<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 22:07:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346269" ref_strand="-" ref_description="SGN-U346269        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G36790.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:15427269-15428945 REVERSE | Aliases: F13K3.19, F13K3_19 (evalue: 5e-57, score=218) genbank/nr: gi|46318043|gb|AAS87591.1| zeatin O-glucosyltransferase 2 [Arabidopsis thaliana] >gi|4415924|gb|AAD20155.1| putative glucosyl transferase [Arabidopsis thaliana] >gi|66774039|sp|Q9ZQ95|FOGT1_ARATH Flavonol-3-O-glycoside-7-O-glucosyltransferase 1 >gi|15228035|ref|NP_181217.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (evalue: 3e-55, score=218)">
      <seq>aaatggttaagagatgaaaattttcaagatagggttagaggaagagggatgattattagaggttgggccccacaagtcctaatattatctcatccttccgtcggaggatttttaacacactgtggatggaactcagcactagaagggatctctcgtggggtgccaaagactacttttcctatgtttgccgaacaattttacaatgagaagtttattgtaaatatcttgaagactggagttggagttggtgtttaagtgagtactacctcttggaatgaaaagaagagtggagtattggttagcaaagattaagtcaaaagagccataaatcaattaatggatcaaggattagagggttaagaaagaagaaaaatagcaaaggatttgtcacatatttcaaagaaggctatacaagaagaaggtttttcatacttggatatccaattattggtttaagatgtcatgcatgtactcaaaaataaaggggaaattgaatagatttttaaggaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="10063" stop="8957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9763" g_stop="9256" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="536"/>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U346269" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9763" e_stop="9256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA</genome_strand>
        <mrna_strand>AAATGGTTAAGAGATGAAAATTTTCAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTTTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGGGTGCCAAAGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATTGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTTAAGTGAGTACTACCTCTTGGAATGAAAAGAAGAGTGGAGTATTGGTTAGCAAAGATTAAGTCAAAAGAGCCATAAATCAATTAATGGATCAAGGATTAGAGGGTTAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTTTTCATACTTGGATATCCAATTATTGGTTTAAGATGTCATGCATGTACTCAAAAATAAAGGGGAAATTGAATAGATTTTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="28917" stop="27872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28617" g_stop="28174" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28617" e_stop="28174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAATTTTGATAAAAGAATCACATATACCCCTAAATAAATTTTTT-TAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCGTTAAATAAAAGGTATATGTGAGCCATTTTGTAACGATAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGAGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328205" ref_strand="+" ref_description="SGN-U328205        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>taacttaatcaaaccctctaagtgtagttttctttgttttttgtaattttcgttcgatggatgaagaggaagaactactgagtaaacagaaaagaaagcgtcagaaatgatggtcttggtgatggtattagatgggaactactatcattcatgaaaatattagtcttgattagtgatcatgaagatattaatcttgattagtcccatggtgtaaggtaattaagggcaacttctatatcctttggcatttgagtctcttgataggctctatctctctatatataagaatttaaatttatggtaaaaaagactagcattttatgctaattatttagtcctttacttattatttcttatttcagtatttttcttgtgtttgtaagctacaaatagttaatgaatgagtgttttgatgtattatgcctaatatggccagaataataatggttttagtgatgtattaatgcttgggtgtgttttttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="30864" stop="29779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30564" g_stop="30078" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U328205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30564" e_stop="30078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAC</genome_strand>
        <mrna_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325793" ref_strand="+" ref_description="SGN-U325793        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:7773052-7780575 REVERSE | Aliases: F2E2.13, F2E2_13(evalue: 3e-09, score=59.3) genbank/nr: gi|37536608|ref|NP_922606.1| putative kinesin-related protein [Oryza sativa (japonica cultivar-group)] gi|13357244|gb|AAK20041.1| putative kinesin-related protein [Oryza sativa (japonica cultivar-group)] gi|31433374|gb|AAP54893.1| putative kinesin-related protein [Oryza sativa (japonica cultivar-group)](evalue: 8e-14, score=80.9)">
      <seq>cagaatgatactccaaagagcaacaacaagtacactaacttcaatagagcacctcaaaagcttagtcagtcccaagaactttgggtggatcgacttcattcagatcgcaaaagtagtgaatcagagggtgaaaatagttcctccgacggaattacttcttctgttgtagtggattacttggctagaatacaattgcttgagaacaagcttggtgaagcattagaagccaataagaagtacaaaattcagcttcaacggttcaagactgaggaacgtagaggacattcaccggcttccaagaaatcagaaggggacaacgaaatggtgaaaaggttcgaacatacaaaggctttactagaagcagaactaaaagacattcgagaacgatactttcaaatgagtcttaagtatgctgaagtagaagcacaaagagaggatcttgttatgaaactgaaggcagttaagagcggaaagagatggttctcttgaatcacgactagcattctcgcggagcattcatcctaaccttaggtaaaccaatccacattttcacattatgttgctcggactcttcaacaaatgtctcctgatacacgttagatcttccaaaagtactacgtatattttttgaaaatcgatttaacacaggcgcaacaacatttttgcagagttacgagctatatagtttagcacatatattacccttgtaatttatcctcaaaataactaaaagcaagatatagacaataaaaaattagaaccaaataagattgttatatacaatggcaaggcatagtggatatttttagacaaaaaagtaccccctaacaaaagtgtgatattattttttatgtatagtaaaacaacccagtgacaaagttagaaattttatcaacggtattcaaccgttttcaagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="34961" stop="32588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34661" g_stop="34536" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34535" i_stop="34265" i_length="271">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34264" g_stop="34134" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="257" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34133" i_stop="33554" i_length="580">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33553" g_stop="32891" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="920" r_length="663" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="921" polyA_stop="957"/>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U325793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34661" e_stop="34536"/>
          <exon e_start="34264" e_stop="34134"/>
          <exon e_start="33553" e_stop="32891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAGGTACCCTTTATTCCCTTCTATTCATTTTTCACCTTTGAAGCAGTATGCTGCTCAGACTCTCCAAAAATGTTGCCACACCTGTATCGTATCCTTCGGACAGGCACTACTTTTGGAGGATCGAACAAGCACCTGACAACATTTTTGAAGAGTCTGAGCAACATAGTGAAGCACAATATATCACCAATAGGCCTAGCTGGTCTTTTGAGTTTCAAGTTTTCCCTGTCAAATGCTTAACTCCTTTTTGCTCTTTTAAAACACTTTGTTCATCCAGGGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACGGTATGCTTCAATATCTTGGAATTTAAATCTGTCGCATTTATTAGTTTTTTCTTGTTGCTCGCGGGGGTGCATCATCTACTTCAAATACAAAAAACAAAAAAGAAAGTCATTGTATGTATAGTGTGATTTTCAGGTGAAGTAGCTTCATTGAGTTCGGATGAACCCTCTTCCACCCTCTAGCTGTGTTTCTGCAGACAGGACCTTAAAAAGGCTATGCTTAGCAGCAAATAGCTATGAAAACATACTGAACTACGATAATCTACATGATATGTTATATAAGCTATCGGAATATTTATCAACGACCCATCATCTCAATATAGAACTTAACAACCTTACTTCAACATGTTATGTTCTATAGGCTAGCACCATCTTATCCTTGAGCTCTAAGGAGACAAGAAACAAAGTCTGGTTGATGAAACAGTTGATTCCTTATAAGGTCACTCAACTTAATGAAATTACCTAGTAAAGTCATTTAATACAACACATTCACTTAGCAAAGATAATAGAACACCTGCATTGTTTAATTATGTGGAACGAGTAATGTATGATGTTCGAGTCTTTTGAGCTGTTATTCTTGTAGGTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTCTAGCACATATATTACCATTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAGAAAGTACACACTAACAAAAGTGTGATATTATTCTCTATGTATAGTAAAACAACACAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTCTTCAAGATTA</genome_strand>
        <mrna_strand>CAGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAG...............................................................................................................................................................................................................................................................................GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAAAATCGATTTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTTTAGCACATATATTACCCTTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAAAAAGTACCCCCTAACAAAAGTGTGATATTATTTTTTATGTATAGTAAAACAACCCAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTTTTCAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333427" ref_strand="+" ref_description="SGN-U333427        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | permease, cytosine/purines, uracil, thiamine, allantoin family protein, contains Pfam PF02133: permease, cytosine/purines, uracil, thiamine, allantoin family | chr5:898240-900158 REVERSE | Aliases: None(evalue: 2e-67, score=251) genbank/nr: gi|42567620|ref|NP_568122.2| permease, cytosine/purines, uracil, thiamine, allantoin family protein [Arabidopsis thaliana] >gi|11358912|pir||T48383 uracil transporter-like protein - Arabidopsis thaliana >gi|7378642|emb|CAB83318.1| uracil transporter-like protein [Arabidopsis thaliana] (evalue: 2e-65, score=251)">
      <seq>atccccaccatgtaattttcacaaaaccaaaacacatactttcccttacaacatcttcaaaaataccaactaatagtagtactaaaattctcatatcacaaaaaaaacttgtacacacttttttcaacaaaaaatgtaacaaaaacattatttctcctatggcatcatcatcaattaatcaatttgatgatgaatttcaccctgaccctacccttacaaatgatgatctcaagcctacgtcgatcgatcaacgtaacttttcaggttgggaaatgtctagtctatggattggactagttgttggtgtgccctcatattacctagctggtagcctagttgatcttggcatgtcatggtggcaaggtattgcaattgttgtattagctaatttaataactttactaccacttgtattaataggtcaaccaggcacaaaatttggcatatcatttcctgttttagctagatcatcatttggcattagaggtgcacatattcctacactacttagagctttagttggttgtggttggtatggtattgaaacatggattggtggtgaagcaattttcttgttgttaccaaaagttgttaaggattcacatttgtcacaatcaatatcttggcttggcacatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="49141" stop="50381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49441" g_stop="50081" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U333427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49441" e_stop="50081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCT</genome_strand>
        <mrna_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="57631" stop="58943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57931" g_stop="58643" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57931" e_stop="58643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="58151" stop="59409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58451" g_stop="59109" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58451" e_stop="59109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="60247" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59947" g_stop="59761" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59760" i_stop="59017" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59016" g_stop="58503" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59947" e_stop="59761"/>
