<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 08:57:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702000" ref_strand="+" ref_description="SGN-E702000 [FA17CB05]">
      <seq>ggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1508" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1208" g_stop="1032" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="639" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="827" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E702000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1208" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>GGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703517" ref_strand="+" ref_description="SGN-E703517 [FA21CH08]">
      <seq>gaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1490" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1190" g_stop="1032" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="621" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="809" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1190" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>GACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704961" ref_strand="+" ref_description="SGN-E704961 [FA25DA12]">
      <seq>agctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttangacaagcagtcaaccaatgaacagccaacttgcaggttacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1437" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1137" g_stop="1032" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="568" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="756" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1137" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>AGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555580" ref_strand="+" ref_description="SGN-E555580 [cTSC-5-L15]">
      <seq>gctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1436" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1136" g_stop="1032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="567" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="755" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1136" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710113" ref_strand="+" ref_description="SGN-E710113 [FA54BA08]">
      <seq>ccgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatccaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaaagcagggcaaaatggatttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1407" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1107" g_stop="1032" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="538" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="727" r_length="189" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E710113" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1107" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTG-AAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>CCGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCCAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706942" ref_strand="+" ref_description="SGN-E706942 [FA31CE02]">
      <seq>ggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtccaccaatgaacagccaacttgcaggttacacatcagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1401" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1101" g_stop="1032" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="532" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="720" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1101" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241765" ref_strand="+" ref_description="SGN-E241765 [cLEE-10-C1]">
      <seq>aaggcaaattggtgttggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1012" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="712" g_stop="289" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="188" g_stop="1" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="612" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E241765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="712" e_stop="289"/>
          <exon e_start="188" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</genome_strand>
        <mrna_strand>AAGGCAAATTGGTGTTGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553539" ref_strand="+" ref_description="SGN-E553539 [cTSC-1-G8]">
      <seq>gattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaaatcaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1594" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1294" g_stop="1032" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="725" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="6" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="908" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1294" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="6"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAAT</genome_strand>
        <mrna_strand>GATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAAATCAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706886" ref_strand="+" ref_description="SGN-E706886 [FA31AH03]">
      <seq>ccgtttgaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggaccacagcgtgatctacgtgcaaagaggagatgcacaagtgccggtagtagaccacaccggggcaacagtgatgaatgacagggtaaatcaaggaaaaatgtttgtagtccctcagtactatgccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1495" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1200" g_stop="1032" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="632" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="27" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="796" r_length="164" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706886" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1200" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="27"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCG-CGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA-CACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATG-CCTCA</genome_strand>
        <mrna_strand>CCGTTTGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACCACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCCGGTAGTAGACCACACCGGGGCAACAGTGATGAATGACAGGGTAAATCAAGGAAAAATGTTTGTAGTCCCTCAGTACTATGCCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707808" ref_strand="+" ref_description="SGN-E707808 [FA34AB06]">
      <seq>ctctaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacacccgggcaacagtgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1662" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1363" g_stop="1032" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="794" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="77" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="906" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707808" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1363" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="77"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACA-CCGGGCAACAAGTGATGAATG</genome_strand>
        <mrna_strand>CTCTAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCCGGGCAAC-AGTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710135" ref_strand="+" ref_description="SGN-E710135 [FA54BD09]">
      <seq>ccgctttatcttgatcagaacttcagggcattctacttggccgccggagaacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccccgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttacagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagagaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaactagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1068" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1058" g_stop="1032" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.741"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="489" r_length="462" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="81" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="597" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E710135" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1058" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="81"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATG</genome_strand>
        <mrna_strand>CCGCTTTATCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGCCGGAGAACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCCCGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTACAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGAGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACTAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708974" ref_strand="+" ref_description="SGN-E708974 [FA42BB11]">
      <seq>ccctttttaacggtccaaccagcttgatcagaacttcagggcatcctttttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccacaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcacaattaagcatgttaatagccaaaattttcccatccttacagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacaccgtcatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1363" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1071" g_stop="1032" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.80"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="502" r_length="462" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="83" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="608" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708974" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1071" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="83"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGA</genome_strand>
        <mrna_strand>CCCTTTTTAACGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATCCTTTTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCACAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCACAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTACAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACACCGTCATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701707" ref_strand="+" ref_description="SGN-E701707 [FA16CH06]">
      <seq>agcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1606" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1306" g_stop="1032" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="737" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="87" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="839" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1306" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="87"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAA</genome_strand>
        <mrna_strand>AGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709573" ref_strand="+" ref_description="SGN-E709573 [FA52BH06]">
      <seq>cgggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaagagatgcacaagtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1617" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1319" g_stop="1032" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="750" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="111" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="828" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709573" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1319" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAG</genome_strand>
        <mrna_strand>CGGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAAGAGATGCACAAGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708148" ref_strand="+" ref_description="SGN-E708148 [FA34DH10]">
      <seq>ccaatattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattgctgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1661" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1362" g_stop="1032" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="793" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="132" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="850" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1362" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAA</genome_strand>
        <mrna_strand>CCAATATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGCTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705553" ref_strand="+" ref_description="SGN-E705553 [FA27BH08]">
      <seq>cttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1620" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1320" g_stop="1032" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="751" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="139" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="801" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1320" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTA</genome_strand>
        <mrna_strand>CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697733" ref_strand="+" ref_description="SGN-E697733 [FA03DH12]">
      <seq>gcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1621" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1321" g_stop="1032" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="752" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="141" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="800" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E697733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1321" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATC</genome_strand>
        <mrna_strand>GCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553803" ref_strand="+" ref_description="SGN-E553803 [cTSC-2-E2]">
      <seq>atcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1610" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1310" g_stop="1032" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="741" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="143" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="787" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1310" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGA</genome_strand>
        <mrna_strand>ATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704419" ref_strand="+" ref_description="SGN-E704419 [FA24BA03]">
      <seq>gttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1688" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1388" g_stop="1032" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="819" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="153" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="855" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1388" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA</genome_strand>
        <mrna_strand>GTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699878" ref_strand="+" ref_description="SGN-E699878 [FA11BH04]">
      <seq>agaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1546" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1246" g_stop="1032" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="677" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="158" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="708" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1246" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGA</genome_strand>
        <mrna_strand>AGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554585" ref_strand="+" ref_description="SGN-E554585 [cTSC-4-M15]">
      <seq>tgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1678" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1378" g_stop="1032" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="809" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="177" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="821" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1378" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATG</genome_strand>
        <mrna_strand>TGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701982" ref_strand="+" ref_description="SGN-E701982 [FA17BH10]">
      <seq>gccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttanagacatggacatgagtgcctctaaaagaaccctatatccgaacgcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1767" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1467" g_stop="1032" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="898" r_length="462" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="178" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="909" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701982" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1467" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGAT</genome_strand>
        <mrna_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTANAGACATGGACATGAGTGCCTCTAAAAGAACCCTATATCCG....................................................................................................AACGCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554636" ref_strand="+" ref_description="SGN-E554636 [cTSC-4-O7]">
      <seq>gttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaatttaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1670" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1370" g_stop="1032" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="802" r_length="463" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="178" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="813" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1370" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAA-TTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGAT</genome_strand>
        <mrna_strand>GTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703605" ref_strand="+" ref_description="SGN-E703605 [FA21DH04]">
      <seq>tgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1719" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1419" g_stop="1032" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="289" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="850" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="188" g_stop="179" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="860" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1419" e_stop="1032"/>
          <exon e_start="750" e_stop="289"/>
          <exon e_start="188" e_stop="179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGA</genome_strand>
        <mrna_strand>TGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707706" ref_strand="+" ref_description="SGN-E707706 [FA33DA08]">
      <seq>cccattattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccctaaagacatggacatgagtgcctctaaaggaaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1754" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1460" g_stop="1032" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="293" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="887" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707706" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1460" e_stop="1032"/>
          <exon e_start="750" e_stop="293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</genome_strand>
        <mrna_strand>CCCATTATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCCTAAAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703737" ref_strand="+" ref_description="SGN-E703737 [FA22BC12]">
      <seq>gtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1698" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1398" g_stop="1032" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="293" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="825" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1398" e_stop="1032"/>
          <exon e_start="750" e_stop="293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</genome_strand>
        <mrna_strand>GTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554776" ref_strand="+" ref_description="SGN-E554776 [cTSC-5-G12]">
      <seq>gctggtgctgctcattggtgctacaacgacggacgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggtgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttgaaagaaaacatttgctcaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggctaaattaagcatgttaataagccaaaattttcccatccttagagacatggacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1436" stop="14"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1136" g_stop="1032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="314" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="544" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554776" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1136" e_stop="1032"/>
          <exon e_start="750" e_stop="314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGG-TGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAAT-AGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAG</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGACGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGTGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGAAAGAAAACATTTGCTCAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCTAAATTAAGCATGTTAATAAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701730" ref_strand="+" ref_description="SGN-E701730 [FA16DB06]">
      <seq>gcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaacatttgcacaatgaaaatccgcacccacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaataagccaaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1845" stop="38"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1545" g_stop="1032" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="338" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="926" r_length="412" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701730" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1545" e_stop="1032"/>
          <exon e_start="750" e_stop="338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCC</genome_strand>
        <mrna_strand>GCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAG-AAACATTTGCACAATGAAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAAGCCAAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703664" ref_strand="+" ref_description="SGN-E703664 [FA22AE06]">
      <seq>gcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcacccacatggatactcaaagacgagctgatatctactcaaagcaagctggcaaaattaagcatgttaatagccaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1782" stop="40"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1482" g_stop="1032" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="340" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="862" r_length="411" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1482" e_stop="1032"/>
          <exon e_start="750" e_stop="340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTT</genome_strand>
        <mrna_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAAGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698320" ref_strand="+" ref_description="SGN-E698320 [FA05DG08]">
      <seq>cgtgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagacaacatttgcacaatgaaaatccgcaccaacctggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1671" stop="62"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1373" g_stop="1032" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="362" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="731" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698320" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1373" e_stop="1032"/>
          <exon e_start="750" e_stop="362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAA</genome_strand>
        <mrna_strand>CGTGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGACAACATTTGCACAATGAAAATCCGCACCAACCTGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703663" ref_strand="+" ref_description="SGN-E703663 [FA22AE05]">
      <seq>gcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1782" stop="65"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1482" g_stop="1032" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="365" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="837" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1482" e_stop="1032"/>
          <exon e_start="750" e_stop="365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAAT</genome_strand>
        <mrna_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708610" ref_strand="+" ref_description="SGN-E708610 [FA36AH12]">
      <seq>cgcttacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatngaaatccgcacccacatggatactcaaagacgagctgatatctactcaaggcaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1800" stop="70"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1506" g_stop="1032" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="370" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="855" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708610" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1506" e_stop="1032"/>
          <exon e_start="750" e_stop="370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGC</genome_strand>
        <mrna_strand>CGCTTA-CAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATNGAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709722" ref_strand="+" ref_description="SGN-E709722 [FA52DG05]">
      <seq>gccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaatccgcaccaacatggatactcaaagacgaactgatatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1767" stop="84"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1467" g_stop="1032" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="384" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="802" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1467" e_stop="1032"/>
          <exon e_start="750" e_stop="384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACT</genome_strand>
