<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 00:01:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329391" ref_strand="+" ref_description="SGN-E329391 [cTOD-2-H17]">
      <seq>actcctgatgatgtagcagcggttcagagaataatgttacaaagtgctgagaaaagtaagatgacgcgagaccacaatggatttaggaagctactcattgtacttacacgagcaggtaaactttttgcacttcacacaggtgatggtcgaattgtttggtctcgactactgaatgctttccataaatcaggaacttgtgaaagtccaagggggatcaagttacatcattggcaggtgccgcatcatcatgcattatatgagaacccatcagtccttgtagttggaacatgtggacataattcagatgcgtctggtattctctcctttgttgatgcatacaaaggagaggagcttaattactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="4735" stop="5697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5035" g_stop="5397" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E329391" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5035" e_stop="5397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTGATGATGTAGCAGCAGTTCAGAGAATAAGGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTA</genome_strand>
        <mrna_strand>ACTCCTGATGATGTAGCAGCGGTTCAGAGAATAATGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGTAAACTTTTTGCACTTCACACAGGTGATGGTCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCATTGGCAGGTGCCGCATCATCATGCATTATATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310487" ref_strand="+" ref_description="SGN-E310487 [cTOA-9-E9]">
      <seq>ctgagaaaagtaagatgacgcgagaccacaatggatttaggaagctactcattgtacttacacgagcagggaaactttttgcacttcacacaggtgatggccgaattgtttggtctcgactactgaatgctttccataaatcaggaacttgtgaaagtccaagggggatcaagttacatcagtggcaggtgccgcatcatcatgcattagatgagaacccatcagtccttgtagttggaacatgtggacataattcagatgcgtctggtattctctcctttgttgatgcatacaaaggagaggagcttaattacttagctcctgttcattccattacgcagatcattcctctgccatttactgattcaactgagcagcgtctacatctaataatacattctgaggggtacggccacctgtaccctagaactcctgaggcagttgacattgttcaaaaggagttgggaaacatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="4781" stop="5855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5081" g_stop="5555" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E310487" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5081" e_stop="5555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATA</genome_strand>
        <mrna_strand>CTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAGATCATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATACATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTGTTCAAAAGGAGTTGGGAAACATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330491" ref_strand="+" ref_description="SGN-E330491 [cTOD-4-H8]">
      <seq>ttacacgagcagggaaactttttgcacttcacacaggtgatggccgaattgtttggtctcgactactgaatgctttccataaatcaggaacttgtgaaagtccaagggggatcaagttacatcagtggcaggtgccgcatcatcatgcattagatgagaacccatcagtccttgtagttggaacatgtggacataattcagatgcgtctggtattctctcctttgttgatgcatacaaaggagaggagcttaattacttagctcctgttcattccattacgcaaattattcctctgccatttactgattcaactgagcagcgtctacatctaataatagattctgaggggtacggccacctgtaccctagaactcctgaggcagttgacatttttcaaaaggagttgggaaacatatattggtattcagttgatataaacaataatctcttaaaggggcatgtggtgaagaaaaattgcaaagaggagatatctgatgactactgttttgagtccagtgacctttggtctgttataatcccctcagattcagaaaagatcattgcaacttcaaccagaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="4838" stop="6022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5138" g_stop="5722" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E330491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5138" e_stop="5722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTA</genome_strand>
        <mrna_strand>TTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245866" ref_strand="+" ref_description="SGN-E245866 [cLEF-51-A24]">
      <seq>tcaactgatcatcgactacatgtaataataaattctgaagggtacagccacctgtaccctataactcctgaggcagttaacatttttcaaaaagagttggaaaacatatattggtattcagttgatataaacaataatctcttaaaggggcatgtggtgaagaaaaattgccaaaaggagatatctgatgactactgttttgagtccatagacctttggtctgttataatcccctcagattcagaaaagatcattgcaacttcaaccagaaaatttagtgaggttgttcacacgcaagctaaagttaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="5146" stop="6207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5446" g_stop="5727" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5728" i_stop="5877" i_length="150">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5878" g_stop="5907" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="312" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E245866" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5446" e_stop="5727"/>
          <exon e_start="5878" e_stop="5907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAGGTAATCCTTTGCTCTTCTTTAAAAGATCATTGTAACTTGAGCAAAGAAAAATTAAGAGAGCTGTCTTGGTAAAAGTTACCACAGATTGTGCTGCTGAACCTTGAGATTGTAGTTTTATATTCTTATTTTTTCTGCTTCTCGTTTTTTCAGGTTGTTCACACGCAAGCTAAAGTTAACGCT</genome_strand>
