTGAGTGTGATGCTCAATCTTGACTTAGAACTTACTTCAGCAATAAAAGCTCTTAACAACAATGTTGCTCGGACTCTCTATAATTATTGTGGTGCGTGTCGGATCCTCCAAGAGCAGTGGAATCTTAAACATATGGGTTATCCGACATCAGTGCAGCGACATTTTTGGAGAGTTCGAGCATCACAACTTATTAGATTGTCTTCAGTTTGTTAGTGTTATGGAACATCCTTCCTTTTGCAGGATGCTGCTATACAAATTCAATGAAGGAATCACATAAATGTATAGAAAGAGCGATGCACCACAATTGCCCTGTTTGCTTTGAGGTAAGGGCAGAATTCCGATGACAACCCTGAAACGGACCTACGGTACCCCGTAAGGGGGTTATGTCAAAAAATTACACTATATTTTTCAGAATGAGATATAGCGTACGTATATTTTTTGACGTATCAAAATTATTTTTTTATGTATATATATGATAGATTTTGAACCCCCTTAGTAAAATTCCTAACTCTGCCTCGTAATTCTTTCAACTTCATGCAGTATATTTTTGATACAACAAAAAACATCATCGTCTTGCCTTGCGGTCACACAATGCATCTGGAATGTGTCATGCAGATGGAACAACATTTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTATCTACAAAAAAAAATCCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATTTCAGGGATTTTNTGAGTATCTCGTTGGAAAAAATAATTCTTGATTCAGTTCGAACCNGGAGAAGAAAATGGAATGTACTNTTGGAGGAACATATAACCACTTCTTTCTTTTACTGGTGATGAATCTATGATGGAGATGGGTTCCGGGGATTACGG.........................................................................................GTGCTCGCATTATAGAAGGAGATGCAAAATTAGAGCACCTTGTTGTGATGAGATATTTGATTGCAGACATTGCCATAATGACTCAAAG......................................................................................AATTCTTTAGATGTTGATCCACTCGAACGACACGATATTCCTCGTCATGATATTAAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGCTCATTGTGTAATACTGAACAGGAT.............................................................................................GTTCAACAAAAATGCATCCAGTGCGGGGTTTGCATGGGGAAGTACTTTTGCTCAAAATGCAACTTCTTCGATGATGAT...................................................................................GTCTCGAAGAATCAATACCACTGTGATAAATGTGGAATCTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGTGGCGAGGAGAATTTCTTTCACTGTGACACATGTG................................................................................................................................................................................................................................................GATGCTGCTATACAAATTCAATGAAGGAATCACATAAATGTATAGAAAGAGCGATGCACCACAATTGCCCTGTTTGCTTTGAG.........................................................................................................................................................................................................................TATATTTTTGATACAACAAAAAACATCATCGTCTTGCCTTGCGGTCACACAATGCATCTGGAATGTGTCATGCAGATGGAACAACATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E293348" ref_strand="+" ref_description="SGN-E293348 [cLET-18-K17]">
      <seq>aagttttacacaaatacttcattttgccatatcttcttgtattctatacgagttcaacagaattcagtagttttcctctcgaactaatatttgtattgaggagaatccactcaatacatataactaatctatctcgaatctagaaaagtagaaaggacaatgagttcagaacaagaataagtgaagaatgttcgacaactccccttgttgcaagtaatgacatgtaaaattcctcctcgatgcttaccctagtaaactcgtgaaaaataatgaagttataaatcataccaattgttgcagtcgtgactcgtgggcattgatttcatcgttgaaaagcttgtcaatgtcgcgatgaagaacctcatctaaccatttcggtaatattagagcatgaactggaccctcctcttgtctgccttgtattataggatttgcaacttggacatttatgtgctactatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="-" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="52866" stop="51804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52566" g_stop="52104" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="-" ref_id="SGN-E293348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52566" e_stop="52104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTACACAAATACTTCATTTTGCCATATCTTCTTGTATTCTATACGAGTTCAACAGAATTCAGTAGTTTTCCTCTCGAACTAATATTTGTATTGAGGAGAATCCACTCAATACATATAACTAATCTATCTCGAATCTAGAAAAGTAGAAAGGACAATGAGTTCAGAACAAGAATAAGTGAAGAATGTTCGACAACTCCCCTTGTTGCAAGTAATGACATGTAAAATTCCTCCTCGATGCTTACCCTAGTAAACTCGTGAAAAATAATGAAGTTATAAATCATACCAATTGTTGCAGTCGTGACTCGTGGGCATTGATTTCATCGTTGAAAAGCTTGTCAATGTCGCGATGAAGAACCTCATCTAACCATTTCGGTAATATTAGAGCATGAACTGGACCCTCCTCTTGTCTGCCTTGTATTATAGGATTTGCAACTTGGACATTTATGTGCTACTATATG</genome_strand>
        <mrna_strand>AAGTTTTACACAAATACTTCATTTTGCCATATCTTCTTGTATTCTATACGAGTTCAACAGAATTCAGTAGTTTTCCTCTCGAACTAATATTTGTATTGAGGAGAATCCACTCAATACATATAACTAATCTATCTCGAATCTAGAAAAGTAGAAAGGACAATGAGTTCAGAACAAGAATAAGTGAAGAATGTTCGACAACTCCCCTTGTTGCAAGTAATGACATGTAAAATTCCTCCTCGATGCTTACCCTAGTAAACTCGTGAAAAATAATGAAGTTATAAATCATACCAATTGTTGCAGTCGTGACTCGTGGGCATTGATTTCATCGTTGAAAAGCTTGTCAATGTCGCGATGAAGAACCTCATCTAACCATTTCGGTAATATTAGAGCATGAACTGGACCCTCCTCTTGTCTGCCTTGTATTATAGGATTTGCAACTTGGACATTTATGTGCTACTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E352241" ref_strand="+" ref_description="SGN-E352241 [cTOS-13-P7]">
      <seq>aacttcattatttttcacgagtttactagggtaagcatcgaggaggaattttacatgtcattacttgcaacaaggggagttgtcgaacattcttcacttattcttgttctgaactcattgtcctttctacttttctagattcgagatagattagttatatgtattgagtggattctcctcaatacaaatattagttcgagaggaaaactactgaattctgttgaactcgtatagaatacaagaagatatggcaaaatgaagtatttgtgtaaaacttcattaaacttgacaagagtgtagattttgttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="51990" stop="52901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52290" g_stop="52600" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="322"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E352241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52290" e_stop="52600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCATTATTTTTCACGAGTTTACTAGGGTAAGCATCGAGGAGGAATTTTACATGTCATTACTTGCAACAAGGGGAGTTGTCGAACATTCTTCACTTATTCTTGTTCTGAACTCATTGTCCTTTCTACTTTTCTAGATTCGAGATAGATTAGTTATATGTATTGAGTGGATTCTCCTCAATACAAATATTAGTTCGAGAGGAAAACTACTGAATTCTGTTGAACTCGTATAGAATACAAGAAGATATGGCAAAATGAAGTATTTGTGTAAAACTTCATTAAACTTGACAAGAGTGTAGATTTTGTTGCT</genome_strand>
        <mrna_strand>AACTTCATTATTTTTCACGAGTTTACTAGGGTAAGCATCGAGGAGGAATTTTACATGTCATTACTTGCAACAAGGGGAGTTGTCGAACATTCTTCACTTATTCTTGTTCTGAACTCATTGTCCTTTCTACTTTTCTAGATTCGAGATAGATTAGTTATATGTATTGAGTGGATTCTCCTCAATACAAATATTAGTTCGAGAGGAAAACTACTGAATTCTGTTGAACTCGTATAGAATACAAGAAGATATGGCAAAATGAAGTATTTGTGTAAAACTTCATTAAACTTGACAAGAGTGTAGATTTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E734280" ref_strand="+" ref_description="SGN-E734280 [LB12BA07]">
      <seq>ttcttctccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttataatctttcttcagttgttttatgtatgtgaaagtgtcattcttgtgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65989" stop="71699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66289" g_stop="66374" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="163" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="262" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71400" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="631" r_length="369" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E734280" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66289" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGTGTCATTCTTGTGTCAATCACATGAAAG</genome_strand>
        <mrna_strand>TTCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTT-AACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGTGTCATTCTTGTGTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E349829" ref_strand="+" ref_description="SGN-E349829 [cTOS-3-C20]">
      <seq>tcttctccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttataatctttcttcagttgttttatgtatgtgaaagtgtcattcttgtgtcaatcacatgaaagtgacaatttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65990" stop="71714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66290" g_stop="66374" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="163" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="262" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71422" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="653" r_length="391" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E349829" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66290" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGTGTCATTCTTGTGTCAATCACATGAAAGTGACAATTTGGAGATTCCGAAT</genome_strand>
        <mrna_strand>TCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGTGTCATTCTTGTGTCAATCACATGAAAGTGACAATTTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E289440" ref_strand="+" ref_description="SGN-E289440 [cLET-3-N13]">
      <seq>tcttctccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaagcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65990" stop="71574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66290" g_stop="66374" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="163" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="262" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71274" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="505" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E289440" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66290" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACT</genome_strand>
        <mrna_strand>TCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAAGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E213470" ref_strand="+" ref_description="SGN-E213470 [cLEC-71-P9]">
      <seq>ttctccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65992" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66292" g_stop="66374" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71340" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="569" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E213470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66292" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATA</genome_strand>
        <mrna_strand>TTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E287105" ref_strand="+" ref_description="SGN-E287105 [cLES-6-K13]">