        <mrna_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATG-AAATCCGCACCAACATGGATACTCAAAGACGAACTGATATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700749" ref_strand="+" ref_description="SGN-E700749 [FA14AC03]">
      <seq>cagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1844" stop="86"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1544" g_stop="1032" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="386" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="878" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E700749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1544" e_stop="1032"/>
          <exon e_start="750" e_stop="386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTA</genome_strand>
        <mrna_strand>CAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554013" ref_strand="+" ref_description="SGN-E554013 [cTSC-2-P10]">
      <seq>gcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttgaaagaaaacatttgcacaatgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1836" stop="124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1536" g_stop="1032" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="424" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="832" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554013" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1536" e_stop="1032"/>
          <exon e_start="750" e_stop="424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATC</genome_strand>
        <mrna_strand>GCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGAAAGAAAACATTTGCACAATGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705706" ref_strand="+" ref_description="SGN-E705706 [FA27DF09]">
      <seq>gtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattagggctgatgaagaagaagaagaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggagaaaacatttgcacaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1916" stop="127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1616" g_stop="1032" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="427" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="908" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705706" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1616" e_stop="1032"/>
          <exon e_start="750" e_stop="427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAA</genome_strand>
        <mrna_strand>GTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAAGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGG-AGAAAACATTTGCACAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555883" ref_strand="+" ref_description="SGN-E555883 [cTSD-1-L17]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaatttcgagggcgatcacaacgaggacagcgatggtgggcagagtaactggaaatggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1954" stop="149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1032" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="449" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="924" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555883" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1032"/>
          <exon e_start="750" e_stop="449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGA</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTTCGAGGGCGATCACAACGAGGACAGCGATGGTGGGCAG-AGTAACTGGAAATGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367814" ref_strand="+" ref_description="SGN-E367814 [TUS-22-A11]">
      <seq>aaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattgttgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1660" stop="152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1360" g_stop="1032" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="452" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="628" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E367814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1360" e_stop="1032"/>
          <exon e_start="750" e_stop="452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTT</genome_strand>
        <mrna_strand>AAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGTTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554483" ref_strand="+" ref_description="SGN-E554483 [cTSC-4-H12]">
      <seq>cttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1899" stop="158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1599" g_stop="1032" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="458" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="861" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1599" e_stop="1032"/>
          <exon e_start="750" e_stop="458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAA</genome_strand>
        <mrna_strand>CTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555761" ref_strand="+" ref_description="SGN-E555761 [cTSD-1-F15]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1954" stop="180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1032" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="480" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="894" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1032"/>
          <exon e_start="750" e_stop="480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGAT</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703088" ref_strand="+" ref_description="SGN-E703088 [FA20CB03]">
      <seq>tatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttangaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattanggctgatgaagaagaagaggaattcgaagggcgatcacaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1975" stop="189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1675" g_stop="1032" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="489" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="906" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703088" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1675" e_stop="1032"/>
          <exon e_start="750" e_stop="489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAG</genome_strand>
        <mrna_strand>TATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTANGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTANGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708140" ref_strand="+" ref_description="SGN-E708140 [FA34DH01]">
      <seq>ctattaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaaaaagaggaattccaagggcgatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1963" stop="192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1664" g_stop="1032" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="492" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="892" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708140" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1664" e_stop="1032"/>
          <exon e_start="750" e_stop="492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAAC</genome_strand>
        <mrna_strand>CTATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAAAAGAGGAATTCCAAGGGCGATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555382" ref_strand="+" ref_description="SGN-E555382 [cTSC-2-I4]">
      <seq>ctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1886" stop="198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1586" g_stop="1032" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="498" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="808" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1586" e_stop="1032"/>
          <exon e_start="750" e_stop="498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</genome_strand>
        <mrna_strand>CTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698965" ref_strand="+" ref_description="SGN-E698965 [FA08AF04]">
      <seq>cgttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgtcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactacttgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1688" stop="198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1389" g_stop="1032" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="498" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="612" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698965" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1389" e_stop="1032"/>
          <exon e_start="750" e_stop="498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCG-CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</genome_strand>
        <mrna_strand>CGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGTCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTACTTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702466" ref_strand="+" ref_description="SGN-E702466 [FA18DB11]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcaaaggccttcaacatccccgtagagattgttaggaggatgccagaagaacagaacgaacggggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="521" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="868" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E702466" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAAAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGAACAGAACGAACGGGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553480" ref_strand="+" ref_description="SGN-E553480 [cTSC-1-E1]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1972" stop="223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1032" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="523" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="869" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1032"/>
          <exon e_start="750" e_stop="523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAA</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707893" ref_strand="+" ref_description="SGN-E707893 [FA34BA11]">
      <seq>catttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggaatgcagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="524" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="866" r_length="227" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707893" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>CATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGAATGCAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701815" ref_strand="+" ref_description="SGN-E701815 [FA17AB01]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="524" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="865" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709484" ref_strand="+" ref_description="SGN-E709484 [FA52AG04]">
      <seq>ggcggtctctactattgtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaccatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1932" stop="224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1632" g_stop="1032" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="524" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="828" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709484" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1632" e_stop="1032"/>
          <exon e_start="750" e_stop="524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGCGGTCTCTACTATTGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGACCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706323" ref_strand="+" ref_description="SGN-E706323 [FA29CF01]">
      <seq>gggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggagggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1918" stop="224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1618" g_stop="1032" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="524" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="814" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706323" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1618" e_stop="1032"/>
          <exon e_start="750" e_stop="524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAGGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552744" ref_strand="+" ref_description="SGN-E552744 [cTSB-4-O14]">
      <seq>ggcttgttagctttactcattctctgcttttctcttatctgctccacatgcatatacacaatgtccgtttctggacggtcagcgcggatcagagaagcattcctctgactcaagctcaactatgccgctgaccgaggcttactggaagccagacctctcaccgcattgagtcacagggcgggtaccctgaggtgtgggatgagaatgaagagcaattccagtgtgttggagttgctcctatgaagaatgttattcgtcaaaattctctctttttgcctgattttcatcccatgcctcggttggtttatatcaagcaggggatgggattgattagtgtgattaaccctggttgtgccgagactttccagatctctaccttccaaggtggccgaatggtccgtgaagagaggggtgaacgccgcgaatacgaccagcaccagaaggtccaccgcattcaccaaggccacgttgtggcaattccagcgggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagctgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1917" stop="224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1616" g_stop="1032" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="524" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="813" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E552744" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1616" e_stop="1032"/>
          <exon e_start="750" e_stop="524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTAGCTTTACTC-TTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGG-TCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAG-TCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGCTTGTTAGCTTTACTCATTCTCTGCTTTTCTCTTATCTGCTCCACATGCATATACACAATGTCCGTTTCTGGACGGTCAGCGCGGATCAGAGAAGCATTCCTCTGACTCAAGCTCAACTATGCCGCTGACCGAGGCTTACTGGAAGCCAGACCTCTCACCGCATTGAGTCACAGGGCGGGTACCCTGAGGTGTGGGATGAGAATGAAGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAAGAATGTTATTCGTCAAAATTCTCTCTTTTTGCCTGATTTTCATCCCATGCCTCGGTTGGTTTATATCAAGCAGGGGATGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGATCTC-TACCTTCCAAGGTGGCCGAATGGTCCGTGAAGAGAGGGGTGAACGCCGCGAATACGACCAGCACCAGAAGGTCCACCGCATTCACCAAGGCCACGTTGTGGCAATTCCAGCGGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGC-TGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708163" ref_strand="+" ref_description="SGN-E708163 [FA35AB01]">
      <seq>tttttatattatatcatctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1032" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="525" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="879" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708163" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1032"/>
          <exon e_start="750" e_stop="525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>TTTTTATATTATATCATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700322" ref_strand="+" ref_description="SGN-E700322 [FA12DB10]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggaaaggaatgagcatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="525" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="864" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E700322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGAAAGGAATGAGCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709587" ref_strand="+" ref_description="SGN-E709587 [FA52CA08]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggcaaggaatgaccatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1961" stop="225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1032" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="525" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="856" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709587" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1032"/>
          <exon e_start="750" e_stop="525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGCAAGGAATGACCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702852" ref_strand="+" ref_description="SGN-E702852 [FA19DE05]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaataagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1032" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="526" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="878" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E702852" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1032"/>
          <exon e_start="750" e_stop="526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAATAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708319" ref_strand="+" ref_description="SGN-E708319 [FA35BG07]">
      <seq>catctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="526" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="864" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>CATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700807" ref_strand="+" ref_description="SGN-E700807 [FA14AH07]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttangaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="526" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="863" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E700807" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTANGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555695" ref_strand="+" ref_description="SGN-E555695 [cTSD-1-B8]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="526" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="863" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553431" ref_strand="+" ref_description="SGN-E553431 [cTSC-1-B20]">
      <seq>ctccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcccatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagctttccacagactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtggcacgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1944" stop="226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1644" g_stop="1032" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="526" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="839" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553431" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1644" e_stop="1032"/>
          <exon e_start="750" e_stop="526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA-GGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>CTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCCCATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCTTTCCACAGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGCACGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707793" ref_strand="+" ref_description="SGN-E707793 [FA34AA02]">
      <seq>cctttttgagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattagggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1964" stop="227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="527" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="863" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707793" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGA</genome_strand>
        <mrna_strand>CCTTTTTGAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTAGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708229" ref_strand="+" ref_description="SGN-E708229 [FA35AG09]">
      <seq>tttttatattatatcatttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1032" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="528" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="876" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1032"/>
          <exon e_start="750" e_stop="528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>TTTTTATATTATATCATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704398" ref_strand="+" ref_description="SGN-E704398 [FA24AG03]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggagggatgcagaagaacagaacgaacgtggactaatttgttatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1961" stop="228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1032" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="528" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="853" r_length="223" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704398" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1032"/>
          <exon e_start="750" e_stop="528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGA-GGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGGATGC-AGAAGAACAGAACGAACGTGGACTAATTTGTTATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700640" ref_strand="+" ref_description="SGN-E700640 [FA13CH07]">
      <seq>gcccttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1914" stop="228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1617" g_stop="1032" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="528" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="810" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E700640" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1617" e_stop="1032"/>
          <exon e_start="750" e_stop="528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAG-AACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>GCCCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705984" ref_strand="+" ref_description="SGN-E705984 [FA28CG03]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1032" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="534" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="870" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1032"/>
          <exon e_start="750" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705307" ref_strand="+" ref_description="SGN-E705307 [FA26DA07]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1972" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1032" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="534" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="858" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1032"/>
          <exon e_start="750" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703107" ref_strand="+" ref_description="SGN-E703107 [FA20CC11]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="534" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="855" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701186" ref_strand="+" ref_description="SGN-E701186 [FA15BA11]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1966" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1666" g_stop="1032" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="534" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="852" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701186" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1666" e_stop="1032"/>
          <exon e_start="750" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553534" ref_strand="+" ref_description="SGN-E553534 [cTSC-1-G24]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaatttgttaatgtcagggaaggaatgagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="536" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="855" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553534" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAA-TTGTTAATGTCAGGGAAGGAATGAGCATGAT</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTTGTTAATGTCAGGGAAGGAATGAGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708113" ref_strand="+" ref_description="SGN-E708113 [FA34DE10]">
      <seq>ccgatgagagagagagagaatcaattagtaataaacaataaaaactccatagccatggaggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1974" stop="237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1102" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="587" r_length="569" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1101" i_stop="733" i_length="369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="732" g_stop="537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="783" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1102"/>
          <exon e_start="732" e_stop="537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCATAGCCATGGAGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA.................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709566" ref_strand="+" ref_description="SGN-E709566 [FA52BG10]">
      <seq>caattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1967" stop="237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1667" g_stop="1032" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="537" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="850" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1667" e_stop="1032"/>
          <exon e_start="750" e_stop="537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703321" ref_strand="+" ref_description="SGN-E703321 [FA21AG03]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaaactgatggcagaggccttcaacatccccgtagagatttgttagaggatgcaagaagaacagaacgaacgtgggactaattgttaatgtcagggaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1966" stop="244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1666" g_stop="1032" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="544" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="844" r_length="209" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E703321" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1666" e_stop="1032"/>
          <exon e_start="750" e_stop="544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAG-AACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGT-GGACTAATTGTTAATGTCAGGGAAGGAATG</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTTGTTAGAGGATGCAAGAAGAACAGAACGAACGTGGGACTAATTGTTAATGTCAGGGAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707812" ref_strand="+" ref_description="SGN-E707812 [FA34AB10]">
      <seq>ctctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1968" stop="245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="545" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="844" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707812" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</genome_strand>
        <mrna_strand>CTCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709659" ref_strand="+" ref_description="SGN-E709659 [FA52CH06]">