          <exon e_start="59016" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCACATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTTCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTCTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACCTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGTTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAACCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGGGGACGCGGTGGTCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAGGTGTGAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCAGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTTCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCGATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGTTATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTTGGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="58223" stop="59577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58520" g_stop="59277" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58520" e_stop="59277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="58623" stop="59549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58923" g_stop="59253" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58923" e_stop="59253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="58830" stop="59988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59130" g_stop="59688" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59130" e_stop="59688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCTGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCACACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGACCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCCCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGAACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="60874" stop="59721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60574" g_stop="60021" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60574" e_stop="60021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGAAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGATTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="59909" stop="60942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60209" g_stop="60641" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60209" e_stop="60641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTTCTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCTCTTGCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315792" ref_strand="-" ref_description="SGN-U315792        Tomato 200607 #1 [33 ESTs aligned]">
      <seq>gccccccctcgagttttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="75841" stop="62452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64815" g_stop="64701" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.467"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64700" i_stop="64595" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64594" g_stop="64585" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="126" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64584" i_stop="64357" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64356" g_stop="64318" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="165" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64317" i_stop="64087" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64086" g_stop="64075" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="175" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64074" i_stop="63308" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63307" g_stop="62747" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="736" r_length="561" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U315792" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315792" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64815" e_stop="64701"/>
          <exon e_start="64594" e_stop="64585"/>
          <exon e_start="64356" e_stop="64318"/>
          <exon e_start="64086" e_stop="64075"/>
          <exon e_start="63307" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATAGAGA</genome_strand>
        <mrna_strand>GCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AACA-TAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320182" ref_strand="+" ref_description="SGN-U320182        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT2G36690.1 | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to IDS3 (Hordeum vulgare)(GI:4514655), leucoanthocyanidin dioxygenase (SP:P51091)(Malus domestica); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr2:15387009-15389066 FORWARD | Aliases: F13K3.9, F13K3_9 (evalue: 7e-126, score=447) genbank/nr: gi|42569681|ref|NP_181207.2| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (evalue: 6e-124, score=447)">
      <seq>cttcttttcaatttttatttttaaaaaaatgtctccatcattggcaaaatctagtgaaaaattgaagaatgaaattgaagattatcataaaggagtaaagtatttgcatgaaagtggaattcaaaaagttccaaagaaatacatttttcctatttcagaaagaccaaattgttatactataaatgaaaatccacaagttgctagcaaacacaatcttaagttgcctgtcatagatttttctcaactctatggtcctaatagagctcaagttcttgattcactctcctatgcctgtgaaaactatggattttttcagttgacaaaccatgggattccagaagaggtaataaaaaatatggtggatgttggaggaaggttttttgatcttccattagtagaaagggaaaagtacatgacaaaagacatgacaacaccagttagatatgggacaagttttaatcaaacaaaagatggtgtcttttgttggagggactttctcaagcttgtttgtgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaatcttatttataaagttagtggaagccatcctagaaagtcttggaattaacgttgcaacaaaaaacaagacacaacaaaatgatgaagaaataatgttaaaagaatttgaagatggaagccagctaatggctgttaatttttatccaccttgtcctaatcctgatttgacacttggaatgccacctcattctgattatggatttttaactcttctactccaagatgaagttgaaggtttacaagtcaagtccaatgatgattgggtcactattcaacccatccctaatgcttttgtggtcaatgttggtgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagtggcttctttgcatagtcttccattcaatagcataataaagccatcacctaaattaattagtgaaacaaatccaagtctttacaaagacacaaattttgctgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagacaagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaaagaagttattcacccgtcactataatatttatactaaattccatcaattcattaaacatgatggttgcgctcttggatgattaattaatcaccagaccaatgaagagactctccagaatatgcattttaataaaagaaaatttgttgaaattttgacaatcgacctttcaatagaatgtactatttaataatcgatcaccagatcaatgaagagactctctagaatgtgcattttaataaaaaagaatttgttgaaatttcgacaatcgacctttcggtagaatgtactgggaaatgaagtgcagccaaagaattaggagaatttggacaagttttgtttattttgactttttcattattagttactattttttgtaattggttagatcaattattaatagaaattattggtttggtatatagttcatatcaagttaaccacatatttgtattgagattattataaacgtatatacaacaactctagattcttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="64708" stop="69600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65008" g_stop="65323" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65324" i_stop="65963" i_length="640">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65964" g_stop="66211" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="564" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66212" i_stop="67288" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67289" g_stop="67643" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="919" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67644" i_stop="68483" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68484" g_stop="69301" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1737" r_length="818" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U320182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65008" e_stop="65323"/>
          <exon e_start="65964" e_stop="66211"/>
          <exon e_start="67289" e_stop="67643"/>
          <exon e_start="68484" e_stop="69301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGGTAACGTGTCGTGATATACTTTCTTTTTTAGTCTGTCCTAAGAAAGAACAACATTTCTTTATATATTTAGAAAAATTTTAACTTTGAACTTCATATATCATAAACTCTTGATGATATAATTTATGGCAGACACACATCTTAACTAAATTAAGGTCTTATTACCCCTGAATTTATTTTTTTATAATTTTATACATCTTTTGTCTTACGAAGCACACACCATGACTCCACGCAATTATGACGCGTGGGAGATATTTGGATACCACGTTAGCAAAAAAGGTGCAAAAAATTACAAAAAAAAAATAAATTCAGGGAAGGTAATAGAACCTTACAATAGTTAAGGTGTCTCTGAGATTTTCGTCAATAGTCTAGGGAGATACTTGTGCATTTTCCCTAATTTCATAGTCACAAAAATGTCATTTTTGACAACACCATAAGAAATTCATATTCTTTAGCAGTGACGTGACATGTTTCAGACCACAAATTTTAGTCAAATCAAATATCATCACATCAATTGAGACGAAATGAGTATATCATTTTAAGAGGTCCTAAATGACTATGAGTTGACCCTACACTTAATTAGTTGTATCTACCTTATTTTTAATGGTTAACTAATGTTGTGATTTTTAATGTTGTCATGCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAATTATAC</genome_strand>
        <mrna_strand>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327399" ref_strand="+" ref_description="SGN-U327399        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | pollen Ole e 1 allergen and extensin family protein, contains similarity to pistil-specific extensin-like protein precursor (PELP) (Nicotiana tabacum) SWISS-PROT:Q03211 | chr3:3051873-3052789 REVERSE | Aliases: None(evalue: 1e-49, score=192) genbank/nr: gi|22330940|ref|NP_683542.1| pollen-related protein -related [Arabidopsis thaliana](evalue: 8e-48, score=192)">
      <seq>tttgaacaaatattatttagagaaataaagtgagaattatgaaaatgaatatagtttttatagcctcattaattttggtgttttctaattttattgaagcctcagatggaatggatgttatgcatatttctggcaaagttctttgccaagattgtactcaaggatggaatgaatgggttgatggtgccaaagccatcaaaggtagcatcgtatctctgacgtgcctggacgagagaagaagagtgatgtattacggaagtgacctcacagatgaagctggaattttcgatttgattgttaaccaaacttgtcatggcaaaacaattaagccacaaaattgctttgtgagattggtttcttcacctgatcctgtttgtaatattgccaccgacttcgccggaggaaaatccggtgtaaagctccaccgtccgacggtggtttaccgggacttgctcaaatatgtgcttagccctttctactacacaactcccatgtgtgatgaacctaatattaatgatgatgataatttggagactaatgatgataaaaatcaaaacaattattaaattaagttcttatttttaattttttcttcttctaatgtttgtgtttaatttcccattttgtaaatggaaaatgacaatttatctatgttggatgagttgatgattttattttgtactattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="75124" stop="71990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74824" g_stop="74624" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74623" i_stop="74115" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74114" g_stop="73837" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="479" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73836" i_stop="72499" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72498" g_stop="72280" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="698" r_length="219" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U327399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74824" e_stop="74624"/>
          <exon e_start="74114" e_stop="73837"/>
          <exon e_start="72498" e_stop="72280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAGGTATGTAATTTATCGTAACAAAATTCAGAATTTAGACGTTATAAATTTTGAACTAATATAGAGAATAGATTCATAAATCATAAATGTATAACTTAACTCTATCTACGTAATGTCTAAACACGTCTATCTATGTCAGATGAACACAATATATGAAATTAAACACATCTATGTAAGACAGACTGAAATTATCAAATTGTGATATGGGGATGAATAGAAGTGAATAATATTATAGTTGTGTGAATTGTATTATGATCCATTGGTTAACTTATTTTTACTTATTTATATTAAACTTTGAATTTATAATATATTTAGTTGTTCACTCAAAAAATTGTTGGCAAATGTATAATATATGTATATATTATGTATACTGCCGAGAGGCTATAAATATTTTTGGCCGAAGCAACGACATACAATAACTTATTTATAAATTCAATCCATTTTGATCCGTCTTATCATATTTAACATATAAGATCACATTCATTGTGTAACTTGCATCGAATCTCGTGCAGGTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTACTACACAACTCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAATTACGTGCAA</genome_strand>
        <mrna_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345093" ref_strand="+" ref_description="SGN-U345093        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G36670.2 | Symbol: None | aspartyl protease family protein, contains Pfam profile: PF00026 eukaryotic aspartyl protease | chr2:15371867-15375237 REVERSE | Aliases: None (evalue: 2e-80, score=295) genbank/nr: gi|4415912|gb|AAD20143.1| putative protease [Arabidopsis thaliana] (evalue: 2e-78, score=295)">