        <mrna_strand>TCAACTGATCATCGACTACATGTAATAATAAATTCTGAAGGGTACAGCCACCTGTACCCTATAACTCCTGAGGCAGTTAACATTTTTCAAAAAGAGTTGGAAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCCAAAAGGAGATATCTGATGACTACTGTTTTGAGTCCATAGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAG......................................................................................................................................................GTTGTTCACACGCAAGCTAAAGTTAACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708575" ref_strand="+" ref_description="SGN-E708575 [FA36AF01]">
      <seq>ctttatcttgttgacacaataactggccgagtgctgctccgtatgtctcatcatggctgccagggacctgtacatgcagtatttagtgaaaattgggtcgtctatcactacttcaacctgcgtgcacacagatatgagatgtctgttgttgagatctacgaccagtctcgcgcggacaacaaagatgtcctgaagcttgttcttggaaagcataatcttagtgcgcctgtctcttcctactcgcgtcctgaaatcatgaccaagtctcaatcttacttcttcacacacagtgtgaaagcagtagcagttacctcaacagcaaaaggcatcacttccaaacaactgcttattggcacaattggtgatcaggttttggcacttgacaagcgttttcttgatcctcgtcgatcactgaaccctactcaagctgaaaaggaggaagggattatgcctcttactgatacattgccaatcatgccacaggctttcgtcacacacgcccttaaagtggaaggccttagaagcataatagctataccagcaaagctagagtcaaccaccctcgtctttgcccacggagttgatctctttttcacacggcttgctccttcaaagacatacgactctctcaccgatgatttcaattatgctttgcttctccttaccatagttgccctagttatatcaattttcgtgacgtggatttggtccgagaggaaagatttacaggagaagtggaggtgagcctttcaatcaacaaagtggaggcgagtccaaagccattacacttcagtcgttgtactgttttagtactcaaaaccttctttttttttggcactttaacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="5723" stop="9140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6022" g_stop="6099" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6100" i_stop="6229" i_length="130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6230" g_stop="6325" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="174" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6326" i_stop="6421" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6422" g_stop="6616" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="369" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6617" i_stop="6749" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6750" g_stop="6863" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="483" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6864" i_stop="8474" i_length="1611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8475" g_stop="8840" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="849" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E708575" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6022" e_stop="6099"/>
          <exon e_start="6230" e_stop="6325"/>
          <exon e_start="6422" e_stop="6616"/>
          <exon e_start="6750" e_stop="6863"/>
          <exon e_start="8475" e_stop="8840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCAGTAAGTTTTCCTTGACTCAGACCCTGTACTGCTAAAATAATTTTTGCTTGTAAAGATAATAGTCTTTTATCTCGATGTTCTTTTCTACTATTAAGTTACCAAGTATTGTTACACGCCTCTCTATGTGAAGGTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCGGTACATTTTTTCACCAATTGTTATCTTTCAGTTTGTTCTCTATAGACCTTATTTTTCATTCTGTAACCCTTGTTTACCATACTTAAATATTTGTAGGACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAGGTCAGATTTGCCTATCTCTTGTCCAAACACTAATAGCTTTACTTTCATGCTATTCTCTTGGTTAATGGAGTTGTCATTTGTTATTTTGCTTGTATCTTAGACATATCATGCTCCATATGTTGGTATAATGCAGGTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAGGTGAGAGCTTTTTAATCTTGCTGCAAAGGAAAAACACATTACATTTTGTTGAATAAAGAAATAGTCCTTTACATCAAGGGAGAGTTTTGATGGAAGGAACGGCACGGTAACGAAATAATTCCTTTATGTGCATTTATATGCATAGAGAAATTGATTGAAATGATAAATTTGGCCAATTTGTATTTCTTGATCTATGTATGCATTTGTTTGATTGGAGTAAAAACAGGAGGGGCAGGAGGAGGGGTAAAAATGGTGAGTATGGACCATTTCAGTGTAGGTAAGAGAGTAAATGATTGAGTACCTTTTTTTTTTCTCGTTAAATAGTTGGGTACTCTTTTATGTCAGATTTTTCAATAACTGAATGGGAAGGGAGTGTATTATATTTGATTCAGTAGTTCAATTTCAACTTTACCAAAATACTGCAAAGAAAATCATCAATAATTCACCAAGGGGAAGTAAATCATTTCCTCTCTCCTCCCATTTTGAAACCAAAGATTAAGCGATTATGTTTTCCATTGGCTAATTAATAATGTTTATTAGTGGCAGTTCTACTCAGAAACGTAGAGTTCTGTAACCAAATTTGTTAGCATATTTCCTTTATAGAGCCTTTTGGCTATAATCTCATAACGGGGCCAGTCTAGAGGCCTTAGTGATCATAATAATCCTAGTTAGTGGTGTTTCTAAGATAAGAGCATTTGATATTAAATCTACTTCTAGAACTTATGAGCTTGTCTTTTTTGAAGCATTTAATATTAAATCTACTTCTAGAACATATGAGCTAGTTTTTTTGAAGCTTTTGATGGTAAAGCTAGTTCTAGACTAGGAATACTAATGTGTAGTACCATATTGCATCAAGAACGTGTAGGAAACTACTCCAGGTTGGTTTCTCTATTGAGAGAAATAATCACATCAATTGAAGGAACCTGGCATCTTTTTCACTCTAGACCATGAAACTTGTTTTGGTCTTGGTGATGCTTTCACTCTTTTAAATTTTAAGACTTCGTTAAACTTTTACGCCTTTAATGGCATTTTTTTTTGGCTAGGATTGAGAGTAGATTGAGTCTCGTGTTTGTCAGTTGGCACATAGGTGATCTTATATGCTGATATATGAAAGGACTTTGATCAAACAGAGATTTGTATTCTCACGTTTTTGTTCTTTGTGTAGCTCTCATTACCATTTTGAATTTTTATATAGGGTTACATACTCACATGTATACGAGTTGAAATTAGTTAAACTAAGTTTTGATGGGATATCTTAAATGCTAGTATAAGTTCCTCTGATCAAACAGACTCATTTGCATGTGTTTCTAAAGAACTTGTGTTATTCTTCTCATTTCTCTGGATTTATTTCATGGTAATGTTTTTTACATGCATCTTACAATATTTTATATAGGAATAAGAAATGAGAAAATACATCTCCCTCTCTTGTATCATATGTTGGTCTGGAAAACAGAGTTGTCCTTCGAGATAGTTGAATTGAATGCTTGCAGAATTCAGACCTGCTAACTCTTAAGAACAAAAGGCATATCATAAATCGTTATCTGAGTCTTGTATTCTATATGGTAGAACTATTAACAGTTGGTTCTTCATACTGACTTGATGGTTCTGCAGGCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</genome_strand>