      <seq>ataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcaccagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgccagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1951" stop="245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1651" g_stop="1032" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="545" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="826" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709659" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1651" e_stop="1032"/>
          <exon e_start="750" e_stop="545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</genome_strand>
        <mrna_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCACCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554512" ref_strand="+" ref_description="SGN-E554512 [cTSC-4-I22]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacatttttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaaaaagaacagaacgaacgtggactaattgttaatgtcagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="550" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="841" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554512" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACA-TTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAAAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707580" ref_strand="+" ref_description="SGN-E707580 [FA33BF07]">
      <seq>catttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="555" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="835" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E707580" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA</genome_strand>
        <mrna_strand>CATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721987" ref_strand="+" ref_description="SGN-E721987 [FC15DE07]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1999" stop="257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1700" g_stop="1032" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="557" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="863" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E721987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1700" e_stop="1032"/>
          <exon e_start="750" e_stop="557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554263" ref_strand="+" ref_description="SGN-E554263 [cTSC-3-L5]">
      <seq>ataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagatttgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1951" stop="257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1651" g_stop="1032" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="557" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="815" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1651" e_stop="1032"/>
          <exon e_start="750" e_stop="557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGA-TTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</genome_strand>
        <mrna_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701433" ref_strand="+" ref_description="SGN-E701433 [FA15DH03]">
      <seq>ggacgaggatcacttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcnagaagaacagaacgaacgtggactaattgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1677" g_stop="1032" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="559" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="838" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701433" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1677" e_stop="1032"/>
          <exon e_start="750" e_stop="559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</genome_strand>
        <mrna_strand>GGACGAGGATCACTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCNAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701081" ref_strand="+" ref_description="SGN-E701081 [FA14DH09]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggggtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaatttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1972" stop="261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1032" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="559" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="833" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701081" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1032"/>
          <exon e_start="750" e_stop="559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGGGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705932" ref_strand="+" ref_description="SGN-E705932 [FA28CB10]">
      <seq>cgaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatcccccgtagagattgttaggaggatgccagaagaccagaacgaccgtggactaattgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1952" stop="261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1032" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="561" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="814" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705932" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1032"/>
          <exon e_start="750" e_stop="561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT-CCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTA</genome_strand>
        <mrna_strand>CGAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGACCAGAACGACCGTGGACTAATTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708482" ref_strand="+" ref_description="SGN-E708482 [FA35DE10]">
      <seq>cttttattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaagaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1982" stop="264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1682" g_stop="1032" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="564" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="838" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708482" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1682" e_stop="1032"/>
          <exon e_start="750" e_stop="564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>CTTTTATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAAGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706467" ref_strand="+" ref_description="SGN-E706467 [FA30AB08]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="564" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="825" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704322" ref_strand="+" ref_description="SGN-E704322 [FA23DH06]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtggggtgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1961" stop="264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1032" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="564" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="817" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1032"/>
          <exon e_start="750" e_stop="564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGGTGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554655" ref_strand="+" ref_description="SGN-E554655 [cTSC-4-P8]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaatttggtgtaggaaaagcaaagcacacagaaattccagaacattttccgtgctttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggagggatgcaagaaagaacagaacgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="575" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="820" r_length="181" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554655" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAA-TTGGTGTAGG-AAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT-AACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGA-GGATGCAAG-AAGAACAGAACGAACG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTTGGTGTAGGAAAAGCAAAGCACACAGAAATTCCAGAACATTTTCCGTGCTTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGGATGCAAGAAAGAACAGAACGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704634" ref_strand="+" ref_description="SGN-E704634 [FA24DD01]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtangaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="576" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="813" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAAC</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTANGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699623" ref_strand="+" ref_description="SGN-E699623 [FA10CH08]">
      <seq>cctttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgaaagaagaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1686" g_stop="1032" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="581" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="825" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699623" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1686" e_stop="1032"/>
          <exon e_start="750" e_stop="581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAA</genome_strand>
        <mrna_strand>CCTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGAAAGAAGAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706480" ref_strand="+" ref_description="SGN-E706480 [FA30AD01]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtaaagattgttaggaggatgcaagaagaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1961" stop="281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1032" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="581" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="800" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706480" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1032"/>
          <exon e_start="750" e_stop="581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAA</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAAAGATTGTTAGGAGGATGCAAGAAGAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553864" ref_strand="+" ref_description="SGN-E553864 [cTSC-2-H21]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="585" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="805" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E553864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAC</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554114" ref_strand="+" ref_description="SGN-E554114 [cTSC-3-E18]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaaattccagaacattttccgtgctttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1669" g_stop="1032" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="590" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="800" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1669" e_stop="1032"/>
          <exon e_start="750" e_stop="590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC-TTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAATTCCAGAACATTTTCCGTGCTTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721882" ref_strand="+" ref_description="SGN-E721882 [FC15CC12]">
      <seq>tgggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcctttcacatccccgtagagattgttaggaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1699" g_stop="1032" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="698" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="593" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="856" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E721882" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1699" e_stop="1032"/>
          <exon e_start="750" e_stop="593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCA</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTTCACATCCCCGTAGAGATTGTTAGGAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554734" ref_strand="+" ref_description="SGN-E554734 [cTSC-5-E10]">
      <seq>caattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccatcaccagaaggtccaccgcattcgccaaggcgacgttgtggcataaccaactggtactgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctctaccatcggtccaaccagcttgatcagaacttcatggcattctacttggccggtggagtacaataaactagtggaaggcaaattggcgtaggaaagctaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccctgtagagattgttacgaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1706" stop="293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1406" g_stop="1032" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="593" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="533" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554734" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1406" e_stop="1032"/>
          <exon e_start="750" e_stop="593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCA</genome_strand>
        <mrna_strand>CAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCATCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCATAACCAACTGGTACTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCTACCATCGGTCCAACCAGCTTGATCAGAACTTCATG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAATAAACTAGTGGAAGGCAAATTGGCGTAGGAAAGCTAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCTGTAGAGATTGTTACGAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720103" ref_strand="+" ref_description="SGN-E720103 [FC09DC11]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2001" stop="294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1699" g_stop="1032" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="713" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="594" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="870" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E720103" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1699" e_stop="1032"/>
          <exon e_start="750" e_stop="594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722774" ref_strand="+" ref_description="SGN-E722774 [FC18BB09]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1999" stop="295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1700" g_stop="1032" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="595" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="825" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E722774" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1700" e_stop="1032"/>
          <exon e_start="750" e_stop="595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATG</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698090" ref_strand="+" ref_description="SGN-E698090 [FA05AH08]">
      <seq>catcttttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="614" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="776" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698090" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</genome_strand>
        <mrna_strand>CATCTTTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556789" ref_strand="+" ref_description="SGN-E556789 [cTSD-4-J23]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1954" stop="314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1032" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="614" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="760" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1032"/>
          <exon e_start="750" e_stop="614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708675" ref_strand="+" ref_description="SGN-E708675 [FA36BH06]">
      <seq>catctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcaaaggccttcaacatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1969" stop="316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1032" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="616" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="774" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E708675" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1032"/>
          <exon e_start="750" e_stop="616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCC</genome_strand>
        <mrna_strand>CATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAAAGGCCTTCAACATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710057" ref_strand="+" ref_description="SGN-E710057 [FA54AC12]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcaaggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaagaaagccaagcacacagaagttccagaacattttccgtgctttttacacagaactgatggcagaggccttcaacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1986" stop="317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1686" g_stop="1032" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="617" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="789" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E710057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1686" e_stop="1032"/>
          <exon e_start="750" e_stop="617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCC</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAAG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAAGAAAGCCAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTTACACAGAACTGATGGCAGAGGCCTTCAACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719071" ref_strand="+" ref_description="SGN-E719071 [FC06CF10]">
      <seq>aatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1713" g_stop="1032" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="620" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="813" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E719071" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1713" e_stop="1032"/>
          <exon e_start="750" e_stop="620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238296" ref_strand="+" ref_description="SGN-E238296 [cLED-17-A13]">
      <seq>tggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgctttaacacagaactgatggcagaggacttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1533" stop="320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1233" g_stop="1032" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="620" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="332" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E238296" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1233" e_stop="1032"/>
          <exon e_start="750" e_stop="620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</genome_strand>
        <mrna_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC-TTTAACACAGAACTGATGGCAGAGGACTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701661" ref_strand="+" ref_description="SGN-E701661 [FA16CD07]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1986" stop="328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1686" g_stop="1032" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="628" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="778" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E701661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1686" e_stop="1032"/>
          <exon e_start="750" e_stop="628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706921" ref_strand="+" ref_description="SGN-E706921 [FA31CC04]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1954" stop="328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1032" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="628" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="746" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1032"/>
          <exon e_start="750" e_stop="628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720546" ref_strand="+" ref_description="SGN-E720546 [FC11AE08]">
      <seq>aatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1713" g_stop="1032" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="635" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="798" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E720546" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1713" e_stop="1032"/>
          <exon e_start="750" e_stop="635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719740" ref_strand="+" ref_description="SGN-E719740 [FC08DA06]">
      <seq>gggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1699" g_stop="1032" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="697" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="635" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="813" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E719740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1699" e_stop="1032"/>
          <exon e_start="750" e_stop="635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722546" ref_strand="+" ref_description="SGN-E722546 [FC17CD04]">
      <seq>gggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1699" g_stop="1032" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="697" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="635" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="813" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E722546" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1699" e_stop="1032"/>
          <exon e_start="750" e_stop="635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705107" ref_strand="+" ref_description="SGN-E705107 [FA26AG05]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaagcaaattggtgtaggaaagcaaagcacagaagttccagaacattttccgtgcttttaacacagaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1986" stop="338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1686" g_stop="1032" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="638" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="766" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E705107" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1686" e_stop="1032"/>
          <exon e_start="750" e_stop="638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGAT</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAAGCAAATTGGTGTAGGAAAGCAAAG--CACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699663" ref_strand="+" ref_description="SGN-E699663 [FA10DD08]">
      <seq>cgcttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattgctgtacgaaagcaaagcacacagaagttccagaacattttccgtgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1964" stop="351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1667" g_stop="1032" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="651" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="736" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699663" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1667" e_stop="1032"/>
          <exon e_start="750" e_stop="651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTA</genome_strand>
        <mrna_strand>CGCTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGCTGTACGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704767" ref_strand="+" ref_description="SGN-E704767 [FA25AH02]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtaccaaaaactagtggaaggcaaattggtgtacgaaagcaaagcacccagaagttccacaacattttccgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1032" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="652" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="752" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1032"/>
          <exon e_start="750" e_stop="652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACCAAAAACTAGTGGAAGGCAAATTGGTGTACGAAAGCAAAGCACCCAGAAGTTCCACAACATTTTCCGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699917" ref_strand="+" ref_description="SGN-E699917 [FA11CD03]">
      <seq>cggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctggttggccggtggagtacaaaaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1930" stop="352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1630" g_stop="1032" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="652" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="698" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699917" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1630" e_stop="1032"/>
          <exon e_start="750" e_stop="652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</genome_strand>
        <mrna_strand>CGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTGGTTGGCCGGTGGAGTACAAAAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699592" ref_strand="+" ref_description="SGN-E699592 [FA10CE03]">
      <seq>ccaatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1672" g_stop="1032" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="653" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="739" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699592" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1672" e_stop="1032"/>
          <exon e_start="750" e_stop="653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTT</genome_strand>
        <mrna_strand>CCAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722395" ref_strand="+" ref_description="SGN-E722395 [FC17AF02]">
      <seq>aatcggccgaattgatctcatctttgtattctttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtgaaaggcaaattggtgtaggaaaagcaaagcacacagaagttccagaacattttccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1713" g_stop="1032" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="656" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="778" r_length="96" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E722395" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1713" e_stop="1032"/>
          <exon e_start="750" e_stop="656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGG-AAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTCTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGAAAGGCAAATTGGTGTAGGAAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368063" ref_strand="+" ref_description="SGN-E368063 [TUS-22-A18]">