      <seq>ccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaattttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttgcggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65996" stop="71633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66296" g_stop="66374" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="158" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="257" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71343" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="569" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E287105" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66296" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAA-TTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATC</genome_strand>
        <mrna_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTAAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E292337" ref_strand="+" ref_description="SGN-E292337 [cLET-1-C20]">
      <seq>ccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65996" stop="71612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66296" g_stop="66374" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="157" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="256" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71313" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="538" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E292337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66296" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAC</genome_strand>
        <mrna_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E372687" ref_strand="+" ref_description="SGN-E372687 [TUS-31-K13]">
      <seq>ccacacaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="65996" stop="71614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66296" g_stop="66374" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="157" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="256" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71313" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="538" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="584"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E372687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66296" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAC</genome_strand>
        <mrna_strand>CCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E338366" ref_strand="+" ref_description="SGN-E338366 [cTOE-13-N14]">
      <seq>acaaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaagcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66000" stop="71455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66300" g_stop="66374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="153" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="252" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71155" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="376" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E338366" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66300" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATA</genome_strand>
        <mrna_strand>ACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAAGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E286951" ref_strand="+" ref_description="SGN-E286951 [cLES-6-M7]">
      <seq>aaaaacaaaccagaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcacaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgagtcttttctactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66002" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66302" g_stop="66374" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="151" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="250" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71347" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="566" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E286951" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66302" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTC</genome_strand>
        <mrna_strand>AAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCACAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGAGTCTTTTCTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E299492" ref_strand="+" ref_description="SGN-E299492 [cLET-43-N10]">
      <seq>agaaatctaagaacacaaaggaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgagtcttttctactttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66013" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66313" g_stop="66374" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="239" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71346" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="554" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E299492" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66313" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTT</genome_strand>
        <mrna_strand>AGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGAGTCTTTTCTACTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E733344" ref_strand="+" ref_description="SGN-E733344 [LB04CE04]">
      <seq>cgataaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66033" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66332" g_stop="66374" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="0.95"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71346" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="535" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E733344" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66332" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTT</genome_strand>
        <mrna_strand>CGATAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E578412" ref_strand="+" ref_description="SGN-E578412 [LE12DF06]">
      <seq>gaaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66033" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66333" g_stop="66374" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="219" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71347" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="535" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E578412" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66333" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTC</genome_strand>
        <mrna_strand>GAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E295407" ref_strand="+" ref_description="SGN-E295407 [cLET-23-J17]">
      <seq>aaaaaagtaatttttttttaaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66034" stop="71614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66334" g_stop="66374" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="218" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71313" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="500" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="512"/>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E295407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66334" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAC</genome_strand>
        <mrna_strand>AAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E711510" ref_strand="+" ref_description="SGN-E711510 [FB02AG11]">
      <seq>ccatttttttttaacaaatctttaaaaaaaatggtttgtgtcccttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66043" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66341" g_stop="66374" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="210" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71347" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="526" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E711510" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66341" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTC</genome_strand>
        <mrna_strand>CCATTTTTTTTT-AACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTCCCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E712224" ref_strand="+" ref_description="SGN-E712224 [FB04BA08]">
      <seq>tgagtcgtattaaggctgcaggaattcggcacgaggatttttttttaacaaatctttaaaaaaaatggtttgtgtagcttgcttaataccactgttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66043" stop="71641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66345" g_stop="66374" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="67" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92">
            <donor d_prob="0.740" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66467" g_stop="66544" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="244" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71032" g_stop="71347" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="560" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E712224" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66345" e_stop="66374"/>
          <exon e_start="66467" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAACAAATCTTTAAAAAAAATGGTAAGAATCAAAATCTTTAGTTGAATTTCCATTAATTATGTATACCCTTTTCTTAATATGATTTTCTGTTTTTTTTGGGCAAAAAATTGCAGGTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTC</genome_strand>
        <mrna_strand>TTTTTTTTTAACAAATCTTTAAAAAAAATG............................................................................................GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E353684" ref_strand="+" ref_description="SGN-E353684 [cTOS-10-D10]">