        <mrna_strand>CTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCA..................................................................................................................................GTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCG................................................................................................GACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAG.....................................................................................................................................GTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368501" ref_strand="+" ref_description="SGN-E368501 [TUS-23-F4](-)">
      <seq>aaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcagtgtaacacattttagaatgtttttgtataatggaaattgttgagtactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="10287" stop="8806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9987" g_stop="9934" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9800" g_stop="9102" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="753" r_length="699" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E368501" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9987" e_stop="9934"/>
          <exon e_start="9800" e_stop="9102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACTATACTAATCTG</genome_strand>
        <mrna_strand>AAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393072" ref_strand="+" ref_description="SGN-E393072 [TUS-37-H18](-)">
      <seq>ggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcagtgtaacacattttagaatgtttttgtataatggaaattgttgagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="10068" stop="8806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9768" g_stop="9113" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="668"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E393072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9768" e_stop="9113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</genome_strand>
        <mrna_strand>GGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392996" ref_strand="+" ref_description="SGN-E392996 [TUS-37-I19](-)">
      <seq>tgcttttctgctactattgggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctttacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcagtgtaacacattttagaatgtttttgtataatggaaattgttgagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="9979" stop="8806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9679" g_stop="9113" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="580"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392996" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9679" e_stop="9113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTCTGCTACTATT-GGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</genome_strand>
        <mrna_strand>TGCTTTTCTGCTACTATTGGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTTTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392918" ref_strand="+" ref_description="SGN-E392918 [TUS-37-J21](-)">
      <seq>aaaaaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataaccttttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaataataaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcaaaataacacattttagaatgtttttgtataatggaaattgtagagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="9753" stop="8806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9455" g_stop="9113" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="355"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392918" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9455" e_stop="9113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</genome_strand>
        <mrna_strand>AAAAAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTTTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATAATAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAAAATAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTAGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392998" ref_strand="+" ref_description="SGN-E392998 [TUS-37-I21](-)">
      <seq>acctcgatttagatgtctacgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaattttcagttcttatttgtcttattggcagtgtaacacattttagaatgtttttgtataatggaaattgttgagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="9728" stop="8806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9428" g_stop="9113" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="328"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392998" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9428" e_stop="9113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</genome_strand>