      <seq>tggccgaatggcaggtgaagagaggggtgaacgtccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacatcgactgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtgtaaggcaaattggtgtaggaaagcaaatcacacagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1533" stop="374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1233" g_stop="1032" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="673" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="281" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E368063" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1233" e_stop="1032"/>
          <exon e_start="750" e_stop="673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACG-CCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTC</genome_strand>
        <mrna_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGTCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACATCGACTGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGTAAGGCAAATTGGTGTAGGAAAGCAAATCACACAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724241" ref_strand="+" ref_description="SGN-E724241 [FC23CA08]">
      <seq>ggggatccgatgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2001" stop="378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1699" g_stop="1032" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="680" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="678" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="753" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E724241" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1699" e_stop="1032"/>
          <exon e_start="750" e_stop="678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGA</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723066" ref_strand="+" ref_description="SGN-E723066 [FC19BA10]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1999" stop="383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1700" g_stop="1032" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="683" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="737" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E723066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1700" e_stop="1032"/>
          <exon e_start="750" e_stop="683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCAC</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725049" ref_strand="+" ref_description="SGN-E725049 [FC25DF11]">
      <seq>aatcggccgaattaatctcatctttgctcttttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcaaaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="2008" stop="389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1713" g_stop="1032" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="689" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="745" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E725049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1713" e_stop="1032"/>
          <exon e_start="750" e_stop="689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTG-TATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCA</genome_strand>
        <mrna_strand>AATCGGCCGAATTAATCTCATCTTTGCTCTTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAAAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710310" ref_strand="+" ref_description="SGN-E710310 [FA55AB07]">
      <seq>ctttataaggatcaattagtaataaacaataaaaactccttccccttggaggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtacccgtctccattaacgatctcaaccatcggtccaacccccttgatcagaactttagggcattctacttggccggtggagtacaagaaactaaaggaaggcaaattggtgtacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1976" stop="393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1681" g_stop="1032" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="693" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="706" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E710310" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1681" e_stop="1032"/>
          <exon e_start="750" e_stop="693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAA</genome_strand>
        <mrna_strand>CTTTAT-A-AGGATCAATTAGTAATAAACAATAAAAACTCCTTCCCCTTGGAGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTACCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCCCCTTGATCAGAACTTTAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAAAGGAAGGCAAATTGGTGTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706895" ref_strand="+" ref_description="SGN-E706895 [FA31AH12]">
      <seq>cgccttggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagagggttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctccacaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtcctccattaacgatctccaccatcggcccaacccagcttgatcagaaattcagggcattctacttggccggtggactacaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1937" stop="418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1638" g_stop="1032" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="718" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="643" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706895" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1638" e_stop="1032"/>
          <exon e_start="750" e_stop="718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCT-CAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGT-CTCCATTAACGATCTCAACCATCGGTCCAA-CCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACT</genome_strand>
        <mrna_strand>CGCCTTGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGGTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCCACACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCCTCCATTAACGATCTCCACCATCGGCCCAACCCAGCTTGATCAGAAATTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGACTACAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719688" ref_strand="+" ref_description="SGN-E719688 [FC08CD04]">
      <seq>taaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1957" stop="420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1657" g_stop="1032" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="720" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="657" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E719688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1657" e_stop="1032"/>
          <exon e_start="750" e_stop="720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAA</genome_strand>
        <mrna_strand>TAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697611" ref_strand="+" ref_description="SGN-E697611 [FA03CC12]">
      <seq>cgaaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1949" stop="429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1651" g_stop="1032" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="729" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="642" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E697611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1651" e_stop="1032"/>
          <exon e_start="750" e_stop="729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAG</genome_strand>
        <mrna_strand>CGAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704728" ref_strand="+" ref_description="SGN-E704728 [FA25AD06]">
      <seq>agctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccacccagcttgatcagaacttcagggcattctacttggccggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1908" stop="429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1608" g_stop="1032" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="729" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="599" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E704728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1608" e_stop="1032"/>
          <exon e_start="750" e_stop="729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAG</genome_strand>
        <mrna_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCACCCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698708" ref_strand="+" ref_description="SGN-E698708 [FA07BD09]">
      <seq>ccgtttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggctgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgaccgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcacaacttcagggcattctacttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1984" stop="729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="1032" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="750" g_stop="737" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="670" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698708" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="1032"/>
          <exon e_start="750" e_stop="737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGC</genome_strand>
        <mrna_strand>CCGTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACCGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCACAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721516" ref_strand="+" ref_description="SGN-E721516 [FC14AF08]">
      <seq>ctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaaaagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaagccgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaaaagctagtacccgtctccattaacgatctcaaccatcggtccaaccagcttgatcaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1924" stop="736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1624" g_stop="1036" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E721516" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1624" e_stop="1036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTT</genome_strand>
        <mrna_strand>CTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAAAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGCCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAAAGCTAGTACCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723199" ref_strand="+" ref_description="SGN-E723199 [FC19CH11]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1966" stop="754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1666" g_stop="1054" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E723199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1666" e_stop="1054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAA</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709599" ref_strand="+" ref_description="SGN-E709599 [FA52CB08]">
      <seq>caattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgacccagcaccagaaggtccaccgcattcgccaaggcgacgccgtggcaattccagctggtgctgctcattggtgctacaccgacggtgaggaagagctagtacccgtctccattaacgatctcaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1967" stop="762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1667" g_stop="1066" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E709599" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1667" e_stop="1066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGA-CCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAA</genome_strand>
        <mrna_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGCCGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACACCGACGGTGAGGAAGAGCTAGTACCCGTCTCCATTAACGATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724854" ref_strand="+" ref_description="SGN-E724854 [FC25BD08]">
      <seq>ctcatctttgtattttttatattatataatcaatcattaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1997" stop="799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1697" g_stop="1099" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E724854" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1697" e_stop="1099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGA</genome_strand>
        <mrna_strand>CTCATCTTTGTATTTTTTATATTATATAATCAATCATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271097" ref_strand="+" ref_description="SGN-E271097 [cLEM-22-M13]">
      <seq>tattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1978" stop="809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1678" g_stop="1109" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E271097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1678" e_stop="1109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACG</genome_strand>
        <mrna_strand>TATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710971" ref_strand="+" ref_description="SGN-E710971 [FA57CC03]">
      <seq>taatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggcgctgctcattggtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1971" stop="814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1671" g_stop="1114" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E710971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1671" e_stop="1114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTA</genome_strand>
        <mrna_strand>TAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGCGCTGCTCATTGGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556030" ref_strand="+" ref_description="SGN-E556030 [cTSD-2-D10]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcgagttctactaagggcttgttagctttactcttcgctgcttttctcttaactgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556030" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGAGTTCTACTAAGGGCTTGTTAGCTTTACTCTTCGCTGCTTTTCTCTTAACTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554767" ref_strand="+" ref_description="SGN-E554767 [cTSC-5-F24]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcataccttccaggctggccgaatggcatgtgaagagaggggtgaacaccgcggatacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtgacaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554767" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCATACCTTCCAGGCTGGCCGAATGGCATGTGAAGAGAGGGGTGAACACCGCGGATACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGACAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554911" ref_strand="+" ref_description="SGN-E554911 [cTSC-5-M7]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcacctgaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554911" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCTGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555827" ref_strand="+" ref_description="SGN-E555827 [cTSD-1-I21]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555863" ref_strand="+" ref_description="SGN-E555863 [cTSD-1-K17]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555968" ref_strand="+" ref_description="SGN-E555968 [cTSD-1-P3]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E555968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556713" ref_strand="+" ref_description="SGN-E556713 [cTSD-4-F6]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556749" ref_strand="+" ref_description="SGN-E556749 [cTSD-4-H23]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556882" ref_strand="+" ref_description="SGN-E556882 [cTSD-4-O16]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1970" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1130" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554844" ref_strand="+" ref_description="SGN-E554844 [cTSC-5-J21]">
      <seq>ccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1942" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1642" g_stop="1130" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E554844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1642" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>CCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556236" ref_strand="+" ref_description="SGN-E556236 [cTSD-2-N17]">
      <seq>agtcttatccaaatttttctggagttagtcgctacccatgatgggtctctactaaggatcttgttaactttactctatctctgcttttctcttatctgcagcaaatgcatatagacaatatccggtgggcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1934" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1636" g_stop="1130" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="547" r_length="512" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E556236" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1636" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATG-GCGGTCTCTACT-AGGGTCTTGTTAGCTTTACTCT-TCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCC-GT-TTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>CCATGATGGGTCTCTACTAAGGATCTTGTTAACTTTACTCTATCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGGTGGGCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723796" ref_strand="+" ref_description="SGN-E723796 [FC21DH06]">
      <seq>gcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1892" stop="827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1592" g_stop="1130" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E723796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1592" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>GCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698378" ref_strand="+" ref_description="SGN-E698378 [FA06AE05]">
      <seq>aaactccttagccatggcggtctctactatggtcttgttagctttactcttctctgcttttctcttatctgcagcacatgcatatagacaatatccgtttccgcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacacaggcttactggaagccagccctctcaccgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagcgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatccagcacggcaggggattgattaatgtgattaaccctggctgtgccgagactttccagtctcagaccttccaggatggccgaatggcacgtgaatagaggggtgaacgccgcggaaacgaccagcaccagatggtccaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1947" stop="867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1647" g_stop="1167" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698378" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1647" e_stop="1167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGC</genome_strand>
        <mrna_strand>AAACTCCTTAGCCATGGCGGTCTCTACTATGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCACATGCATATAGACAATATCCGTTTCCGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACACAGGCTTACTGGAAGCCAGCCCTCTCACCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGCGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCCAGCACGGCAGGGGATTGATTAATGTGATTAACCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGATGGCCGAATGGCACGTGAATAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGATGGTCCACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706839" ref_strand="+" ref_description="SGN-E706839 [FA31AC12]">
      <seq>atattatataatcaattactaataaacaataaaaactccttagccatggcggtctctactagggccttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggccagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcacagggcgggtaccactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgacgaatgttattcgtcaaaattctctcctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcacgggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccacgctggccgaatggcaggtgaaaacaggggtgaacgccgcgcaaaccaccaccaccagaaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1979" stop="873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1173" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E706839" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTA-CACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCT-CTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTC</genome_strand>
        <mrna_strand>ATATTATATAATCAATTACTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGCCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGCCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCACAGGGCGGGTACCACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGACGAATGTTATTCGTCAAAATTCTCTCCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCACGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCACGCTGGCCGAATGGCAGGTGAAAACAGGGGTGAACGCCGCGCAAACCACCACCACCAGAAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699191" ref_strand="+" ref_description="SGN-E699191 [FA09AA10]">
      <seq>caccctttattagtaataaactataaaaactccttagccatggcggcctctactagggtcttgttaactttactcttctctgcttttctcttatcagcagcaaatgcatatagacaatatccgtttcatcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagacagagggcggttacactgaggtgtgggatgagaatgaggagcaattccagtgtgttgcagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagctaggcaggagattgattaatgtgattaaccctggttgcgcagagactttccagtctcataccttcccggctggtcgaatggcatgtgaagagaggggtgaacgccgcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1965" stop="893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1673" g_stop="1193" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699191" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1673" e_stop="1193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAA</genome_strand>
        <mrna_strand>CACCCTTTATTAGTAATAAACTATAAAAACTCCTTAGCCATGGCGGCCTCTACTAGGGTCTTGTTAACTTTACTCTTCTCTGCTTTTCTCTTATCAGCAGCAAATGCATATAGACAATATCCGTTTCATCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGACAGAGGGCGGTTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGCAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCTAGGCAGGAGATTGATTAATGTGATTAACCCTGGTTGCGCAGAGACTTTCCAGTCTCATACCTTCCCGGCTGGTCGAATGGCATGTGAAGAGAGGGGTGAACGCCGCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699669" ref_strand="+" ref_description="SGN-E699669 [FA10DE03]">
      <seq>ccttattaataaacaataaaaactccttagccatggcggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctccacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggaccaattccagtgtgttggagttgctcctatgacgaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattactgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1964" stop="899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1666" g_stop="1199" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699669" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1666" e_stop="1199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCC</genome_strand>
        <mrna_strand>CCTTATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCCACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGACCAATTCCAGTGTGTTGGAGTTGCTCCTATGACGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTACTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724093" ref_strand="+" ref_description="SGN-E724093 [FC23AB06]">
      <seq>ataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgagtggtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgataaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccaaatggcaggtgaaaagaggggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1958" stop="903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1658" g_stop="1203" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E724093" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1658" e_stop="1203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAA</genome_strand>
        <mrna_strand>ATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGTGGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATAAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCAAATGGCAGGTGAAAAGAGGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699312" ref_strand="+" ref_description="SGN-E699312 [FA09CC04]">
      <seq>ctttactcttctcctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgacaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcctcaaaattctctctctttgcctaattttcatcccatgcctcgcttgcgtttatatcgagcaaggcaggggatcgattagtgtgattaacccctggctgtgccgagactttccagtctcagaccttccacgttggccgaatggcaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1906" stop="916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1606" g_stop="1216" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E699312" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1606" e_stop="1216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACTCTTCT-CTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTG-GTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAA-CCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGA</genome_strand>
        <mrna_strand>CTTTACTCTTCTCCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGACAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCCTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGCGTTTATATCGAGCAAGGCAGGGGATCGATTAGTGTGATTAACCCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCACGTTGGCCGAATGGCAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719908" ref_strand="+" ref_description="SGN-E719908 [FC09AH06]">
      <seq>agctttactcttctctgcttttctcttatctgcagcaaatgcatatagactatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgccaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1908" stop="924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1608" g_stop="1224" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E719908" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1608" e_stop="1224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATG</genome_strand>
        <mrna_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACTATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGCCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719665" ref_strand="+" ref_description="SGN-E719665 [FC08CB03]">
      <seq>ttatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttctgcagggtcagcacggtcaaagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1976" stop="937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1676" g_stop="1237" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E719665" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1676" e_stop="1237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCA</genome_strand>
        <mrna_strand>TTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCTGCAGGGTCAGCACGGTCAAAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698704" ref_strand="+" ref_description="SGN-E698704 [FA07BD02]">
      <seq>ttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagcgtgttggacttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1910" stop="990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1610" g_stop="1290" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698704" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1610" e_stop="1290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTG</genome_strand>