      <seq>ttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttataatctttcttcagttgttttatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66194" stop="71664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66494" g_stop="66544" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="150" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71032" g_stop="71373" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="492" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E353684" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66494" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGT</genome_strand>
        <mrna_strand>TTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-hcPLdT/sgn_ests_tomato" ref_id="SGN-E354283" ref_strand="+" ref_description="SGN-E354283 [cTOS-16-B2]">
      <seq>ttcctagtcccgatcgttaatttattacctgttctcttccatattctcatggcgaaagtttatagaatgtgtgggaaggagtatcagaaaccagaaagcgcacctcctgcttgtccttttaaaccatcagctactaaacccaataattctgtttccggagaagaaccaagtcctggcgccccccatcctgtacctaaggcagttggagtggatgattccaagcaggactaacttttgaagttggaaactttgattgtattcagcaaattacatatcggttacgtcttccttgagactatgcaggttctcctagccattgtaaaaatgatattgtgtgctaccaatatcatcttggttataatttagtttgtggagatttggatcatataaactggaccttctacttgtaaatctatgtttaagacacatgacatctgattgtgtcttttctactttataatctttcttcagttgttttatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004H20-D8vtx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0004H20.2" temp_strand="+" temp_description="C09SLe0004H20.2  EF647609.1 htgs_phase:1 submitted_to_sgn_as:C09SLe0004H20 upload_account_name:spain">
        <position start="66194" stop="71664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66494" g_stop="66544" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66628" g_stop="66726" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="150" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71032" g_stop="71373" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="492" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004H20.2" gen_strand="+" ref_id="SGN-E354283" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004H20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66494" e_stop="66544"/>
          <exon e_start="66628" e_stop="66726"/>
          <exon e_start="71032" e_stop="71373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATGGTAAGATCCTTTAAAAAGTTGATTTATTGGTTAATTTTGATGTTTATAGTGTTAATTTGTGTTTTTTTTTTGGGATTTTATAGGCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCTGTAAGTTTTTTTTTTTCGATTATAAAGGTGTGATCTTTTGCTTAGATGGGTTGAGCCGAGGGTCTATTGGAAACATTGGAAATAGTCTCGTTAACTTTAAGGTAGGGGGTTAATTTTTTTTTTTTCATTATAAAGGCGTGATCTTTTGCTTAGATGTATTGAGCTGAGGGTATATTGGAAATAGTTTCGTTACCTTTGAGGTAGGGGGTAAGGTTTGTGGACATTTTACCCTCCCGAGAGCTCACTTTGTGGGACGATACGGGGTATGTTGTTGTTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGCTTGAAAAAATTGGAAGATGCTAAATCCGATGATTTTGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAAACTTTGGAGGTACTATAAACTTAATAACTCTGTAAGTTTGTTTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGAGTTGAGGGTCTATTGGAAATAGTCTCGTTACCTATGAGGTAGGGTGTAAGGTTTGTGGATATTTTACTCTCCCGAGAGCTCACTTTGTGGGACGACACGGGGTATGTTGTTGTTCTGTTGTTGATCTTTTGGTTGGATGTGTTTGACTTGTTTGAAAATTGGAAGATGCTAAATCCAATAATTTTTGTAAGTTATTTGATTGTAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTGAAAACTTGGGAGCTACTATAAACTTAATAATTTTGTGAGTTCGTTAGATTATAAAGGTGTGATCTTTTGCTTAGATGTGTTGATTTGCTTATAAAATTTGCGAGCTACTAAACCCAAAAATTATGTAAGTTGTTTGATTGTAAAGGTGTGATCTTTTGTTTCAAAGTGTTGATGAACAATAACTACAACAAATGTGTGATCACACAAGTGGGGGGGTGTAAATGGTAGAGTGTACACCTTACGCCTACCTTGATAGGTATAGAGAGGTTGTTTCAAGGTGTGATCTTTGTTTTGAAGTGTTGACTTGATTGAAAAACTTGTAAGCTAATAACTGGATAATTCTGTAAGTTGTTTGATTGTAAAGACATGATCTTTTGTTTCAAAGTTTTGACTTGCTTGAAAATCTTGTAATCTAATAACCCAATATTTCTGTAAGTTGTTTGATTGTGAAGGTGTGATTTTTTTAAAGTGTTGACCTGCTTGAAAAACTTGTGAGCTACTAACCCAATAATTCTGTAAGGCGTTTGATTGTGAAGGCGTGATCTTTGTTTCGAAGTGCTCACTTGCTCGCAAAACTTGTAAGCTACTAACCCAATAATTCTGTAAGTTGTTTGATTGCAAAGGTGTGATTTTTCGTATAGACGTGTTGAGTTGAAAAACATGTGAGCTACTAACCCAATAATGTTATTAAGTTTTTTGATTGTAAAGTGTGAGTTTTGTTTCAAAGTGTTGACTTGCTTGAAAGATTTGTAAGCTACTAAAACCCAATAATTGTGTAAGTAGTTTGATTATTAGGGCTTCTATAAGTGGTAGTATATAATAGCTAGGTTTGGTAAAGCCCAATAGCTTTGTTCTAAACTCGGTATTTGTGTTAAAAAATTATCAAATATGTACAAAATTAAAAATTCAGAACCGAGTTACAAACACTTGGGCCATTTCTTAGAATCCCTAACCCATAAAGTTCAAATCCTTGCTCCGCCTCTATTTTTGTTTCACAACTTGTTGGCTTGCTTGAAAAGTTTGTTCTTGTTGCGAAATATATGAACTAGATGATCTTGGTTGGAATGTTTGATTGAAATTCGCTGTTGCCTGTGTGTGTATATGTATACGCGTGCATACCTGAATAAGCTGCTCAGAGTGTCTGATTGAAATTCATTGGTGCCCACACGTGGATCCTTTCAAACAAATTGTATTGATGCTAGTTGATTGGTATAAATGTGTATGTGTGTGTTTTGGGTGGTTGAATGTATCTTTTGCTTGGATTTGTGGTGAACAAGTTGTTTGAAATTTGGATATAGGAAATGCAATATCGTTTAGCTTTCTTCAGGAAAGAGTTGTTTTCTTTGAAGTTAATGACCTCGTTGTGCCTGTAATGCTTTTTAATTTGGGGAAGCACCAGCTTATAGTGCATATGATTGTCTGAATACCCCGATGGTGTTTTACTATTTTTGATGATAGCATTTAGAACGTTGAATTTTTCTGAAGACGAATGTAAATGTGTGAAGTATGGGTTGGAAAAGCAATATGCTGAATCTTTGAGGACATTCTGATGCACATGATGCTAAAACTTGGGGGATTTAGGTGATTGTGGTTTATTCTTTTCTTCCAGATATTCATGATATTGAGTACATGAAACCAAAGTACAATGTTGAATGAAAAGTTTAACCCACAATAAAGAAAGCACCAAAAGAACTTAACTTCAATCATAGTTTTTGTTCACAGTTGAGGTTCTTGAGTATACTTTTTGTTTCATTTCTCTCATTTTAATGGTAGACAAAAATAAGAAACACGATATATATTTGGAAAGAAAAACTGGGTTGTTGTTGACTTGTTTCTTATCCAATCAGCTCTTAAAAGAATGCTGAAAATTTTCTATCAAAAATTTCCTGTTTGCCCGAGGTTCAAATGGAAACACTCTTCTCCAATGATCTATTATTTGAGTTTAAGCTTTTGCACAGTACTTGGTAATACGTTGATGAGGTTTAAGGGTTCAGTTCTTATAAAACTAAGCTGTAGATATGACCCTCAATGTGGTCGAGATATTTCTCTCGAGGAGACAGTGTAGAACTACCTTGTTCACCGAAAACTTAAACAATCCTGCATTTTGGTTCACGTCCTCCGGGACATGTTAGACCTTAACTTTTTCTGCTCCTGTTCAGTTGTGGTTCCCGTGCATTGCGTGAGCTTAGTAAACCGGGTTGCCCTCTCTTTTTTAAAAAAAAAATTGTGGATCGAAATGAAAAATAACTTCCTCATTTTTTCATTTGAGACTATCCACTGCAATGATCCTTTCGTGTTTCGTTCACATTTCACACTTTCAAGTTTGTTCCCTACACTTGTTAAAGTTTAGATCTTCTTTCCCCTGTTTATTTATGGATTTAATTCCCTGACTTCAAATTTTCTTTCCCAAATTCATATTGTAACGTTCAACAAAACCGACTGGAGTTTTGTTGCAGGAAATACTAAGCTTATGTAGAGCTGATAAATCTGTCACAAGCTAGCTACCATTGACCTTCCCAATCTCAAGGGATAAGGCTGAGACTGTGCATTGTTTATTTTCCATTAGTATTCTCTGCTTGCTCTACTACAACAGTTCACCTTGACCACGATATCATGCACCTCTAGAAAAGTTTCTGTTCGGAACTACAGTTGTTGCATTACCCCTATTGCTTTTCAACATCAGGAGGTAATACCCTACGAGATGTTTGGTAGGCACACATACAAGTTTGAAATCTATATATTGAACCAAGTCTAGTATTTAGATGGATCAAAGTTGAACTGGTTTCTAGGTCATCAAAAAGAAAAACAAATTTCATCAGCTTTGTTCTTGTCTTCTTGCTACAAATTATCATATGTTATACCTTATTCTATCTAGACATTACTTTTTCTTGGGGGTTTTGAGACAACTAGTAGTAGTGTATGTTCATTGCATAATTGAGCATAAGAAAATCAAAATATGCAGATTGGCACTTCTTTATGCCTAAAGCTGTTTTATTTCAAGGTGTTATGAGCATATGATATCAAGTGAGGAATGACTGAGTCTTCACTACTTGTTAAAGCTTTTCATAAATATGATAAAAGAGAATAACAGTTACCTCTGTCAAAAAAATTATGATAGAAGAGAATATATTTGTTCAAATCTGTATTCAAGTTTATGGAAAATAGTCTGTTTATGATGTCTATAGGCAAAGCTAGCTGAGTTTCTAGATATGCCTTTACTATGTATTGTATGCTAGTCAAAAACTCAAATATCGCTCCTTCACTTCTGTTTTCTTAACTATTTGACGTTAATGAACCTTCAGAGCTATCTGAACCTATACCCATACATTGTCACTAAATTATGGAAATAAAAAGAAGGATACTATTTTGGAATCCTGGTTAATGGTATAATTTTCCGTGACATCTTTTAAATTTTCCATTTGCTAACAGATTATTGCAGTACATGTAGTTTGAGCTTCTAAACTAGATCAATCCTCGTATTTGTGCCATTTGAACTAACGTTATATCCTTTCGTCCATCTTATTTATTGCGTTAATCAATATCTCAGTATAACAAAACACATTGTGTCTAACAGGTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGT</genome_strand>
        <mrna_strand>TTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG...................................................................................GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4091" PGL_stop="5342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4091" e_stop="4177"/>
            <exon e_start="4307" e_stop="4385"/>
            <exon e_start="4630" e_stop="4724"/>
            <exon e_start="4844" e_stop="4939"/>
            <exon e_start="5034" e_stop="5342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4091" e_stop="4177" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4178" i_stop="4306" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4307" e_stop="4385" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.986">
            <gDNA_intron_boundary i_start="4386" i_stop="4629" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4630" e_stop="4724" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="4725" i_stop="4843" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4844" e_stop="4939" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4940" i_stop="5033" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5034" e_stop="5342" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4091" stop="4177"/>
              <exon start="4307" stop="4385"/>
              <exon start="4630" stop="4724"/>
              <exon start="4844" stop="4939"/>
              <exon start="5034" stop="5342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG : CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG : GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG : CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG : ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</gDNA_template>
            <first_frame> F  N  G  N  I  D  E  P  L  E  D  G  D  T  A  L  H  I  T  C  L  Y  G  H  L  A  C  V  E  :  L  L  L  E  R  G  A  S  V  E  A  K  D  E  D  G  A  I  P  L  H  D  A  C  A  G   : G  Y  T  E  I  A  R  L  L  I  N  N  A  P  D  P  E  C  V  K  R  M  L  D  T  F  D  E  E  G  D  A  :  P  L  H  H  A  A  R  G  E  H  L  D  V  I  R  L  L  I  A  S  G  A  S  A  C  R  N  N  L  L  G  R  :  T  P  S  E  L  V  E  P  E  S  E  A  C  I  I  L  D  E  A  I  S  A  E  I  G  R  P  Y  R  S  T  *  R  K  F  G  R  S  A  I  V  D  M  F  P  L  V  L  *  V  L  V  L  Y  *  K  L  G  Y  Y  A  *  M  L  K  Y  S  L  Y  S  E  I  A  H  C  S  M  R  N  T  H  L  F  *  S  D  C  *  M  I  H  Q  L  E  L  *  N  M  E  T  L  F  V </first_frame>