      <seq>tagacatgctcgaatgttgcagagttttggtggtggtattgttgattttcctgttgttggttcttctgacccttatcttgtcggcctttattttacaaaagtgagactgggaactccggccagataatataacatgcagattgtttcaagaagtgatatactgtgggtcatctgcagtttctgtgacgattgtgctcaaacaagtggacttggggttgagctcaacttctatgatgctacactctcatcaactgcctctcctatttcttgtgcggaccaagtgtgcgcctctatagttcaaactacctctgctgagtgctctacagaaaccaatcagtgtggttacacctttcattatggagatgggagtggcacaactggtcattacgtagccgatttattatatttcgatacagtcctgggaacctcgttgattgccaactcctcagcaccaattgatgttgggtgcagcacctctcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="86652" stop="88542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86952" g_stop="87035" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87036" i_stop="87746" i_length="711">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87876" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="214" r_length="130" r_score="0.892"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87877" i_stop="87988" i_length="112">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87989" g_stop="88243" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="469" r_length="255" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U345093" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86952" e_stop="87035"/>
          <exon e_start="87747" e_stop="87876"/>
          <exon e_start="87989" e_stop="88243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGGGTAATTGTTTCACCATGTTTCTTGATTTTGAGAGTTTTGGTTGGTTGGAATGTTTTGATGAAAAAGTTTGGTTCTTTATGAAGTTTAAACTTGAAATGTGTGGAGGCTATGGCCTATAGTGTGTTTTGTGTTATTTGTTTTGTGAATTTGGTGTCAATGAAGTGTGAGTTAAATTGTCTATTCTTTGGTTTGAGAATATATTGAGATTCAATATAAAGTACTAGTAGGTGAATTCTTCCTGTTTATCATAGAGTTACCCGTTACTTGCGCTGGTGGGAGGTAGTAGAGGTGTGGAAAAGCTGGTCAGAACATCATGGTTATGGTAAAAATAAGATATTGATTTTTCAGTGTATTGAAGTACCCGTAGTGCAACGAATTGTCTCGTGCTGTTTTTCTTTTCTAGGTGGTTGTCAATTGGATGTTGGTGTTGATGCGGATGTAGCACTGATAGTTCTGTTTGTTTCAAATTGTGTTGTTTCCTATTTTGATGTAAGATTGATAAGTTGTGCTGCTAAAAGCCTAAAAATACAAACATTTTAGCTATATCCCTTTGGTTTTGGCATTTTCCTATCTGTTATTTAAGGATGATGGGCAATGTTGTTGATTTTGAGGGCTGACTATACTATGTAGATGTATATGTTGTTCTACACTATCAATTTTGTTGACCAGCATCTCTCTTTCTCTCGTTTTATACTTTTGTTGTGTTTGTAGCCTTTATTTTACAAAAGTGAGACTGGGAACTCCGCCAAGAGAATATAACGTGCAGATTGATACCGGCAGTGATATCCTGTGGGTCACCTGCAGTTCCTGTGACGATTGTCCTCGAACAAGTGGACTTGGGGTAACTCATCCTCCCCTTGTTATGAATCTTTACTTTCTTATAAAAAAGTGTGGTACTGTGGTAAAAGAGTTACCTTTTGTTACAAACTTTTGACAGTGTTATGTGCACGCAGGTTGAGCTCAACTTCTATGATGCTACAGTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCAGTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGTTTTTGGGTGG</genome_strand>
        <mrna_strand>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTATTTTACAAAAGTGAGACTGGGAACTCCGGCCAGATAATATAACATGCAGATTGTTTCAAGAAGTGATATACTGTGGGTCATCTGCAGTTTCTGTGACGATTGTGCTCAAACAAGTGGACTTGGG................................................................................................................GTTGAGCTCAACTTCTATGATGCTACACTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCATTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGATGTTGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318318" ref_strand="+" ref_description="SGN-U318318        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: AT5G22850.1 | Symbol: None | aspartyl protease family protein, contains Pfam profile: PF00026 eukaryotic aspartyl protease | chr5:7633440-7636570 REVERSE | Aliases: MRN17.8, MRN17_8 (evalue: 6e-43, score=171) genbank/nr: gi|10177232|dbj|BAB10606.1| protease-like protein [Arabidopsis thaliana](evalue: 5e-41, score=171)">
      <seq>ctatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcagtgtaacacattttagaatgtttttgtataatggaaattgttgagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="+" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="90507" stop="95111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90807" g_stop="90880" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="76" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90881" i_stop="91000" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91001" g_stop="91097" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="173" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91098" i_stop="91240" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91241" g_stop="91304" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="237" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91305" i_stop="93911" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93912" g_stop="93983" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="309" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93984" i_stop="94116" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94117" g_stop="94804" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="997" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="998" polyA_stop="1009"/>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="+" ref_id="SGN-U318318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>995</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90807" e_stop="90880"/>
          <exon e_start="91001" e_stop="91097"/>
          <exon e_start="91241" e_stop="91304"/>
          <exon e_start="93912" e_stop="93983"/>
          <exon e_start="94117" e_stop="94804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341283" ref_strand="+" ref_description="SGN-U341283        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G11560.1 | Symbol: None | PQQ enzyme repeat-containing protein, contains Pfam profile PF01011: PQQ enzyme repeat | chr5:3709482-3714042 REVERSE | Aliases: F15N18.150, F15N18_150 (evalue: 7e-112, score=400) genbank/nr: gi|7573413|emb|CAB87716.1| putative protein [Arabidopsis thaliana] (evalue: 5e-110, score=400)">
      <seq>ctttatcttgttgacacaataactggccgagtgctgctccgtatgtctcatcatggctgccagggacctgtacatgcagtatttagtgaaaattgggtcgtctatcactacttcaacctgcgtgcacacagatatgagatgtctgttgttgagatctacgaccagtctcgcgcggacaacaaagatgtcctgaagcttgttcttggaaagcataatcttagtgcgcctgtctcttcctactcgcgtcctgaaatcatgaccaagtctcaatcttacttcttcacacacagtgtgaaagcagtagcagttacctcaacagcaaaaggcatcacttccaaacaactgcttattggcacaattggtgatcaggttttggcacttgacaagcgttttcttgatcctcgtcgatcactgaaccctactcaagctgaaaaggaggaagggattatgcctcttactgatacattgccaatcatgccacaggctttcgtcacacacgcccttaaagtggaaggccttagaagcataatagctataccagcaaagctagagtcaaccaccctcgtctttgcccacggagttgatctctttttcacacggcttgctccttcaaagacatacgactctctcaccgatgatttcaattatgctttgcttctccttaccatagttgccctagttatatcaattttcgtgacgtggatttggtccgagaggaaagatttacaggagaagtggaggtgagcctttcaatcaacaaagtggaggcgagtccaaagccattacacttcagtcgttgtactgttttagtactcaaaaccttctttttttttggcactttaacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="98194" stop="94777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97895" g_stop="97818" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97817" i_stop="97688" i_length="130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97687" g_stop="97592" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="174" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97591" i_stop="97496" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97495" g_stop="97301" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="369" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97300" i_stop="97168" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97167" g_stop="97054" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="483" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97053" i_stop="95443" i_length="1611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95442" g_stop="95077" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="849" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U341283" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97895" e_stop="97818"/>
          <exon e_start="97687" e_stop="97592"/>
          <exon e_start="97495" e_stop="97301"/>
          <exon e_start="97167" e_stop="97054"/>
          <exon e_start="95442" e_stop="95077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCAGTAAGTTTTCCTTGACTCAGACCCTGTACTGCTAAAATAATTTTTGCTTGTAAAGATAATAGTCTTTTATCTCGATGTTCTTTTCTACTATTAAGTTACCAAGTATTGTTACACGCCTCTCTATGTGAAGGTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCGGTACATTTTTTCACCAATTGTTATCTTTCAGTTTGTTCTCTATAGACCTTATTTTTCATTCTGTAACCCTTGTTTACCATACTTAAATATTTGTAGGACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAGGTCAGATTTGCCTATCTCTTGTCCAAACACTAATAGCTTTACTTTCATGCTATTCTCTTGGTTAATGGAGTTGTCATTTGTTATTTTGCTTGTATCTTAGACATATCATGCTCCATATGTTGGTATAATGCAGGTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAGGTGAGAGCTTTTTAATCTTGCTGCAAAGGAAAAACACATTACATTTTGTTGAATAAAGAAATAGTCCTTTACATCAAGGGAGAGTTTTGATGGAAGGAACGGCACGGTAACGAAATAATTCCTTTATGTGCATTTATATGCATAGAGAAATTGATTGAAATGATAAATTTGGCCAATTTGTATTTCTTGATCTATGTATGCATTTGTTTGATTGGAGTAAAAACAGGAGGGGCAGGAGGAGGGGTAAAAATGGTGAGTATGGACCATTTCAGTGTAGGTAAGAGAGTAAATGATTGAGTACCTTTTTTTTTTCTCGTTAAATAGTTGGGTACTCTTTTATGTCAGATTTTTCAATAACTGAATGGGAAGGGAGTGTATTATATTTGATTCAGTAGTTCAATTTCAACTTTACCAAAATACTGCAAAGAAAATCATCAATAATTCACCAAGGGGAAGTAAATCATTTCCTCTCTCCTCCCATTTTGAAACCAAAGATTAAGCGATTATGTTTTCCATTGGCTAATTAATAATGTTTATTAGTGGCAGTTCTACTCAGAAACGTAGAGTTCTGTAACCAAATTTGTTAGCATATTTCCTTTATAGAGCCTTTTGGCTATAATCTCATAACGGGGCCAGTCTAGAGGCCTTAGTGATCATAATAATCCTAGTTAGTGGTGTTTCTAAGATAAGAGCATTTGATATTAAATCTACTTCTAGAACTTATGAGCTTGTCTTTTTTGAAGCATTTAATATTAAATCTACTTCTAGAACATATGAGCTAGTTTTTTTGAAGCTTTTGATGGTAAAGCTAGTTCTAGACTAGGAATACTAATGTGTAGTACCATATTGCATCAAGAACGTGTAGGAAACTACTCCAGGTTGGTTTCTCTATTGAGAGAAATAATCACATCAATTGAAGGAACCTGGCATCTTTTTCACTCTAGACCATGAAACTTGTTTTGGTCTTGGTGATGCTTTCACTCTTTTAAATTTTAAGACTTCGTTAAACTTTTACGCCTTTAATGGCATTTTTTTTTGGCTAGGATTGAGAGTAGATTGAGTCTCGTGTTTGTCAGTTGGCACATAGGTGATCTTATATGCTGATATATGAAAGGACTTTGATCAAACAGAGATTTGTATTCTCACGTTTTTGTTCTTTGTGTAGCTCTCATTACCATTTTGAATTTTTATATAGGGTTACATACTCACATGTATACGAGTTGAAATTAGTTAAACTAAGTTTTGATGGGATATCTTAAATGCTAGTATAAGTTCCTCTGATCAAACAGACTCATTTGCATGTGTTTCTAAAGAACTTGTGTTATTCTTCTCATTTCTCTGGATTTATTTCATGGTAATGTTTTTTACATGCATCTTACAATATTTTATATAGGAATAAGAAATGAGAAAATACATCTCCCTCTCTTGTATCATATGTTGGTCTGGAAAACAGAGTTGTCCTTCGAGATAGTTGAATTGAATGCTTGCAGAATTCAGACCTGCTAACTCTTAAGAACAAAAGGCATATCATAAATCGTTATCTGAGTCTTGTATTCTATATGGTAGAACTATTAACAGTTGGTTCTTCATACTGACTTGATGGTTCTGCAGGCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</genome_strand>
        <mrna_strand>CTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCA..................................................................................................................................GTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCG................................................................................................GACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAG.....................................................................................................................................GTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ZIedsL/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327055" ref_strand="+" ref_description="SGN-U327055        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G11560.1 | Symbol: None | PQQ enzyme repeat-containing protein, contains Pfam profile PF01011: PQQ enzyme repeat | chr5:3709482-3714042 REVERSE | Aliases: F15N18.150, F15N18_150 (evalue: 7e-90, score=326) genbank/nr: gi|7573413|emb|CAB87716.1| putative protein [Arabidopsis thaliana] (evalue: 5e-88, score=326)">