        <mrna_strand>TTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGCGTGTTGGACTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698705" ref_strand="+" ref_description="SGN-E698705 [FA07BD04]">
      <seq>ccccttattttttatattatataatcaattagtaataaacaaccccaactccttagccatggcggtctctactagggtctctgttagctttactcttctctgcttttctcttatctgcaccaaatgcatatacacaatatccgcttcagcagggtcagcacggtcacacaagcattcctctgactcaagctcaacaatgccgcttacacaggcttactggaagccagccctctcagcgcattgactcagagggcgggtacactgaggtgtgggatgacaatgacgagcacttccagtgtgctggagttgctcctatgaggattgttattcgctaaaattctctctctttgcctaattttcttcccatgcctcgcttggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1987" stop="1014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1692" g_stop="1313" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698705" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1692" e_stop="1313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCT-TGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTT</genome_strand>
        <mrna_strand>CCCCTTATTTTTTATATTATATAATCAATTAGTAATAAACAACCCCAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTCTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCACCAAATGCATATACACAATATCCGCTTCAGCAGGGTCAGCACGGTCACACAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACACAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGACTCAGAGGGCGGGTACACTGAGGTGTGGGATGACAATGACGAGCACTTCCAGTGTGCTGGAGTTGCTCCTATGAGGATTGTTATTCGCTAAAATTCTCTCTCTTTGCCTAATTTTCTTCCCATGCCTCGCTTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705646" ref_strand="+" ref_description="SGN-E705646 [FA27DA03]">
      <seq>cggtttttaagaaatagaaaacaaaatggacataagtctgctgaaaagaaacgcattctttaaactacctaatttttgtcctctttttgcactaaactatagcgtaaaatttaagccagtgaatttatattattacaccaatgactataactactagtctactactactagtactatttatatatcttatatctcagccttttgttatatttctccccttattcataactgaatttgcattgtttcaaattcaatcaccatgtattgcttaaacttgcgtagagtactccttccaactcaaaaaatgtggaagtttttttccaccaaattacaaatcaatttccacaaagtactcaatagatccaaagtcattaagaaagccaagaatccaaatcctttatgcatcaagaaactagccccgtctcttgtctttcgagttcaattcaaaactaaacgttcaaacaataagttcaaatacaagtcgaaattcagacctactctgaaatttcacaagaaatcagcaccagtatatatagatcaacttttcattgagaatatatctgattctgtggtgaagaacaactttggccaaactagtatgattacgacaaagaagaaggagcataaacaagtttgcataacggaaaccgaacaaggtgagataatccatgaaggggaaagtagtagtagtagtagtagtgtaacgaatgatgagatgtgggaatcgttgacattggcatctccacaattgcattgtattaatgaaagagcagaagagttcatagctaaatttcgtgcagacatgctgcgtcaagagaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="4559" stop="5984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4859" g_stop="5684" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E705646" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4859" e_stop="5684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</genome_strand>
        <mrna_strand>CGGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746860" ref_strand="+" ref_description="SGN-E746860 [GI|47104422]">
      <seq>tatttccgactcgaattctaattgcgggccggagagtattatctttctagggtttcgtcaatccaaacatttttcctctcaattttggtttgcagaagtaattatggctactgcatcaggggcatttaaatctagggaggatcacaggaaacagttggaattggaagaagcaagaaaggctggtcttgctccggctgagttggacgaagatggaaaagagattaatcctcatattcctcagtatatgtcttccgctccttggtaccttaatgcagaaagaccaagtttgaaacatcaaaggaactggaaatcagaccccaattacacaaaatcatggtatgacagaggtgcgaagatatatcaggctgacaagtataggaagggtgcatgtgaaaactgtggagcaatgtcccatgacactaggtcatgtatggaaaggccacgcaaactgggagcaaaatggacagggaaacacattgctcctgatgagaagatagagcagtttgagctggactatgatggtaaaagggatcgttggaatggttatgatgctgcttcttatgcccatgtcattgaacgatatgaagcaagggatgaagcaagaaggaaatacctcaaagagcaacaacttaaaaaattggaagaaaaaaataacaaggatgacaaagaaggaggtgatagtgacaatgaggattgtgaggatgctttgaaggtagacgaagcgaaggttgatgaaagcaagcaaatggattttgccaaagttgagaagcgtgtgcggaccactggtggtggtagcacagggactgttaggaacctgcgtattcgggaggatacggctaaatatcttctcaatcttgatgtaaattcagcacactatgatcccaaaacacggtccatgcgtgaagatcctcttcctgatatggacccgaacgaaaagttctatgctggcgataaccaaaacagagttagtggtcaagcattggagttcaagcagcttaatattcatgcctgggaggcttttgataagggtcatgatgttcatatgcaagcagctccatcccaggcagaattgctctacaaaaattttaagattaacaaggagaaattgaaggtgcaaactaaggatgatgtcatggagaagtatggcaatgcagctagtgaggacacacttccaagagaactcctactgggtcaaagtgagaaagaggttgaatatgatcgtgctggtaggattgtgaagggacaggagatgtcacttcctagaagcaaatatgaagaggatgtttacatcaataaccacaccactgtttggggttcatggtggaaagatcaccaatggggttataagtgctgcaaacaaacaatcagaaatagctattgtactggtgctgctggaattgaagcagcagaagcctctgctggtcttatgaaagccaacattgctcgtaaggaggctgctgaagatacacacgtgcctgtcgaggagaagaggcaagctacttgggggactgaagtaccggaagatctgatactagaccagaaaaagctcactgaagctataaagaaggaagaggagaggagacgagaagagaaagatgaacggaagaggaaatataatgttaaatataatgatgaggttacacctgaagaaatggaggcatataggatgaagcgggttcaccaagatgatccaatgaaggacttccttcactgaatcgtagatatggccaaattgttcacctcttagggaaaacatcagttgggaccatgtgccagtcttaggtgaaattgggtatgatattttcttagtcgaaaattgtattgtgatgaagagtctgtgttgggattgcttgagatctatttcttctttgatttagtaccttaaagttgtatacaactgcacgacacactctttaagaacatatgtacaataagatacctaagaattgggaagcatctatgtacgtgtaatactgtattcaccggtttgtggttgtaattcaggcaaagtctgtttgtttgaagttctttctctggttctgtattagtgtttgccttctttctgcgtttgtgtgtgtcttcagctttgtgaatgtgacagacttctaatgcattggctcattgaataaaaattctgttattccattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="13086" stop="6115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12715" g_stop="12679" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="119" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78">
            <donor d_prob="0.711" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12600" g_stop="12437" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="283" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12354" g_stop="12242" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="396" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11902" g_stop="11489" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="810" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11488" i_stop="11379" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11378" g_stop="11243" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="946" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11242" i_stop="11151" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11150" g_stop="10851" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1246" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8631" g_stop="8415" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1247" r_stop="1463" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7551" g_stop="7448" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1464" r_stop="1567" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7089" g_stop="7021" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1568" r_stop="1636" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6938" g_stop="6411" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1637" r_stop="2163" r_length="527" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E746860" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>2082</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12715" e_stop="12679"/>
          <exon e_start="12600" e_stop="12437"/>
          <exon e_start="12354" e_stop="12242"/>
          <exon e_start="11902" e_stop="11489"/>
          <exon e_start="11378" e_stop="11243"/>
          <exon e_start="11150" e_stop="10851"/>
          <exon e_start="8631" e_stop="8415"/>
          <exon e_start="7551" e_stop="7448"/>
          <exon e_start="7089" e_stop="7021"/>
          <exon e_start="6938" e_stop="6411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAGGTGTGCAGTTATTTTAGACCTAGCTTGTAATTTTGTGTTCGATTCATTCGTTATTTTTATAAATGTTTGGAATTTCAGGTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCAGTATGTATCTCTTCTTTATTTTGGGGCTTTATGGTTTTCATGCTCAAAATTTGACCTTTTTCAATTGTTTCGGTGTTTGCAGAGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAAGTATGTGTGTTTCCTTGCTTCTTTGGGTGTTTAAGTTTGTGTGTTTCTGTCTGTGGCATATGCTTAATTTCATTTGTCATTCATTGGCACTTAGTAGCTCATCTTGCTTGCTTTGGAGTTCAAAAGAAATCCAACTATGAAGACATTTTACTTTGGAAATTTAAATTTTGAACTTGTATGCTTGCTGCCTTCCTTAAATGTCTTGGTTCATGTGATAAGCCATTTTCTTATAAGTTCCATATGGATTTCATTAGATGCCTTGGTTCAAGTGATTAGCCATTTTCATGAAGGTTATTCAAGGAATCCTGAAAGATGAATGTACATTTGTTTTTTGTGCAGCTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAGGTAAGTTTTTCTTAATATCTTTTCTGGGTCATTATGGTGGTTAGGTTGTTGGAATTTTTCGAATATTGTGGTTGAATGCTATGCTCTATTGATGCATCTTTCATGACCAGGAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCTGTAAGTGCTCCTAATCAAAAATGGGATTTTACTCTCTCTCTATCTTTTGTTATATTTATGTTTATTAACTCATTGGTCGTTTTTCTGTTTAGGGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAGGTAACTGTTTACTTAATAGCTGCCTAAAATTGATTGGAGTACTATTCAAGTTTAGGTTTTTCTTGGGGGGTTTGCGGGGGGGGGGGGGGTAATATCTGTTGATATATTTCTATTTTTTTTAATCATTATTTGTTAAATAGATAAACACACTTTTTGTCTCAAAAAAGAAAGTGAAAAATTCTTGAGTATGTTGTCTAAATATTTGTTTGTGCCGGTGTTGGATTAGTTATATAACCAACCTAACTTGCTTGGGATTGAGGCATAGTTATAGTTTTGTATTAAATTGAGTGTCATGGATGGTTAAAGTTATAGTTGTCTGTACTTTCTCATCCCTTGGAGCAATTCTATGGGGGAGACTAGGTACTTCAAAATATTTGCATAGAACACTGATTCTTTTCGAGGATCTATTTCAGTGAAGCAATAACCTCTGTATATATTGATCAGGCTATATCATGATTCAAGTCTAGCATGAAGCATCTCCGTCTTTGAAGTTAGCCAATATATCCAAAATATAATTGCAATCTTAATACTTTTAACTGCTCTACTGTAATTTAAGATCTTTTGTTGATGCTATATCATTCCTTTGATTTTTAAGGAAAGGAACGTGTGTTCATCTAAAAACAAATGTTTCACCGAAGGGAGTTGGAATTCGGAAAGAAAGAAAAATACAAAATATTCTCCCATTGCCTCTTCTAGGGCAGCGTAACTAATTGGGGATTCAAAACTTCCCTTATCTGAATGAGGTTTTTCGAATATTTCTAATTATGTATATACATATTAATAATATCTTAACTTGTAATTAGAGTTTGTTTCTGTTGTTTTTGAACATATAAATTACAATATTTTCTTTGATGTAAGTTTGAACCAAAAGATAGATTGGTTGATCCTCGTCGAACCTCGTCAATCTTTCTGGGAGGGACGGTGTAGATTATACATGTATTTTTGGTGACAGTAGTGGACTACTACCATTCAAAGGCTGGATCAAGATAGTATGTCATAAGAATATAAAATTAACCTCTTTCAAAATCATGTCCTAAATAGACATCTATTCAGTTGCTGCTGCCCCTGATGTATATAGTGGTAAATCAAATTTTAAAGCTGCTTTTCAGTTGTCTGTAATAATCACAACAAAAATGACGCCTAAATTTTGAACTAGTTGGGGTTGGCTGAATGGATTCTCTACGTCATGCTGCTCTACTGGACATAGTTTACTCATTCACTGACCATCATCACCACTTCCCTCTGAAGGTGTGTAACTGTCGAATTGAAAGGGAAGACTAGAAATGAAGTGAATGGAAGAGGGATAGCATGAAGGTTTATATATATATACTGTAAAAGAAAAATTCTAAAACTAGATTCTTTTGTATTTAGCTTGTATGGTCTAGAACTAAGCTCCACCACTGACTGGAATGGGGAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTTTCAAGCGAAGATTTAAAAAAAAACATGTACACTAGGTTGAAGTGGTGTTTTTGACTACTAACATAATGGTAAAATTAAGTCTGTTAGGTGTCGTTTGGTTTGAAGACAAGTTATGTGGGGACTAATTATCTTATAAGTTATGATGAGATTTAATTTTTATTGGTTGTTTGGTTTGTCAAATATGCTTGGCATAATTTTTTAGAATAAGTTGTTTGGTTACAAAAATGCCCTCTTAAGAATAAGTTTGTTTATAAAAGAGGGTTTAAGGGGTACTTCTGTTATTTAACATCTTTACCTGGGATACGTTATTCCGTGATTATTGTTTCACCCACAAGTAGTGATAACTTATCCCAGTCATAATTATTGATCCTGGGATAGTTTTTCCAACACTTCGTTATCAAATAATGAATTTAGGGGTACTAAAAACTTATCCCGAGATTATTTTCTTTATCCATCACACCAAATGACCCCTTAAGGTCTCAATTTTCCTTTTACATAAGGATAAACAATTAACTTGGATTTATTGAAGGCAATATTTTTTGATGTGCCATTTATTGTCTGAGAGAGATGATAGTTGTTCCTACTTATGGAACGGGGTTCGGAGTTCTTAGCTTGTTCAGTCTATTTGTCAAGTTCTATGTTTTCTTTTGTGCATAAATGACGAAGAATTATTTGTATTCGAATAGATGGAAGGGAGTGTGCAGTCAAATATTTCCGTCATACTTGTTTGTTTCTATTGCCTAATTCAGTAACTTGGTATCTGCAGGAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAGGTATATTGAAACTGCTGACATGTCTCGAAATTATCATACACCGCTTCCATAACAATCTTACTGTCATAATTCAATGTAGTTTGCTTTAAGATCTTATACCTGCTAATTTTAAGCTCACAACCTTCTGCTGAGTAGTCAGAAAGTAATTGTTTTCCGTACATGTTGTTGGAAGTTGTACTTCAACTCTTGCATTAGTGGTTTTGTCAGTACCTGTCATTGTTTTACGGATCAAATAAGTAATTTCCATTGTTTGCACGCCCTATAGAACTAGAATTGTCTCTTTTTTTGAAAAAAATGAAGTAATAGATTTTATAGGTGCATCAAGAAAATGCAATGAGTACAGATGATAGTAAGTACAAAGGAGAATTTGCTAGCTCCATTACATGAGGTTCTATGCTAGAGATATGTAGCGTAGAACTAGAATGTCTTGGATTTGGTGATGGTAAGGTTTTCTTGGATTTAGAAGAAAAATGATCCTTTTGGTGTTTAGAAGAAGAATGATGGATCAGTTTATCGGTAAACATATTCATGATCAGGATAGAGCATATGGACCTTTGGACCTTTTTTAGCTTTCTGTTGAAGTGGTAAGCATGAACTCTAGGGTTTTAGTGATTACAAACATAACGTCTACATTTCGAGACCATCTACTTAGCTTTGAATTTTTAGTGGATAGCTCCTTGGTTTCTGCTTGAATTAGCAGTCAGTTTAAACTTCATCTTATTTAATGTAAGAGTTGGCCAGCAGAGCTGCTGAGAGGATTGTTTCATTGAAGACCATATCAAGCACAATCAAAGCACATTTTTGGCAACTGTTTCTTCAGTAATTGATAACATTGTTTTTCTTTTTCTCAATATCTGATCCAGATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAGGTATGCATATAAACCTATGCATGGTGCTACCTCCGTTTTTGAACTTCATGCTAATATGAATTTTGTCAGTGTATTTCCTGCTTCAAGTAATTTATTTTTTAGGAGGGAATAGTTGGTGAGGGTAGAGTTTTGGGGGTTGATGCGTGGAGATATCCAACACCACCACCAAAGAAAAAAGGAGAGAGACGCTTAGAGGAGGTGGGGAGAGATGTTTCATAGGGGACTGCCAGAGGTTGGGGTTGGGAACACTGATAACCTGACTGGATCCGTTCTTTTGACAGCTATGTCGATTCTCAGTTGTCTCTATAGCTTCTGTTTTTCTGATGTTCTGATCAAATTTATTTTGCTTTTTGAACAGGAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAGGTACATCTATGTCTCCATTTTGTCTTTCTGATGGTGGTTGTCTTCTTCTTCATGGTCTTTCTAACAACATTTATCTGTACAGGTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTACTGTTTGCCTTCTTTCAGCG-TT-TGTGTGTCTTCAGCTTTGTGAATGTGACAGATTACTAATGCATTGGCTCATTGAATAAAAAATTCTGTTGTTCCATTCAACGATCAAAATTGA</genome_strand>
        <mrna_strand>TTTTGGTTTGCAGAAGTAATTATGGCTACTGCATCAG..............................................................................GGGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA..................................................................................AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCCAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA...................................................................................................................................................................................................................................................................................................................................................CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCATGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAG..............................................................................................................GAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCT............................................................................................GGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACACGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAG..................................................................................GTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTAGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCACGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAA--TACTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGTCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTAGTGTTTGCCTTCTTTCTGCGTTTGTGTGTGTCTTCAGCTTTGTGAATGTGACAGACTTCTAATGCATTGGCTCATTGAAT-AAAAATTCTGTTATTCCATTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249155" ref_strand="-" ref_description="SGN-E249155 [cLEF-50-E1]">
      <seq>ctgctggaattgaagcagcagaagcctctgctggtcttatgaaagccaacattgctcgtaaggaggctgctgaagatacacatgtgcctgtcgaggagaagaggcaagctacttgggggactgaagtaccggaagatctgatactagaccagaaaaagctcactgaagctataaagaaggaagaggagaggagacgagaagagaaagatgaacggaagaggaaatataatgttaaatataatgatgaggttacacctgaagaaatggaggcatataggatgaagcgggttcaccaagatgatccaatgaaggacttccttcactgaatcgtagatatggccaaattgttcacctcttagggaaaacatcagttgggaccatgtgccagtcttaggtgaaattgggtatgatattttctttgtcgaaaattgtattgtgatgaagagtctgtgttgggattgcttgagatctatttcttctttgatttagtaccttaaagttgtatacaactgcatgacacactctttaagaacatatgtacaataagatacctaagaattgggaagcatctatgtacgtgtaatgtgctgtattcaccggtttgtggttgtaattcaggcaaagcctgtttgtttgaagttctttctctggttctgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="8789" stop="6226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8489" g_stop="8415" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7551" g_stop="7448" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="179" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7089" g_stop="7021" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="248" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6938" g_stop="6517" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="670" r_length="422" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E249155" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8489" e_stop="8415"/>
          <exon e_start="7551" e_stop="7448"/>
          <exon e_start="7089" e_stop="7021"/>
          <exon e_start="6938" e_stop="6517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAGGTATATTGAAACTGCTGACATGTCTCGAAATTATCATACACCGCTTCCATAACAATCTTACTGTCATAATTCAATGTAGTTTGCTTTAAGATCTTATACCTGCTAATTTTAAGCTCACAACCTTCTGCTGAGTAGTCAGAAAGTAATTGTTTTCCGTACATGTTGTTGGAAGTTGTACTTCAACTCTTGCATTAGTGGTTTTGTCAGTACCTGTCATTGTTTTACGGATCAAATAAGTAATTTCCATTGTTTGCACGCCCTATAGAACTAGAATTGTCTCTTTTTTTGAAAAAAATGAAGTAATAGATTTTATAGGTGCATCAAGAAAATGCAATGAGTACAGATGATAGTAAGTACAAAGGAGAATTTGCTAGCTCCATTACATGAGGTTCTATGCTAGAGATATGTAGCGTAGAACTAGAATGTCTTGGATTTGGTGATGGTAAGGTTTTCTTGGATTTAGAAGAAAAATGATCCTTTTGGTGTTTAGAAGAAGAATGATGGATCAGTTTATCGGTAAACATATTCATGATCAGGATAGAGCATATGGACCTTTGGACCTTTTTTAGCTTTCTGTTGAAGTGGTAAGCATGAACTCTAGGGTTTTAGTGATTACAAACATAACGTCTACATTTCGAGACCATCTACTTAGCTTTGAATTTTTAGTGGATAGCTCCTTGGTTTCTGCTTGAATTAGCAGTCAGTTTAAACTTCATCTTATTTAATGTAAGAGTTGGCCAGCAGAGCTGCTGAGAGGATTGTTTCATTGAAGACCATATCAAGCACAATCAAAGCACATTTTTGGCAACTGTTTCTTCAGTAATTGATAACATTGTTTTTCTTTTTCTCAATATCTGATCCAGATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAGGTATGCATATAAACCTATGCATGGTGCTACCTCCGTTTTTGAACTTCATGCTAATATGAATTTTGTCAGTGTATTTCCTGCTTCAAGTAATTTATTTTTTAGGAGGGAATAGTTGGTGAGGGTAGAGTTTTGGGGGTTGATGCGTGGAGATATCCAACACCACCACCAAAGAAAAAAGGAGAGAGACGCTTAGAGGAGGTGGGGAGAGATGTTTCATAGGGGACTGCCAGAGGTTGGGGTTGGGAACACTGATAACCTGACTGGATCCGTTCTTTTGACAGCTATGTCGATTCTCAGTTGTCTCTATAGCTTCTGTTTTTCTGATGTTCTGATCAAATTTATTTTGCTTTTTGAACAGGAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAGGTACATCTATGTCTCCATTTTGTCTTTCTGATGGTGGTTGTCTTCTTCTTCATGGTCTTTCTAACAACATTTATCTGTACAGGTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTACTGTTTGCC</genome_strand>
        <mrna_strand>CTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAG..................................................................................GTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343631" ref_strand="+" ref_description="SGN-E343631 [cTOF-20-N21]">
      <seq>gataaccaaaacagagttagtggtcaagcattggagttcaagcagcttaatattcatgcctgggaggcttttgataagggtcatgatgttcatatgcaagcagctccatcccaggcagaattgctctacaaaaattttaagattaacaaggagaaattgaaggtgcaaactaaggatgatgtcatggagaagtatggcaatgcagctagtgaggacacacttccaagagaactcctactgggtcaaagtgagaaagaggttgaatatgatcgtgctggtaggattgtgaagggacaggagatgtcacttcctagaagcaaatatgaagaggatgtttacatcaataaccacaccactgtttggggttcatggtggaaagatcaccaatggggttataagtgctgcaaacaaacaatcagaaatagctattgtactggtgctgctggaattgaagcagcagaagcctctgctggtcttatgaaagccaacattgctcgtaaggaggctgctgaagatacacatgtgcctgtcgaggagaagaggcaagctacttgggggactgaagtaccggaagatctgatactagaccagaaaaagctcactgaagctataaagaaggaagaggagaggagacgagaagagaaagatgaacgggagaggaaatataatgttaaatataatgatgaggttacacctgaagaaatggaggcatataggatgaaagcggttcaccaagatgatccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="11447" stop="6579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11147" g_stop="10851" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8631" g_stop="8415" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="514" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7551" g_stop="7448" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="618" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7089" g_stop="7021" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="687" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6938" g_stop="6879" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="747" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E343631" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11147" e_stop="10851"/>
          <exon e_start="8631" e_stop="8415"/>
          <exon e_start="7551" e_stop="7448"/>
          <exon e_start="7089" e_stop="7021"/>
          <exon e_start="6938" e_stop="6879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAGGTAACTGTTTACTTAATAGCTGCCTAAAATTGATTGGAGTACTATTCAAGTTTAGGTTTTTCTTGGGGGGTTTGCGGGGGGGGGGGGGGTAATATCTGTTGATATATTTCTATTTTTTTTAATCATTATTTGTTAAATAGATAAACACACTTTTTGTCTCAAAAAAGAAAGTGAAAAATTCTTGAGTATGTTGTCTAAATATTTGTTTGTGCCGGTGTTGGATTAGTTATATAACCAACCTAACTTGCTTGGGATTGAGGCATAGTTATAGTTTTGTATTAAATTGAGTGTCATGGATGGTTAAAGTTATAGTTGTCTGTACTTTCTCATCCCTTGGAGCAATTCTATGGGGGAGACTAGGTACTTCAAAATATTTGCATAGAACACTGATTCTTTTCGAGGATCTATTTCAGTGAAGCAATAACCTCTGTATATATTGATCAGGCTATATCATGATTCAAGTCTAGCATGAAGCATCTCCGTCTTTGAAGTTAGCCAATATATCCAAAATATAATTGCAATCTTAATACTTTTAACTGCTCTACTGTAATTTAAGATCTTTTGTTGATGCTATATCATTCCTTTGATTTTTAAGGAAAGGAACGTGTGTTCATCTAAAAACAAATGTTTCACCGAAGGGAGTTGGAATTCGGAAAGAAAGAAAAATACAAAATATTCTCCCATTGCCTCTTCTAGGGCAGCGTAACTAATTGGGGATTCAAAACTTCCCTTATCTGAATGAGGTTTTTCGAATATTTCTAATTATGTATATACATATTAATAATATCTTAACTTGTAATTAGAGTTTGTTTCTGTTGTTTTTGAACATATAAATTACAATATTTTCTTTGATGTAAGTTTGAACCAAAAGATAGATTGGTTGATCCTCGTCGAACCTCGTCAATCTTTCTGGGAGGGACGGTGTAGATTATACATGTATTTTTGGTGACAGTAGTGGACTACTACCATTCAAAGGCTGGATCAAGATAGTATGTCATAAGAATATAAAATTAACCTCTTTCAAAATCATGTCCTAAATAGACATCTATTCAGTTGCTGCTGCCCCTGATGTATATAGTGGTAAATCAAATTTTAAAGCTGCTTTTCAGTTGTCTGTAATAATCACAACAAAAATGACGCCTAAATTTTGAACTAGTTGGGGTTGGCTGAATGGATTCTCTACGTCATGCTGCTCTACTGGACATAGTTTACTCATTCACTGACCATCATCACCACTTCCCTCTGAAGGTGTGTAACTGTCGAATTGAAAGGGAAGACTAGAAATGAAGTGAATGGAAGAGGGATAGCATGAAGGTTTATATATATATACTGTAAAAGAAAAATTCTAAAACTAGATTCTTTTGTATTTAGCTTGTATGGTCTAGAACTAAGCTCCACCACTGACTGGAATGGGGAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTTTCAAGCGAAGATTTAAAAAAAAACATGTACACTAGGTTGAAGTGGTGTTTTTGACTACTAACATAATGGTAAAATTAAGTCTGTTAGGTGTCGTTTGGTTTGAAGACAAGTTATGTGGGGACTAATTATCTTATAAGTTATGATGAGATTTAATTTTTATTGGTTGTTTGGTTTGTCAAATATGCTTGGCATAATTTTTTAGAATAAGTTGTTTGGTTACAAAAATGCCCTCTTAAGAATAAGTTTGTTTATAAAAGAGGGTTTAAGGGGTACTTCTGTTATTTAACATCTTTACCTGGGATACGTTATTCCGTGATTATTGTTTCACCCACAAGTAGTGATAACTTATCCCAGTCATAATTATTGATCCTGGGATAGTTTTTCCAACACTTCGTTATCAAATAATGAATTTAGGGGTACTAAAAACTTATCCCGAGATTATTTTCTTTATCCATCACACCAAATGACCCCTTAAGGTCTCAATTTTCCTTTTACATAAGGATAAACAATTAACTTGGATTTATTGAAGGCAATATTTTTTGATGTGCCATTTATTGTCTGAGAGAGATGATAGTTGTTCCTACTTATGGAACGGGGTTCGGAGTTCTTAGCTTGTTCAGTCTATTTGTCAAGTTCTATGTTTTCTTTTGTGCATAAATGACGAAGAATTATTTGTATTCGAATAGATGGAAGGGAGTGTGCAGTCAAATATTTCCGTCATACTTGTTTGTTTCTATTGCCTAATTCAGTAACTTGGTATCTGCAGGAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAGGTATATTGAAACTGCTGACATGTCTCGAAATTATCATACACCGCTTCCATAACAATCTTACTGTCATAATTCAATGTAGTTTGCTTTAAGATCTTATACCTGCTAATTTTAAGCTCACAACCTTCTGCTGAGTAGTCAGAAAGTAATTGTTTTCCGTACATGTTGTTGGAAGTTGTACTTCAACTCTTGCATTAGTGGTTTTGTCAGTACCTGTCATTGTTTTACGGATCAAATAAGTAATTTCCATTGTTTGCACGCCCTATAGAACTAGAATTGTCTCTTTTTTTGAAAAAAATGAAGTAATAGATTTTATAGGTGCATCAAGAAAATGCAATGAGTACAGATGATAGTAAGTACAAAGGAGAATTTGCTAGCTCCATTACATGAGGTTCTATGCTAGAGATATGTAGCGTAGAACTAGAATGTCTTGGATTTGGTGATGGTAAGGTTTTCTTGGATTTAGAAGAAAAATGATCCTTTTGGTGTTTAGAAGAAGAATGATGGATCAGTTTATCGGTAAACATATTCATGATCAGGATAGAGCATATGGACCTTTGGACCTTTTTTAGCTTTCTGTTGAAGTGGTAAGCATGAACTCTAGGGTTTTAGTGATTACAAACATAACGTCTACATTTCGAGACCATCTACTTAGCTTTGAATTTTTAGTGGATAGCTCCTTGGTTTCTGCTTGAATTAGCAGTCAGTTTAAACTTCATCTTATTTAATGTAAGAGTTGGCCAGCAGAGCTGCTGAGAGGATTGTTTCATTGAAGACCATATCAAGCACAATCAAAGCACATTTTTGGCAACTGTTTCTTCAGTAATTGATAACATTGTTTTTCTTTTTCTCAATATCTGATCCAGATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAGGTATGCATATAAACCTATGCATGGTGCTACCTCCGTTTTTGAACTTCATGCTAATATGAATTTTGTCAGTGTATTTCCTGCTTCAAGTAATTTATTTTTTAGGAGGGAATAGTTGGTGAGGGTAGAGTTTTGGGGGTTGATGCGTGGAGATATCCAACACCACCACCAAAGAAAAAAGGAGAGAGACGCTTAGAGGAGGTGGGGAGAGATGTTTCATAGGGGACTGCCAGAGGTTGGGGTTGGGAACACTGATAACCTGACTGGATCCGTTCTTTTGACAGCTATGTCGATTCTCAGTTGTCTCTATAGCTTCTGTTTTTCTGATGTTCTGATCAAATTTATTTTGCTTTTTGAACAGGAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAGGTACATCTATGTCTCCATTTTGTCTTTCTGATGGTGGTTGTCTTCTTCTTCATGGTCTTTCTAACAACATTTATCTGTACAGGTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATG</genome_strand>
        <mrna_strand>GATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGGAGAGGAAATATAATGTTAAATATAATGATGAG..................................................................................GTTACACCTGAAGAAATGGAGGCATATAGGATGAAAGCGGTTCACCAAGATGATCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202273" ref_strand="+" ref_description="SGN-E202273 [cLEC-6-M7]">
      <seq>gtcatgatgttcatatgcaagcagctccatcccaggcagaattgctctacaaaaattttaagattaacaaggagaaattgaaggtgcaaactaaggatgatgtcatggagaagtatggcaatgcagctagtgaggacacacttccaagagaactcctactgggtcaaagtgagaaagaggttgaatatgatcgtgctggtaggattgtgaagggacaggagatgtcacttcctagaagcaaatatgaagaggatgtttacatcaataaccacaccactgtttggggttcatggtggaaagatcaccaatggggttataagtgctgcaaacaaacaatcagaaatagctattgtactggtgctgctggaattgaagcagcagaagcctctgctggtcttatgaaagccaacattgctcgtaaggaggctgctgaagatacacatgtgcctgtcgaggagaagaggcaagctacttgggggactgaagtaccggaagatctgatactagaccagaaaaagctcactgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="11368" stop="7158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11068" g_stop="10851" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8631" g_stop="8415" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="435" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7551" g_stop="7458" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="529" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E202273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11068" e_stop="10851"/>
          <exon e_start="8631" e_stop="8415"/>