        <mrna_strand>ACCTCGATTTAGATGTCTACGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218043" ref_strand="+" ref_description="SGN-E218043 [cLEL-23-A1](-)">
      <seq>cttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcactttgctgttgtaagcattgctgcttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="9957" stop="8890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9657" g_stop="9191" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="481"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E218043" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9657" e_stop="9191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAA</genome_strand>
        <mrna_strand>CTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCACTTTGCTGTTGTAAGCATTGCTGCTTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217967" ref_strand="+" ref_description="SGN-E217967 [cLEL-23-A1](-)">
      <seq>atattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtaaaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgactagacgcgagacgagagcaatttgtgttttttgcttcatattggtcaagctgttgtagaagtattatttttttcttcttgtcaaaaattggtttctctgtatgcacattgcatcaattgtaaaagcaatttgctgttgtaagcattgctgcttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="9883" stop="8890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9583" g_stop="9191" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="407"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E217967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9583" e_stop="9191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAA</genome_strand>
        <mrna_strand>ATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAAAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343346" ref_strand="+" ref_description="SGN-E343346 [cTOF-19-A11]">
      <seq>ttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttccccaccgagcttagactctaccttcattctgacctcaaaagatttgtcctttagatgttgtctctgtcctgacttgcacatgtatagtagaagaggtctctacgttcattcagacctcgatttagatgtctatgttgactcgccatgtaaataacctcttagtgaaggatggcaaagtgaagatgcatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13158" stop="9050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12858" g_stop="12820" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="103" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9800" g_stop="9350" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="626" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E343346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12858" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACT</genome_strand>
        <mrna_strand>TTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392999" ref_strand="+" ref_description="SGN-E392999 [TUS-37-I21]">
      <seq>ctatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcatttctaagttcccccaccgagcttagactctacctttcttcttaacctcaaaaaatttgtcctttaaatgttgtctctgtcctgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="76" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="173" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="237" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="309" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9467" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="645" r_length="336" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392999" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTT-CCCCACCGAGCTTAGACTCTACCTTCATTC-TGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTT</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCCACCGAGCTTAGACTCTACCTTTCTTCTTAACCTCAAAAAATTTGTCCTTTAAATGTTGTCTCTGTCCTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368502" ref_strand="+" ref_description="SGN-E368502 [TUS-23-F4]">
      <seq>tatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagctgcgccaactaatattactgtagttggctcgtaattgtgtcatttttaagttccccaccgagcttagactctacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="75" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="172" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="236" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="308" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9518" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="591" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E368502" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTT</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTGCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTTTAAGTTCCCCACCGAGCTTAGACTCTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392997" ref_strand="+" ref_description="SGN-E392997 [TUS-37-I19]">