      <seq>actcctgatgatgtagcagcggttcagagaataatgttacaaagtgctgagaaaagtaagatgacgcgagaccacaatggatttaggaagctactcattgtacttacacgagcagggaaactttttgcacttcacacaggtgatggccgaattgtttggtctcgactactgaatgctttccataaatcaggaacttgtgaaagtccaagggggatcaagttacatcagtggcaggtgccgcatcatcatgcattagatgagaacccatcagtccttgtagttggaacatgtggacataattcagatgcgtctggtattctctcctttgttgatgcatacaaaggagaggagcttaattacttagctcctgttcattccattacgcaaattattcctctgccatttactgattcaactgagcagcgtctacatctaataatagattctgaggggtacggccacctgtaccctagaactcctgaggcagttgacatttttcaaaaggagttgggaaacatatattggtattcagttgatataaacaataatctcttaaaggggcatgtggtgaagaaaaattgcaaagaggagatatctgatgactactgttttgagtccattgacctttggtctgttataatcccctcagattcagaaaagatcattgcaacttcaaccagaaaatttagtgaggttgttcacacgcaagctaaagttaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-36nqh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0017M14.1" temp_strand="-" temp_description="C09SLe0017M14.1  AC216721.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0017M14 upload_account_name:spain (1 - 103916)">
        <position start="99182" stop="97710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98882" g_stop="98190" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98189" i_stop="98040" i_length="150">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98039" g_stop="98010" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="723" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.1" gen_strand="-" ref_id="SGN-U327055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98882" e_stop="98190"/>
          <exon e_start="98039" e_stop="98010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTGATGATGTAGCAGCAGTTCAGAGAATAAGGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAGGTAATCCTTTGCTCTTCTTTAAAAGATCATTGTAACTTGAGCAAAGAAAAATTAAGAGAGCTGTCTTGGTAAAAGTTACCACAGATTGTGCTGCTGAACCTTGAGATTGTAGTTTTATATTCTTATTTTTTCTGCTTCTCGTTTTTTCAGGTTGTTCACACGCAAGCTAAAGTTAACGCT</genome_strand>
        <mrna_strand>ACTCCTGATGATGTAGCAGCGGTTCAGAGAATAATGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCATTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAG......................................................................................................................................................GTTGTTCACACGCAAGCTAAAGTTAACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9763" PGL_stop="9256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9763" e_stop="9256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="9763" e_stop="9256" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9763" stop="9256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346269" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA</gDNA_template>
            <first_frame> K  W  L  R  D  E  N  F  E  D  R  V  R  G  R  G  M  I  I  R  G  W  A  P  Q  V  L  I  L  S  H  P  S  V  G  G  F  L  T  H  C  G  W  N  S  A  L  E  G  I  S  R  G  V  P  M  T  T  F  P  M  F  A  E  Q  F  Y  N  E  K  F  I  V  N  I  L  K  T  G  V  G  V  G  V  E  V  S  T  T  S  W  N  E  E  K  S  G  V  L  V  S  K  D  E  V  K  R  A  I  N  Q  L  M  D  Q  G  L  E  G  E  E  R  R  K  I  A  K  D  L  S  H  I  S  K  K  A  I  Q  E  E  G  S  S  Y  L  N  I  K  L  L  I  E  D  V  M  H  V  L  K  N  K  E  E  I  E  *  I  L  K  </first_frame>
            <second_frame>  N  G  *  E  M  K  I  L  K  I  G  L  E  E  E  G  *  L  L  E  V  G  P  H  K  S  *  Y  Y  L  I  L  P  S  E  D  S  *  H  T  V  D  G  T  Q  H  *  K  G  S  L  V  A  C  Q  *  L  L  F  L  C  L  P  N  N  F  T  M  R  S  L  S  *  I  S  *  R  L  E  L  E  L  V  L  K  *  V  L  P  L  G  M  K  R  R  V  E  Y  W  L  A  K  M  K  S  K  E  Q  *  I  N  *  W  I  K  D  *  R  V  K  K  E  E  K  *  Q  R  I  C  H  I  F  Q  R  R  L  Y  K  K  K  V  L  H  T  *  I  S  N  Y  *  L  K  M  S  C  M  Y  S  K  I  K  R  K  L  N  R  F  *  R </second_frame>
            <third_frame>   M  A  K  R  *  K  F  *  R  *  G  *  R  K  R  D  D  Y  *  R  L  G  P  T  S  P  N  I  I  S  S  F  R  R  R  I  L  N  T  L  W  M  E  L  S  T  R  R  D  L  S  W  R  A  N  D  Y  F  S  Y  V  C  R  T  I  L  Q  *  E  V  Y  R  K  Y  L  E  D  W  S  W  S  W  C  *  S  E  Y  Y  L  L  E  *  R  E  E  W  S  I  G  *  Q  R  *  S  Q  K  S  N  K  S  I  N  G  S  R  I  R  G  *  R  K  K  K  N  S  K  G  F  V  T  Y  F  K  E  G  Y  T  R  R  R  F  F  I  L  E  Y  Q  I  I  D  *  R  C  H  A  C  T  Q  K  *  R  G  N  *  I  D  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9763" stop="9266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLRDENFEDRVRGRGMIIRGWAPQVLILSHPSVGGFLTHCGWNSALEGISRGVPMTTFPMFAEQFYNEKFIVNILKTGVGVGVEVSTTSWNEEKSGVLVSKDEVKRAINQLMDQGLEGEERRKIAKDLSHISKKAIQEEGSSYLNIKLLIEDVMHVLKNKEEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28617" PGL_stop="28174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28617" e_stop="28174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="28617" e_stop="28174" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28617" stop="28174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAATTTTGATAAAAGAATCACATATACCCCTAAATAAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCGTTAAATAAAAGGTATATGTGAGCCATTTTGTAACGATAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGAGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  I  L  I  K  E  S  H  I  P  L  N  K  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  I  K  G  I  C  E  P  F  C  N  D  R  G  I  C  E  P  F  V  *  R  *  E  H  I  *  A  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  Q </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  K  F  F  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  F  *  *  K  N  H  I  Y  P  *  I  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  I  S  V  K  *  K  V  Y  V  S  H  F  V  T  I  G  V  Y  V  S  R  L  Y  N  G  K  S  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  *  M  T  K  L  R  G  I  S  D  P  F  P   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  T  Y  T  P  K  *  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  P  L  N  K  R  Y  M  *  A  I  L  *  R  *  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30564" PGL_stop="30078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30564" e_stop="30078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30564" e_stop="30078" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30564" stop="30078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAC</gDNA_template>
            <first_frame> *  L  N  Q  T  L  *  V  *  F  S  L  F  F  V  I  F  V  R  W  M  K  R  K  N  Y  *  V  N  R  K  E  S  V  R  N  D  G  L  G  D  G  I  R  W  E  L  L  S  F  M  K  I  L  V  L  I  S  D  H  E  D  I  N  L  D  *  S  H  G  V  R  *  L  R  A  T  S  I  S  F  G  I  *  V  S  *  *  A  L  S  L  Y  I  *  E  F  K  F  M  V  K  K  T  S  I  L  C  *  L  F  S  P  L  L  I  I  S  Y  F  S  I  F  L  V  F  V  S  Y  K  *  L  M  N  E  C  F  D  V  L  C  L  I  W  P  E  *  *  W  F  *  *  C  I  N  A  W  V  C  F  L  I  </first_frame>
            <second_frame>  N  L  I  K  P  S  K  C  S  F  L  C  F  L  *  F  S  F  D  G  *  R  G  R  T  T  E  *  T  E  K  K  A  S  E  M  M  V  L  V  M  V  L  D  G  N  Y  Y  H  S  *  K  Y  *  S  *  L  V  I  M  K  I  L  I  L  I  S  P  M  V  *  G  N  *  G  Q  L  L  Y  P  L  A  F  E  S  L  D  R  L  Y  L  S  I  Y  K  N  L  N  L  W  *  K  R  L  A  F  Y  A  N  Y  L  V  L  Y  L  L  F  L  I  S  V  F  F  L  C  L  *  A  T  N  S  *  *  M  S  V  L  M  Y  Y  A  *  Y  G  Q  N  N  N  G  F  S  D  V  L  M  L  G  C  V  F  *  Y </second_frame>
            <third_frame>   T  *  S  N  P  L  S  V  V  F  F  V  F  C  N  F  R  S  M  D  E  E  E  E  L  L  S  K  Q  K  R  K  R  Q  K  *  W  S  W  *  W  Y  *  M  G  T  T  I  I  H  E  N  I  S  L  D  *  *  S  *  R  Y  *  S  *  L  V  P  W  C  K  V  I  K  G  N  F  Y  I  L  W  H  L  S  L  L  I  G  S  I  S  L  Y  I  R  I  *  I  Y  G  K  K  D  *  H  F  M  L  I  I  *  S  F  T  Y  Y  F  L  F  Q  Y  F  S  C  V  C  K  L  Q  I  V  N  E  *  V  F  *  C  I  M  P  N  M  A  R  I  I  M  V  L  V  M  Y  *  C  L  G  V  F  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34661" PGL_stop="32891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34661" e_stop="34536"/>
            <exon e_start="34264" e_stop="34134"/>
            <exon e_start="33553" e_stop="32891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34661" e_stop="34536" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.946">
            <gDNA_intron_boundary i_start="34535" i_stop="34265" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34264" e_stop="34134" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.968">
            <gDNA_intron_boundary i_start="34133" i_stop="33554" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="33553" e_stop="32891" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34661" stop="34536"/>
              <exon start="34264" stop="34134"/>
              <exon start="33553" stop="32891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAG : GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACG : GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTCTAGCACATATATTACCATTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAGAAAGTACACACTAACAAAAGTGTGATATTATTCTCTATGTATAGTAAAACAACACAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTCTTCAAGATTA</gDNA_template>
            <first_frame> Q  N  D  T  P  K  S  N  N  K  Y  T  N  F  N  R  A  P  Q  K  L  S  Q  S  Q  E  L  W  V  D  R  L  H  S  D  R  K  S  S  E  S  E  :  G  E  N  S  S  S  D  G  I  T  S  S  V  V  V  D  Y  L  A  R  I  Q  L  L  E  N  K  L  G  E  A  L  E  A  N  K  K  Y  K  I  Q  L  Q  R :   F  K  T  E  E  R  R  G  H  S  P  A  S  K  K  S  E  G  D  N  E  M  V  K  R  F  E  H  T  K  A  L  L  E  A  E  L  K  D  I  R  E  R  Y  F  Q  M  S  L  K  Y  A  E  V  E  A  Q  R  E  D  L  V  M  K  L  K  A  V  K  S  G  K  R  W  F  S  *  I  T  T  S  I  L  A  E  H  S  S  *  P  *  V  N  Q  S  T  F  S  H  Y  V  A  R  T  L  Q  Q  M  S  P  D  T  R  *  I  F  Q  K  Y  Y  V  Y  F  L  R  I  D  L  T  Q  A  Q  Q  H  F  C  R  V  T  S  Y  I  V  *  H  I  Y  Y  H  C  N  L  S  S  K  *  L  K  A  R  Y  R  Q  *  K  I  R  T  K  *  D  C  Y  I  Q  W  Q  G  I  V  D  I  F  R  Q  E  S  T  H  *  Q  K  C  D  I  I  L  Y  V  *  *  N  N  T  V  T  K  L  E  I  L  S  T  V  F  N  R  L  Q  D   </first_frame>
            <second_frame>  R  M  I  L  Q  R  A  T  T  S  T  L  T  S  I  E  H  L  K  S  L  V  S  P  K  N  F  G  W  I  D  F  I  Q  I  A  K  V  V  N  Q  R :   V  K  I  V  P  P  T  E  L  L  L  L  L  *  W  I  T  W  L  E  Y  N  C  L  R  T  S  L  V  K  H  *  K  P  I  R  S  T  K  F  S  F  N   : G  S  R  L  R  N  V  E  D  I  H  R  L  P  R  N  Q  K  G  T  T  K  W  *  K  G  S  N  I  Q  R  L  Y  *  K  Q  N  *  K  T  F  E  N  D  T  F  K  *  V  L  S  M  L  K  *  K  H  K  E  R  I  L  L  *  N  *  R  Q  L  R  A  E  R  D  G  S  L  E  S  R  L  A  F  S  R  S  I  H  P  N  L  R  *  T  N  P  H  F  H  I  M  L  L  G  L  F  N  K  C  L  L  I  H  V  R  S  S  K  S  T  T  Y  I  F  *  E  S  I  *  H  R  R  N  N  I  F  A  E  L  R  A  I  *  S  S  T  Y  I  T  I  V  I  Y  P  Q  N  N  *  K  Q  D  I  D  N  K  K  L  E  P  N  K  I  V  I  Y  N  G  K  A  *  W  I  F  L  D  K  K  V  H  T  N  K  S  V  I  L  F  S  M  Y  S  K  T  T  Q  *  Q  S  *  K  F  Y  Q  R  Y  S  T  V  F  K  I  </second_frame>