            <second_frame>  L  M  E  T  L  M  N  L  *  K  M  G  T  L  L  F  I  L  L  V  C  M  A  I  W  H  V  W  S :   Y  C  *  R  E  E  L  L  W  R  L  R  M  K  M  E  Q  F  H  C  M  M  L  V  L  E  :  D  T  Q  K  *  P  V  C  *  S  T  M  H  L  T  L  N  A  *  K  G  C  W  T  P  L  M  K  K  V  M  R :   L  S  I  M  P  P  E  V  N  I  *  M  *  S  D  Y  *  *  L  Q  G  L  L  L  V  G  T  I  Y  *  E  G :   P  H  L  S  L  L  S  L  K  V  K  L  A  *  S  *  T  K  L  *  V  L  K  S  A  V  P  I  G  L  R  K  E  N  L  D  A  R  L  L  S  I  C  F  P  L  F  C  R  Y  *  C  Y  I  R  N  S  D  I  M  L  E  C  *  N  T  L  Y  I  V  R  L  H  I  A  V  *  E  I  L  I  F  F  E  A  T  V  K  *  F  I  N  *  N  Y  R  I  W  K  L  Y  L   </second_frame>
            <third_frame>   *  W  K  H  *  *  T  S  R  R  W  G  H  C  S  S  Y  Y  L  S  V  W  P  S  G  M  C  G   : A  T  V  R  E  R  S  F  C  G  G  *  G  *  R  W  S  N  S  I  A  *  C  L  C  W  R :   I  H  R  N  S  P  S  A  N  Q  Q  C  T  *  P  *  M  R  E  K  D  A  G  H  L  *  *  R  R  *  C   : A  S  P  S  C  R  Q  R  *  T  F  R  C  D  Q  I  I  D  S  F  R  G  F  C  L  *  E  Q  F  I  R  K   : D  P  I  *  A  C  *  A  *  K  *  S  L  H  N  L  R  R  S  Y  K  C  *  N  R  P  S  L  *  V  Y  V  K  K  I  W  T  L  G  Y  C  R  Y  V  S  P  C  S  V  G  T  S  V  I  L  E  T  R  I  L  C  L  N  V  K  I  L  F  I  *  *  D  C  T  L  Q  Y  E  K  Y  S  S  F  L  K  R  L  L  N  D  S  S  T  R  I  I  E  Y  G  N  F  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4091" stop="4177"/>
                    <exon start="4307" stop="4385"/>
                    <exon start="4630" stop="4724"/>
                    <exon start="4844" stop="4939"/>
                    <exon start="5034" stop="5129"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGNIDEPLEDGDTALHITCLYGHLACVELLLERGASVEAKDEDGAIPLHDACAGGYTEIARLLINNAPDPECVKRMLDTFDEEGDAPLHHAARGEHLDVIRLLIASGASACRNNLLGRTPSELVEPESEACIILDEAISAEIGRPYRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7144" PGL_stop="5565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7144" e_stop="7055"/>
            <exon e_start="6436" e_stop="6308"/>
            <exon e_start="5899" e_stop="5565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.777" acc_prob="1.000" e_score="0.933"/>
          <exon-intron don_prob="0.987" acc_prob="0.934" e_score="0.915"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="7144" e_stop="7055" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.777" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7054" i_stop="6437" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="6436" e_stop="6308" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.934">
            <gDNA_intron_boundary i_start="6307" i_stop="5900" i_length="408"/>
          </intron>
          <exon e_serial="3" e_score="0.896">
            <gDNA_exon_boundary e_start="5899" e_stop="5565" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7144" stop="7055"/>
              <exon start="6436" stop="6308"/>
              <exon start="5899" stop="5565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392072" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA : GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAG : ATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</gDNA_template>
            <first_frame> N  L  S  D  V  W  A  K  E  V  E  L  Y  S  N  N  Q  D  C  V  K  M  L  V  G  N  K  V  D  R  :  E  S  E  R  A  V  T  R  E  E  G  I  A  L  A  K  E  L  G  G  L  F  L  E  C  S  A  K  T  R  E  N  V  Q  N  C  F  E  E  L  A  L  K  :  I  M  E  V  P  S  L  L  E  E  G  S  T  V  G  K  R  N  I  L  K  Q  K  Q  E  Q  Q  T  Q  Q  G  G  G  G  C  C  S  *  *  K  K  L  C  T  R  W  C  T  Y  Q  I  C  I  C  C  F  L  F  F  F  T  V  F  I  L  L  L  L  *  K  W  L  V  V  S  C  K  V  I  D  R  C  W  S  L  T  N  V  L  V  N  I  C  Q  I  A  V  K  L  G  G  I  S  *  F  *  C  A  F  H  Q   </first_frame>
            <second_frame>  T  C  L  M  C  G  Q  K  R  W  S  C  I  V  I  I  R  I  V  *  R  C  W  L  E  I  K  L  T  E :   N  P  R  E  L  *  P  G  K  K  A  L  P  *  R  R  N  L  E  V  Y  F  L  N  V  V  L  K  L  E  K  M  C  K  T  A  L  K  S  L  P  *  R :   *  W  R  C  L  V  S  L  K  K  D  P  L  *  G  R  E  I  S  *  N  R  N  K  N  S  K  H  N  R  A  V  V  V  A  A  H  D  K  K  N  C  A  L  D  G  A  H  I  K  Y  V  Y  A  V  F  F  S  S  L  L  F  L  S  C  C  C  F  E  S  G  *  *  S  H  V  K  *  L  I  D  V  G  H  *  P  M  F  L  L  I  F  A  R  L  L  S  N  W  V  V  F  H  N  F  N  V  H  F  I  S  </second_frame>
            <third_frame>   P  V  *  C  V  G  K  R  G  G  A  V  *  *  *  S  G  L  C  K  D  A  G  W  K  *  S  *  Q   : R  I  R  E  S  C  D  Q  G  R  R  H  C  L  S  E  G  T  W  R  S  I  S  *  M  *  C  *  N  S  R  K  C  A  K  L  L  *  R  A  C  L  K   : D  N  G  G  A  *  S  P  *  R  R  I  H  C  R  E  E  K  Y  L  E  T  E  T  R  T  A  N  T  T  G  R  W  W  L  L  L  M  I  K  K  I  V  H  *  M  V  H  I  S  N  M  Y  M  L  F  S  F  L  L  Y  C  F  Y  L  A  A  A  L  K  V  V  S  S  L  M  *  S  N  *  S  M  L  V  I  D  Q  C  S  C  *  Y  L  P  D  C  C  Q  I  G  W  Y  F  I  I  L  M  C  I  S  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7144" stop="7055"/>
                    <exon start="6436" stop="6308"/>
                    <exon start="5899" stop="5786"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSDVWAKEVELYSNNQDCVKMLVGNKVDRESERAVTREEGIALAKELGGLFLECSAKTRENVQNCFEELALKIMEVPSLLEEGSTVGKRNILKQKQEQQTQQGGGGCCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8997" PGL_stop="17570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8997" e_stop="9039"/>
            <exon e_start="10030" e_stop="10209"/>
            <exon e_start="13310" e_stop="13349"/>
            <exon e_start="14323" e_stop="14379"/>
            <exon e_start="14808" e_stop="14893"/>
            <exon e_start="15654" e_stop="15791"/>
            <exon e_start="15886" e_stop="16036"/>
            <exon e_start="17096" e_stop="17490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8997" e_stop="9039" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9040" i_stop="10029" i_length="990"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10030" e_stop="10209" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10210" i_stop="13309" i_length="3100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13310" e_stop="13349" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13350" i_stop="14322" i_length="973"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14323" e_stop="14379" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.929">
            <gDNA_intron_boundary i_start="14380" i_stop="14807" i_length="428"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14808" e_stop="14893" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14894" i_stop="15653" i_length="760"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15654" e_stop="15791" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.916">
            <gDNA_intron_boundary i_start="15792" i_stop="15885" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15886" e_stop="16036" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.906">
            <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="17096" e_stop="17490" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8997" stop="9039"/>
              <exon start="10030" stop="10209"/>
              <exon start="13310" stop="13349"/>
              <exon start="14323" stop="14379"/>
              <exon start="14808" stop="14893"/>
              <exon start="15654" stop="15791"/>
              <exon start="15886" stop="15890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14808" stop="14893"/>
              <exon start="15654" stop="15791"/>
              <exon start="15886" stop="16036"/>
              <exon start="17096" stop="17241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15666" stop="15791"/>
              <exon start="15886" stop="16036"/>
              <exon start="17096" stop="17489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241888" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15669" stop="15791"/>
              <exon start="15886" stop="16036"/>
              <exon start="17096" stop="17490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392786" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15756" stop="15791"/>
              <exon start="15886" stop="16036"/>
              <exon start="17096" stop="17489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCGTGAAGAACAACGAAAAACAATTCAATTTTTTTTCACAG : ATATTTATACCTGCAAGGCCCAAGACTCATGGCGAAAATAAAACCACAAGCACTTTTGCTGCAAAGCAAAAAGAAGAAAGGGCCAAGTGGAATTAGTGTCCCTACGATTATTCTATATGGCTTAATTGTTGCTGTAATGGTGTTTTTCCTGTTTGCTACTTATAGACACTGGTCTCGAAG : GTCAATGATTCAGACACGGGATGAATTGTCAACCACTGAG : GATGAAAATACGTTTATTGAGCATAAGAGATCTGATGTCAATGGCCCTACATATGCT : TCCATAACCACCTCAAAAGGATTGATAATTGTGGAACTTTACAAGGATGGTTCTCCTGACATTGTTGATGAATTTGTTGATTTCTG : TCAGAAGGGCCACTTCAAGGGGATGCGATTTAATCGTGTAATAAAGCACTTTGTAATCCATGGTAGTAAAGTTGATAAACCTGAAGGTACAGAAGATTGGACTTCGAGGGGAAAGCATTACAGTCGACTGGACACAAG : CCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG : GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCA</gDNA_template>
            <first_frame> D  R  E  E  Q  R  K  T  I  Q  F  F  F  T   : D  I  Y  T  C  K  A  Q  D  S  W  R  K  *  N  H  K  H  F  C  C  K  A  K  R  R  K  G  Q  V  E  L  V  S  L  R  L  F  Y  M  A  *  L  L  L  *  W  C  F  S  C  L  L  L  I  D  T  G  L  E   : G  Q  *  F  R  H  G  M  N  C  Q  P  L  R :   M  K  I  R  L  L  S  I  R  D  L  M  S  M  A  L  H  M  L :   P  *  P  P  Q  K  D  *  *  L  W  N  F  T  R  M  V  L  L  T  L  L  M  N  L  L  I  S   : V  R  R  A  T  S  R  G  C  D  L  I  V  *  *  S  T  L  *  S  M  V  V  K  L  I  N  L  K  V  Q  K  I  G  L  R  G  E  S  I  T  V  D  W  T  Q   : A  *  S  T  K  H  L  C  L  V  L  Q  K  Q  I  M  K  A  K  D  L  I  C  L  *  Q  L  H  Q  F  Q  I  *  M  T  R  S  M  Y  L  G  V  *  *  R  E  R  I  S  C  R :   K  L  K  R  *  I  P  M  T  I  I  D  P  K  L  P  F  R  S  T  K  *  L  *  N  T  V  L  E  G  C  S  V  H  N  M  K  F  F  L  N  L  I  E  R  R  L  Q  H  K  C  L  L  G  V  W  I  G  N  H  H  L  L  I  L  N  P  Q  Y  *  H  D  T  T  C  Y  R  *  F  W  C  K  N  L  D  I  I  F  H  L  Y  N  F  I  F  F  F  L  F  F  P  Q  I  F  P  L  D  *  C  S  D  V  I  L  *  H  T  M  L  R  V  K  N  Y  L  E  F  T  L  M  C  </first_frame>