      <seq>ctatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttttgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctcgtaattgtgtcattttcaagttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="76" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="173" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="237" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="309" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9538" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="572" r_length="263" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCA</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTTCAAGTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243622" ref_strand="+" ref_description="SGN-E243622 [cLED-34-D21]">
      <seq>tatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctactattggtccttgtgattggttccccatttttaacttaattcagttctgacttcctttggtaatttataagcttcgccaactaatattactgtagttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="75" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="172" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="236" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="308" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9565" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="544" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E243622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTC</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTCTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393073" ref_strand="+" ref_description="SGN-E393073 [TUS-37-H18]">
      <seq>ctatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcactctgcagcacacgagagctagtgctcttctgctactattggtccttgtgaatggttccccatttttaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="76" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="173" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="237" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="309" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9630" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="480" r_length="171" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E393073" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTT</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCACTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGAATGGTTCCCCATTTTTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240043" ref_strand="+" ref_description="SGN-E240043 [cLED-32-K16]">
      <seq>tgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatggacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgcgatgttcagtctgcagcacacgagagctagtgctcttctgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13399" stop="9365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13099" g_stop="13037" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="224" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="296" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9665" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="432" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E240043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13099" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACT</genome_strand>
        <mrna_strand>TGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392730" ref_strand="+" ref_description="SGN-E392730 [TUS-37-J21]">
      <seq>ctatagctgctgctgtttcaaaatcagcaaggccaatcgtctcacgaacaaaaccgtgctttttagtgtcctcaagcatagctgagatatttcccccagtttctttgaacttcgatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatgtacagattatgattgttcctcatctgtgaatgtgtccataacttctggcaagggtgaatttatcaacgctggacagttgagtgtgaacggtgcatcaggctgtgctatgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13410" stop="9406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13037" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="76" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="173" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="237" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9934" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="309" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9800" g_stop="9707" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="403" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E392730" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9934"/>
          <exon e_start="9800" e_stop="9707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATTGTAAGTACCCTCTTCTCATATCTGATGTTTATTATTTATATTTTGTGTTTGTTTTTTTTTACTTTGTGCGCCATGGCCTGCTTCCTCGGTTCTTCCCTTTGAATTTGTTCTCTATTTTTAATGTTTATCATAGGTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGAT</genome_strand>
        <mrna_strand>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGTACAGATTATGATT.....................................................................................................................................GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242054" ref_strand="+" ref_description="SGN-E242054 [cLED-27-D12]">