            <third_frame>   E  *  Y  S  K  E  Q  Q  Q  V  H  *  L  Q  *  S  T  S  K  A  *  S  V  P  R  T  L  G  G  S  T  S  F  R  S  Q  K  *  *  I  R   : G  *  K  *  F  L  R  R  N  Y  F  F  C  C  S  G  L  L  G  *  N  T  I  A  *  E  Q  A  W  *  S  I  R  S  Q  *  E  V  Q  N  S  A  S  T  :  V  Q  D  *  G  T  *  R  T  F  T  G  F  Q  E  I  R  R  G  Q  R  N  G  E  K  V  R  T  Y  K  G  F  T  R  S  R  T  K  R  H  S  R  T  I  L  S  N  E  S  *  V  C  *  S  R  S  T  K  R  G  S  C  Y  E  T  E  G  S  *  E  R  K  E  M  V  L  L  N  H  D  *  H  S  R  G  A  F  I  L  T  L  G  K  P  I  H  I  F  T  L  C  C  S  D  S  S  T  N  V  S  *  Y  T  L  D  L  P  K  V  L  R  I  F  F  E  N  R  S  N  T  G  A  T  T  F  L  Q  S  Y  E  L  Y  S  L  A  H  I  L  P  L  *  F  I  L  K  I  T  K  S  K  I  *  T  I  K  N  *  N  Q  I  R  L  L  Y  T  M  A  R  H  S  G  Y  F  *  T  R  K  Y  T  L  T  K  V  *  Y  Y  S  L  C  I  V  K  Q  H  S  D  K  V  R  N  F  I  N  G  I  Q  P  S  S  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34661" stop="34536"/>
                    <exon start="34264" stop="34134"/>
                    <exon start="33553" stop="33322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNDTPKSNNKYTNFNRAPQKLSQSQELWVDRLHSDRKSSESEGENSSSDGITSSVVVDYLARIQLLENKLGEALEANKKYKIQLQRFKTEERRGHSPASKKSEGDNEMVKRFEHTKALLEAELKDIRERYFQMSLKYAEVEAQREDLVMKLKAVKSGKRWFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49441" PGL_stop="50081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49441" e_stop="50081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49441" e_stop="50081" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49441" stop="50081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCT</gDNA_template>
            <first_frame> I  P  T  M  *  F  S  Q  N  Q  N  T  Y  F  P  L  Q  H  L  Q  K  Y  Q  L  I  V  V  L  K  F  S  Y  H  K  K  N  L  Y  T  L  F  S  T  K  N  V  T  K  T  L  F  L  L  W  H  H  H  Q  L  I  N  L  M  M  N  F  T  L  T  L  P  L  Q  M  M  I  S  S  L  R  R  S  I  N  V  T  F  Q  V  G  K  C  L  V  Y  G  L  D  *  L  L  V  C  P  H  I  T  *  L  V  A  *  L  I  L  A  C  H  G  G  K  V  L  Q  L  L  Y  *  L  I  *  *  L  Y  Y  H  L  Y  *  *  V  N  Q  A  Q  N  L  A  Y  H  F  L  F  *  L  D  H  H  L  A  L  E  V  H  I  F  L  H  Y  L  E  L  *  L  V  V  V  G  M  V  L  K  H  G  L  V  V  K  Q  F  S  C  C  Y  Q  K  L  L  R  I  H  I  C  H  N  Q  Y  L  G  L  A  H  H   </first_frame>
            <second_frame>  S  P  P  C  N  F  H  K  T  K  T  H  T  F  P  Y  N  I  F  K  N  T  N  *  *  *  Y  *  N  S  H  I  T  K  K  T  C  T  H  F  F  Q  Q  K  M  *  Q  K  H  Y  F  S  Y  G  I  I  I  N  *  S  I  *  *  *  I  S  P  *  P  Y  P  Y  K  *  *  S  Q  A  Y  V  D  R  S  T  *  L  F  R  L  G  N  V  *  S  M  D  W  T  S  C  W  C  A  L  I  L  P  S  W  *  P  S  *  S  W  H  V  M  V  A  R  Y  C  N  C  C  I  S  *  F  N  N  F  T  T  T  C  I  N  R  S  T  R  H  K  I  W  H  I  I  S  C  F  S  *  I  I  I  W  H  *  R  C  T  Y  S  Y  T  T  *  S  F  S  W  L  W  L  V  W  Y  *  N  M  D  W  W  *  S  N  F  L  V  V  T  K  S  C  *  G  F  T  F  V  T  I  N  I  L  A  W  H  I  T  </second_frame>
            <third_frame>   P  H  H  V  I  F  T  K  P  K  H  I  L  S  L  T  T  S  S  K  I  P  T  N  S  S  T  K  I  L  I  S  Q  K  K  L  V  H  T  F  F  N  K  K  C  N  K  N  I  I  S  P  M  A  S  S  S  I  N  Q  F  D  D  E  F  H  P  D  P  T  L  T  N  D  D  L  K  P  T  S  I  D  Q  R  N  F  S  G  W  E  M  S  S  L  W  I  G  L  V  V  G  V  P  S  Y  Y  L  A  G  S  L  V  D  L  G  M  S  W  W  Q  G  I  A  I  V  V  L  A  N  L  I  T  L  L  P  L  V  L  I  G  Q  P  G  T  K  F  G  I  S  F  P  V  L  A  R  S  S  F  G  I  R  G  A  H  I  P  T  L  L  R  A  L  V  G  C  G  W  Y  G  I  E  T  W  I  G  G  E  A  I  F  L  L  L  P  K  V  V  K  D  S  H  L  S  Q  S  I  S  W  L  G  T  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49443" stop="50081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHHVIFTKPKHILSLTTSSKIPTNSSTKILISQKKLVHTFFNKKCNKNIISPMASSSINQFDDEFHPDPTLTNDDLKPTSIDQRNFSGWEMSSLWIGLVVGVPSYYLAGSLVDLGMSWWQGIAIVVLANLITLLPLVLIGQPGTKFGISFPVLARSSFGIRGAHIPTLLRALVGCGWYGIETWIGGEAIFLLLPKVVKDSHLSQSISWLGTSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="57931" PGL_stop="59688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57931" e_stop="59688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="57931" e_stop="59688" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57931" stop="58643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58451" stop="59109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58520" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58923" stop="59253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59130" stop="59688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCTGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCACACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGACCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCCCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGAACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  *  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  C  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  I  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  L  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  K  N  G  A  S  T  R  F  K  I  N  T  E  V  N  N  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  C  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  E  I  T  N  R  K  I  T  C  D  D  S  I  *  C  L  C  F  *  P  P  R  E  S  V  T  M  G  P  H  T  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  P  T  V  L  V  T  T  I  T  S  T  T  A  S  P  R  M  T  T  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  S  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  E  V  L  T  G  L  R  W  N  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  N  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  R  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  V  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  L  *  S  M  H  I  Q  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  K  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  T  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  K  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  T  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  V  S  P  H  P  *  H  S  L  G  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  T  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  T  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  A  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  L  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  H  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  C  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  C  S  L  C  T  S  K  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  K  V  G  P  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  *  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  V  *  K  H  E  S  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  *  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  L  L  L  T  A  Q  G  K  R  N  N  G  P  S  H  L  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  D  R  F  G  D  H  H  Y  L  D  H  R  V  P  Q  N  D  D  L  F  H  N  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  Q  S  P  H  I  H  N  T  L  W  V  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  E  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58096" stop="58434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHCQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPIHQTHERSRGIRKTKRHYYKFVMPIPSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59362" stop="59616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITPTVLVTTITSTTASPRMTTSSITTSTSNIWRSVTLFWTIPLNVSSLPTSITLSGFKHRSLREVLTGLRWNPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58658" stop="58903"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIKMGRVPGSRSIQKSITLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59947" PGL_stop="58503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59947" e_stop="59761"/>
            <exon e_start="59016" e_stop="58503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="59947" e_stop="59761" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59760" i_stop="59017" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="59016" e_stop="58503" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59947" stop="59761"/>
              <exon start="59016" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCACATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTTCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTCTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGTTATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTTGGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  T  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  Q  F  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  S  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  G  V  K  G  P  T  L  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  L  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  H  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  S  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  V  A  A  T  A  K  S  S  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  R  D  V  F  P  A  D  L  P  G  M  P  P  D  R  V  I  D  F  C  I  D  L  E  P  G  T  R  P  I  F  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  *  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  W  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  R  F  Q  P  Y  R  *  R  L  Q  R  N  L  L  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  Q  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  G  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  L  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59946" stop="59761"/>
                    <exon start="59016" stop="58609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAHEAKFRALSRYATQLCFSSQERIRRFVKGLRSELQISALQVAATAKSSQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFRDVFPADLPGMPPDRVIDFCIDLEPGTRPIFIPPYRMAPAELRELKAQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60574" PGL_stop="60021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60574" e_stop="60021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="60574" e_stop="60021" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60574" stop="60021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGAAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGATTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  E  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  F  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  F  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  K  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  D  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  I  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  F  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  M  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60573" stop="60022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEKVVREGEEGENEQVQNEDLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="60209" PGL_stop="60641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60209" e_stop="60641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="60209" e_stop="60641" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60209" stop="60641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTTCTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCTCTTGCCGTTGCTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  K  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  F  S  V  G  G  G  V  T  A  L  A  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  W  P  L  A  V  A  L  </first_frame>