            <second_frame>  T  V  K  N  N  E  K  Q  F  N  F  F  S  Q  :  I  F  I  P  A  R  P  K  T  H  G  E  N  K  T  T  S  T  F  A  A  K  Q  K  E  E  R  A  K  W  N  *  C  P  Y  D  Y  S  I  W  L  N  C  C  C  N  G  V  F  P  V  C  Y  L  *  T  L  V  S  K  :  V  N  D  S  D  T  G  *  I  V  N  H  *   : G  *  K  Y  V  Y  *  A  *  E  I  *  C  Q  W  P  Y  I  C   : F  H  N  H  L  K  R  I  D  N  C  G  T  L  Q  G  W  F  S  *  H  C  *  *  I  C  *  F  L  :  S  E  G  P  L  Q  G  D  A  I  *  S  C  N  K  A  L  C  N  P  W  *  *  S  *  *  T  *  R  Y  R  R  L  D  F  E  G  K  A  L  Q  S  T  G  H  K  :  P  E  A  R  S  I  Y  A  W  Y  F  K  N  K  S  *  R  R  R  I  *  S  V  Y  N  N  C  T  N  S  R  S  E  *  Q  D  Q  C  I  W  A  C  N  K  G  R  G  Y  R  A   : G  N  *  R  G  R  Y  R  *  P  L  S  T  Q  N  S  R  S  D  Q  R  S  D  S  E  I  Q  Y  L  K  V  A  V  S  I  T  *  S  F  F  *  T  S  L  N  G  V  C  S  T  N  V  Y  L  G  S  G  L  E  T  I  I  C  *  F  *  I  L  N  I  D  M  T  R  L  A  I  D  D  S  G  V  K  I  W  I  *  Y  S  I  C  I  I  L  F  F  F  S  C  F  F  P  K  F  S  P  *  T  N  V  Q  M  L  F  Y  N  I  L  C  *  E  *  K  T  I  L  S  L  P  *  C  A </second_frame>
            <third_frame>   P  *  R  T  T  K  N  N  S  I  F  F  H  R :   Y  L  Y  L  Q  G  P  R  L  M  A  K  I  K  P  Q  A  L  L  L  Q  S  K  K  K  K  G  P  S  G  I  S  V  P  T  I  I  L  Y  G  L  I  V  A  V  M  V  F  F  L  F  A  T  Y  R  H  W  S  R  R :   S  M  I  Q  T  R  D  E  L  S  T  T  E  :  D  E  N  T  F  I  E  H  K  R  S  D  V  N  G  P  T  Y  A  :  S  I  T  T  S  K  G  L  I  I  V  E  L  Y  K  D  G  S  P  D  I  V  D  E  F  V  D  F  C :   Q  K  G  H  F  K  G  M  R  F  N  R  V  I  K  H  F  V  I  H  G  S  K  V  D  K  P  E  G  T  E  D  W  T  S  R  G  K  H  Y  S  R  L  D  T  S :   L  K  H  E  A  F  M  L  G  T  S  K  T  N  H  E  G  E  G  F  D  L  F  I  T  T  A  P  I  P  D  L  N  D  K  I  N  V  F  G  R  V  I  K  G  E  D  I  V  Q  :  E  I  E  E  V  D  T  D  D  H  Y  R  P  K  T  P  V  Q  I  N  E  V  T  L  K  Y  S  T  *  R  L  Q  C  P  *  H  E  V  F  F  K  P  H  *  T  A  S  A  A  Q  M  F  T  W  G  L  D  W  K  P  S  F  A  D  F  K  S  S  I  L  T  *  H  D  L  L  S  M  I  L  V  *  K  S  G  Y  N  I  P  F  V  *  F  Y  F  F  F  L  V  F  S  P  N  F  P  L  R  L  M  F  R  C  Y  F  I  T  Y  Y  V  K  S  K  K  L  S  *  V  Y  P  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9005" stop="9039"/>
                    <exon start="10030" stop="10209"/>
                    <exon start="13310" stop="13349"/>
                    <exon start="14323" stop="14379"/>
                    <exon start="14808" stop="14893"/>
                    <exon start="15654" stop="15791"/>
                    <exon start="15886" stop="16036"/>
                    <exon start="17096" stop="17182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTTKNNSIFFHRYLYLQGPRLMAKIKPQALLLQSKKKKGPSGISVPTIILYGLIVAVMVFFLFATYRHWSRRSMIQTRDELSTTEDENTFIEHKRSDVNGPTYASITTSKGLIIVELYKDGSPDIVDEFVDFCQKGHFKGMRFNRVIKHFVIHGSKVDKPEGTEDWTSRGKHYSRLDTSLKHEAFMLGTSKTNHEGEGFDLFITTAPIPDLNDKINVFGRVIKGEDIVQEIEEVDTDDHYRPKTPVQINEVTLKYST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15873" e_stop="16036"/>
            <exon e_start="17096" e_stop="17570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15873" e_stop="16036" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.906">
            <gDNA_intron_boundary i_start="16037" i_stop="17095" i_length="1059"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="17096" e_stop="17570" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15873" stop="16036"/>
              <exon start="17096" stop="17570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15873" stop="16036"/>
              <exon start="17096" stop="17483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15874" stop="16036"/>
              <exon start="17096" stop="17515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTATATTCAGCCTGAAGCACGAAGCATTTATGCTTGGTACTTCAAAAACAAATCATGAAGGCGAAGGATTTGATCTGTTTATAACAACTGCACCAATTCCAGATCTGAATGACAAGATCAATGTATTTGGGCGTGTAATAAAGGGAGAGGATATCGTGCAG : GAAATTGAAGAGGTAGATACCGATGACCATTATCGACCCAAAACTCCCGTTCAGATCAACGAAGTGACTCTGAAATACAGTACTTGAAGGTTGCAGTGTCCATAACATGAAGTTTTTTTTAAACCTCATTGAACGGCGTCTGCAGCACAAATGTTTACTTGGGGTCTGGATTGGAAACCATCATTTGCTGATTTTAAATCCTCAATATTGACATGACACGACTTGCTATCGATGATTCTGGTGTAAAAATCTGGATATAATATTCCATTTGTATAATTTTATTTTTTTTTTCTTGTTTTTTCCCCAAATTTTCCCCTTAGACTAATGTTCAGATGTTATTTTATAACATACTATGTTAAGAGTAAAAAACTATCTTGAGTTTACCCTAATGTGCAGAGTACAACACATTGAATGAGTTTTCATCTAAGGGCCATTATAGACCCCTTCTGAATGACAATATAACCACTTCTGTTTA</gDNA_template>
            <first_frame> S  L  Y  S  A  *  S  T  K  H  L  C  L  V  L  Q  K  Q  I  M  K  A  K  D  L  I  C  L  *  Q  L  H  Q  F  Q  I  *  M  T  R  S  M  Y  L  G  V  *  *  R  E  R  I  S  C  R :   K  L  K  R  *  I  P  M  T  I  I  D  P  K  L  P  F  R  S  T  K  *  L  *  N  T  V  L  E  G  C  S  V  H  N  M  K  F  F  L  N  L  I  E  R  R  L  Q  H  K  C  L  L  G  V  W  I  G  N  H  H  L  L  I  L  N  P  Q  Y  *  H  D  T  T  C  Y  R  *  F  W  C  K  N  L  D  I  I  F  H  L  Y  N  F  I  F  F  F  L  F  F  P  Q  I  F  P  L  D  *  C  S  D  V  I  L  *  H  T  M  L  R  V  K  N  Y  L  E  F  T  L  M  C  R  V  Q  H  I  E  *  V  F  I  *  G  P  L  *  T  P  S  E  *  Q  Y  N  H  F  C  L </first_frame>
            <second_frame>  L  Y  I  Q  P  E  A  R  S  I  Y  A  W  Y  F  K  N  K  S  *  R  R  R  I  *  S  V  Y  N  N  C  T  N  S  R  S  E  *  Q  D  Q  C  I  W  A  C  N  K  G  R  G  Y  R  A   : G  N  *  R  G  R  Y  R  *  P  L  S  T  Q  N  S  R  S  D  Q  R  S  D  S  E  I  Q  Y  L  K  V  A  V  S  I  T  *  S  F  F  *  T  S  L  N  G  V  C  S  T  N  V  Y  L  G  S  G  L  E  T  I  I  C  *  F  *  I  L  N  I  D  M  T  R  L  A  I  D  D  S  G  V  K  I  W  I  *  Y  S  I  C  I  I  L  F  F  F  S  C  F  F  P  K  F  S  P  *  T  N  V  Q  M  L  F  Y  N  I  L  C  *  E  *  K  T  I  L  S  L  P  *  C  A  E  Y  N  T  L  N  E  F  S  S  K  G  H  Y  R  P  L  L  N  D  N  I  T  T  S  V   </second_frame>
            <third_frame>   S  I  F  S  L  K  H  E  A  F  M  L  G  T  S  K  T  N  H  E  G  E  G  F  D  L  F  I  T  T  A  P  I  P  D  L  N  D  K  I  N  V  F  G  R  V  I  K  G  E  D  I  V  Q  :  E  I  E  E  V  D  T  D  D  H  Y  R  P  K  T  P  V  Q  I  N  E  V  T  L  K  Y  S  T  *  R  L  Q  C  P  *  H  E  V  F  F  K  P  H  *  T  A  S  A  A  Q  M  F  T  W  G  L  D  W  K  P  S  F  A  D  F  K  S  S  I  L  T  *  H  D  L  L  S  M  I  L  V  *  K  S  G  Y  N  I  P  F  V  *  F  Y  F  F  F  L  V  F  S  P  N  F  P  L  R  L  M  F  R  C  Y  F  I  T  Y  Y  V  K  S  K  K  L  S  *  V  Y  P  N  V  Q  S  T  T  H  *  M  S  F  H  L  R  A  I  I  D  P  F  *  M  T  I  *  P  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15875" stop="16036"/>
                    <exon start="17096" stop="17182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFSLKHEAFMLGTSKTNHEGEGFDLFITTAPIPDLNDKINVFGRVIKGEDIVQEIEEVDTDDHYRPKTPVQINEVTLKYST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17578" PGL_stop="16853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17578" e_stop="17116"/>
            <exon e_start="16860" e_stop="16853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.810" acc_prob="0.997" e_score="0.978"/>
          <exon-only e_score="0.375"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="17578" e_stop="17116" e_length="463"/>
          </exon>
          <intron i_serial="1" don_prob="0.810" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17115" i_stop="16861" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="0.375">
            <gDNA_exon_boundary e_start="16860" e_stop="16853" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17578" stop="17116"/>
              <exon start="16860" stop="16853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17578" stop="17123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATTAAACAGAAGTGGTTATATTGTCATTCAGAAGGGGTCTATAATGGCCCTTAGATGAAAACTCATTCAATGTGTTGTACTCTGCACATTAGGGTAAACTCAAGATAGTTTTTTACTCTTAACATAGTATGTTATAAAATAACATCTGAACATTAGTCTAAGGGGAAAATTTGGGGAAAAAACAAGAAAAAAAAAATAAAATTATACAAATGGAATATTATATCCAGATTTTTACACCAGAATCATCGATAGCAAGTCGTGTCATGTCAATATTGAGGATTTAAAATCAGCAAATGATGGTTTCCAATCCAGACCCCAAGTAAACATTTGTGCTGCAGACGCCGTTCAATGAGGTTTAAAAAAAACTTCATGTTATGGACACTGCAACCTTCAAGTACTGTATTTCAGAGTCACTTCGTTGATCTGAACGGGAGTTTTGGGTCGATAATGGTCATCG : AGCTGGAT</gDNA_template>
            <first_frame> R  K  I  K  Q  K  W  L  Y  C  H  S  E  G  V  Y  N  G  P  *  M  K  T  H  S  M  C  C  T  L  H  I  R  V  N  S  R  *  F  F  T  L  N  I  V  C  Y  K  I  T  S  E  H  *  S  K  G  K  I  W  G  K  N  K  K  K  K  I  K  L  Y  K  W  N  I  I  S  R  F  L  H  Q  N  H  R  *  Q  V  V  S  C  Q  Y  *  G  F  K  I  S  K  *  W  F  P  I  Q  T  P  S  K  H  L  C  C  R  R  R  S  M  R  F  K  K  N  F  M  L  W  T  L  Q  P  S  S  T  V  F  Q  S  H  F  V  D  L  N  G  S  F  G  S  I  M  V  I   : E  L  D </first_frame>