          <exon e_start="7551" e_stop="7458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAGGTAACTGTTTACTTAATAGCTGCCTAAAATTGATTGGAGTACTATTCAAGTTTAGGTTTTTCTTGGGGGGTTTGCGGGGGGGGGGGGGGTAATATCTGTTGATATATTTCTATTTTTTTTAATCATTATTTGTTAAATAGATAAACACACTTTTTGTCTCAAAAAAGAAAGTGAAAAATTCTTGAGTATGTTGTCTAAATATTTGTTTGTGCCGGTGTTGGATTAGTTATATAACCAACCTAACTTGCTTGGGATTGAGGCATAGTTATAGTTTTGTATTAAATTGAGTGTCATGGATGGTTAAAGTTATAGTTGTCTGTACTTTCTCATCCCTTGGAGCAATTCTATGGGGGAGACTAGGTACTTCAAAATATTTGCATAGAACACTGATTCTTTTCGAGGATCTATTTCAGTGAAGCAATAACCTCTGTATATATTGATCAGGCTATATCATGATTCAAGTCTAGCATGAAGCATCTCCGTCTTTGAAGTTAGCCAATATATCCAAAATATAATTGCAATCTTAATACTTTTAACTGCTCTACTGTAATTTAAGATCTTTTGTTGATGCTATATCATTCCTTTGATTTTTAAGGAAAGGAACGTGTGTTCATCTAAAAACAAATGTTTCACCGAAGGGAGTTGGAATTCGGAAAGAAAGAAAAATACAAAATATTCTCCCATTGCCTCTTCTAGGGCAGCGTAACTAATTGGGGATTCAAAACTTCCCTTATCTGAATGAGGTTTTTCGAATATTTCTAATTATGTATATACATATTAATAATATCTTAACTTGTAATTAGAGTTTGTTTCTGTTGTTTTTGAACATATAAATTACAATATTTTCTTTGATGTAAGTTTGAACCAAAAGATAGATTGGTTGATCCTCGTCGAACCTCGTCAATCTTTCTGGGAGGGACGGTGTAGATTATACATGTATTTTTGGTGACAGTAGTGGACTACTACCATTCAAAGGCTGGATCAAGATAGTATGTCATAAGAATATAAAATTAACCTCTTTCAAAATCATGTCCTAAATAGACATCTATTCAGTTGCTGCTGCCCCTGATGTATATAGTGGTAAATCAAATTTTAAAGCTGCTTTTCAGTTGTCTGTAATAATCACAACAAAAATGACGCCTAAATTTTGAACTAGTTGGGGTTGGCTGAATGGATTCTCTACGTCATGCTGCTCTACTGGACATAGTTTACTCATTCACTGACCATCATCACCACTTCCCTCTGAAGGTGTGTAACTGTCGAATTGAAAGGGAAGACTAGAAATGAAGTGAATGGAAGAGGGATAGCATGAAGGTTTATATATATATACTGTAAAAGAAAAATTCTAAAACTAGATTCTTTTGTATTTAGCTTGTATGGTCTAGAACTAAGCTCCACCACTGACTGGAATGGGGAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTTTCAAGCGAAGATTTAAAAAAAAACATGTACACTAGGTTGAAGTGGTGTTTTTGACTACTAACATAATGGTAAAATTAAGTCTGTTAGGTGTCGTTTGGTTTGAAGACAAGTTATGTGGGGACTAATTATCTTATAAGTTATGATGAGATTTAATTTTTATTGGTTGTTTGGTTTGTCAAATATGCTTGGCATAATTTTTTAGAATAAGTTGTTTGGTTACAAAAATGCCCTCTTAAGAATAAGTTTGTTTATAAAAGAGGGTTTAAGGGGTACTTCTGTTATTTAACATCTTTACCTGGGATACGTTATTCCGTGATTATTGTTTCACCCACAAGTAGTGATAACTTATCCCAGTCATAATTATTGATCCTGGGATAGTTTTTCCAACACTTCGTTATCAAATAATGAATTTAGGGGTACTAAAAACTTATCCCGAGATTATTTTCTTTATCCATCACACCAAATGACCCCTTAAGGTCTCAATTTTCCTTTTACATAAGGATAAACAATTAACTTGGATTTATTGAAGGCAATATTTTTTGATGTGCCATTTATTGTCTGAGAGAGATGATAGTTGTTCCTACTTATGGAACGGGGTTCGGAGTTCTTAGCTTGTTCAGTCTATTTGTCAAGTTCTATGTTTTCTTTTGTGCATAAATGACGAAGAATTATTTGTATTCGAATAGATGGAAGGGAGTGTGCAGTCAAATATTTCCGTCATACTTGTTTGTTTCTATTGCCTAATTCAGTAACTTGGTATCTGCAGGAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAGGTATATTGAAACTGCTGACATGTCTCGAAATTATCATACACCGCTTCCATAACAATCTTACTGTCATAATTCAATGTAGTTTGCTTTAAGATCTTATACCTGCTAATTTTAAGCTCACAACCTTCTGCTGAGTAGTCAGAAAGTAATTGTTTTCCGTACATGTTGTTGGAAGTTGTACTTCAACTCTTGCATTAGTGGTTTTGTCAGTACCTGTCATTGTTTTACGGATCAAATAAGTAATTTCCATTGTTTGCACGCCCTATAGAACTAGAATTGTCTCTTTTTTTGAAAAAAATGAAGTAATAGATTTTATAGGTGCATCAAGAAAATGCAATGAGTACAGATGATAGTAAGTACAAAGGAGAATTTGCTAGCTCCATTACATGAGGTTCTATGCTAGAGATATGTAGCGTAGAACTAGAATGTCTTGGATTTGGTGATGGTAAGGTTTTCTTGGATTTAGAAGAAAAATGATCCTTTTGGTGTTTAGAAGAAGAATGATGGATCAGTTTATCGGTAAACATATTCATGATCAGGATAGAGCATATGGACCTTTGGACCTTTTTTAGCTTTCTGTTGAAGTGGTAAGCATGAACTCTAGGGTTTTAGTGATTACAAACATAACGTCTACATTTCGAGACCATCTACTTAGCTTTGAATTTTTAGTGGATAGCTCCTTGGTTTCTGCTTGAATTAGCAGTCAGTTTAAACTTCATCTTATTTAATGTAAGAGTTGGCCAGCAGAGCTGCTGAGAGGATTGTTTCATTGAAGACCATATCAAGCACAATCAAAGCACATTTTTGGCAACTGTTTCTTCAGTAATTGATAACATTGTTTTTCTTTTTCTCAATATCTGATCCAGATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGC</genome_strand>
        <mrna_strand>GTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698065" ref_strand="+" ref_description="SGN-E698065 [FA05AF04]">
      <seq>atatgaagggtgcatgtgaaaactgtggagcaatgtcccatgacactaggtcatgtatggaaaggccacgcaaactgggagcaaaatggacagggaaacacattgctcctgatgagaagatagagcagtttgagctggactatgatggtaaaagggatcgttggaatggttatgatgctgcttcttatgcccacgtcattgaacgatatgaagcaagggatgaagcaagaaggaaatacctcaaagagcaacaacttaaaaaattggaagaaaaaaataacaaggatgacaaagaaggaggtgatagtgacaatgaggattgtgaggatgctttgaaggtagacgaagcgaaggttgatgaaagcaagcaaatggattttgccaaagttgagaagcgtgtgcggaccactggtggtggtagcacagggactgttaggaacctgcgtattcgggaggatacggctaaatatcttctcaatcttgatgtaaattcagcacactatgatcccaaaacacggtccatgcgtgaagatcctcttcctgatatggacccgaacgaaaagttctatgctggcgataaccaaaacagagttagtggtcaagcattggagttcaagcagcttaatattcatgcctgggaggcttttgataagggtcatgatgttcatatgcaagcagctccatcccaggcagaattgctctaccaaaattttaagattaacaaggagaaattgaaggtgcaaactaaggatgatgtcatggagaagtatggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="12563" stop="10646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12263" g_stop="12242" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11902" g_stop="11489" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="436" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11488" i_stop="11379" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11378" g_stop="11243" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="572" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11242" i_stop="11151" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11150" g_stop="10946" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="777" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E698065" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12263" e_stop="12242"/>
          <exon e_start="11902" e_stop="11489"/>
          <exon e_start="11378" e_stop="11243"/>
          <exon e_start="11150" e_stop="10946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAAGGGTGCATGTGAAAAGTATGTGTGTTTCCTTGCTTCTTTGGGTGTTTAAGTTTGTGTGTTTCTGTCTGTGGCATATGCTTAATTTCATTTGTCATTCATTGGCACTTAGTAGCTCATCTTGCTTGCTTTGGAGTTCAAAAGAAATCCAACTATGAAGACATTTTACTTTGGAAATTTAAATTTTGAACTTGTATGCTTGCTGCCTTCCTTAAATGTCTTGGTTCATGTGATAAGCCATTTTCTTATAAGTTCCATATGGATTTCATTAGATGCCTTGGTTCAAGTGATTAGCCATTTTCATGAAGGTTATTCAAGGAATCCTGAAAGATGAATGTACATTTGTTTTTTGTGCAGCTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAGGTAAGTTTTTCTTAATATCTTTTCTGGGTCATTATGGTGGTTAGGTTGTTGGAATTTTTCGAATATTGTGGTTGAATGCTATGCTCTATTGATGCATCTTTCATGACCAGGAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCTGTAAGTGCTCCTAATCAAAAATGGGATTTTACTCTCTCTCTATCTTTTGTTATATTTATGTTTATTAACTCATTGGTCGTTTTTCTGTTTAGGGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATG</genome_strand>
        <mrna_strand>ATATGAAGGGTGCATGTGAAAA...................................................................................................................................................................................................................................................................................................................................................CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAG..............................................................................................................GAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCT............................................................................................GGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACCAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317460" ref_strand="+" ref_description="SGN-E317460 [cTOA-28-F12]">
      <seq>tatttccgactcgaattctaattgccggccggagagtattatatttctagggtttcgtcaatccaaatattttttggtttacagaagtaattatggctaccgcatcaggtgcatttaaatctagggaggatcacaggaaacagttggaattggaagaagcaagaaaggctggtcttgctccggctgagttggacgaagatggaaaagagattaatcctcatattcctcagtatatgtcttccgctccttggtaccttaatgcagaaagaccaagtttgaaacatcaaaggaactggaaatcagaccctaattacacaaaatcatggtatgacagaggtgcgaagatatatcaggctgacaagtataggaagggtgcatgtgaaaactgtggagcaatgtcccatgacactaggtcatgtatggaaaggccacgcaaactgggagcaaaatggacagggaaacacattgctcctgatgagaagatagagcagtttgagctggactatgatggtaaaagggatcgttggaatggttatgatgctgcttcttatgcccacgtcattgaacgatatgaagcaagggatgaagcaagaaggaaatacctcaaagagcaacaacttaaaaaattggagaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="13086" stop="11345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12786" g_stop="12679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12600" g_stop="12437" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="272" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12354" g_stop="12242" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="385" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11902" g_stop="11646" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="642" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E317460" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12786" e_stop="12679"/>
          <exon e_start="12600" e_stop="12437"/>
          <exon e_start="12354" e_stop="12242"/>
          <exon e_start="11902" e_stop="11646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCGACTCGAATTCTAATTGCCGGCCGGAGAGTATTATATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAGGTGTGCAGTTATTTTAGACCTAGCTTGTAATTTTGTGTTCGATTCATTCGTTATTTTTATAAATGTTTGGAATTTCAGGTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCAGTATGTATCTCTTCTTTATTTTGGGGCTTTATGGTTTTCATGCTCAAAATTTGACCTTTTTCAATTGTTTCGGTGTTTGCAGAGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAAGTATGTGTGTTTCCTTGCTTCTTTGGGTGTTTAAGTTTGTGTGTTTCTGTCTGTGGCATATGCTTAATTTCATTTGTCATTCATTGGCACTTAGTAGCTCATCTTGCTTGCTTTGGAGTTCAAAAGAAATCCAACTATGAAGACATTTTACTTTGGAAATTTAAATTTTGAACTTGTATGCTTGCTGCCTTCCTTAAATGTCTTGGTTCATGTGATAAGCCATTTTCTTATAAGTTCCATATGGATTTCATTAGATGCCTTGGTTCAAGTGATTAGCCATTTTCATGAAGGTTATTCAAGGAATCCTGAAAGATGAATGTACATTTGTTTTTTGTGCAGCTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATA</genome_strand>
        <mrna_strand>TATTTCCGACTCGAATTCTAATTGCCGGCCGGAGAGTATTATATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAG..............................................................................GTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA..................................................................................AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA...................................................................................................................................................................................................................................................................................................................................................CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAGAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342629" ref_strand="+" ref_description="SGN-E342629 [cTOF-7-B11]">
      <seq>tcgaattctaattgccggccggagagtattactatttctagggtttcgtcaatccaaatattttttggtttacagaagtaattatggctaccgcatcaggtgcatttaaatctagggaggatcacaggaaacagttggaattggaagaagcaagaaaggctggtcttgctccggctgagttggacgaagatggaaaagagattaatcctcatattcctcagtatatgtcttccgctccttggtaccttaatgcagaaagaccaagtttgaaacatcaaaggaactggaaatcagaccctaattacacaaaatcatggtatgacagaggtgcgaagatatatcaggctgacaagtataggaagggtgcatgtgaaaactgtggagcaatgtcccatgacactaggtcatgtatggaaaggccacgcaaactgggagcaaaatggacagggaaacacattgctcctgatgagaagatagagcagtttgagctggactatgatggtaaaaggggatcgttggaatggttatgatgctgcttcttatgcccacgtcattgaacgatatgaagcaagggatgaagcaagaaggaaatacctcanagagccacaacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="13076" stop="11362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12776" g_stop="12679" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12600" g_stop="12437" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="263" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12354" g_stop="12242" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="376" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11902" g_stop="11657" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="623" r_length="247" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E342629" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12776" e_stop="12679"/>
          <exon e_start="12600" e_stop="12437"/>
          <exon e_start="12354" e_stop="12242"/>
          <exon e_start="11902" e_stop="11657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTCTAATTGCCGGCCGGAGAGTATTA-TATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAGGTGTGCAGTTATTTTAGACCTAGCTTGTAATTTTGTGTTCGATTCATTCGTTATTTTTATAAATGTTTGGAATTTCAGGTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCAGTATGTATCTCTTCTTTATTTTGGGGCTTTATGGTTTTCATGCTCAAAATTTGACCTTTTTCAATTGTTTCGGTGTTTGCAGAGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAAGTATGTGTGTTTCCTTGCTTCTTTGGGTGTTTAAGTTTGTGTGTTTCTGTCTGTGGCATATGCTTAATTTCATTTGTCATTCATTGGCACTTAGTAGCTCATCTTGCTTGCTTTGGAGTTCAAAAGAAATCCAACTATGAAGACATTTTACTTTGGAAATTTAAATTTTGAACTTGTATGCTTGCTGCCTTCCTTAAATGTCTTGGTTCATGTGATAAGCCATTTTCTTATAAGTTCCATATGGATTTCATTAGATGCCTTGGTTCAAGTGATTAGCCATTTTCATGAAGGTTATTCAAGGAATCCTGAAAGATGAATGTACATTTGTTTTTTGTGCAGCTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAA-GGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGA</genome_strand>
        <mrna_strand>TCGAATTCTAATTGCCGGCCGGAGAGTATTACTATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAG..............................................................................GTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA..................................................................................AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA...................................................................................................................................................................................................................................................................................................................................................CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCANAGAGCCACAACTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697934" ref_strand="+" ref_description="SGN-E697934 [FA04DA06]">
      <seq>cggtttcttcatctcccacaaaatttcaatggaagccgaagggcaacgaacatcctccaatccctcggcagtgctcgctactctcttgtcaaaaagagctaaacttcacgaagatctacggaacctcgaaaaacaggtttatgacatggagactatttacctacaggatcctagccaatgtggaaatgtactaaaagggtttgaagggtttttatcttcctccaagagtaccagcttcttgaaacggtccaggaagtttcaacctgaagataggctcttttctttatcgtccgtcacctcaccggcagctgaggaacaagctcttggtcgggatggtggaggcatatctgccaatgttcaaggtagacaaaggaagggcaggggaggtccaagagatgcaaagagaatgaggcattcaagtgaaccagactatgactatgaagatgatccagatctaatgtaatttggactctggtgaaacggtaggtttgtcgattttggaatgataaaattgtcgattttgacatgtacaaatatatttggcggcctagaattgtatttctttagtatcggcggacatcagattaaaaagatattgtatcacagtgcatatttttctctgttgctattatatatagtaagtagtatatgtttttgaccncctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="14425" stop="18820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14725" g_stop="14765" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14858" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14859" g_stop="14953" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="136" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14954" i_stop="15028" i_length="75">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15029" g_stop="15129" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="237" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15130" i_stop="16742" i_length="1613">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16743" g_stop="16812" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="307" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16813" i_stop="18027" i_length="1215">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18028" g_stop="18080" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="360" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18081" i_stop="18218" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18219" g_stop="18520" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="662" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="687"/>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E697934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14725" e_stop="14765"/>
          <exon e_start="14859" e_stop="14953"/>
          <exon e_start="15029" e_stop="15129"/>
          <exon e_start="16743" e_stop="16812"/>
          <exon e_start="18028" e_stop="18080"/>
          <exon e_start="18219" e_stop="18520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAGGTAAACCCTCGGTTCAACCCTATTTGTCTTCTTTCTTCCTAATTTTTGCTTAACAAATATGTTCAACTATGTCTGTCACGTAATCCATTTTAGGGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAGGTCAACAAATTTCTGGGGTTTGTGTTTTATGTTTGGTTTCAACATTGATTCCCTGAAATTCTAACTGACTTGCAGGTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTTGTAAGTTTTAAATGAGACCTAGGGTGGCTGTGATATTGCAATGAGTTGCGTCTGAATAGAGCAGAATGATGAATGCATGCATAGAATTTATTTACCTGACCCTAACTAGTGCCGAATTAAGCTTAGTTGTTTCATTTGACCTTGTTTTTTAGGATAAAGCAATGCATATAATTGTATATTGTTGATGACTTGGTTTTGAGAAATGGATGTAGGTCTTGATGTACTCTAGTGCTTCTTGAGTGGATTGCTTTCCTAGTGTGGTATGTTTGGAGGTAAGGATTTCAAAGAGAAATGGCGAGAGTGGAGACTAACAATCATGCTGATTTAGCATTTATGATGATACAAGCCTATTCTCTCTCCACTTTCTGTTCCTTCTTAAGAAGTAAGAAAACCCTCTGCTGTCAAGAGAATAATGTAGTCCCATAATTTGCTGAAGTTGATGTAAGTAATTATATCGCAATTTATTATGATGATACTATGGACAAGTAAATTTGTGTTCACAAATTACAAGTGGTTAAGTTACTTGCACATTCATGGAAGGTGTATAATAGGAAAGACTAAAAGCATACGGTTGGTACGGGACAAGATTTTGATAGCCAATGTTCTGTGATGGATGTGGGCAAGAAGGTAGAATACATCCAAATTACTTTTGGCATTTTGCTTTTGCTTAGTAAAATGTAATTGTGTATATTTACGCAAAGGCAGTAAAAGTTCATCAATGATGTAAATGAGCTAGCTTTGTGTCATTGTCTCACCTTGTGAGACTCATTTTTTAAAGGCTTAGTTCTGCTGCCCCTCTCTGTCTTATCTCCTTTGTTTTTCGAAGAAGACGCATGGAAGAGTATTAATCACGTTGTAAGTGTGTGAATAACAACAGTTGCAATTCATTTTCATCACGGAGCTAAATTCTACAAGATGAGAGTACCGAAGAACTTTTTAGACTTTCGTATAAACCCAATGTTGTTGACATTTTAGTTGGGCTGATTGTGCTGAATAGATCCACGTGATTAAGCGTTTCAGTTGTTCGTAAAATTATAATTCCTGTATCCAAGGGGATGGACTAGTAGTGAAGGGAGGTCCCAGGTTCGAATTGCAGTTATAACACTTAGTGTGAGCCCATCCTCCTGTTTGGTTGGCCGGAATGCTTTGCAATACGTTGTGGGTTGGACAGTTTGTCCAGTGGATTAGCTGAAATGCATTCAAGTTGAAATTGACACCACTAATATAAGGATCCTTCCCTGCATCCTATTTTTTGTTATTTACTTTGACTCACATAACTATTACGAGAAGAGTTGGAGAAGCGAGTTGGTTAGTGGTTGTCGGGGACTTGGAGGAACATGTAGACCACATATTTACTTCAGTGTTTTGGGAATATCATATAGTAAAAGTAATAAACATCTATTTGATGTTAGAAATGTTATTGAAACTGCTGTTCCTAAGAAATAGAAGAGTATCATCATTAGTTTATTCCATTAATGGTCTGGTAATATAATGATGATTTTAAAAATCTACTCAATCACTCTCTTTAGGTTTCAATTTTCCGGCCTAAACTTAAGGTTCGCCTATATGTTTATTTATTGAAATTAGCCTTTTTCTTTTTAATTATTTTGCAGCTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCAGTATGTATTTTTCTGTATTTCTCAGCAAGGGGAAACACTTGAATGCTGTTGATGGATGTATATCTTATGATCTTATACACTGGGAATCATATCAGAGTTTCTGTTCATGGCATGCAAATTTAGTTTGTCTCTTAAGTTTATGTCTGTTATTTTGCAAGATCATATGCTCTGTTCCCTGTTGTACAATGGTGCCCTTTGTTTCTTGTTAAGATTTATACTGAACATAGTACAATAGCTAATACATTATAATCCATTTACTGTCCTGTCTCCATCTTTTAAATGTCTAGAGATTGTGAGGCAAGTTAGGGCGCCCAATATGAATGTCAAGAAGATTTATTAAAGCTGACTAAAGCTAAAAATTCTTGATAAGGGGGCAACACTAGCAAGGTGTTCAGTTGGTCAGCACTCGTCTTTGACCACCTTCTTGGTTTATAGTCCTGTTTCAAGATAGAGATCTTAGCCCATTCTGTTGAATTATAATGCGAAATTCTCCCTTTAGAACCCTGTAAAAGGATAGGAAAAAAAGAGAGAGCATCAAATAAATGGAAAAAGGAAGGAATGTAGTAGAGAAGGATTCAATTTCCAAATGAATCACCAGAGAAGTAGATTAAGGGGAACAAGTTCCATTTGAGTGGGTAAGCAGTGGTTAAGGTGTAAAGGCAGTTTGAGCTTGTTTTTGGTTGTAAAAGACTGGGTTAAACATAAGTAGAGTGGAAAAGAAACAGATAGGGCTCTGCCAATTACCAAGCATTGAACTAGAAGCTCCCATCTGTATTAGAACCCCACCTTTTGAGTGTTCTCAAAGCTTTGCCAATAAATGGAGCACTAAACAAAATGATATTTACGTTAATTTTGCTTGGAAATAGCTCAGGTTGCATTCGGAAGATGTTGTGACGTAGTTGCTGGTTCTCATGTATATTATTGCCTTCCATCTATCCTTTAAATTACAATGTGCTGAAACCTCGCGTAGAAACTTAAATTGCACTTTCTGGAATCTCTCCTTGTAAACCCCTTGATAGTCTCCATCCAAAAAAGACCATAGGTAAAAAAGATAATTAAGCAACTCCTGCCATGGTCTATCATGTTCCCATCTACTTCAGAGTTGAACGATGGTCGTGGAATGACACCTTAATGCATATTTCATCCAACATGAAGTTGTAGTGCTACTTACATAATTCAAAGAACATGAAAGTAGCATTTTTTGCATATTTTCAGGCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCAGTAAGTTGTGAATATTATCCTATAACTACTTTTGTTGGAGGAGTAAAATAGATAGTTCCACAACTTTTTCTCTTATCGGCAATTGATTTTTCAAGTTCTAATACAATAGACTACCCTGTTTGTTGGCTGTTTCTCCAGAGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCAC</genome_strand>
        <mrna_strand>CGGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAG.............................................................................................GGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAG...........................................................................GTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCA..........................................................................................................................................AGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340978" ref_strand="+" ref_description="SGN-E340978 [cTOF-5-F17]">
      <seq>tcatattcctctttttttcttcctctcaaggctcattttaatttttattttgctcttctcatgtctttcaaattcagagggccaaatgcttcttctggaatgggtgtggctgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagatacgtgattttcaaaatcgatgaaaagaaaaaggaggttgttgttgagaaaactggcagccctgctgaaacctttgatgactttactgcttctttgccagaaaatgattgccgatatgcggtgtatgactttgattttgtgacttctgagaattgccaaaagagcaagatattctttgttcattggtctcctgcaacatctcgtattcgtgcaaagatgctttacgccacctctaaagacgcatttaaaagagagctcgatggttttcattatgagattcaggctactgatccaacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcaataaacactatgtttccagctaagcatttagcttgttagtgtatatggtgttggtatttgttttgcttttttctcagatgtttgaacacttgggaacctgcataataatataatatcagtggttgccaattttctaattgtggactatacaagtgtagaattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19206" stop="21881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19506" g_stop="19586" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="347" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21581" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="675" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E340978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19506" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATG</genome_strand>
        <mrna_strand>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334852" ref_strand="+" ref_description="SGN-E334852 [cTOE-3-M16]">
      <seq>tcctctttttttcttcctctcaaggctcattttaatttttactttgctcttctcacgtctttcaaactcagagggccaaatgcttcttctggaatgggtgtggctgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagacaccgtgattttcaaaatcgatgaaaagaaaaaggaggttgttgttgagaaaacctggcagccctgctgaaacctttgatgacctttacctgcttctttgccagaaaatgattgccgatatgcggtgtatgactttgattttgtgacttctgagaattgccaaaagagcaagatattctttgttcattggtctcctgcaacatctcgtattcgtgccaagatgctttacgccacctctaaagacgcatttaaaagagagctcgatggttttcattatgagattcaggctactgatccacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcaataacactatgtttccagctaagcatttagcttgttagtgttatggtgttggtatttgttttgcttttttctcagatgtttgaacacttgggaacctgcataataatataatatccagtggttgccaattttctaattgtggactataccagtgtagaattcatggatttgtcctctcttatcctatttcagctaaggattatgaatataaatatgtcctttcgttagaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19212" stop="21950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19512" g_stop="19586" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="0.94"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="345" r_length="270" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21650" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="742" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E334852" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19512" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATA-CGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAA-CTGGCAGCCCTGCTGAAACCTTTGATGA-CTTTA-CTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATAT-CAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCAT-GATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGT-CTTTCGTTAGAATCAACA</genome_strand>
        <mrna_strand>TCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTACTTTGCTCTTCTCACGTCTTTCAAACTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGACACCGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACCTGGCAGCCCTGCTGAAACCTTTGATGACCTTTACCTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCGTGCCAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCC-ACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAAT-AACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGT-TATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCCAGTGGTTGCCAATTTTCTAATTGTGGACTATACCAGTGTAGAATTCATGGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCCTTTCGTTAGAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548270" ref_strand="+" ref_description="SGN-E548270 [TUS-59-K11]">
      <seq>ttttgctcttctcatgtctttcaaattcagagggccaaatgcttcttctggaatgggtgtggctgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagatacgtgattttcaaaatcgatgaaaagaaaaaggaggttgttgttgagaaaactggcagccctgctgatacctttgatgactttactgcttctttgccagacaatgattgccgatatgcggtgtatgactctgattttgtgacttctgacaattgccaatagagcaagatattctttgttcattggtctcctgcaacatctcgtattcctgcacagatgctttacgccacctctaaagacgcatttagaagagagctcgatggctttcattatgagattcacgctactgatccaacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcatagacactatgtttccagctaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19253" stop="21741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19553" g_stop="19586" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="300" r_length="266" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21441" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="487" r_length="187" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E548270" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19553" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCA</genome_strand>
        <mrna_strand>TTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGATACCTTTGATGACTTTACTGCTTCTTTGCCAGACAATGATTGCCGATATGCGGTGTATGACTCTGATTTTGTGACTTCTGACAATTGCCAATAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCCTGCACAGATGCTTTACGCCACCTCTAAAGACGCATTTAGAAGAGAGCTCGATGGCTTTCATTATGAGATTCACGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGC-ATAGACACTATGTTTCCAGCTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285331" ref_strand="+" ref_description="SGN-E285331 [cLER-20-I18]">
      <seq>tttgctcttctcatgtctttcaaattcagagggccaaatgcttcttctggaatgggtgtggctgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagatacgtgattttcaaaatctatgaaaagaaaaaggaggttgttgttgagaaaactggcagccctgctgaaacctttgatgactttactgcttctttgccagaaaatgattgccgatatgcggtgtatgactttgattttgtgacttctgagaattgccaaaagagcaagatattctttgttcattggtctcctgcaacatctcgtattcgtgcagagatgctttacgccacctctaaagacgcatttaaaagagagctcgatggttttcattatgagattcaggctactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19254" stop="21661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19586" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="299" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21361" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E285331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCC</genome_strand>
        <mrna_strand>TTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCTATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCGTGCAGAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289169" ref_strand="+" ref_description="SGN-E289169 [cLES-18-B16]">