      <seq>acaaaaccgtgctttttagtgtcctcaagcataactgagatatttcccccagtttctttgaacttctatggcggcgcatcaatggctttaagaccagcagactaccttgtgcatatgggctttgttgaaggtgctgctatgtggtgcattggctttgaaagacaagatcaaggtgtaacaattttaggagatcttgttctgaaagacaaaatcattgtgtatgacttggctcggcaaaggattggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="13365" stop="9647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13065" g_stop="13037" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12916" g_stop="12820" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="126" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12676" g_stop="12613" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="190" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10005" g_stop="9947" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="249" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E242054" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13065" e_stop="13037"/>
          <exon e_start="12916" e_stop="12820"/>
          <exon e_start="12676" e_stop="12613"/>
          <exon e_start="10005" e_stop="9947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCGTGCTTTTTAGTGTCCTCAAGGTTCATTCTTCCATAGTTGAATAGATATTTACTTTAAGGCTTGATCTCTTAACAACAAAAATACCTTTACCCAACTGCTTTGGTGACTCGAATATGACAACCTTTTTCTTTCTGAAATAGCATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTTGTGAGTACCGCTATCTGTATTTGTGTTTGAATGTCTTCTTGAAATTCCATCTGAGACTATATCAACAATGCTATAATGCTGTCCTGTTGTCTTTATAATGAGTTACAAATCTAAACAGTGACTCAATTGTATGTTTCTAACAGGAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAGGTTGGTTCCTTATTTACTATAACATCTATGCCTAAACCCCGAGCTGGTTTCCTGATTAATTTATCAACATATCTGCTAGGATTATGGTTGCTTCTCATATATGCTGCATCATTCCGTGCGTTAGTGTCTTTGTGGGTGCTTAAGCATTCCATCACTCAACAAACTAATATATAACTTGGTGATTATCTGCTTAAACAGAATCGTGTACCTTGGTAATTGTATGCTTGGATAAAATCATCATTCATGCAGTATCGATGTTGATAAAACATGGCCATCCATTTTCTTTTAGATATTAGGACATAATTTTGCAATTTGAAAGTTTGAAGCTAGAAATCAGTTCCTTTGTCTTTTTCTTTTTTAGCATCAGTTCTTTAATCAGAAGATAGGTTCCTTTTGTACCAGTGATTGGGTTAGATATGTTCCAAAGTATGATGCGAAATTAATTTATCCAGTTTTGCCTAGTCTTCCGTTTTTTATGTCAAATTTACTTGCTTTGGGTTCATTTGCTATTGGTTAAAACGCTCAAAGGTGGATCCAGGATTTGAAGTTTTTATGGGTTCTGGATTCTAGTTCTTTTGAGTCACTGCGTTCTAAATTCAATATTTGTACGTAATAAATGAATTTTAAGACAAATATATGATTAGGACCAAAGCTTCTATGTTCTGCCAAACCATTTCTTTCTACTCTACCTCCGCCTCTTAGAATGCTACATTGTTTTTGTTGATCCCTAGTGTTCTAAACATCTCGCAGCGTTACAAAGATATCTATTATAGCTTATTAGACTGAAAGGTGGGTGTGGGACAGTTCTAAATCTTGCAAAGGTCGTGATTGCTACTTTGATGTTGAAGACATCAAATGTGGAATTCATTGAAAGGTGTGTTCAACCGGATACATGACTGCACTCCTAAACTAAGGTTGGAGTTGCATCAAATGGGCCTATTTCTAAAGGACATTCTCATTCATGACCTCAAGATTTTATGTTTAGAACACATTTATTGGACAGGGTGCACTGTACTCATGCACGCTCACACACATATATGCAAGACATCTACAGTAACATAATTTATGAGAAAATGTTAAGTGAAAGGTATGAAAACACTGTCTATTTTTTGTTTGTGTGTATGTATAAAGTCTAAACCGAGCACAATGTTATGCCAACGTTAAGTGAACTATGTATAGATCTTCTTTTTTTGTTTAGGTTGCAGGTGGGAGTGTGTGTGTGGGGGTGGGTGGGGGGGTTGTGTGATTATGTCCGCGTTGAATGTGTGAGTCTTTACTTAGTTATCTGGTAGCATAAATGGTGAGGTTTCATGATGCATGCTAACTGCAGATGACAGCGTTAATTAGCAAAATTAATCAGAAGCTCCATGGTGAAGCACTTTATATAGCAAGTTTTTAGAATAAGTACATGCAAGACACTATCTAGAAAATGCAAGTTCACTCCGCATCCCTGCCTAATAAGTATTAAATATGAAGCGATAGTAGATAGAATCATGGTGCTTAATGCAGACAATCAAGTTATCTGCCCTCAAATCTTCGAGTAGAATAGCAAAATTTGGAGGTAAATCAGGAAAGGACACAAAAAACTAAAACATGTTGGTTGAGATGAAAGATTGTTGTACGATTGTTCATTGATGGTTAAGGATAGAATGATTCCCAGCAAATTGAAAATAAGTTAGTATGACAGTTTTGGGACGAATAATAATAATATATAATGAGTGGACATGTAAAGAGTAAACAATATATGTCCACTAATTGAGTATCGTAGAAATGGATATTGGATGGTCCTGCAATCATACAGATTAGCCGAGTAAAGGCTCGATTTTGCAGTACCGAGTCCAGTGTTTGTCAGGAGTCTTTATAATTTCATTAGAGATACTTTTGTTAGTGTTGGTATAAGTTTGACGTAGAGTACTCCTAATTTTTCTTAAACTTGAAATGTGTTAAACGTGCTAAAATGTCCTCTAAATCCGGTGGTCTTAAAAACGCCAAGTAGGATGTTGGAATTAATGTGTTACTAAATGTAGAAGTGACATTCTTTTTTAAACAGGCTAAAAGAAAGTAAGACACATAAGTTGAAATAGGGAGAGTATCTACTATTGGAATGAAATAGGTCAAACAGAGCGGCATGGTCACAGATGATTTATATATTAGACCTTAACTAGCTTGGAACGGAGACATAATTGACTAACTGGTTTGGAACAGAGTGTAATTGATCTATTTATATGCGTCCCCAGTGCAAATTTTCTTTGTCATGCATATGCCTTTGAGCTTTCCTTCTCTTCCCTCGTAGACATTCTTCTACTTTTGGCTATTCAGTTGATCTTCTGGTTTATCGGTATAAATTCCCGTGTTAGCTTAAGTTAGGAGATTTGACCTTTTAACACCACTAGCCCAAGGTGAACTGTTTCCATGAGTCAACTTTTTTATACGATCTAAAAGTATAAATGCTCAAAAATTTTCCATCTATTCTTTGGCATTTGAACCTTTTATTCCTTGTCAGTTGACTTATTGCATTGCCCTGCTTCTTCATTTCTCCAAGATTCCGTATCCATAGGTAAACGAGAAATCTAGGTTGCACTCACTGTATTTTCTCGTGTTTTTCAGATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGG</genome_strand>
        <mrna_strand>ACAAAACCGTGCTTTTTAGTGTCCTCAAG........................................................................................................................CATAACTGAGATATTTCCCCCAGTTTCTTTGAACTTCTATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT...............................................................................................................................................GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272127" ref_strand="+" ref_description="SGN-E272127 [cLEN-4-D5]">