            <second_frame>  P  *  K  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  N  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  L  L  S  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  F  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  E  N  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  I  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  M  A  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60364" stop="60639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQILILHLFILPFLTLSYYFLSRWRSHRPSIRWARCLSSSSRGRPPTTSTMASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60443" stop="60640"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGKSSFCTCSFSPSSPSLTTFSVGGGVTALASDGLGVCPLPLEDVLPRPLPWPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="64815" PGL_stop="62747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64815" e_stop="64701"/>
            <exon e_start="64594" e_stop="64585"/>
            <exon e_start="64356" e_stop="64318"/>
            <exon e_start="64086" e_stop="64075"/>
            <exon e_start="63307" e_stop="62747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.467"/>
          <exon-intron don_prob="0.454" acc_prob="0.000" e_score="0.900"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.744"/>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.467">
            <gDNA_exon_boundary e_start="64815" e_stop="64701" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64700" i_stop="64595" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="64594" e_stop="64585" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.454" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64584" i_stop="64357" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.744">
            <gDNA_exon_boundary e_start="64356" e_stop="64318" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64317" i_stop="64087" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="64086" e_stop="64075" e_length="12"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64074" i_stop="63308" i_length="767"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="63307" e_stop="62747" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64815" stop="64701"/>
              <exon start="64594" stop="64585"/>
              <exon start="64356" stop="64318"/>
              <exon start="64086" stop="64075"/>
              <exon start="63307" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315792" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAG : TTTATAATAG : TGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGA : AGTAATAATAAA : TGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATAGAGA</gDNA_template>
            <first_frame> I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  *  L  N  L   : V  Y  N  S :   V  K  K  *  *  K  I  K  N  I  *  Y  E :   V  I  I  N :   V  T  I  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  G  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  Y  K  V  S  E  F  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  K  L  V  G  Y  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  L  N  K  K  K  K  R  T  E  R  E  R  R  R  I  D  R   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  N  *  I  *  :  F  I  I   : V  L  K  S  N  K  K  L  K  I  F  N  M   : K  *  *  *   : M  *  R  S  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  *  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  R  A  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  I  K  L  V  S  L  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  A  N  *  G  K  R  K  R  V  *  I  R  K  R  K  E  Q  K  E  R  E  G  E  S  I  E  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  I  K  F  S :   L  *  *  :  C  *  K  V  I  K  N  *  K  Y  L  I  *  :  S  N  N  K  :  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  V  E  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  G  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  *  S  *  *  V  Y  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  E  *  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  E  *  E  K  E  K  N  R  K  R  E  K  E  N  R  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64086" stop="64075"/>
                    <exon start="63307" stop="63068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNKCNDLFSRFEQQILFLEKQVETTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHGLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65008" PGL_stop="69301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65008" e_stop="65323"/>
            <exon e_start="65964" e_stop="66211"/>
            <exon e_start="67289" e_stop="67643"/>
            <exon e_start="68484" e_stop="69301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65008" e_stop="65323" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65324" i_stop="65963" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65964" e_stop="66211" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66212" i_stop="67288" i_length="1077"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67289" e_stop="67643" e_length="355"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67644" i_stop="68483" i_length="840"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="68484" e_stop="69301" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65008" stop="65323"/>
              <exon start="65964" stop="66211"/>
              <exon start="67289" stop="67643"/>
              <exon start="68484" stop="69301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG : TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG : GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG : ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAATTATAC</gDNA_template>
            <first_frame> L  L  F  N  F  Y  F  *  K  N  V  S  I  I  G  K  I  *  *  K  I  E  E  *  N  *  R  L  S  *  R  S  K  V  F  A  *  K  W  N  S  K  S  S  K  E  I  H  F  S  Y  F  R  K  T  K  L  L  Y  Y  K  *  K  S  T  S  C  *  Q  T  Q  S  *  V  A  C  H  R  F  F  S  T  L  W  S  *  *  S  S  S  S  *  F  T  L  L  C  L  *  K  L  W  I  F  S   : V  D  K  P  W  D  S  R  R  G  N  K  K  Y  G  G  C  W  R  K  V  F  *  S  S  I  S  R  K  G  K  V  H  D  K  R  H  D  N  T  S  *  I  W  D  K  F  *  S  N  K  R  W  C  L  L  L  E  G  L  S  Q  A  C  L  *  P  S  S  S  S  P  S  S  L  A  F  F  S  F  L  F  *  :  G  N  G  S  Y  I  L  *  R  D  Q  N  L  I  Y  K  V  S  G  S  H  P  R  K  S  W  N  *  R  C  N  K  K  Q  D  T  T  K  *  *  R  N  N  V  K  R  I  *  R  W  K  P  A  N  G  C  *  F  L  S  T  L  S  *  S  *  F  D  T  W  N  A  T  S  F  *  L  W  I  F  N  S  S  T  P  R  *  S  *  R  F  T  S  Q  V  Q  *  *  L  G  H  Y  S  T  H  P  *  C  F  C  G  Q  C  W  *  P  P  R   : D  I  *  Q  W  K  I  Q  K  C  V  T  *  S  S  C  E  L  F  K  V  K  N  F  S  G  F  F  A  *  S  S  I  Q  *  H  N  K  A  I  T  *  I  N  *  *  N  K  S  K  S  L  Q  R  H  K  F  C  C  I  S  *  I  L  K  I  L  *  F  H  *  *  K  F  P  *  D  K  K  V  N  M  K  K  K  M  K  S  N  T  T  R  Q  V  *  F  Y  L  N  L  Y  *  K  K  K  R  S  Y  S  P  V  T  I  I  F  I  L  N  S  I  N  S  L  N  M  M  V  A  L  L  D  D  *  L  I  T  R  P  M  K  R  L  S  R  I  C  I  L  I  K  E  N  L  L  K  F  *  Q  S  T  F  Q  *  N  V  L  F  N  N  R  S  P  D  Q  *  R  D  S  L  E  C  A  F  *  *  K  R  I  C  *  N  F  D  N  R  P  F  G  R  M  Y  W  E  M  K  C  S  Q  R  I  R  R  I  W  T  S  F  V  Y  F  D  F  F  I  I  S  Y  Y  F  L  *  L  V  R  S  I  I  N  R  N  Y  W  F  G  I  *  F  I  S  S  *  P  H  I  C  I  E  I  I  I  N  V  Y  T  T  T  L  D  S  S  K  L  Y </first_frame>
            <second_frame>  F  F  S  I  F  I  F  K  K  M  S  P  S  L  A  K  S  S  E  K  L  K  N  E  I  E  D  Y  H  K  G  V  K  Y  L  H  E  S  G  I  Q  K  V  P  K  K  Y  I  F  P  I  S  E  R  P  N  C  Y  T  I  N  E  N  P  Q  V  A  S  K  H  N  L  K  L  P  V  I  D  F  S  Q  L  Y  G  P  N  R  A  Q  V  L  D  S  L  S  Y  A  C  E  N  Y  G  F  F  Q  :  L  T  N  H  G  I  P  E  E  V  I  K  N  M  V  D  V  G  G  R  F  F  D  L  P  L  V  E  R  E  K  Y  M  T  K  D  M  T  T  P  V  R  Y  G  T  S  F  N  Q  T  K  D  G  V  F  C  W  R  D  F  L  K  L  V  C  D  P  L  P  Q  V  L  P  H  W  P  S  S  P  S  Y  F  R :   E  M  A  V  T  Y  S  K  E  T  K  I  L  F  I  K  L  V  E  A  I  L  E  S  L  G  I  N  V  A  T  K  N  K  T  Q  Q  N  D  E  E  I  M  L  K  E  F  E  D  G  S  Q  L  M  A  V  N  F  Y  P  P  C  P  N  P  D  L  T  L  G  M  P  P  H  S  D  Y  G  F  L  T  L  L  L  Q  D  E  V  E  G  L  Q  V  K  S  N  D  D  W  V  T  I  Q  P  I  P  N  A  F  V  V  N  V  G  D  H  L  E  :  I  F  S  N  G  K  Y  K  S  V  L  H  R  V  L  V  N  S  L  K  S  R  I  S  V  A  S  L  H  S  L  P  F  N  S  I  I  K  P  S  P  K  L  I  S  E  T  N  P  S  L  Y  K  D  T  N  F  A  A  F  L  E  Y  L  K  S  C  D  S  T  N  K  S  F  L  E  T  R  R  L  T  *  K  K  K  *  N  R  T  L  P  D  K  F  D  F  I  *  I  F  I  E  K  K  K  E  V  I  H  P  S  L  *  Y  L  Y  *  I  P  S  I  H  *  T  *  W  L  R  S  W  M  I  N  *  S  P  D  Q  *  R  D  S  P  E  Y  A  F  *  *  K  K  I  C  *  N  F  D  N  R  P  F  N  R  M  Y  Y  L  I  I  D  H  Q  I  N  E  E  T  L  *  N  V  H  F  N  K  K  E  F  V  E  I  S  T  I  D  L  S  V  E  C  T  G  K  *  S  A  A  K  E  L  G  E  F  G  Q  V  L  F  I  L  T  F  S  L  L  V  T  I  F  C  N  W  L  D  Q  L  L  I  E  I  I  G  L  V  Y  S  S  Y  Q  V  N  H  I  F  V  L  R  L  L  *  T  Y  I  Q  Q  L  *  I  L  R  N  Y   </second_frame>
            <third_frame>   S  F  Q  F  L  F  L  K  K  C  L  H  H  W  Q  N  L  V  K  N  *  R  M  K  L  K  I  I  I  K  E  *  S  I  C  M  K  V  E  F  K  K  F  Q  R  N  T  F  F  L  F  Q  K  D  Q  I  V  I  L  *  M  K  I  H  K  L  L  A  N  T  I  L  S  C  L  S  *  I  F  L  N  S  M  V  L  I  E  L  K  F  L  I  H  S  P  M  P  V  K  T  M  D  F  F  S :   *  Q  T  M  G  F  Q  K  R  *  *  K  I  W  W  M  L  E  E  G  F  L  I  F  H  *  *  K  G  K  S  T  *  Q  K  T  *  Q  H  Q  L  D  M  G  Q  V  L  I  K  Q  K  M  V  S  F  V  G  G  T  F  S  S  L  F  V  T  L  F  L  K  S  F  L  I  G  L  L  L  L  L  I  L   : G  K  W  Q  L  H  T  L  K  R  P  K  S  Y  L  *  S  *  W  K  P  S  *  K  V  L  E  L  T  L  Q  Q  K  T  R  H  N  K  M  M  K  K  *  C  *  K  N  L  K  M  E  A  S  *  W  L  L  I  F  I  H  L  V  L  I  L  I  *  H  L  E  C  H  L  I  L  I  M  D  F  *  L  F  Y  S  K  M  K  L  K  V  Y  K  S  S  P  M  M  I  G  S  L  F  N  P  S  L  M  L  L  W  S  M  L  V  T  T  S  R :   Y  L  A  M  E  N  T  K  V  C  Y  I  E  F  L  *  T  L  *  S  Q  E  F  Q  W  L  L  C  I  V  F  H  S  I  A  *  *  S  H  H  L  N  *  L  V  K  Q  I  Q  V  F  T  K  T  Q  I  L  L  H  F  L  N  T  *  N  L  V  I  P  L  I  K  V  S  L  R  Q  E  G  *  H  E  K  K  N  E  I  E  H  Y  Q  T  S  L  I  L  S  E  S  L  L  K  K  K  K  K  L  F  T  R  H  Y  N  I  Y  T  K  F  H  Q  F  I  K  H  D  G  C  A  L  G  *  L  I  N  H  Q  T  N  E  E  T  L  Q  N  M  H  F  N  K  R  K  F  V  E  I  L  T  I  D  L  S  I  E  C  T  I  *  *  S  I  T  R  S  M  K  R  L  S  R  M  C  I  L  I  K  K  N  L  L  K  F  R  Q  S  T  F  R  *  N  V  L  G  N  E  V  Q  P  K  N  *  E  N  L  D  K  F  C  L  F  *  L  F  H  Y  *  L  L  F  F  V  I  G  *  I  N  Y  *  *  K  L  L  V  W  Y  I  V  H  I  K  L  T  T  Y  L  Y  *  D  Y  Y  K  R  I  Y  N  N  S  R  F  F  E  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65009" stop="65323"/>