      <seq>tcttcttatgtctttcaaattcagagggccaaatgcttcttctggaatgggtgtgggtgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagatacgtgattttcaaaatcgatgaaaagaaaaaggaggttgttgttgagaaaactggcagccctgctgaaacctttgatgactttactgcttctttgccagaaaatgattgccgatatgcagcgtatgactttgattgtgcgacttctgagaattgccaaaagagcaagatattctttgttcattggtctcctgcaacatctcgtattcgtgcaaagatgctttacgccacctctaaagacccatttgaaagagagctcgatgggtttcattatgagattcaggctactgatccaacagaagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19259" stop="21675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19559" g_stop="19586" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="294" r_length="266" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21375" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="416" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E289169" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19559" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATC</genome_strand>
        <mrna_strand>TCTTCTTATGTCTTTCAAATTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGGTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCAGCGTATGACTTTGATTGTGCGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACCCATTTGAAAGAGAGCTCGATGGGTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206244" ref_strand="+" ref_description="SGN-E206244 [cLEC-29-J4]">
      <seq>agaaacgaagttcccaagtgttcaaacatctgagaaaaaagcaaaacaaataccaacaccatatacactaacaagctaaatgcttagctggaaacatagtgtttattgcaagatggctcagtgagcacggtctttcagcacttcaagatcaacttctgttggatcagtagcctgaatctcataatgaaaaccatcgagctctcttttaaatgcgtctttagaggtggcgtaaagcatctttgcacgaatacgagatgttgcaggagacctaaggaaacaaaagtaatgcactgagaatgtgagaaggaaaaagtttgaagtgttacttatagttctctgagatgctggacttgcacatcaatcccattatacgtgccatgaaattgatttttcaactaaaatgatatgtcgaaatcaagcaaacgcatacagaggcaaaggcaaaacagtagaagcattctcaaaattttgctttctaaagactagcattgggagtttgctacagagacctgagaataaatgcataatctattttcgtaaaatgagagtaagatgtgattaaaaaatacaaccaaattgatttctttttgcatttggaagagacaaacattttgacattgaaaagaaatctctctgacaaatgatatactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21818" stop="20569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21512" g_stop="20869" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="653" r_length="644" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E206244" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21512" e_stop="20869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</genome_strand>
        <mrna_strand>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTTCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550735" ref_strand="+" ref_description="SGN-E550735 [TUS-50-G12]">
      <seq>aagaaacaaagttcccaagtgttcaaacatctggagaaaaaagcaaaacaaataccaacaccatatacactaacaagctaaatgcttagctggaaacatagtgtttattgcaagatggctcagtgagcacggtctttcagcacttcaagatcaacttctgttggatcagtagcctgaatctcataatgaaaaccatcgagctctcttttaaatgcgtctttagaggtggcgtaaagcatctttgcacgaatacgagatgttgcaggagacctaaggaaacaaaagtaatgcactgagaatgtgagaaggaaaaagtttgaagtgttacttatagttctctgagatgctggacttgcacatcaatcccattatacgtgccatgaaattgatttttcaactaaaatgatatgtcgaaatcaagcaaacgcatacagaggcaaaggcaaaacagtagaagcattctcaaaattttgcttcctaaagactagcattgggagtttgctacagagacctgagaataaatgcataatctattttcgtaaaatgagagtaagatgtgattaanaatacaaccaaattgatttctttttgcatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21814" stop="20624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21512" g_stop="20924" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="599" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E550735" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21512" e_stop="20924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAAGTGTTCAAACATCT-GAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGA</genome_strand>
        <mrna_strand>GTTCCCAAGTGTTCAAACATCTGGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATT-AANAATACAACCAAATTGATTTCTTTTTGCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688419" ref_strand="+" ref_description="SGN-E688419 [t3_tus_50_g12]">
      <seq>aagaaacaaagttcccaagtgttcaaacatctggagaaaaaagcaaaacaaataccaacaccatatacactaacaagctaaatgcttagctggaaacatagtgtttattgcaagatggctcagtgagcacggtctttcagcacttcaagatcaacttctgttggatcagtagcctgaatctcataatgaaaaccatcgagctctcttttaaatgcgtctttagaggtggcgtaaagcatctttgcacgaatacgagatgttgcaggagacctaaggaaacaaaagtaatgcactgagaatgtgagaaggaaaaagtttgaagtgttacttatagttctctgagatgctggacttgcacatcaatcccattatacgtgccatgaaattgatttttcaactaaaatgatatgtcgaaatcaagcaaacgcatacagaggcaaaggcaaaacagtagaagcattctcaaaattttgcttcctaaagactagcattgggagtttgctacagagacctgagaataaatgcataatctattttcgtaaaatgagagtaagatgtgattaanaatacaaccaaattgatttctttttgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21814" stop="20627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21512" g_stop="20927" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="596" r_length="586" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E688419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21512" e_stop="20927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAAGTGTTCAAACATCT-GAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTT</genome_strand>
        <mrna_strand>GTTCCCAAGTGTTCAAACATCTGGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATT-AANAATACAACCAAATTGATTTCTTTTTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317516" ref_strand="+" ref_description="SGN-E317516 [cTOB-17-M19]">
      <seq>tggttttcattatgagattgaggctactgatccaacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcaataaacactatgtttccagctaagcatttagcttgttagtgtatatggtgttggtatttgttttgcttttttctcagatgtttgaacacttgggaacctgcataataatataatatcagtggttgccaattttctaattgtggactatacaagtgtagaattcatgatttgtcctctcttatcctatttcagctaaggattatgaatataaatatgtctttcgttagaatcangnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21029" stop="21947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21649" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="334"/>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E317516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCAAC</genome_strand>
        <mrna_strand>TGGTTTTCATTATGAGATTGAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCANG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317515" ref_strand="+" ref_description="SGN-E317515 [cTOB-17-M15]">
      <seq>tggttttcattatgagattgaggctactgatccaacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcaataaacactatgtttccagctaagcatttagcttgttagtgtatatggtgttggtatttgttttgcttttttctcagatgtttgaacacttgggaacctgcataataatataatatcagtggttgccaattttctaattgtggactatacaagtgtagaattcatgatttgtcctctcttatcctatttcagctaaggattatgaatataaatatgtctttcgttagaatcaaaagaaattagcaaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21029" stop="21950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21649" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-E317515" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCAAC</genome_strand>
        <mrna_strand>TGGTTTTCATTATGAGATTGAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="26476" stop="25357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26179" g_stop="25665" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26179" e_stop="25665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACAGACAGTCGTGGTCGCGACGGACCTTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTC-TCTTCATTCCCCTCGATGGCAAGTATGACGGACCGTCATAGGCACAACGGTTCGTCGAGGGTCTCCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGCCACGACGGACCATCACAAGTTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTTGTCTCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAATAGTATTAATAATACTGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGAG-GTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-HuCkg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="26338" stop="25357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26038" g_stop="25665" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26038" e_stop="25665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGCCACGACGGACCATCACAAGTTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTTGTCTCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAATAGTATTAATAATACTGTGAAACCACG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>169</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1713" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1713" e_stop="1032"/>
            <exon e_start="750" e_stop="289"/>
            <exon e_start="188" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1713" e_stop="1032" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1031" i_stop="751" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="750" e_stop="289" e_length="462"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="188" e_stop="1" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1713" stop="1032"/>
              <exon start="750" stop="620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1713" stop="1032"/>
              <exon start="750" stop="635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1713" stop="1032"/>
              <exon start="750" stop="656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1713" stop="1032"/>
              <exon start="750" stop="689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1700" stop="1032"/>
              <exon start="750" stop="557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1700" stop="1032"/>
              <exon start="750" stop="595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1700" stop="1032"/>
              <exon start="750" stop="683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1699" stop="1032"/>
              <exon start="750" stop="593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1699" stop="1032"/>
              <exon start="750" stop="594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1699" stop="1032"/>
              <exon start="750" stop="635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1699" stop="1032"/>
              <exon start="750" stop="635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1699" stop="1032"/>
              <exon start="750" stop="678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1697" stop="1099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1692" stop="1313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="1032"/>
              <exon start="750" stop="737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698708" strand="+"/>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1586" stop="1032"/>
              <exon start="750" stop="498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1545" stop="1032"/>
              <exon start="750" stop="338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1544" stop="1032"/>
              <exon start="750" stop="386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1536" stop="1032"/>
              <exon start="750" stop="424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1506" stop="1032"/>
              <exon start="750" stop="370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1482" stop="1032"/>
              <exon start="750" stop="340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1482" stop="1032"/>
              <exon start="750" stop="365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1467" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1467" stop="1032"/>
              <exon start="750" stop="384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1460" stop="1032"/>
              <exon start="750" stop="293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1419" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1406" stop="1032"/>
              <exon start="750" stop="593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1398" stop="1032"/>
              <exon start="750" stop="293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1389" stop="1032"/>
              <exon start="750" stop="498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1388" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1378" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1373" stop="1032"/>
              <exon start="750" stop="362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1370" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1363" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="77"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1360" stop="1032"/>
              <exon start="750" stop="452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1321" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1320" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1319" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1310" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1306" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="87"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1294" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="6"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1246" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1233" stop="1032"/>
              <exon start="750" stop="620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1233" stop="1032"/>
              <exon start="750" stop="673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1208" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="27"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1190" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1137" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1136" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1136" stop="1032"/>
              <exon start="750" stop="314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1107" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1101" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1071" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="83"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1058" stop="1032"/>
              <exon start="750" stop="289"/>
              <exon start="188" stop="81"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="712" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG : GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG : AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</gDNA_template>
            <first_frame> F  L  Q  I  S  S  H  L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  G  R  A  S  S  R  L  H  *  R  S  Q  P  S  V  Q  P  A  *  S  E  L  Q   : G  I  L  L  G  R  W  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H  D  *  G  *  *  R  R  R  G  I  R  R  A  I  T  T  R  T  A  M  V  G  R  S  N  W  K  W  L  G  R  K  H  L  H  N  E  N  P  H  Q  H  G  Y  S  K  T  S  *  Y  L  L  K  A  S  W  Q  N  *  A  C  *  *  P  K  F  S  H  P  *  R  H  G  H  E  C  L  *  R  N  P  I  S   : E  R  T  D  E  P  S  L  V  S  E  W  T  Q  R  D  L  R  A  K  R  R  C  T  S  A  G  S  R  P  H  R  A  T  S  D  E  *  Q  G  K  S  R  R  N  V  C  S  P  S  V  L  C  L  N  S  E  S  R  A  K  W  I </first_frame>
            <second_frame>  F  S  K  S  H  L  I  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E  E  E  L  V  A  V  S  I  N  D  L  N  H  R  S  N  Q  L  D  Q  N  F  R  :  A  F  Y  L  A  G  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  I  R  A  D  E  E  E  E  E  F  E  G  R  S  Q  R  G  Q  R  W  W  A  E  V  T  G  N  G  L  E  E  N  I  C  T  M  K  I  R  T  N  M  D  T  Q  R  R  A  D  I  Y  S  R  Q  A  G  K  I  K  H  V  N  S  Q  N  F  P  I  L  R  D  M  D  M  S  A  S  K  G  T  L  Y  P  :  N  A  L  M  S  P  H  W  S  V  N  G  H  S  V  I  Y  V  Q  R  G  D  A  Q  V  Q  V  V  D  H  T  G  Q  Q  V  M  N  D  R  V  N  Q  G  E  M  F  V  V  P  Q  Y  Y  A  S  T  V  K  A  G  Q  N  G   </second_frame>
            <third_frame>   S  P  N  L  I  S  S  L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V  R  K  S  *  *  P  S  P  L  T  I  S  T  I  G  P  T  S  L  I  R  T  S  G :   H  S  T  W  P  V  E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  *  L  G  L  M  K  K  K  R  N  S  K  G  D  H  N  E  D  S  D  G  G  Q  K  *  L  E  M  A  W  K  K  T  F  A  Q  *  K  S  A  P  T  W  I  L  K  D  E  L  I  S  T  Q  G  K  L  A  K  L  S  M  L  I  A  K  I  F  P  S  L  E  T  W  T  *  V  P  L  K  E  P  Y  I  R :   T  H  *  *  A  L  T  G  Q  *  M  D  T  A  *  S  T  C  K  E  E  M  H  K  C  R  *  *  T  T  P  G  N  K  *  *  M  T  G  *  I  K  E  K  C  L  *  S  L  S  T  M  P  Q  Q  *  K  Q  G  K  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1712" stop="1032"/>
                    <exon start="750" stop="289"/>
                    <exon start="188" stop="3"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKSHLIFVFFILYNQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEELVAVSINDLNHRSNQLDQNFRAFYLAGGVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMSMIRADEEEEEFEGRSQRGQRWWAEVTGNGLEENICTMKIRTNMDTQRRADIYSRQAGKIKHVNSQNFPILRDMDMSASKGTLYPNALMSPHWSVNGHSVIYVQRGDAQVQVVDHTGQQVMNDRVNQGEMFVVPQYYASTVKAGQNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1692" e_stop="1102"/>
            <exon e_start="732" e_stop="289"/>
            <exon e_start="188" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1692" e_stop="1102" e_length="591"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1101" i_stop="733" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="732" e_stop="289" e_length="444"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="288" i_stop="189" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="188" e_stop="1" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1692" stop="1313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1678" stop="1109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1676" stop="1237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1673" stop="1193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1671" stop="1114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1102"/>
              <exon start="732" stop="537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1666" stop="1199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1658" stop="1203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1647" stop="1167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1642" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1636" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1610" stop="1290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1608" stop="1224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1606" stop="1216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1592" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="712" stop="289"/>
              <exon start="188" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA : GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG : AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATT</gDNA_template>
            <first_frame> L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  :  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  I  R  A  D  E  E  E  E  E  F  E  G  R  S  Q  R  G  Q  R  W  W  A  E  V  T  G  N  G  L  E  E  N  I  C  T  M  K  I  R  T  N  M  D  T  Q  R  R  A  D  I  Y  S  R  Q  A  G  K  I  K  H  V  N  S  Q  N  F  P  I  L  R  D  M  D  M  S  A  S  K  G  T  L  Y  P  :  N  A  L  M  S  P  H  W  S  V  N  G  H  S  V  I  Y  V  Q  R  G  D  A  Q  V  Q  V  V  D  H  T  G  Q  Q  V  M  N  D  R  V  N  Q  G  E  M  F  V  V  P  Q  Y  Y  A  S  T  V  K  A  G  Q  N  G   </first_frame>
            <second_frame>  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E :   E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  *  L  G  L  M  K  K  K  R  N  S  K  G  D  H  N  E  D  S  D  G  G  Q  K  *  L  E  M  A  W  K  K  T  F  A  Q  *  K  S  A  P  T  W  I  L  K  D  E  L  I  S  T  Q  G  K  L  A  K  L  S  M  L  I  A  K  I  F  P  S  L  E  T  W  T  *  V  P  L  K  E  P  Y  I  R :   T  H  *  *  A  L  T  G  Q  *  M  D  T  A  *  S  T  C  K  E  E  M  H  K  C  R  *  *  T  T  P  G  N  K  *  *  M  T  G  *  I  K  E  K  C  L  *  S  L  S  T  M  P  Q  Q  *  K  Q  G  K  M  D  </second_frame>
            <third_frame>   L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V   : R  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H  D  *  G  *  *  R  R  R  G  I  R  R  A  I  T  T  R  T  A  M  V  G  R  S  N  W  K  W  L  G  R  K  H  L  H  N  E  N  P  H  Q  H  G  Y  S  K  T  S  *  Y  L  L  K  A  S  W  Q  N  *  A  C  *  *  P  K  F  S  H  P  *  R  H  G  H  E  C  L  *  R  N  P  I  S   : E  R  T  D  E  P  S  L  V  S  E  W  T  Q  R  D  L  R  A  K  R  R  C  T  S  A  G  S  R  P  H  R  A  T  S  D  E  *  Q  G  K  S  R  R  N  V  C  S  P  S  V  L  C  L  N  S  E  S  R  A  K  W  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="732" stop="289"/>
                    <exon start="188" stop="3"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMSMIRADEEEEEFEGRSQRGQRWWAEVTGNGLEENICTMKIRTNMDTQRRADIYSRQAGKIKHVNSQNFPILRDMDMSASKGTLYPNALMSPHWSVNGHSVIYVQRGDAQVQVVDHTGQQVMNDRVNQGEMFVVPQYYASTVKAGQNG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1691" stop="1102"/>
                    <exon start="732" stop="696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFFILYNQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEYKKLVEGKLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4859" PGL_stop="5684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4859" e_stop="5684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4859" e_stop="5684" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4859" stop="5684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</gDNA_template>
            <first_frame> L  F  L  R  N  R  K  Q  N  G  H  K  S  A  E  K  K  R  I  L  *  T  T  *  F  L  S  S  F  C  T  K  L  *  R  K  I  *  A  S  E  F  I  L  L  H  Q  *  L  *  L  L  V  Y  Y  Y  *  Y  Y  L  Y  I  L  Y  L  S  L  L  L  Y  F  S  P  Y  S  *  L  N  L  H  C  F  K  F  N  H  H  V  L  L  K  L  A  *  S  T  P  S  N  S  K  N  V  E  V  F  F  H  Q  I  T  N  Q  F  P  Q  S  T  Q  *  I  Q  S  H  *  E  S  Q  E  S  K  S  F  M  H  Q  E  T  S  P  V  S  C  L  S  S  S  I  Q  N  *  T  F  K  Q  *  V  Q  I  Q  V  E  I  Q  T  Y  S  E  I  S  Q  E  I  S  T  S  I  Y  R  S  T  F  H  *  E  Y  I  *  F  C  G  E  E  Q  L  W  P  N  *  Y  D  Y  D  K  E  E  G  A  *  T  S  L  H  N  G  N  R  T  R  *  D  N  P  *  R  G  K  *  *  *  *  *  *  C  N  E  *  *  D  V  G  I  V  D  I  G  I  S  T  I  A  L  Y  *  *  K  S  R  R  V  H  S  *  I  S  C  R  H  A  A  S  R  E  Y  V  </first_frame>
            <second_frame>  C  F  *  E  I  E  N  K  M  D  I  S  L  L  K  R  N  A  F  F  K  L  P  N  F  C  P  L  F  A  L  N  Y  S  V  K  F  K  P  V  N  L  Y  Y  Y  T  N  D  Y  N  Y  *  S  T  T  T  S  T  I  Y  I  S  Y  I  S  A  F  C  Y  I  S  P  L  I  H  N  *  I  C  I  V  S  N  S  I  T  M  Y  C  L  N  L  R  R  V  L  L  P  T  Q  K  M  W  K  F  F  S  T  K  L  Q  I  N  F  H  K  V  L  N  R  S  K  V  I  K  K  A  K  N  P  N  P  L  C  I  K  K  L  A  P  S  L  V  F  R  V  Q  F  K  T  K  R  S  N  N  K  F  K  Y  K  S  K  F  R  P  T  L  K  F  H  K  K  S  A  P  V  Y  I  D  Q  L  F  I  E  N  I  S  D  S  V  V  K  N  N  F  G  Q  T  S  M  I  T  T  K  K  K  E  H  K  Q  V  C  I  T  E  T  E  Q  G  E  I  I  H  E  G  E  S  S  S  S  S  S  S  V  T  N  D  E  M  W  E  S  L  T  L  A  S  P  Q  L  H  C  I  N  E  R  A  E  E  F  I  A  K  F  R  A  D  M  L  R  Q  E  N  M  L </second_frame>
            <third_frame>   V  F  K  K  *  K  T  K  W  T  *  V  C  *  K  E  T  H  S  L  N  Y  L  I  F  V  L  F  L  H  *  T  I  A  *  N  L  S  Q  *  I  Y  I  I  T  P  M  T  I  T  T  S  L  L  L  L  V  L  F  I  Y  L  I  S  Q  P  F  V  I  F  L  P  L  F  I  T  E  F  A  L  F  Q  I  Q  S  P  C  I  A  *  T  C  V  E  Y  S  F  Q  L  K  K  C  G  S  F  F  P  P  N  Y  K  S  I  S  T  K  Y  S  I  D  P  K  S  L  R  K  P  R  I  Q  I  L  Y  A  S  R  N  *  P  R  L  L  S  F  E  F  N  S  K  L  N  V  Q  T  I  S  S  N  T  S  R  N  S  D  L  L  *  N  F  T  R  N  Q  H  Q  Y  I  *  I  N  F  S  L  R  I  Y  L  I  L  W  *  R  T  T  L  A  K  L  V  *  L  R  Q  R  R  R  S  I  N  K  F  A  *  R  K  P  N  K  V  R  *  S  M  K  G  K  V  V  V  V  V  V  V  *  R  M  M  R  C  G  N  R  *  H  W  H  L  H  N  C  I  V  L  M  K  E  Q  K  S  S  *  L  N  F  V  Q  T  C  C  V  K  R  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5091" stop="5684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIVSNSITMYCLNLRRVLLPTQKMWKFFSTKLQINFHKVLNRSKVIKKAKNPNPLCIKKLAPSLVFRVQFKTKRSNNKFKYKSKFRPTLKFHKKSAPVYIDQLFIENISDSVVKNNFGQTSMITTKKKEHKQVCITETEQGEIIHEGESSSSSSSVTNDEMWESLTLASPQLHCINERAEEFIAKFRADMLRQENML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12786" PGL_stop="6411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12786" e_stop="12679"/>
            <exon e_start="12600" e_stop="12437"/>
            <exon e_start="12354" e_stop="12242"/>
            <exon e_start="11902" e_stop="11489"/>
            <exon e_start="11378" e_stop="11243"/>
            <exon e_start="11150" e_stop="10851"/>
            <exon e_start="8631" e_stop="8415"/>
            <exon e_start="7551" e_stop="7448"/>
            <exon e_start="7089" e_stop="7021"/>
            <exon e_start="6938" e_stop="6411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12786" e_stop="12679" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12600" e_stop="12437" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12354" e_stop="12242" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11902" e_stop="11489" e_length="414"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11488" i_stop="11379" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11378" e_stop="11243" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11242" i_stop="11151" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11150" e_stop="10851" e_length="300"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8631" e_stop="8415" e_length="217"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7551" e_stop="7448" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7089" e_stop="7021" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="0.956">