            <second_frame>  E  K  L  N  R  S  G  Y  I  V  I  Q  K  G  S  I  M  A  L  R  *  K  L  I  Q  C  V  V  L  C  T  L  G  *  T  Q  D  S  F  L  L  L  T  *  Y  V  I  K  *  H  L  N  I  S  L  R  G  K  F  G  E  K  T  R  K  K  K  *  N  Y  T  N  G  I  L  Y  P  D  F  Y  T  R  I  I  D  S  K  S  C  H  V  N  I  E  D  L  K  S  A  N  D  G  F  Q  S  R  P  Q  V  N  I  C  A  A  D  A  V  Q  *  G  L  K  K  T  S  C  Y  G  H  C  N  L  Q  V  L  Y  F  R  V  T  S  L  I  *  T  G  V  L  G  R  *  W  S  S  :  S  W   </second_frame>
            <third_frame>   K  N  *  T  E  V  V  I  L  S  F  R  R  G  L  *  W  P  L  D  E  N  S  F  N  V  L  Y  S  A  H  *  G  K  L  K  I  V  F  Y  S  *  H  S  M  L  *  N  N  I  *  T  L  V  *  G  E  N  L  G  K  K  Q  E  K  K  N  K  I  I  Q  M  E  Y  Y  I  Q  I  F  T  P  E  S  S  I  A  S  R  V  M  S  I  L  R  I  *  N  Q  Q  M  M  V  S  N  P  D  P  K  *  T  F  V  L  Q  T  P  F  N  E  V  *  K  K  L  H  V  M  D  T  A  T  F  K  Y  C  I  S  E  S  L  R  *  S  E  R  E  F  W  V  D  N  G  H  R :   A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004H20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23759" PGL_stop="24350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23759" e_stop="24350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="23759" e_stop="24350" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23759" stop="24350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372593" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAGCTCGGGCCTCTGACCTGGAAAAGCAGCGAGATTTAAGATGGCAGAGATTAGCAGCTGCTGCTGGACAAGGAGGGTAAAGTACACGTTGATCGTTATTCCTGATATGTTAAATGCAGGATTAGACACACCAAATCAACCATGTTCTTCTGTTATAGTGGTATTCAGTTTTCTCCTTTTTTTGTTCTTCTGTTTTCAATACGCCGGATCGTTGAAGAGGATGACAGGCATTGCAGCAGGGTGTAATTCAAGTATGTATTTCGATAATCACTAGTCGTGTGCTGCTGCTCAAGAATGGTTTGTGGAAGTATGATGTTGTAATTTGTTCTATATTTTTCGTCAGGAGAATTTTTTTTTTCTTGCAATGAACTCGATGGAGCAAGAAATTACGTTAATTTATACACTAAATCAGGAGTGGGAGAGCAAAAGCCGAAGAATAGAGGACTTCCTCCAGGCTTTTTATTCTGGGCATTTTTCTTTTGTTCCTTCTCTTGAAAGAAGTATTTTGGTTTTTGTTTCTCTTTTATGTTTGTATAGCTTGTATGGTTTTTGGCAGTTCTTGAAAGTGTTATATAAGAGAACCTCCTTT</gDNA_template>
            <first_frame> K  Q  L  G  P  L  T  W  K  S  S  E  I  *  D  G  R  D  *  Q  L  L  L  D  K  E  G  K  V  H  V  D  R  Y  S  *  Y  V  K  C  R  I  R  H  T  K  S  T  M  F  F  C  Y  S  G  I  Q  F  S  P  F  F  V  L  L  F  S  I  R  R  I  V  E  E  D  D  R  H  C  S  R  V  *  F  K  Y  V  F  R  *  S  L  V  V  C  C  C  S  R  M  V  C  G  S  M  M  L  *  F  V  L  Y  F  S  S  G  E  F  F  F  S  C  N  E  L  D  G  A  R  N  Y  V  N  L  Y  T  K  S  G  V  G  E  Q  K  P  K  N  R  G  L  P  P  G  F  L  F  W  A  F  F  F  C  S  F  S  *  K  K  Y  F  G  F  C  F  S  F  M  F  V  *  L  V  W  F  L  A  V  L  E  S  V  I  *  E  N  L  L  </first_frame>
            <second_frame>  S  S  S  G  L  *  P  G  K  A  A  R  F  K  M  A  E  I  S  S  C  C  W  T  R  R  V  K  Y  T  L  I  V  I  P  D  M  L  N  A  G  L  D  T  P  N  Q  P  C  S  S  V  I  V  V  F  S  F  L  L  F  L  F  F  C  F  Q  Y  A  G  S  L  K  R  M  T  G  I  A  A  G  C  N  S  S  M  Y  F  D  N  H  *  S  C  A  A  A  Q  E  W  F  V  E  V  *  C  C  N  L  F  Y  I  F  R  Q  E  N  F  F  F  L  A  M  N  S  M  E  Q  E  I  T  L  I  Y  T  L  N  Q  E  W  E  S  K  S  R  R  I  E  D  F  L  Q  A  F  Y  S  G  H  F  S  F  V  P  S  L  E  R  S  I  L  V  F  V  S  L  L  C  L  Y  S  L  Y  G  F  W  Q  F  L  K  V  L  Y  K  R  T  S  F </second_frame>
            <third_frame>   A  A  R  A  S  D  L  E  K  Q  R  D  L  R  W  Q  R  L  A  A  A  A  G  Q  G  G  *  S  T  R  *  S  L  F  L  I  C  *  M  Q  D  *  T  H  Q  I  N  H  V  L  L  L  *  W  Y  S  V  F  S  F  F  C  S  S  V  F  N  T  P  D  R  *  R  G  *  Q  A  L  Q  Q  G  V  I  Q  V  C  I  S  I  I  T  S  R  V  L  L  L  K  N  G  L  W  K  Y  D  V  V  I  C  S  I  F  F  V  R  R  I  F  F  F  L  Q  *  T  R  W  S  K  K  L  R  *  F  I  H  *  I  R  S  G  R  A  K  A  E  E  *  R  T  S  S  R  L  F  I  L  G  I  F  L  L  F  L  L  L  K  E  V  F  W  F  L  F  L  F  Y  V  C  I  A  C  M  V  F  G  S  S  *  K  C  Y  I  R  E  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24075" stop="24350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCNLFYIFRQENFFFLAMNSMEQEITLIYTLNQEWESKSRRIEDFLQAFYSGHFSFVPSLERSILVFVSLLCLYSLYGFWQFLKVLYKRTSF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23778" stop="24035"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKAARFKMAEISSCCWTRRVKYTLIVIPDMLNAGLDTPNQPCSSVIVVFSFLLFLFFCFQYAGSLKRMTGIAAGCNSSMYFDNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26908" PGL_stop="26653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26908" e_stop="26653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26908" e_stop="26653" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26908" stop="26653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATCATGTTAGTTATCATCATACAAAATAAGATCAATTTCGCGAGGTTTGAGTATGCAGGAAGTGCAGCCGTTGTGTTGATTTTGCTCTTTGCCCCGTTGATCATCGTGTTTCAAGAAGAAGTTAAGCTTTGGAACGCTAAGCAACAAGCCCTGGATGAGCCTCGATTGAAAGTTGTTAGCGAAAATCCGCCTTCAGTAGAGCTGACTCAGCCCCAGAAGCTAGCTTTAAGTGAATCTGAGGAAAGTTTGACAT</gDNA_template>
            <first_frame> F  I  M  L  V  I  I  I  Q  N  K  I  N  F  A  R  F  E  Y  A  G  S  A  A  V  V  L  I  L  L  F  A  P  L  I  I  V  F  Q  E  E  V  K  L  W  N  A  K  Q  Q  A  L  D  E  P  R  L  K  V  V  S  E  N  P  P  S  V  E  L  T  Q  P  Q  K  L  A  L  S  E  S  E  E  S  L  T  </first_frame>
            <second_frame>  L  S  C  *  L  S  S  Y  K  I  R  S  I  S  R  G  L  S  M  Q  E  V  Q  P  L  C  *  F  C  S  L  P  R  *  S  S  C  F  K  K  K  L  S  F  G  T  L  S  N  K  P  W  M  S  L  D  *  K  L  L  A  K  I  R  L  Q  *  S  *  L  S  P  R  S  *  L  *  V  N  L  R  K  V  *  H </second_frame>
            <third_frame>   Y  H  V  S  Y  H  H  T  K  *  D  Q  F  R  E  V  *  V  C  R  K  C  S  R  C  V  D  F  A  L  C  P  V  D  H  R  V  S  R  R  S  *  A  L  E  R  *  A  T  S  P  G  *  A  S  I  E  S  C  *  R  K  S  A  F  S  R  A  D  S  A  P  E  A  S  F  K  *  I  *  G  K  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26908" stop="26654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIMLVIIIQNKINFARFEYAGSAAVVLILLFAPLIIVFQEEVKLWNAKQQALDEPRLKVVSENPPSVELTQPQKLALSESEESLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29309" PGL_stop="28988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29309" e_stop="28988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="29309" e_stop="28988" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29309" stop="28988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29309" stop="29019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATATAACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTGTAACACGAAGATATACGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  F  I  A  K  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  Y  N  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  F  L  K  *  N  V  C  K  L  Y  N  *  V  C  N  T  K  I  Y  V  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  L  *  Q  K  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  I  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  F  *  S  K  M  F  V  N  C  I  I  K  C  V  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  *  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  R  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004H20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="39801" PGL_stop="38276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39801" e_stop="39713"/>
            <exon e_start="39306" e_stop="39022"/>
            <exon e_start="38517" e_stop="38276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.989"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="39801" e_stop="39713" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39712" i_stop="39307" i_length="406"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39306" e_stop="39022" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="39021" i_stop="38518" i_length="504"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="38517" e_stop="38276" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39801" stop="39713"/>
              <exon start="39306" stop="39022"/>
              <exon start="38517" stop="38373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39306" stop="39022"/>
              <exon start="38517" stop="38276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTCATACTCTCATCAAGATTGCTTGCCAAGATCACAAAGGTCTTCTGTATGACATAATGAGGACACTGAAAGACTACAATATTCAG : ATATCATATGGGCGATTTGCTGCAAAAACTAAAACAGAATGTGAGCTTGACTTGTTCATAATGCAAGCAGATGGCAAGAAAATAGTGGACCATAGCAAGTTGAATGGTTTGTGCTCACGTCTTCAAATGGAACTATGTCGCCCTCTTAGAGTGTCATTGATGAACCGAGGTCCTGATGCAGAATTACTGGTTGCAAACCCTGTAGAGTTATCCGGCAAGGGTCGACCGATTGTCTTTTATGACATTACACTGGCGCTCAAGATGCTTAATATTGGCATCTTTTCG : GCTGAAGTAGGGAGATATCAGATTGGTGATCGAGAATGGGAAATTTACCGTGTCTTACTAGACGAAGGGAATGGCTCGGGTCCCTCGAGGAACAAGATTGTGGAAGCTGTTTGGAATATGTTGATGGGTTGGGAGTAAACAACTAGTGAATGTACAGTTCCTGTGTTCATTGCTAAAAGGCCTCATTTGACTCAGTGTATATACAGTGTATATAAGTGTATTAATGTAGAGGTAAAAAAAAA</gDNA_template>
            <first_frame> L  V  I  L  S  S  R  L  L  A  K  I  T  K  V  F  C  M  T  *  *  G  H  *  K  T  T  I  F  R :   Y  H  M  G  D  L  L  Q  K  L  K  Q  N  V  S  L  T  C  S  *  C  K  Q  M  A  R  K  *  W  T  I  A  S  *  M  V  C  A  H  V  F  K  W  N  Y  V  A  L  L  E  C  H  *  *  T  E  V  L  M  Q  N  Y  W  L  Q  T  L  *  S  Y  P  A  R  V  D  R  L  S  F  M  T  L  H  W  R  S  R  C  L  I  L  A  S  F  R :   L  K  *  G  D  I  R  L  V  I  E  N  G  K  F  T  V  S  Y  *  T  K  G  M  A  R  V  P  R  G  T  R  L  W  K  L  F  G  I  C  *  W  V  G  S  K  Q  L  V  N  V  Q  F  L  C  S  L  L  K  G  L  I  *  L  S  V  Y  T  V  Y  I  S  V  L  M  *  R  *  K  K  </first_frame>