                    <exon start="65964" stop="66211"/>
                    <exon start="67289" stop="67643"/>
                    <exon start="68484" stop="68729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSIFIFKKMSPSLAKSSEKLKNEIEDYHKGVKYLHESGIQKVPKKYIFPISERPNCYTINENPQVASKHNLKLPVIDFSQLYGPNRAQVLDSLSYACENYGFFQLTNHGIPEEVIKNMVDVGGRFFDLPLVEREKYMTKDMTTPVRYGTSFNQTKDGVFCWRDFLKLVCDPLPQVLPHWPSSPSYFREMAVTYSKETKILFIKLVEAILESLGINVATKNKTQQNDEEIMLKEFEDGSQLMAVNFYPPCPNPDLTLGMPPHSDYGFLTLLLQDEVEGLQVKSNDDWVTIQPIPNAFVVNVGDHLEIFSNGKYKSVLHRVLVNSLKSRISVASLHSLPFNSIIKPSPKLISETNPSLYKDTNFAAFLEYLKSCDSTNKSFLETRRLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="74824" PGL_stop="72280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74824" e_stop="74624"/>
            <exon e_start="74114" e_stop="73837"/>
            <exon e_start="72498" e_stop="72280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74824" e_stop="74624" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74623" i_stop="74115" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74114" e_stop="73837" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73836" i_stop="72499" i_length="1338"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="72498" e_stop="72280" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74824" stop="74624"/>
              <exon start="74114" stop="73837"/>
              <exon start="72498" stop="72280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG : GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC : TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAATTACGTGCAA</gDNA_template>
            <first_frame> F  E  Q  I  L  F  R  E  I  K  *  E  L  *  K  *  I  *  F  L  *  P  H  *  F  W  C  F  L  I  L  L  K  P  Q  M  E  W  M  L  C  I  F  L  A  K  F  F  A  K  I  V  L  K  D  G  M  N  G  L  M  V  P  K  P  S  K  :  V  A  S  Y  L  *  R  A  W  T  R  E  E  E  *  C  I  T  E  V  T  S  Q  M  K  L  E  F  S  I  *  L  L  T  K  L  V  M  A  K  Q  L  S  H  K  I  A  L  *  D  W  F  L  H  L  I  L  F  V  I  L  P  P  T  S  P  E  E  N  P  V  *  S  S  T  V  R  R  W  F  T  G  T  C  S  N  M  C  L  A  L  S  T :   T  Q  L  P  C  V  M  N  L  I  L  M  M  M  I  I  W  R  L  M  M  I  K  I  K  T  I  I  K  L  S  S  Y  F  *  F  F  L  L  L  M  F  V  F  N  F  P  F  C  K  W  K  M  T  I  Y  L  C  W  M  S  *  *  F  Y  F  V  L  L  I  T  C   </first_frame>
            <second_frame>  L  N  K  Y  Y  L  E  K  *  S  E  N  Y  E  N  E  Y  S  F  Y  S  L  I  N  F  G  V  F  *  F  Y  *  S  L  R  W  N  G  C  Y  A  Y  F  W  Q  S  S  L  P  R  L  Y  S  R  M  E  *  M  G  *  W  C  Q  S  H  Q  R :   *  H  R  I  S  D  V  P  G  R  E  K  K  S  D  V  L  R  K  *  P  H  R  *  S  W  N  F  R  F  D  C  *  P  N  L  S  W  Q  N  N  *  A  T  K  L  L  C  E  I  G  F  F  T  *  S  C  L  *  Y  C  H  R  L  R  R  R  K  I  R  C  K  A  P  P  S  D  G  G  L  P  G  L  A  Q  I  C  A  *  P  F  L   : L  H  N  S  H  V  *  *  T  *  Y  *  *  *  *  *  F  G  D  *  *  *  *  K  S  K  Q  L  L  N  *  V  L  I  F  N  F  F  F  F  *  C  L  C  L  I  S  H  F  V  N  G  K  *  Q  F  I  Y  V  G  *  V  D  D  F  I  L  Y  Y  *  L  R  A  </second_frame>
            <third_frame>   *  T  N  I  I  *  R  N  K  V  R  I  M  K  M  N  I  V  F  I  A  S  L  I  L  V  F  S  N  F  I  E  A  S  D  G  M  D  V  M  H  I  S  G  K  V  L  C  Q  D  C  T  Q  G  W  N  E  W  V  D  G  A  K  A  I  K   : G  S  I  V  S  L  T  C  L  D  E  R  R  R  V  M  Y  Y  G  S  D  L  T  D  E  A  G  I  F  D  L  I  V  N  Q  T  C  H  G  K  T  I  K  P  Q  N  C  F  V  R  L  V  S  S  P  D  P  V  C  N  I  A  T  D  F  A  G  G  K  S  G  V  K  L  H  R  P  T  V  V  Y  R  D  L  L  K  Y  V  L  S  P  F  Y  :  Y  T  T  P  M  C  D  E  P  N  I  N  D  D  D  N  L  E  T  N  D  D  K  N  Q  N  N  Y  *  I  K  F  L  F  L  I  F  S  S  S  N  V  C  V  *  F  P  I  L  *  M  E  N  D  N  L  S  M  L  D  E  L  M  I  L  F  C  T  I  N  Y  V  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74804" stop="74624"/>
                    <exon start="74114" stop="73837"/>
                    <exon start="72498" stop="72412"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKVRIMKMNIVFIASLILVFSNFIEASDGMDVMHISGKVLCQDCTQGWNEWVDGAKAIKGSIVSLTCLDERRRVMYYGSDLTDEAGIFDLIVNQTCHGKTIKPQNCFVRLVSSPDPVCNIATDFAGGKSGVKLHRPTVVYRDLLKYVLSPFYYTTPMCDEPNINDDDNLETNDDKNQNNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86952" PGL_stop="88243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86952" e_stop="87035"/>
            <exon e_start="87747" e_stop="87876"/>
            <exon e_start="87989" e_stop="88243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.892"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86952" e_stop="87035" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87036" i_stop="87746" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="0.892">
            <gDNA_exon_boundary e_start="87747" e_stop="87876" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="87877" i_stop="87988" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="87989" e_stop="88243" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86952" stop="87035"/>
              <exon start="87747" stop="87876"/>
              <exon start="87989" stop="88243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGG : CCTTTATTTTACAAAAGTGAGACTGGGAACTCCGCCAAGAGAATATAACGTGCAGATTGATACCGGCAGTGATATCCTGTGGGTCACCTGCAGTTCCTGTGACGATTGTCCTCGAACAAGTGGACTTGGG : GTTGAGCTCAACTTCTATGATGCTACAGTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCAGTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGTTTTTGGGTGG</gDNA_template>
            <first_frame> *  T  C  S  N  V  A  E  F  W  W  W  Y  C  *  F  S  C  C  W  F  F  *  P  L  S  C  R  :  P  L  F  Y  K  S  E  T  G  N  S  A  K  R  I  *  R  A  D  *  Y  R  Q  *  Y  P  V  G  H  L  Q  F  L  *  R  L  S  S  N  K  W  T  W   : G  *  A  Q  L  L  *  C  Y  S  L  I  N  C  L  S  Y  F  L  C  G  P  S  V  R  L  Y  S  S  N  Y  L  C  *  V  L  Y  R  N  Q  S  V  W  L  H  L  S  V  W  R  W  E  W  H  N  W  S  L  R  S  R  F  I  I  F  R  Y  S  P  G  N  L  V  D  C  Q  L  L  S  T  N  C  F  W  V  </first_frame>
            <second_frame>  R  H  A  R  M  L  Q  S  F  G  G  G  I  V  D  F  P  V  V  G  S  S  D  P  Y  L  V  G :   L  Y  F  T  K  V  R  L  G  T  P  P  R  E  Y  N  V  Q  I  D  T  G  S  D  I  L  W  V  T  C  S  S  C  D  D  C  P  R  T  S  G  L  G  :  V  E  L  N  F  Y  D  A  T  V  S  S  T  A  S  P  I  S  C  A  D  Q  V  C  A  S  I  V  Q  T  T  S  A  E  C  S  T  E  T  N  Q  C  G  Y  T  F  Q  Y  G  D  G  S  G  T  T  G  H  Y  V  A  D  L  L  Y  F  D  T  V  L  G  T  S  L  I  A  N  S  S  A  P  I  V  F  G  W </second_frame>
            <third_frame>   D  M  L  E  C  C  R  V  L  V  V  V  L  L  I  F  L  L  L  V  L  L  T  L  I  L  S   : A  F  I  L  Q  K  *  D  W  E  L  R  Q  E  N  I  T  C  R  L  I  P  A  V  I  S  C  G  S  P  A  V  P  V  T  I  V  L  E  Q  V  D  L  G :   L  S  S  T  S  M  M  L  Q  S  H  Q  L  P  L  L  F  L  V  R  T  K  C  A  P  L  *  F  K  L  P  L  L  S  A  L  Q  K  P  I  S  V  V  T  P  F  S  M  E  M  G  V  A  Q  L  V  I  T  *  P  I  Y  Y  I  S  I  Q  S  W  E  P  R  *  L  P  T  P  Q  H  Q  L  F  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86953" stop="87035"/>
                    <exon start="87747" stop="87876"/>
                    <exon start="87989" stop="88243"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHARMLQSFGGGIVDFPVVGSSDPYLVGLYFTKVRLGTPPREYNVQIDTGSDILWVTCSSCDDCPRTSGLGVELNFYDATVSSTASPISCADQVCASIVQTTSAECSTETNQCGYTFQYGDGSGTTGHYVADLLYFDTVLGTSLIANSSAPIVFGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90807" PGL_stop="94804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90807" e_stop="90880"/>
            <exon e_start="91001" e_stop="91097"/>
            <exon e_start="91241" e_stop="91304"/>
            <exon e_start="93912" e_stop="93983"/>
            <exon e_start="94117" e_stop="94804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90807" e_stop="90880" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.836">
            <gDNA_intron_boundary i_start="90881" i_stop="91000" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91001" e_stop="91097" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91098" i_stop="91240" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91241" e_stop="91304" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.698" acc_prob="0.956">
            <gDNA_intron_boundary i_start="91305" i_stop="93911" i_length="2607"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93912" e_stop="93983" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="93984" i_stop="94116" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94117" e_stop="94804" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90807" stop="90880"/>
              <exon start="91001" stop="91097"/>
              <exon start="91241" stop="91304"/>
              <exon start="93912" stop="93983"/>
              <exon start="94117" stop="94804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG : CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT : GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG : ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT : GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</gDNA_template>
            <first_frame> I  A  A  A  V  S  K  S  A  R  P  I  V  S  R  T  K  P  C  F  L  V  S  S  S :   I  A  E  I  F  P  P  V  S  L  N  F  D  G  G  A  S  M  A  L  R  P  A  D  Y  L  V  H  M  G  F  V  :  E  G  A  A  M  W  C  I  G  F  E  R  Q  D  Q  G  V  T  I  L  G   : D  L  V  L  K  D  K  I  I  V  Y  D  L  A  R  Q  R  I  G  W  T  D  Y  D   : C  S  S  S  V  N  V  S  I  T  S  G  K  G  E  F  I  N  A  G  Q  L  S  V  N  G  A  S  G  C  A  M  F  S  L  Q  H  T  R  A  S  A  L  L  L  L  L  V  L  V  I  G  S  P  F  L  T  *  F  S  F  D  F  L  W  *  F  I  S  F  A  N  *  Y  Y  C  S  W  L  V  I  V  S  F  L  S  S  P  P  S  L  D  S  T  F  I  L  T  S  K  D  L  S  F  R  C  C  L  C  P  D  L  H  M  Y  S  R  R  G  L  Y  V  H  S  D  L  D  L  D  V  Y  V  D  S  P  C  K  *  P  L  S  E  G  W  Q  S  E  D  A  *  L  D  A  R  R  E  Q  F  V  F  F  A  S  Y  W  S  S  C  C  R  S  I  I  F  F  F  L  S  K  I  G  F  S  V  C  T  L  H  Q  L  *  K  Q  F  A  V  V  S  I  A  A  C  *  K  F  S  V  L  I  C  L  I  G  S  V  T  H  F  R  M  F  L  Y  N  G  N  C  *  V   </first_frame>
            <second_frame>  *  L  L  L  F  Q  N  Q  Q  G  Q  S  S  H  E  Q  N  R  A  F  *  C  P  Q   : A  *  L  R  Y  F  P  Q  F  L  *  T  S  M  A  A  H  Q  W  L  *  D  Q  Q  T  T  L  C  I  W  A  L  L :   K  V  L  L  C  G  A  L  A  L  K  D  K  I  K  V  *  Q  F  *  E  :  I  L  F  *  K  T  K  S  L  C  M  T  W  L  G  K  G  L  D  G  Q  I  M  I  :  V  P  H  L  *  M  C  P  *  L  L  A  R  V  N  L  S  T  L  D  S  *  V  *  T  V  H  Q  A  V  R  C  S  V  C  S  T  R  E  L  V  L  F  C  Y  Y  W  S  L  *  L  V  P  H  F  *  L  N  S  V  L  T  S  F  G  N  L  *  A  S  P  T  N  I  T  V  V  G  S  *  L  C  H  F  *  V  P  H  R  A  *  T  L  P  S  F  *  P  Q  K  I  C  P  L  D  V  V  S  V  L  T  C  T  C  I  V  E  E  V  S  T  F  I  Q  T  S  I  *  M  S  M  L  T  R  H  V  N  N  L  L  V  K  D  G  K  V  K  M  H  D  *  T  R  D  E  S  N  L  C  F  L  L  H  I  G  Q  A  V  V  E  V  L  F  F  S  S  C  Q  K  L  V  S  L  Y  A  H  C  I  N  C  K  S  N  L  L  L  *  A  L  L  L  V  K  N  F  Q  F  L  F  V  L  L  A  V  *  H  I  L  E  C  F  C  I  M  E  I  V  E  Y  </second_frame>