      <seq>tagacatgctcgaatgttgcagagttttggtggtggtattgttgattttcctgttgttggttcttctgacccttatcttgtcggcctttattttacaaaagtgagactgggaactccggccagataatataacatgcagattgtttcaagaagtgatatactgtgggtcatctgcagtttctgtgacgattgtgctcaaacaagtggacttggggttgagctcaacttctatgatgctacactctcatcaactgcctctcctatttcttgtgcggaccaagtgtgcgcctctatagttcaaactacctctgctgagtgctctacagaaaccaatcagtgtggttacacctttcattatggagatgggagtggcacaactggtcattacgtagccgatttattatatttcgatacagtcctgggaacctcgttgattgccaactcctcagcaccaattgatgttgggtgcagcacctctcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="17265" stop="15375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16965" g_stop="16882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16881" i_stop="16171" i_length="711">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16170" g_stop="16041" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="214" r_length="130" r_score="0.892"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16040" i_stop="15929" i_length="112">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15928" g_stop="15674" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="469" r_length="255" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E272127" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16965" e_stop="16882"/>
          <exon e_start="16170" e_stop="16041"/>
          <exon e_start="15928" e_stop="15674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGGGTAATTGTTTCACCATGTTTCTTGATTTTGAGAGTTTTGGTTGGTTGGAATGTTTTGATGAAAAAGTTTGGTTCTTTATGAAGTTTAAACTTGAAATGTGTGGAGGCTATGGCCTATAGTGTGTTTTGTGTTATTTGTTTTGTGAATTTGGTGTCAATGAAGTGTGAGTTAAATTGTCTATTCTTTGGTTTGAGAATATATTGAGATTCAATATAAAGTACTAGTAGGTGAATTCTTCCTGTTTATCATAGAGTTACCCGTTACTTGCGCTGGTGGGAGGTAGTAGAGGTGTGGAAAAGCTGGTCAGAACATCATGGTTATGGTAAAAATAAGATATTGATTTTTCAGTGTATTGAAGTACCCGTAGTGCAACGAATTGTCTCGTGCTGTTTTTCTTTTCTAGGTGGTTGTCAATTGGATGTTGGTGTTGATGCGGATGTAGCACTGATAGTTCTGTTTGTTTCAAATTGTGTTGTTTCCTATTTTGATGTAAGATTGATAAGTTGTGCTGCTAAAAGCCTAAAAATACAAACATTTTAGCTATATCCCTTTGGTTTTGGCATTTTCCTATCTGTTATTTAAGGATGATGGGCAATGTTGTTGATTTTGAGGGCTGACTATACTATGTAGATGTATATGTTGTTCTACACTATCAATTTTGTTGACCAGCATCTCTCTTTCTCTCGTTTTATACTTTTGTTGTGTTTGTAGCCTTTATTTTACAAAAGTGAGACTGGGAACTCCGCCAAGAGAATATAACGTGCAGATTGATACCGGCAGTGATATCCTGTGGGTCACCTGCAGTTCCTGTGACGATTGTCCTCGAACAAGTGGACTTGGGGTAACTCATCCTCCCCTTGTTATGAATCTTTACTTTCTTATAAAAAAGTGTGGTACTGTGGTAAAAGAGTTACCTTTTGTTACAAACTTTTGACAGTGTTATGTGCACGCAGGTTGAGCTCAACTTCTATGATGCTACAGTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCAGTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGTTTTTGGGTGG</genome_strand>
        <mrna_strand>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTATTTTACAAAAGTGAGACTGGGAACTCCGGCCAGATAATATAACATGCAGATTGTTTCAAGAAGTGATATACTGTGGGTCATCTGCAGTTTCTGTGACGATTGTGCTCAAACAAGTGGACTTGGG................................................................................................................GTTGAGCTCAACTTCTATGATGCTACACTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCATTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGATGTTGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545201" ref_strand="+" ref_description="SGN-E545201 [TUS-67-O21](-)">
      <seq>tttgaacaaatattatttagagaaataaagtgagaattatgaaaatgaatatagtttttatagcctcattaattttggtgttttctaattttattgaagcctcagatggaatggatgttatgcatatttctggcaaagttctttgccaagattgtactcaaggatggaatgaatgggttgatggtgccaaagccatcaaaggtagcatcgtatctctgacgtgcctggacgagagaagaagagtgatgtattacggaagtgacctcacagatgaagctggaattttcgatttgattgttaaccaaacttgtcatggcaaaacaattaagccacaaaattgctttgtgagattggtttcttcacctgatcctgtttgtaatattgccaccgacttcgccggaggaaaatccggtgtaaagctccaccgtccgacggtggtttaccgggacttgctcaaatatgtgcttagccctttctactacacaactcccatgtgtgatgaacctaatattaatgatgatgataatttggagactaatgatgataaaaatcaaaacaattattaaattaagttcttatttttaattttttcttcttctaatgtttgtgtttaatttcccattttgtaaatggaaaatgacaatttatctatgttggatgagttgatgattttattttgtactattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="28793" stop="31927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29093" g_stop="29293" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29294" i_stop="29802" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29803" g_stop="30080" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="479" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30081" i_stop="31418" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31419" g_stop="31637" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="698" r_length="219" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E545201" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29093" e_stop="29293"/>
          <exon e_start="29803" e_stop="30080"/>