            <second_frame>  W  S  Y  S  H  Q  D  C  L  P  R  S  Q  R  S  S  V  *  H  N  E  D  T  E  R  L  Q  Y  S   : D  I  I  W  A  I  C  C  K  N  *  N  R  M  *  A  *  L  V  H  N  A  S  R  W  Q  E  N  S  G  P  *  Q  V  E  W  F  V  L  T  S  S  N  G  T  M  S  P  S  *  S  V  I  D  E  P  R  S  *  C  R  I  T  G  C  K  P  C  R  V  I  R  Q  G  S  T  D  C  L  L  *  H  Y  T  G  A  Q  D  A  *  Y  W  H  L  F   : G  *  S  R  E  I  S  D  W  *  S  R  M  G  N  L  P  C  L  T  R  R  R  E  W  L  G  S  L  E  E  Q  D  C  G  S  C  L  E  Y  V  D  G  L  G  V  N  N  *  *  M  Y  S  S  C  V  H  C  *  K  A  S  F  D  S  V  Y  I  Q  C  I  *  V  Y  *  C  R  G  K  K  K </second_frame>
            <third_frame>   G  H  T  L  I  K  I  A  C  Q  D  H  K  G  L  L  Y  D  I  M  R  T  L  K  D  Y  N  I  Q  :  I  S  Y  G  R  F  A  A  K  T  K  T  E  C  E  L  D  L  F  I  M  Q  A  D  G  K  K  I  V  D  H  S  K  L  N  G  L  C  S  R  L  Q  M  E  L  C  R  P  L  R  V  S  L  M  N  R  G  P  D  A  E  L  L  V  A  N  P  V  E  L  S  G  K  G  R  P  I  V  F  Y  D  I  T  L  A  L  K  M  L  N  I  G  I  F  S  :  A  E  V  G  R  Y  Q  I  G  D  R  E  W  E  I  Y  R  V  L  L  D  E  G  N  G  S  G  P  S  R  N  K  I  V  E  A  V  W  N  M  L  M  G  W  E  *  T  T  S  E  C  T  V  P  V  F  I  A  K  R  P  H  L  T  Q  C  I  Y  S  V  Y  K  C  I  N  V  E  V  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39799" stop="39713"/>
                    <exon start="39306" stop="39022"/>
                    <exon start="38517" stop="38380"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHTLIKIACQDHKGLLYDIMRTLKDYNIQISYGRFAAKTKTECELDLFIMQADGKKIVDHSKLNGLCSRLQMELCRPLRVSLMNRGPDAELLVANPVELSGKGRPIVFYDITLALKMLNIGIFSAEVGRYQIGDREWEIYRVLLDEGNGSGPSRNKIVEAVWNMLMGWE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="46807" PGL_stop="51321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46807" e_stop="46937"/>
            <exon e_start="48431" e_stop="48585"/>
            <exon e_start="48675" e_stop="48762"/>
            <exon e_start="48849" e_stop="48908"/>
            <exon e_start="49606" e_stop="49638"/>
            <exon e_start="49732" e_stop="49809"/>
            <exon e_start="49893" e_stop="49936"/>
            <exon e_start="50650" e_stop="50690"/>
            <exon e_start="50931" e_stop="51013"/>
            <exon e_start="51231" e_stop="51321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="0.291" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.723" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.249" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46807" e_stop="46937" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="0.291">
            <gDNA_intron_boundary i_start="46938" i_stop="48430" i_length="1493"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48431" e_stop="48585" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48586" i_stop="48674" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48675" e_stop="48762" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="48763" i_stop="48848" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48849" e_stop="48908" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48909" i_stop="49605" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49606" e_stop="49638" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.590" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49639" i_stop="49731" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49732" e_stop="49809" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.723" acc_prob="0.930">
            <gDNA_intron_boundary i_start="49810" i_stop="49892" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49893" e_stop="49936" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.946">
            <gDNA_intron_boundary i_start="49937" i_stop="50649" i_length="713"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50650" e_stop="50690" e_length="41"/>
          </exon>
          <intron i_serial="8" don_prob="0.249" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50691" i_stop="50930" i_length="240"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="50931" e_stop="51013" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="51014" i_stop="51230" i_length="217"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51231" e_stop="51321" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46807" stop="46937"/>
              <exon start="48431" stop="48585"/>
              <exon start="48675" stop="48762"/>
              <exon start="48849" stop="48908"/>
              <exon start="49606" stop="49638"/>
              <exon start="49732" stop="49745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46897" stop="46937"/>
              <exon start="48431" stop="48585"/>
              <exon start="48675" stop="48762"/>
              <exon start="48849" stop="48908"/>
              <exon start="49606" stop="49638"/>
              <exon start="49732" stop="49809"/>
              <exon start="49893" stop="49936"/>
              <exon start="50650" stop="50690"/>
              <exon start="50931" stop="51013"/>
              <exon start="51231" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGCTAAAAATTAAGAACTATGGCGTCTATAACTTGTAATAATTATAAAAATAAGAAGTTTTTATGCATTATTACTGTTTAAAATCTTCTTGTTTCTTTTTCTTATCTACAAAAAAAAATCCCAAAAG : CTAAATTTCAGGGATTTTTGAGTATCCGTTGGAAAAAATAATCTTGATTCAGTCGAACCGGAGAAGAAAATGGAATGTACTTTGGAGGAACATATAACCACTCTTTCTTTTACTGGTGATGAATCTATGATGGAGATGGGTTCCGGGGATTACGG : GTGCTCGCATTATAGAAGGAGATGCAAAATTAGAGCACCTTGTTGTGATGAGATATTTGATTGCAGACATTGCCATAATGACTCAAAG : AATTCTTTAGATGTTGATCCACTCGAACGACACGATATTCCTCGTCATGATATTAAAAGG : GTCATTTGCTCATTGTGTAATACTGAACAGGAT : GTTCAACAAAAATGCATCCAGTGCGGGGTTTGCATGGGGAAGTACTTTTGCTCAAAATGCAACTTCTTCGATGATGAT : GTCTCGAAGAATCAATACCACTGTGATAAATGTGGAATCTGCAG : AACGGGTGGCGAGGAGAATTTCTTTCACTGTGACACATGTG : GATGCTGCTATACAAATTCAATGAAGGAATCACATAAATGTATAGAAAGAGCGATGCACCACAATTGCCCTGTTTGCTTTGAG : TATATTTTTGATACAACAAAAAACATCATCGTCTTGCCTTGCGGTCACACAATGCATCTGGAATGTGTCATGCAGATGGAACAACATTTCC</gDNA_template>
            <first_frame> K  K  L  K  I  K  N  Y  G  V  Y  N  L  *  *  L  *  K  *  E  V  F  M  H  Y  Y  C  L  K  S  S  C  F  F  F  L  S  T  K  K  N  P  K  S :   *  I  S  G  I  F  E  Y  P  L  E  K  I  I  L  I  Q  S  N  R  R  R  K  W  N  V  L  W  R  N  I  *  P  L  F  L  L  L  V  M  N  L  *  W  R  W  V  P  G  I  T   : G  A  R  I  I  E  G  D  A  K  L  E  H  L  V  V  M  R  Y  L  I  A  D  I  A  I  M  T  Q  R :   I  L  *  M  L  I  H  S  N  D  T  I  F  L  V  M  I  L  K  G :   S  F  A  H  C  V  I  L  N  R  M :   F  N  K  N  A  S  S  A  G  F  A  W  G  S  T  F  A  Q  N  A  T  S  S  M  M  M :   S  R  R  I  N  T  T  V  I  N  V  E  S  A   : E  R  V  A  R  R  I  S  F  T  V  T  H  V  :  D  A  A  I  Q  I  Q  *  R  N  H  I  N  V  *  K  E  R  C  T  T  I  A  L  F  A  L  S :   I  F  L  I  Q  Q  K  T  S  S  S  C  L  A  V  T  Q  C  I  W  N  V  S  C  R  W  N  N  I  S </first_frame>
            <second_frame>  K  S  *  K  L  R  T  M  A  S  I  T  C  N  N  Y  K  N  K  K  F  L  C  I  I  T  V  *  N  L  L  V  S  F  S  Y  L  Q  K  K  I  P  K   : A  K  F  Q  G  F  L  S  I  R  W  K  K  *  S  *  F  S  R  T  G  E  E  N  G  M  Y  F  G  G  T  Y  N  H  S  F  F  Y  W  *  *  I  Y  D  G  D  G  F  R  G  L  R  :  V  L  A  L  *  K  E  M  Q  N  *  S  T  L  L  *  *  D  I  *  L  Q  T  L  P  *  *  L  K   : E  F  F  R  C  *  S  T  R  T  T  R  Y  S  S  S  *  Y  *  K   : G  H  L  L  I  V  *  Y  *  T  G   : C  S  T  K  M  H  P  V  R  G  L  H  G  E  V  L  L  L  K  M  Q  L  L  R  *  *   : C  L  E  E  S  I  P  L  *  *  M  W  N  L  Q  :  N  G  W  R  G  E  F  L  S  L  *  H  M  W :   M  L  L  Y  K  F  N  E  G  I  T  *  M  Y  R  K  S  D  A  P  Q  L  P  C  L  L  *   : V  Y  F  *  Y  N  K  K  H  H  R  L  A  L  R  S  H  N  A  S  G  M  C  H  A  D  G  T  T  F   </second_frame>
            <third_frame>   K  A  K  N  *  E  L  W  R  L  *  L  V  I  I  I  K  I  R  S  F  Y  A  L  L  L  F  K  I  F  L  F  L  F  L  I  Y  K  K  K  S  Q  K  :  L  N  F  R  D  F  *  V  S  V  G  K  N  N  L  D  S  V  E  P  E  K  K  M  E  C  T  L  E  E  H  I  T  T  L  S  F  T  G  D  E  S  M  M  E  M  G  S  G  D  Y  G :   C  S  H  Y  R  R  R  C  K  I  R  A  P  C  C  D  E  I  F  D  C  R  H  C  H  N  D  S  K  :  N  S  L  D  V  D  P  L  E  R  H  D  I  P  R  H  D  I  K  R  :  V  I  C  S  L  C  N  T  E  Q  D  :  V  Q  Q  K  C  I  Q  C  G  V  C  M  G  K  Y  F  C  S  K  C  N  F  F  D  D  D  :  V  S  K  N  Q  Y  H  C  D  K  C  G  I  C  R :   T  G  G  E  E  N  F  F  H  C  D  T  C   : G  C  C  Y  T  N  S  M  K  E  S  H  K  C  I  E  R  A  M  H  H  N  C  P  V  C  F  E  :  Y  I  F  D  T  T  K  N  I  I  V  L  P  C  G  H  T  M  H  L  E  C  V  M  Q  M  E  Q  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48452" stop="48585"/>
                    <exon start="48675" stop="48762"/>
                    <exon start="48849" stop="48908"/>
                    <exon start="49606" stop="49638"/>
                    <exon start="49732" stop="49809"/>
                    <exon start="49893" stop="49936"/>
                    <exon start="50650" stop="50690"/>
                    <exon start="50931" stop="51013"/>