            <third_frame>   S  C  C  C  F  K  I  S  K  A  N  R  L  T  N  K  T  V  L  F  S  V  L  K  :  H  S  *  D  I  S  P  S  F  F  E  L  R  W  R  R  I  N  G  F  K  T  S  R  L  P  C  A  Y  G  L  C   : *  R  C  C  Y  V  V  H  W  L  *  K  T  R  S  R  C  N  N  F  R  R :   S  C  S  E  R  Q  N  H  C  V  *  L  G  S  A  K  D  W  M  D  R  L  *  L :   F  L  I  C  E  C  V  H  N  F  W  Q  G  *  I  Y  Q  R  W  T  V  E  C  E  R  C  I  R  L  C  D  V  Q  S  A  A  H  E  S  *  C  S  S  A  T  I  G  P  C  D  W  F  P  I  F  N  L  I  Q  F  *  L  P  L  V  I  Y  K  L  R  Q  L  I  L  L  *  L  A  R  N  C  V  I  S  K  F  P  T  E  L  R  L  Y  L  H  S  D  L  K  R  F  V  L  *  M  L  S  L  S  *  L  A  H  V  *  *  K  R  S  L  R  S  F  R  P  R  F  R  C  L  C  *  L  A  M  *  I  T  S  *  *  R  M  A  K  *  R  C  M  T  R  R  E  T  R  A  I  C  V  F  C  F  I  L  V  K  L  L  *  K  Y  Y  F  F  L  L  V  K  N  W  F  L  C  M  H  I  A  S  I  V  K  A  I  C  C  C  K  H  C  C  L  L  K  I  F  S  S  Y  L  S  Y  W  Q  C  N  T  F  *  N  V  F  V  *  W  K  L  L  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90807" stop="90880"/>
                    <exon start="91001" stop="91097"/>
                    <exon start="91241" stop="91304"/>
                    <exon start="93912" stop="93983"/>
                    <exon start="94117" stop="94289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAAAVSKSARPIVSRTKPCFLVSSSIAEIFPPVSLNFDGGASMALRPADYLVHMGFVEGAAMWCIGFERQDQGVTILGDLVLKDKIIVYDLARQRIGWTDYDCSSSVNVSITSGKGEFINAGQLSVNGASGCAMFSLQHTRASALLLLLVLVIGSPFLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94335" stop="94529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYCSWLVIVSFLSSPPSLDSTFILTSKDLSFRCCLCPDLHMYSRRGLYVHSDLDLDVYVDSPCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="97895" PGL_stop="95077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97895" e_stop="97818"/>
            <exon e_start="97687" e_stop="97592"/>
            <exon e_start="97495" e_stop="97301"/>
            <exon e_start="97167" e_stop="97054"/>
            <exon e_start="95442" e_stop="95077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.827" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="97895" e_stop="97818" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.827">
            <gDNA_intron_boundary i_start="97817" i_stop="97688" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97687" e_stop="97592" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97591" i_stop="97496" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97495" e_stop="97301" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97300" i_stop="97168" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97167" e_stop="97054" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="97053" i_stop="95443" i_length="1611"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95442" e_stop="95077" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97895" stop="97818"/>
              <exon start="97687" stop="97592"/>
              <exon start="97495" stop="97301"/>
              <exon start="97167" stop="97054"/>
              <exon start="95442" stop="95077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCA : GTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCG : GACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAG : GTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAG : GCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</gDNA_template>
            <first_frame> V  Y  L  V  D  T  I  T  G  R  V  L  L  R  M  S  H  H  G  C  Q  G  P  V  H  A  :  V  F  S  E  N  W  V  V  Y  H  Y  F  N  L  R  A  H  R  Y  E  M  S  V  V  E  I  Y  D  Q  S  R  A  :  D  N  K  D  V  L  K  L  V  L  G  K  H  N  L  S  A  P  V  S  S  Y  S  R  P  E  I  M  T  K  S  Q  S  Y  F  F  T  H  S  V  K  A  V  A  V  T  S  T  A  K  G  I  T  S  K  Q  L  L  I  G  T  I  G  D  Q  :  V  L  A  L  D  K  R  F  L  D  P  R  R  S  L  N  P  T  Q  A  E  K  E  E  G  I  M  P  L  T  D  T  L  P  I  M  P  Q  :  A  F  V  T  H  A  L  K  V  E  G  L  R  S  I  I  A  I  P  A  K  L  E  S  T  T  L  V  F  A  H  G  V  D  L  F  F  T  R  L  A  P  S  K  T  Y  D  S  L  T  D  D  F  N  Y  A  L  L  L  L  T  I  V  A  L  V  I  S  I  F  V  T  W  I  W  S  E  R  K  D  L  Q  E  K  W  R  *  A  F  Q  S  T  K  W  R  R  V  Q  S  H  Y  T  S  V  V  V  L  F  *  Y  S  K  P  S  F  F  L  A  L  *  L  N </first_frame>
            <second_frame>  F  I  L  L  T  Q  *  L  A  E  C  C  S  V  C  L  I  M  A  A  R  D  L  Y  M  Q :   Y  L  V  K  I  G  S  S  I  T  T  S  T  C  V  H  T  D  M  R  C  L  L  L  R  S  T  T  S  L  A  R :   T  T  K  M  S  *  S  L  F  L  E  S  I  I  L  V  R  L  S  L  P  T  R  V  L  K  S  *  P  S  L  N  L  T  S  S  H  T  V  *  K  Q  *  Q  L  P  Q  Q  Q  K  A  S  L  P  N  N  C  L  L  A  Q  L  V  I  R :   F  W  H  L  T  S  V  F  L  I  L  V  D  H  *  T  L  L  K  L  K  R  R  K  G  L  C  L  L  L  I  H  C  Q  S  C  H  R :   L  S  S  H  T  P  L  K  W  K  A  L  E  A  *  *  L  Y  Q  Q  S  *  S  Q  P  P  S  S  L  P  T  E  L  I  S  F  S  H  G  L  L  L  Q  R  H  T  T  L  S  P  M  I  S  I  M  L  C  F  S  L  P  *  L  P  *  L  Y  Q  F  S  *  R  G  F  G  P  R  G  K  I  Y  R  R  S  G  G  E  P  F  N  Q  Q  S  G  G  E  S  K  A  I  T  L  Q  S  L  Y  C  F  S  T  Q  N  L  L  F  F  W  H  F  N  L   </second_frame>
            <third_frame>   L  S  C  *  H  N  N  W  P  S  A  A  P  Y  V  S  S  W  L  P  G  T  C  T  C   : S  I  *  *  K  L  G  R  L  S  L  L  Q  P  A  C  T  Q  I  *  D  V  C  C  *  D  L  R  P  V  S  R   : G  Q  Q  R  C  P  E  A  C  S  W  K  A  *  S  *  C  A  C  L  F  L  L  A  S  *  N  H  D  Q  V  S  I  L  L  L  H  T  Q  C  E  S  S  S  S  Y  L  N  S  K  R  H  H  F  Q  T  T  A  Y  W  H  N  W  *  S   : G  F  G  T  *  Q  A  F  S  *  S  S  S  I  T  E  P  Y  S  S  *  K  G  G  R  D  Y  A  S  Y  *  Y  I  A  N  H  A  T   : G  F  R  H  T  R  P  *  S  G  R  P  *  K  H  N  S  Y  T  S  K  A  R  V  N  H  P  R  L  C  P  R  S  *  S  L  F  H  T  A  C  S  F  K  D  I  R  L  S  H  R  *  F  Q  L  C  F  A  S  P  Y  H  S  C  P  S  Y  I  N  F  R  D  V  D  L  V  R  E  E  R  F  T  G  E  V  E  V  S  L  S  I  N  K  V  E  A  S  P  K  P  L  H  F  S  R  C  T  V  L  V  L  K  T  F  F  F  F  G  T  L  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97895" stop="97818"/>
                    <exon start="97687" stop="97592"/>
                    <exon start="97495" stop="97301"/>
                    <exon start="97167" stop="97054"/>
                    <exon start="95442" stop="95182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLVDTITGRVLLRMSHHGCQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEIYDQSRADNKDVLKLVLGKHNLSAPVSSYSRPEIMTKSQSYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSLNPTQAEKEEGIMPLTDTLPIMPQAFVTHALKVEGLRSIIAIPAKLESTTLVFAHGVDLFFTRLAPSKTYDSLTDDFNYALLLLTIVALVISIFVTWIWSERKDLQEKWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="98882" PGL_stop="98010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98882" e_stop="98190"/>
            <exon e_start="98039" e_stop="98010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="98882" e_stop="98190" e_length="693"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98189" i_stop="98040" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98039" e_stop="98010" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98882" stop="98190"/>
              <exon start="98039" stop="98010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCCTGATGATGTAGCAGCAGTTCAGAGAATAAGGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAG : GTTGTTCACACGCAAGCTAAAGTTAACGCT</gDNA_template>
            <first_frame> T  P  D  D  V  A  A  V  Q  R  I  R  L  Q  S  A  E  K  S  K  M  T  R  D  H  N  G  F  R  K  L  L  I  V  L  T  R  A  G  K  L  F  A  L  H  T  G  D  G  R  I  V  W  S  R  L  L  N  A  F  H  K  S  G  T  C  E  S  P  R  G  I  K  L  H  Q  W  Q  V  P  H  H  H  A  L  D  E  N  P  S  V  L  V  V  G  T  C  G  H  N  S  D  A  S  G  I  L  S  F  V  D  A  Y  K  G  E  E  L  N  Y  L  A  P  V  H  S  I  T  Q  I  I  P  L  P  F  T  D  S  T  E  Q  R  L  H  L  I  I  D  S  E  G  Y  G  H  L  Y  P  R  T  P  E  A  V  D  I  F  Q  K  E  L  G  N  I  Y  W  Y  S  V  D  I  N  N  N  L  L  K  G  H  V  V  K  K  N  C  K  E  E  I  S  D  D  Y  C  F  E  S  S  D  L  W  S  V  I  I  P  S  D  S  E  K  I  I  A  T  S  T  R  K  F  S  E  :  V  V  H  T  Q  A  K  V  N  A </first_frame>
            <second_frame>  L  L  M  M  *  Q  Q  F  R  E  *  G  Y  K  V  L  R  K  V  R  *  R  E  T  T  M  D  L  G  S  Y  S  L  Y  L  H  E  Q  G  N  F  L  H  F  T  Q  V  M  A  E  L  F  G  L  D  Y  *  M  L  S  I  N  Q  E  L  V  K  V  Q  G  G  S  S  Y  I  S  G  R  C  R  I  I  M  H  *  M  R  T  H  Q  S  L  *  L  E  H  V  D  I  I  Q  M  R  L  V  F  S  P  L  L  M  H  T  K  E  R  S  L  I  T  *  L  L  F  I  P  L  R  K  L  F  L  C  H  L  L  I  Q  L  S  S  V  Y  I  *  *  *  I  L  R  G  T  A  T  C  T  L  E  L  L  R  Q  L  T  F  F  K  R  S  W  E  T  Y  I  G  I  Q  L  I  *  T  I  I  S  *  R  G  M  W  *  R  K  I  A  K  R  R  Y  L  M  T  T  V  L  S  P  V  T  F  G  L  L  *  S  P  Q  I  Q  K  R  S  L  Q  L  Q  P  E  N  L  V  R :   L  F  T  R  K  L  K  L  T   </second_frame>
            <third_frame>   S  *  *  C  S  S  S  S  E  N  K  V  T  K  C  *  E  K  *  D  D  A  R  P  Q  W  I  *  E  A  T  H  C  T  Y  T  S  R  E  T  F  C  T  S  H  R  *  W  P  N  C  L  V  S  T  T  E  C  F  P  *  I  R  N  L  *  K  S  K  G  D  Q  V  T  S  V  A  G  A  A  S  S  C  I  R  *  E  P  I  S  P  C  S  W  N  M  W  T  *  F  R  C  V  W  Y  S  L  L  C  *  C  I  Q  R  R  G  A  *  L  L  S  S  C  S  F  H  Y  A  N  Y  S  S  A  I  Y  *  F  N  *  A  A  S  T  S  N  N  R  F  *  G  V  R  P  P  V  P  *  N  S  *  G  S  *  H  F  S  K  G  V  G  K  H  I  L  V  F  S  *  Y  K  Q  *  S  L  K  G  A  C  G  E  E  K  L  Q  R  G  D  I  *  *  L  L  F  *  V  Q  *  P  L  V  C  Y  N  P  L  R  F  R  K  D  H  C  N  F  N  Q  K  I  *  *   : G  C  S  H  A  S  *  S  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98882" stop="98190"/>
                    <exon start="98039" stop="98010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPDDVAAVQRIRLQSAEKSKMTRDHNGFRKLLIVLTRAGKLFALHTGDGRIVWSRLLNAFHKSGTCESPRGIKLHQWQVPHHHALDENPSVLVVGTCGHNSDASGILSFVDAYKGEELNYLAPVHSITQIIPLPFTDSTEQRLHLIIDSEGYGHLYPRTPEAVDIFQKELGNIYWYSVDINNNLLKGHVVKKNCKEEISDDYCFESSDLWSVIIPSDSEKIIATSTRKFSEVVHTQAKVNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 52 chains have been computed
$ 
$ memory statistics:
$ 63184 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 3159 bytes was the average size of a spliced alignment
$ 23904 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1494 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 67 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 22:08:18
-->