            <gDNA_exon_boundary e_start="6938" e_stop="6411" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12786" stop="12679"/>
              <exon start="12600" stop="12437"/>
              <exon start="12354" stop="12242"/>
              <exon start="11902" stop="11646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12776" stop="12679"/>
              <exon start="12600" stop="12437"/>
              <exon start="12354" stop="12242"/>
              <exon start="11902" stop="11657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12715" stop="12679"/>
              <exon start="12600" stop="12437"/>
              <exon start="12354" stop="12242"/>
              <exon start="11902" stop="11489"/>
              <exon start="11378" stop="11243"/>
              <exon start="11150" stop="10851"/>
              <exon start="8631" stop="8415"/>
              <exon start="7551" stop="7448"/>
              <exon start="7089" stop="7021"/>
              <exon start="6938" stop="6411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12242"/>
              <exon start="11902" stop="11489"/>
              <exon start="11378" stop="11243"/>
              <exon start="11150" stop="10946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11147" stop="10851"/>
              <exon start="8631" stop="8415"/>
              <exon start="7551" stop="7448"/>
              <exon start="7089" stop="7021"/>
              <exon start="6938" stop="6879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11068" stop="10851"/>
              <exon start="8631" stop="8415"/>
              <exon start="7551" stop="7458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8489" stop="8415"/>
              <exon start="7551" stop="7448"/>
              <exon start="7089" stop="7021"/>
              <exon start="6938" stop="6517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249155" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTCCGACTCGAATTCTAATTGCCGGCCGGAGAGTATTATATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAG : GTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA : AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA : CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAG : GAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCT : GGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG : GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG : ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG : GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAG : GTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTACTGTTTGCCTTCTTTCAGCGTTTGTGTGTCTTCAGCTTTGTGAATGTGACAGATTACTAATGCATTGGCTCATTGAATAAAAAATTCTGTTGTTCCATTCAACGATCAAAATTGA</gDNA_template>
            <first_frame> Y  F  R  L  E  F  *  L  P  A  G  E  Y  Y  I  S  R  V  S  S  I  Q  I  F  F  G  L  Q  K  *  L  W  L  P  H  Q  :  V  H  L  N  L  G  R  I  T  G  N  S  W  N  W  K  K  Q  E  R  L  V  L  L  R  L  S  W  T  K  M  E  K  R  L  I  L  I  F  L  S  I  C  L  P  L  L  G  T  L  M  Q  K  D  Q :   V  *  N  I  K  G  T  G  N  Q  T  L  I  T  Q  N  H  G  M  T  E  V  R  R  Y  I  R  L  T  S  I  G  R  V  H  V  K   : T  V  E  Q  C  P  M  T  L  G  H  V  W  K  G  H  A  N  W  E  Q  N  G  Q  G  N  T  L  L  L  M  R  R  *  S  S  L  S  W  T  M  M  V  K  G  I  V  G  M  V  M  M  L  L  L  M  P  T  S  L  N  D  M  K  Q  G  M  K  Q  E  G  N  T  S  K  S  N  N  L  K  N  W  K  K  K  I  T  R  M  T  K  K  E  V  I  V  T  M  R  I  V  R  M  L  *  R  *  T  K  R  R  L  M  K  A  S  K  W  I  L  P  K  L  R  S  V  C  G  P  L  V  V  V  A  Q  G  L  L   : G  T  C  V  F  G  R  I  R  L  N  I  F  S  I  L  M  *  I  Q  H  T  M  I  P  K  H  G  P  C  V  K  I  L  F  L  I  W  T  R  T  K  S  S  M  L :   A  I  T  K  T  E  L  V  V  K  H  W  S  S  S  S  L  I  F  M  P  G  R  L  L  I  R  V  M  M  F  I  C  K  Q  L  H  P  R  Q  N  C  S  T  K  I  L  R  L  T  R  R  N  *  R  C  K  L  R  M  M  S  W  R  S  M  A  M  Q  L  V  R  T  H  F  Q  E  N  S  Y  W  V  K  V  R  K  R  L  N  M  I  V  L  V  G  L  *  R  D  R :   R  C  H  F  L  E  A  N  M  K  R  M  F  T  S  I  T  T  P  L  F  G  V  H  G  G  K  I  T  N  G  V  I  S  A  A  N  K  Q  S  E  I  A  I  V  L  V  L  L  E  L  K  Q  Q  K  P  L  L  V  L  *  K  P  T  L  L  V  R  R  L  L  K  :  I  H  M  C  L  S  R  R  R  G  K  L  L  G  G  L  K  Y  R  K  I  *  Y  *  T  R  K  S  S  L  K  L  *  R  R :   K  R  R  G  D  E  K  R  K  M  N  G  R  G  N  I  M  L  N  I  M  M  R :   L  H  L  K  K  W  R  H  I  G  *  S  G  F  T  K  M  I  Q  *  R  T  S  F  T  E  S  *  I  W  P  N  C  S  P  L  R  E  N  I  S  W  D  H  V  P  V  L  G  E  I  G  Y  D  I  F  F  V  E  N  C  I  V  M  K  S  L  C  W  D  C  L  R  S  I  S  S  L  I  *  Y  L  K  V  V  Y  N  C  M  T  H  S  L  R  T  Y  V  Q  *  D  T  *  E  L  G  S  I  Y  V  R  V  M  C  C  I  H  R  F  V  V  V  I  Q  A  K  P  V  C  L  K  F  F  L  W  F  C  I  T  V  C  L  L  S  A  F  V  C  L  Q  L  C  E  C  D  R  L  L  M  H  W  L  I  E  *  K  I  L  L  F  H  S  T  I  K  I   </first_frame>
            <second_frame>  I  S  D  S  N  S  N  C  R  P  E  S  I  I  F  L  G  F  R  Q  S  K  Y  F  L  V  Y  R  S  N  Y  G  Y  R  I  R :   C  I  *  I  *  G  G  S  Q  E  T  V  G  I  G  R  S  K  K  G  W  S  C  S  G  *  V  G  R  R  W  K  R  D  *  S  S  Y  S  S  V  Y  V  F  R  S  L  V  P  *  C  R  K  T   : K  F  E  T  S  K  E  L  E  I  R  P  *  L  H  K  I  M  V  *  Q  R  C  E  D  I  S  G  *  Q  V  *  E  G  C  M  *  K  :  L  W  S  N  V  P  *  H  *  V  M  Y  G  K  A  T  Q  T  G  S  K  M  D  R  E  T  H  C  S  *  *  E  D  R  A  V  *  A  G  L  *  W  *  K  G  S  L  E  W  L  *  C  C  F  L  C  P  R  H  *  T  I  *  S  K  G  *  S  K  K  E  I  P  Q  R  A  T  T  *  K  I  G  R  K  K  *  Q  G  *  Q  R  R  R  *  *  *  Q  *  G  L  *  G  C  F  E  G  R  R  S  E  G  *  *  K  Q  A  N  G  F  C  Q  S  *  E  A  C  A  D  H  W  W  W  *  H  R  D  C  *  :  E  P  A  Y  S  G  G  Y  G  *  I  S  S  Q  S  *  C  K  F  S  T  L  *  S  Q  N  T  V  H  A  *  R  S  S  S  *  Y  G  P  E  R  K  V  L  C   : W  R  *  P  K  Q  S  *  W  S  S  I  G  V  Q  A  A  *  Y  S  C  L  G  G  F  *  *  G  S  *  C  S  Y  A  S  S  S  I  P  G  R  I  A  L  Q  K  F  *  D  *  Q  G  E  I  E  G  A  N  *  G  *  C  H  G  E  V  W  Q  C  S  *  *  G  H  T  S  K  R  T  P  T  G  S  K  *  E  R  G  *  I  *  S  C  W  *  D  C  E  G  T   : G  D  V  T  S  *  K  Q  I  *  R  G  C  L  H  Q  *  P  H  H  C  L  G  F  M  V  E  R  S  P  M  G  L  *  V  L  Q  T  N  N  Q  K  *  L  L  Y  W  C  C  W  N  *  S  S  R  S  L  C  W  S  Y  E  S  Q  H  C  S  *  G  G  C  *  R :   Y  T  C  A  C  R  G  E  E  A  S  Y  L  G  D  *  S  T  G  R  S  D  T  R  P  E  K  A  H  *  S  Y  K  E   : G  R  G  E  E  T  R  R  E  R  *  T  E  E  E  I  *  C  *  I  *  *  *   : G  Y  T  *  R  N  G  G  I  *  D  E  A  G  S  P  R  *  S  N  E  G  L  P  S  L  N  R  R  Y  G  Q  I  V  H  L  L  G  K  T  S  V  G  T  M  C  Q  S  *  V  K  L  G  M  I  F  S  L  S  K  I  V  L  *  *  R  V  C  V  G  I  A  *  D  L  F  L  L  *  F  S  T  L  K  L  Y  T  T  A  *  H  T  L  *  E  H  M  Y  N  K  I  P  K  N  W  E  A  S  M  Y  V  *  C  A  V  F  T  G  L  W  L  *  F  R  Q  S  L  F  V  *  S  S  F  S  G  S  V  L  L  F  A  F  F  Q  R  L  C  V  F  S  F  V  N  V  T  D  Y  *  C  I  G  S  L  N  K  K  F  C  C  S  I  Q  R  S  K  L  </second_frame>
            <third_frame>   F  P  T  R  I  L  I  A  G  R  R  V  L  Y  F  *  G  F  V  N  P  N  I  F  W  F  T  E  V  I  M  A  T  A  S   : G  A  F  K  S  R  E  D  H  R  K  Q  L  E  L  E  E  A  R  K  A  G  L  A  P  A  E  L  D  E  D  G  K  E  I  N  P  H  I  P  Q  Y  M  S  S  A  P  W  Y  L  N  A  E  R  P  :  S  L  K  H  Q  R  N  W  K  S  D  P  N  Y  T  K  S  W  Y  D  R  G  A  K  I  Y  Q  A  D  K  Y  R  K  G  A  C  E  N :   C  G  A  M  S  H  D  T  R  S  C  M  E  R  P  R  K  L  G  A  K  W  T  G  K  H  I  A  P  D  E  K  I  E  Q  F  E  L  D  Y  D  G  K  R  D  R  W  N  G  Y  D  A  A  S  Y  A  H  V  I  E  R  Y  E  A  R  D  E  A  R  R  K  Y  L  K  E  Q  Q  L  K  K  L  E  E  K  N  N  K  D  D  K  E  G  G  D  S  D  N  E  D  C  E  D  A  L  K  V  D  E  A  K  V  D  E  S  K  Q  M  D  F  A  K  V  E  K  R  V  R  T  T  G  G  G  S  T  G  T  V  R :   N  L  R  I  R  E  D  T  A  K  Y  L  L  N  L  D  V  N  S  A  H  Y  D  P  K  T  R  S  M  R  E  D  P  L  P  D  M  D  P  N  E  K  F  Y  A  :  G  D  N  Q  N  R  V  S  G  Q  A  L  E  F  K  Q  L  N  I  H  A  W  E  A  F  D  K  G  H  D  V  H  M  Q  A  A  P  S  Q  A  E  L  L  Y  K  N  F  K  I  N  K  E  K  L  K  V  Q  T  K  D  D  V  M  E  K  Y  G  N  A  A  S  E  D  T  L  P  R  E  L  L  L  G  Q  S  E  K  E  V  E  Y  D  R  A  G  R  I  V  K  G  Q  :  E  M  S  L  P  R  S  K  Y  E  E  D  V  Y  I  N  N  H  T  T  V  W  G  S  W  W  K  D  H  Q  W  G  Y  K  C  C  K  Q  T  I  R  N  S  Y  C  T  G  A  A  G  I  E  A  A  E  A  S  A  G  L  M  K  A  N  I  A  R  K  E  A  A  E   : D  T  H  V  P  V  E  E  K  R  Q  A  T  W  G  T  E  V  P  E  D  L  I  L  D  Q  K  K  L  T  E  A  I  K  K  :  E  E  E  R  R  R  E  E  K  D  E  R  K  R  K  Y  N  V  K  Y  N  D  E  :  V  T  P  E  E  M  E  A  Y  R  M  K  R  V  H  Q  D  D  P  M  K  D  F  L  H  *  I  V  D  M  A  K  L  F  T  S  *  G  K  H  Q  L  G  P  C  A  S  L  R  *  N  W  V  *  Y  F  L  C  R  K  L  Y  C  D  E  E  S  V  L  G  L  L  E  I  Y  F  F  F  D  L  V  P  *  S  C  I  Q  L  H  D  T  L  F  K  N  I  C  T  I  R  Y  L  R  I  G  K  H  L  C  T  C  N  V  L  Y  S  P  V  C  G  C  N  S  G  K  A  C  L  F  E  V  L  S  L  V  L  Y  Y  C  L  P  S  F  S  V  C  V  S  S  A  L  *  M  *  Q  I  T  N  A  L  A  H  *  I  K  N  S  V  V  P  F  N  D  Q  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12736" stop="12679"/>
                    <exon start="12600" stop="12437"/>
                    <exon start="12354" stop="12242"/>
                    <exon start="11902" stop="11489"/>
                    <exon start="11378" stop="11243"/>
                    <exon start="11150" stop="10851"/>
                    <exon start="8631" stop="8415"/>
                    <exon start="7551" stop="7448"/>
                    <exon start="7089" stop="7021"/>
                    <exon start="6938" stop="6861"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFVNPNIFWFTEVIMATASGAFKSREDHRKQLELEEARKAGLAPAELDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRNWKSDPNYTKSWYDRGAKIYQADKYRKGACENCGAMSHDTRSCMERPRKLGAKWTGKHIAPDEKIEQFELDYDGKRDRWNGYDAASYAHVIERYEARDEARRKYLKEQQLKKLEEKNNKDDKEGGDSDNEDCEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDMDPNEKFYAGDNQNRVSGQALEFKQLNIHAWEAFDKGHDVHMQAAPSQAELLYKNFKINKEKLKVQTKDDVMEKYGNAASEDTLPRELLLGQSEKEVEYDRAGRIVKGQEMSLPRSKYEEDVYINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEASAGLMKANIARKEAAEDTHVPVEEKRQATWGTEVPEDLILDQKKLTEAIKKEEERRREEKDERKRKYNVKYNDEVTPEEMEAYRMKRVHQDDPMKDFLH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6689" stop="6483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCIQLHDTLFKNICTIRYLRIGKHLCTCNVLYSPVCGCNSGKACLFEVLSLVLYYCLPSFSVCVSSAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14725" PGL_stop="18520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14725" e_stop="14765"/>
            <exon e_start="14859" e_stop="14953"/>
            <exon e_start="15029" e_stop="15129"/>
            <exon e_start="16743" e_stop="16812"/>
            <exon e_start="18028" e_stop="18080"/>
            <exon e_start="18219" e_stop="18520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.976"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="14725" e_stop="14765" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14766" i_stop="14858" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14859" e_stop="14953" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14954" i_stop="15028" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15029" e_stop="15129" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15130" i_stop="16742" i_length="1613"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16743" e_stop="16812" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16813" i_stop="18027" i_length="1215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18028" e_stop="18080" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="18081" i_stop="18218" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="18219" e_stop="18520" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14725" stop="14765"/>
              <exon start="14859" stop="14953"/>
              <exon start="15029" stop="15129"/>
              <exon start="16743" stop="16812"/>
              <exon start="18028" stop="18080"/>
              <exon start="18219" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAG : GGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAG : GTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTT : CTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCA : GCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCA : AGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCAC</gDNA_template>
            <first_frame> Q  F  L  H  L  P  Q  N  F  N  G  S  R  R :   A  T  N  I  L  Q  S  L  G  S  A  R  Y  S  L  V  K  K  S  *  T  S  R  R  S  T  E  P  R  K  T   : G  L  *  H  G  D  Y  L  P  T  G  S  *  P  M  W  K  C  T  K  R  V  *  R  V  F  I  F  L  Q  E  Y  Q  L  :  L  E  T  V  Q  E  V  S  T  *  R  *  A  L  F  F  I  V  R  H  L  T  G   : S  *  G  T  S  S  W  S  G  W  W  R  H  I  C  Q  C  S  :  R  *  T  K  E  G  Q  G  R  S  K  R  C  K  E  N  E  A  F  K  *  T  R  L  *  L  *  R  *  S  R  S  N  V  I  W  T  L  V  K  R  *  V  C  R  F  W  N  D  K  I  V  D  F  D  M  Y  K  Y  I  W  R  P  R  I  V  F  L  *  Y  R  R  T  S  D  *  K  D  I  V  S  Q  C  I  F  F  S  V  A  I  I  Y  S  K  *  Y  M  F  L  T   </first_frame>
            <second_frame>  S  F  F  I  S  H  K  I  S  M  E  A  E   : G  Q  R  T  S  S  N  P  S  A  V  L  A  T  L  L  S  K  R  A  K  L  H  E  D  L  R  N  L  E  K  Q  :  V  Y  D  M  E  T  I  Y  L  Q  D  P  S  Q  C  G  N  V  L  K  G  F  E  G  F  L  S  S  S  K  S  T  S  F :   L  K  R  S  R  K  F  Q  P  E  D  R  L  F  S  L  S  S  V  T  S  P  A  :  A  E  E  Q  A  L  G  R  D  G  G  G  I  S  A  N  V  Q :   G  R  Q  R  K  G  R  G  G  P  R  D  A  K  R  M  R  H  S  S  E  P  D  Y  D  Y  E  D  D  P  D  L  M  *  F  G  L  W  *  N  G  R  F  V  D  F  G  M  I  K  L  S  I  L  T  C  T  N  I  F  G  G  L  E  L  Y  F  F  S  I  G  G  H  Q  I  K  K  I  L  Y  H  S  A  Y  F  S  L  L  L  L  Y  I  V  S  S  I  C  F  *  P  </second_frame>
            <third_frame>   V  S  S  S  P  T  K  F  Q  W  K  P  K  :  G  N  E  H  P  P  I  P  R  Q  C  S  L  L  S  C  Q  K  E  L  N  F  T  K  I  Y  G  T  S  K  N  R :   F  M  T  W  R  L  F  T  Y  R  I  L  A  N  V  E  M  Y  *  K  G  L  K  G  F  Y  L  P  P  R  V  P  A   : S  *  N  G  P  G  S  F  N  L  K  I  G  S  F  L  Y  R  P  S  P  H  R  Q :   L  R  N  K  L  L  V  G  M  V  E  A  Y  L  P  M  F   : K  V  D  K  G  R  A  G  E  V  Q  E  M  Q  R  E  *  G  I  Q  V  N  Q  T  M  T  M  K  M  I  Q  I  *  C  N  L  D  S  G  E  T  V  G  L  S  I  L  E  *  *  N  C  R  F  *  H  V  Q  I  Y  L  A  A  *  N  C  I  S  L  V  S  A  D  I  R  L  K  R  Y  C  I  T  V  H  I  F  L  C  C  Y  Y  I  *  *  V  V  Y  V  F  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14726" stop="14765"/>
                    <exon start="14859" stop="14953"/>
                    <exon start="15029" stop="15129"/>
                    <exon start="16743" stop="16812"/>
                    <exon start="18028" stop="18080"/>
                    <exon start="18219" stop="18321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFISHKISMEAEGQRTSSNPSAVLATLLSKRAKLHEDLRNLEKQVYDMETIYLQDPSQCGNVLKGFEGFLSSSKSTSFLKRSRKFQPEDRLFSLSSVTSPAAEEQALGRDGGGISANVQGRQRKGRGGPRDAKRMRHSSEPDYDYEDDPDLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19506" PGL_stop="21650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19506" e_stop="19586"/>
            <exon e_start="20209" e_stop="20474"/>
            <exon e_start="21254" e_stop="21650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19506" e_stop="19586" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.806">
            <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20209" e_stop="20474" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="21254" e_stop="21650" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19506" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19512" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19553" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19559" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG : CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG : GTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCAACA</gDNA_template>
            <first_frame> S  Y  S  S  F  F  L  P  L  K  A  H  F  N  F  Y  F  A  L  L  M  S  F  K  F  R  G  :  P  N  A  S  S  G  M  G  V  A  D  H  G  K  N  A  F  L  E  L  K  R  K  K  V  H  R  Y  V  I  F  K  I  D  E  K  K  K  E  V  V  V  E  K  T  G  S  P  A  E  T  F  D  D  F  T  A  S  L  P  E  N  D  C  R  Y  A  V  Y  D  F  D  F  V  T  S  E  N  C  Q  K  S  K  I  F  F  V  H  W :   S  P  A  T  S  R  I  R  A  K  M  L  Y  A  T  S  K  D  A  F  K  R  E  L  D  G  F  H  Y  E  I  Q  A  T  D  P  T  E  V  D  L  E  V  L  K  D  R  A  H  *  A  I  L  Q  *  T  L  C  F  Q  L  S  I  *  L  V  S  V  Y  G  V  G  I  C  F  A  F  F  S  D  V  *  T  L  G  N  L  H  N  N  I  I  S  V  V  A  N  F  L  I  V  D  Y  T  S  V  E  F  M  I  C  P  L  L  S  Y  F  S  *  G  L  *  I  *  I  C  L  S  L  E  S  T </first_frame>
            <second_frame>  H  I  P  L  F  F  F  L  S  R  L  I  L  I  F  I  L  L  F  S  C  L  S  N  S  E  G :   Q  M  L  L  L  E  W  V  W  L  I  T  A  K  M  H  S  W  S  *  R  G  R  K  F  I  D  T  *  F  S  K  S  M  K  R  K  R  R  L  L  L  R  K  L  A  A  L  L  K  P  L  M  T  L  L  L  L  C  Q  K  M  I  A  D  M  R  C  M  T  L  I  L  *  L  L  R  I  A  K  R  A  R  Y  S  L  F  I   : G  L  L  Q  H  L  V  F  V  Q  R  C  F  T  P  P  L  K  T  H  L  K  E  S  S  M  V  F  I  M  R  F  R  L  L  I  Q  Q  K  L  I  L  K  C  *  K  T  V  L  T  E  P  S  C  N  K  H  Y  V  S  S  *  A  F  S  L  L  V  Y  M  V  L  V  F  V  L  L  F  S  Q  M  F  E  H  L  G  T  C  I  I  I  *  Y  Q  W  L  P  I  F  *  L  W  T  I  Q  V  *  N  S  *  F  V  L  S  Y  P  I  S  A  K  D  Y  E  Y  K  Y  V  F  R  *  N  Q   </second_frame>
            <third_frame>   I  F  L  F  F  S  S  S  Q  G  S  F  *  F  L  F  C  S  S  H  V  F  Q  I  Q  R   : A  K  C  F  F  W  N  G  C  G  *  S  R  Q  K  C  I  L  G  V  E  E  E  E  S  S  *  I  R  D  F  Q  N  R  *  K  E  K  G  G  C  C  *  E  N  W  Q  P  C  *  N  L  *  *  L  Y  C  F  F  A  R  K  *  L  P  I  C  G  V  *  L  *  F  C  D  F  *  E  L  P  K  E  Q  D  I  L  C  S  L  :  V  S  C  N  I  S  Y  S  C  K  D  A  L  R  H  L  *  R  R  I  *  K  R  A  R  W  F  S  L  *  D  S  G  Y  *  S  N  R  S  *  S  *  S  A  E  R  P  C  S  L  S  H  L  A  I  N  T  M  F  P  A  K  H  L  A  C  *  C  I  W  C  W  Y  L  F  C  F  F  L  R  C  L  N  T  W  E  P  A  *  *  Y  N  I  S  G  C  Q  F  S  N  C  G  L  Y  K  C  R  I  H  D  L  S  S  L  I  L  F  Q  L  R  I  M  N  I  N  M  S  F  V  R  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19506" stop="19586"/>
                    <exon start="20209" stop="20474"/>
                    <exon start="21254" stop="21404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSSFFLPLKAHFNFYFALLMSFKFRGPNASSGMGVADHGKNAFLELKRKKVHRYVIFKIDEKKKEVVVEKTGSPAETFDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFVHWSPATSRIRAKMLYATSKDAFKRELDGFHYEIQATDPTEVDLEVLKDRAH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21512" PGL_stop="20869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21512" e_stop="20869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21512" e_stop="20869" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21512" stop="20869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21512" stop="20924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21512" stop="20927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</gDNA_template>
            <first_frame> V  P  K  C  S  N  I  *  E  K  S  K  T  N  T  N  T  I  Y  T  N  K  L  N  A  *  L  E  T  *  C  L  L  Q  D  G  S  V  S  T  V  F  Q  H  F  K  I  N  F  C  W  I  S  S  L  N  L  I  M  K  T  I  E  L  S  F  K  C  V  F  R  G  G  V  K  H  L  C  T  N  T  R  C  C  R  R  P  K  E  T  K  V  M  H  *  E  C  E  K  E  K  V  *  S  V  T  Y  S  S  L  R  C  W  T  C  T  S  I  P  L  Y  V  P  *  N  *  F  F  N  *  N  D  M  S  K  S  S  K  R  I  Q  R  Q  R  Q  N  S  R  S  I  L  K  I  L  L  P  K  D  *  H  W  E  F  A  T  E  T  *  E  *  M  H  N  L  F  S  *  N  E  S  K  M  *  L  K  N  T  T  K  L  I  S  F  C  I  W  K  R  Q  T  F  *  H  *  K  E  I  S  L  T  N  D  I  L   </first_frame>
            <second_frame>  F  P  S  V  Q  T  S  E  K  K  A  K  Q  I  P  T  P  Y  T  L  T  S  *  M  L  S  W  K  H  S  V  Y  C  K  M  A  Q  *  A  R  S  F  S  T  S  R  S  T  S  V  G  S  V  A  *  I  S  *  *  K  P  S  S  S  L  L  N  A  S  L  E  V  A  *  S  I  F  A  R  I  R  D  V  A  G  D  L  R  K  Q  K  *  C  T  E  N  V  R  R  K  K  F  E  V  L  L  I  V  L  *  D  A  G  L  A  H  Q  S  H  Y  T  C  H  E  I  D  F  S  T  K  M  I  C  R  N  Q  A  N  A  Y  R  G  K  G  K  T  V  E  A  F  S  K  F  C  F  L  K  T  S  I  G  S  L  L  Q  R  P  E  N  K  C  I  I  Y  F  R  K  M  R  V  R  C  D  *  K  I  Q  P  N  *  F  L  F  A  F  G  R  D  K  H  F  D  I  E  K  K  S  L  *  Q  M  I  Y  *  </second_frame>
            <third_frame>   S  Q  V  F  K  H  L  R  K  K  Q  N  K  Y  Q  H  H  I  H  *  Q  A  K  C  L  A  G  N  I  V  F  I  A  R  W  L  S  E  H  G  L  S  A  L  Q  D  Q  L  L  L  D  Q  *  P  E  S  H  N  E  N  H  R  A  L  F  *  M  R  L  *  R  W  R  K  A  S  L  H  E  Y  E  M  L  Q  E  T  *  G  N  K  S  N  A  L  R  M  *  E  G  K  S  L  K  C  Y  L  *  F  S  E  M  L  D  L  H  I  N  P  I  I  R  A  M  K  L  I  F  Q  L  K  *  Y  V  E  I  K  Q  T  H  T  E  A  K  A  K  Q  *  K  H  S  Q  N  F  A  S  *  R  L  A  L  G  V  C  Y  R  D  L  R  I  N  A  *  S  I  F  V  K  *  E  *  D  V  I  K  K  Y  N  Q  I  D  F  F  L  H  L  E  E  T  N  I  L  T  L  K  R  N  L  S  D  K  *  Y  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21181" stop="20960"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAGLAHQSHYTCHEIDFSTKMICRNQANAYRGKGKTVEAFSKFCFLKTSIGSLLQRPENKCIIYFRKMRVRCD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21422" stop="21228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLQDGSVSTVFQHFKINFCWISSLNLIMKTIELSFKCVFRGGVKHLCTNTRCCRRPKETKVMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26179" PGL_stop="25665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26179" e_stop="25665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="26179" e_stop="25665" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26179" stop="25665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26038" stop="25665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGACAGACAGTCGTGGTCGCGACGGACCTTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCATTCCCCTCGATGGCAAGTATGACGGACCGTCATAGGCACAACGGTTCGTCGAGGGTCTCCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGCCACGACGGACCATCACAAGTTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTTGTCTCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAATAGTATTAATAATACTGTGAAACCACG</gDNA_template>
            <first_frame> S  R  Q  T  V  V  V  A  T  D  L  H  G  L  R  R  P  I  L  V  Q  F  L  L  L  L  S  S  F  P  S  M  A  S  M  T  D  R  H  R  H  N  G  S  S  R  V  S  V  L  K  H  F  N  S  W  N  L  G  T  G  I  T  S  L  N  F  T  T  N  L  Q  D  G  P  S  *  P  R  R  T  I  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  R  R  L  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  N  S  I  N  N  T  V  K  P   </first_frame>
            <second_frame>  R  D  R  Q  S  W  S  R  R  T  F  M  D  S  V  V  P  Y  L  C  N  F  F  C  C  S  L  H  S  P  R  W  Q  V  *  R  T  V  I  G  T  T  V  R  R  G  S  P  F  *  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  T  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  V  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  Q  R  T  V  I  S  S  V  G  C  L  F  C  I  S  L  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  I  V  L  I  I  L  *  N  H  </second_frame>
            <third_frame>   A  T  D  S  R  G  R  D  G  P  S  W  T  P  S  S  H  T  C  A  I  S  S  A  A  L  F  I  P  L  D  G  K  Y  D  G  P  S  *  A  Q  R  F  V  E  G  L  R  S  K  T  L  Q  L  L  E  S  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  G  R  T  V  I  A  T  T  D  H  H  K  F  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  H  K  H  N  G  P  S  *  A  P  *  V  V  S  S  A  F  L  C  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  R  K  *  Y  *  *  Y  C  E  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26179" stop="25949"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRQTVVVATDLHGLRRPILVQFLLLLSSFPSMASMTDRHRHNGSSRVSVLKHFNSWNLGTGITSLNFTTNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26060" stop="25830"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRFVEGLRSKTLQLLESGYWDHFSELHDEPAGRTVIATTDHHKFRNPTLGQTSPSSFSSCTTLPPTDRHKHNGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25948" stop="25736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRTITSFVIPHLVRLPHLPSAAALRCHLRTVTSTTDRHKLRRLSLLHFFAQNLRIQLWTDFLQNKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 261 chains have been computed
$ 
$ memory statistics:
$ 359784 bytes spliced alignments in total
$ 169 spliced alignments have been stored
$ 2128 bytes was the average size of a spliced alignment
$ 15680 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2240 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 284 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 08:59:52
-->