                    <exon start="51231" stop="51320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSVGKNNLDSVEPEKKMECTLEEHITTLSFTGDESMMEMGSGDYGCSHYRRRCKIRAPCCDEIFDCRHCHNDSKNSLDVDPLERHDIPRHDIKRVICSLCNTEQDVQQKCIQCGVCMGKYFCSKCNFFDDDVSKNQYHCDKCGICRTGGEENFFHCDTCGCCYTNSMKESHKCIERAMHHNCPVCFEYIFDTTKNIIVLPCGHTMHLECVMQMEQHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="52566" PGL_stop="52104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52566" e_stop="52104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52566" e_stop="52104" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52566" stop="52104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTTTACACAAATACTTCATTTTGCCATATCTTCTTGTATTCTATACGAGTTCAACAGAATTCAGTAGTTTTCCTCTCGAACTAATATTTGTATTGAGGAGAATCCACTCAATACATATAACTAATCTATCTCGAATCTAGAAAAGTAGAAAGGACAATGAGTTCAGAACAAGAATAAGTGAAGAATGTTCGACAACTCCCCTTGTTGCAAGTAATGACATGTAAAATTCCTCCTCGATGCTTACCCTAGTAAACTCGTGAAAAATAATGAAGTTATAAATCATACCAATTGTTGCAGTCGTGACTCGTGGGCATTGATTTCATCGTTGAAAAGCTTGTCAATGTCGCGATGAAGAACCTCATCTAACCATTTCGGTAATATTAGAGCATGAACTGGACCCTCCTCTTGTCTGCCTTGTATTATAGGATTTGCAACTTGGACATTTATGTGCTACTATATG</gDNA_template>
            <first_frame> K  F  Y  T  N  T  S  F  C  H  I  F  L  Y  S  I  R  V  Q  Q  N  S  V  V  F  L  S  N  *  Y  L  Y  *  G  E  S  T  Q  Y  I  *  L  I  Y  L  E  S  R  K  V  E  R  T  M  S  S  E  Q  E  *  V  K  N  V  R  Q  L  P  L  L  Q  V  M  T  C  K  I  P  P  R  C  L  P  *  *  T  R  E  K  *  *  S  Y  K  S  Y  Q  L  L  Q  S  *  L  V  G  I  D  F  I  V  E  K  L  V  N  V  A  M  K  N  L  I  *  P  F  R  *  Y  *  S  M  N  W  T  L  L  L  S  A  L  Y  Y  R  I  C  N  L  D  I  Y  V  L  L  Y  </first_frame>
            <second_frame>  S  F  T  Q  I  L  H  F  A  I  S  S  C  I  L  Y  E  F  N  R  I  Q  *  F  S  S  R  T  N  I  C  I  E  E  N  P  L  N  T  Y  N  *  S  I  S  N  L  E  K  *  K  G  Q  *  V  Q  N  K  N  K  *  R  M  F  D  N  S  P  C  C  K  *  *  H  V  K  F  L  L  D  A  Y  P  S  K  L  V  K  N  N  E  V  I  N  H  T  N  C  C  S  R  D  S  W  A  L  I  S  S  L  K  S  L  S  M  S  R  *  R  T  S  S  N  H  F  G  N  I  R  A  *  T  G  P  S  S  C  L  P  C  I  I  G  F  A  T  W  T  F  M  C  Y  Y  M </second_frame>
            <third_frame>   V  L  H  K  Y  F  I  L  P  Y  L  L  V  F  Y  T  S  S  T  E  F  S  S  F  P  L  E  L  I  F  V  L  R  R  I  H  S  I  H  I  T  N  L  S  R  I  *  K  S  R  K  D  N  E  F  R  T  R  I  S  E  E  C  S  T  T  P  L  V  A  S  N  D  M  *  N  S  S  S  M  L  T  L  V  N  S  *  K  I  M  K  L  *  I  I  P  I  V  A  V  V  T  R  G  H  *  F  H  R  *  K  A  C  Q  C  R  D  E  E  P  H  L  T  I  S  V  I  L  E  H  E  L  D  P  P  L  V  C  L  V  L  *  D  L  Q  L  G  H  L  C  A  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004H20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52290" PGL_stop="52600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52290" e_stop="52600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52600" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52290" stop="52600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTCATTATTTTTCACGAGTTTACTAGGGTAAGCATCGAGGAGGAATTTTACATGTCATTACTTGCAACAAGGGGAGTTGTCGAACATTCTTCACTTATTCTTGTTCTGAACTCATTGTCCTTTCTACTTTTCTAGATTCGAGATAGATTAGTTATATGTATTGAGTGGATTCTCCTCAATACAAATATTAGTTCGAGAGGAAAACTACTGAATTCTGTTGAACTCGTATAGAATACAAGAAGATATGGCAAAATGAAGTATTTGTGTAAAACTTCATTAAACTTGACAAGAGTGTAGATTTTGTTGCT</gDNA_template>
            <first_frame> N  F  I  I  F  H  E  F  T  R  V  S  I  E  E  E  F  Y  M  S  L  L  A  T  R  G  V  V  E  H  S  S  L  I  L  V  L  N  S  L  S  F  L  L  F  *  I  R  D  R  L  V  I  C  I  E  W  I  L  L  N  T  N  I  S  S  R  G  K  L  L  N  S  V  E  L  V  *  N  T  R  R  Y  G  K  M  K  Y  L  C  K  T  S  L  N  L  T  R  V  *  I  L  L   </first_frame>
            <second_frame>  T  S  L  F  F  T  S  L  L  G  *  A  S  R  R  N  F  T  C  H  Y  L  Q  Q  G  E  L  S  N  I  L  H  L  F  L  F  *  T  H  C  P  F  Y  F  S  R  F  E  I  D  *  L  Y  V  L  S  G  F  S  S  I  Q  I  L  V  R  E  E  N  Y  *  I  L  L  N  S  Y  R  I  Q  E  D  M  A  K  *  S  I  C  V  K  L  H  *  T  *  Q  E  C  R  F  C  C  </second_frame>
            <third_frame>   L  H  Y  F  S  R  V  Y  *  G  K  H  R  G  G  I  L  H  V  I  T  C  N  K  G  S  C  R  T  F  F  T  Y  S  C  S  E  L  I  V  L  S  T  F  L  D  S  R  *  I  S  Y  M  Y  *  V  D  S  P  Q  Y  K  Y  *  F  E  R  K  T  T  E  F  C  *  T  R  I  E  Y  K  K  I  W  Q  N  E  V  F  V  *  N  F  I  K  L  D  K  S  V  D  F  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004H20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="66289" PGL_stop="71422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66289" e_stop="66374"/>
            <exon e_start="66467" e_stop="66544"/>
            <exon e_start="66628" e_stop="66726"/>
            <exon e_start="71032" e_stop="71422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.740" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66289" e_stop="66374" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.740" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66375" i_stop="66466" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66467" e_stop="66544" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66545" i_stop="66627" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66628" e_stop="66726" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66727" i_stop="71031" i_length="4305"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="71032" e_stop="71422" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66289" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66290" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66290" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66292" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66300" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66302" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66313" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66332" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66333" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66334" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66341" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66345" stop="66374"/>
              <exon start="66467" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66494" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66494" stop="66544"/>
              <exon start="66628" stop="66726"/>
              <exon start="71032" stop="71373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTCCACACAAAAACAAACCAGAAATCTAAGAACACAAAGGAAAAAAGTAATTTTTTTTTAAACAAATCTTTAAAAAAAATG : GTTTGTGTAGCTTGCTTAATACCACTGTTCCTAGTCCCGATCGTTAATTTATTACCTGTTCTCTTCCATATTCTCATG : GCGAAAGTTTATAGAATGTGTGGGAAGGAGTATCAGAAACCAGAAAGCGCACCTCCTGCTTGTCCTTTTAAACCATCAGCTACTAAACCCAATAATTCT : GTTTCCGGAGAAGAACCAAGTCCTGGCGCCCCCCATCCTGTACCTAAGGCAGTTGGAGTGGATGATTCCAAGCAGGACTAACTTTTGAAGTTGGAAACTTTGATTGTATTCAGCAAATTACATATCGGTTACGTCTTCCTTGAGACTATGCAGGTTCTCCTAGCCATTGTAAAAATGATATTGTGTGCTACCAATATCATCTTGGTTATAATTTAGTTTGTGGAGATTTGGATCATATAAACTGGACCTTCTACTTGTAAATCTATGTTTAAGACACATGACATCTGATTGTGTCTTTTCTACTTTATAATCTTTCTTCAGTTGTTTTATGTATGTGAAAGTGTCATTCTTGTGTCAATCACATGAAAGTGACAATTTGGAGATTCCGAAT</gDNA_template>
            <first_frame> F  F  S  T  Q  K  Q  T  R  N  L  R  T  Q  R  K  K  V  I  F  F  *  T  N  L  *  K  K  W :   F  V  *  L  A  *  Y  H  C  S  *  S  R  S  L  I  Y  Y  L  F  S  S  I  F  S  W :   R  K  F  I  E  C  V  G  R  S  I  R  N  Q  K  A  H  L  L  L  V  L  L  N  H  Q  L  L  N  P  I  I  L :   F  P  E  K  N  Q  V  L  A  P  P  I  L  Y  L  R  Q  L  E  W  M  I  P  S  R  T  N  F  *  S  W  K  L  *  L  Y  S  A  N  Y  I  S  V  T  S  S  L  R  L  C  R  F  S  *  P  L  *  K  *  Y  C  V  L  P  I  S  S  W  L  *  F  S  L  W  R  F  G  S  Y  K  L  D  L  L  L  V  N  L  C  L  R  H  M  T  S  D  C  V  F  S  T  L  *  S  F  F  S  C  F  M  Y  V  K  V  S  F  L  C  Q  S  H  E  S  D  N  L  E  I  P  N </first_frame>
            <second_frame>  S  S  P  H  K  N  K  P  E  I  *  E  H  K  G  K  K  *  F  F  F  K  Q  I  F  K  K  N   : G  L  C  S  L  L  N  T  T  V  P  S  P  D  R  *  F  I  T  C  S  L  P  Y  S  H   : G  E  S  L  *  N  V  W  E  G  V  S  E  T  R  K  R  T  S  C  L  S  F  *  T  I  S  Y  *  T  Q  *  F   : C  F  R  R  R  T  K  S  W  R  P  P  S  C  T  *  G  S  W  S  G  *  F  Q  A  G  L  T  F  E  V  G  N  F  D  C  I  Q  Q  I  T  Y  R  L  R  L  P  *  D  Y  A  G  S  P  S  H  C  K  N  D  I  V  C  Y  Q  Y  H  L  G  Y  N  L  V  C  G  D  L  D  H  I  N  W  T  F  Y  L  *  I  Y  V  *  D  T  *  H  L  I  V  S  F  L  L  Y  N  L  S  S  V  V  L  C  M  *  K  C  H  S  C  V  N  H  M  K  V  T  I  W  R  F  R   </second_frame>
            <third_frame>   L  L  H  T  K  T  N  Q  K  S  K  N  T  K  E  K  S  N  F  F  L  N  K  S  L  K  K  M  :  V  C  V  A  C  L  I  P  L  F  L  V  P  I  V  N  L  L  P  V  L  F  H  I  L  M  :  A  K  V  Y  R  M  C  G  K  E  Y  Q  K  P  E  S  A  P  P  A  C  P  F  K  P  S  A  T  K  P  N  N  S  :  V  S  G  E  E  P  S  P  G  A  P  H  P  V  P  K  A  V  G  V  D  D  S  K  Q  D  *  L  L  K  L  E  T  L  I  V  F  S  K  L  H  I  G  Y  V  F  L  E  T  M  Q  V  L  L  A  I  V  K  M  I  L  C  A  T  N  I  I  L  V  I  I  *  F  V  E  I  W  I  I  *  T  G  P  S  T  C  K  S  M  F  K  T  H  D  I  *  L  C  L  F  Y  F  I  I  F  L  Q  L  F  Y  V  C  E  S  V  I  L  V  S  I  T  *  K  *  Q  F  G  D  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004H20.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66291" stop="66374"/>
                    <exon start="66467" stop="66544"/>
                    <exon start="66628" stop="66726"/>
                    <exon start="71032" stop="71112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHTKTNQKSKNTKEKSNFFLNKSLKKMVCVACLIPLFLVPIVNLLPVLFHILMAKVYRMCGKEYQKPESAPPACPFKPSATKPNNSVSGEEPSPGAPHPVPKAVGVDDSKQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 81352 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 2085 bytes was the average size of a spliced alignment
$ 19608 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1634 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 76 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 11:25:33
-->