          <exon e_start="31419" e_stop="31637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAGGTATGTAATTTATCGTAACAAAATTCAGAATTTAGACGTTATAAATTTTGAACTAATATAGAGAATAGATTCATAAATCATAAATGTATAACTTAACTCTATCTACGTAATGTCTAAACACGTCTATCTATGTCAGATGAACACAATATATGAAATTAAACACATCTATGTAAGACAGACTGAAATTATCAAATTGTGATATGGGGATGAATAGAAGTGAATAATATTATAGTTGTGTGAATTGTATTATGATCCATTGGTTAACTTATTTTTACTTATTTATATTAAACTTTGAATTTATAATATATTTAGTTGTTCACTCAAAAAATTGTTGGCAAATGTATAATATATGTATATATTATGTATACTGCCGAGAGGCTATAAATATTTTTGGCCGAAGCAACGACATACAATAACTTATTTATAAATTCAATCCATTTTGATCCGTCTTATCATATTTAACATATAAGATCACATTCATTGTGTAACTTGCATCGAATCTCGTGCAGGTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTACTACACAACTCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAATTACGTGCAA</genome_strand>
        <mrna_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545202" ref_strand="+" ref_description="SGN-E545202 [TUS-67-O21]">
      <seq>tttgaacaaatattatttagagaaataaagtgagaattatgaaaatgaatatagtttttatagcctcattaattttggtgttttctaattttattgaagcctcagatggaatggatgttatgcatatttctggcaaagttctttgccaagattgtactcaaggatggaatgaatgggttgatggtgccaaagccatcaaaggtagcatcgtatctctgacgtgcctggacgagagaagaagagtgatgtattacggaagtgacctcacagatgaagctggaattttcgatttgattgttaaccaaacttgtcatggcaaaacaattaagccacaaaattgctttgtgagattggtttcttcacctgatcctgtttgtaatattgccaccgacttcgccggaggaaaatccggtgtaaagctccaccgtccgacggtggtttaccgggacttgctcaaatatgtgcttagccctttctactacacaactcccatgtgtgatgaacctaatattaatgatgatgataatttggagactaatgatgataaaaatcaaaacaattattaaattaagttcttatttttaattttttcttcttctaatgtttgtgtttaatttcccattttgtaaatggaaaatgacaatttatctatgttggatgagttgatgattttattttgtactattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="28793" stop="31927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29093" g_stop="29293" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29294" i_stop="29802" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29803" g_stop="30080" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="479" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30081" i_stop="31418" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31419" g_stop="31626" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="687" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="697"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E545202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29093" e_stop="29293"/>
          <exon e_start="29803" e_stop="30080"/>
          <exon e_start="31419" e_stop="31626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAGGTATGTAATTTATCGTAACAAAATTCAGAATTTAGACGTTATAAATTTTGAACTAATATAGAGAATAGATTCATAAATCATAAATGTATAACTTAACTCTATCTACGTAATGTCTAAACACGTCTATCTATGTCAGATGAACACAATATATGAAATTAAACACATCTATGTAAGACAGACTGAAATTATCAAATTGTGATATGGGGATGAATAGAAGTGAATAATATTATAGTTGTGTGAATTGTATTATGATCCATTGGTTAACTTATTTTTACTTATTTATATTAAACTTTGAATTTATAATATATTTAGTTGTTCACTCAAAAAATTGTTGGCAAATGTATAATATATGTATATATTATGTATACTGCCGAGAGGCTATAAATATTTTTGGCCGAAGCAACGACATACAATAACTTATTTATAAATTCAATCCATTTTGATCCGTCTTATCATATTTAACATATAAGATCACATTCATTGTGTAACTTGCATCGAATCTCGTGCAGGTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTACTACACAACTCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTA</genome_strand>
        <mrna_strand>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310060" ref_strand="+" ref_description="SGN-E310060 [cLEZ-8-C24]">
      <seq>ttgaacaaatattatttagagaaataaagtgagaattatgaaaatgaatatagtttttatagcctcattaattttggtgttttctaattttattgaagcctcagatggaatggatgttatgcatatttctggcaaagttctttgccaagattgtactcaaggatggaatgaatgggttgatggtgccaaagccatcaaaggtagcatcgtatctctgacgtgcctggacgagagaagaagagtgatgtattacggaagtgacctcacagatgaagctggaattttcgatttgattgttaaccaaacttgtcatggcaaaacaattaagccacaaaattgctttgtgagattggtttcttcacctgatcctgtttgtaatattgccaccgacttcgccggaggaaaatccggtgtaaagctccaccgtccgacggtggtttaccgggacttgctcaaatatgtgcttagccctttctactacacaactcccatgtgtgatgaacctaatattaatgatgatgataatttggagactaatgatgataaaaatcaaaacaattattaaattaagttcttatttttaattttttcttcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="28794" stop="31839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29094" g_stop="29293" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29294" i_stop="29802" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29803" g_stop="30080" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="478" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30081" i_stop="31418" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31419" g_stop="31539" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="599" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E310060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29094" e_stop="29293"/>
          <exon e_start="29803" e_stop="30080"/>
          <exon e_start="31419" e_stop="31539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAGGTATGTAATTTATCGTAACAAAATTCAGAATTTAGACGTTATAAATTTTGAACTAATATAGAGAATAGATTCATAAATCATAAATGTATAACTTAACTCTATCTACGTAATGTCTAAACACGTCTATCTATGTCAGATGAACACAATATATGAAATTAAACACATCTATGTAAGACAGACTGAAATTATCAAATTGTGATATGGGGATGAATAGAAGTGAATAATATTATAGTTGTGTGAATTGTATTATGATCCATTGGTTAACTTATTTTTACTTATTTATATTAAACTTTGAATTTATAATATATTTAGTTGTTCACTCAAAAAATTGTTGGCAAATGTATAATATATGTATATATTATGTATACTGCCGAGAGGCTATAAATATTTTTGGCCGAAGCAACGACATACAATAACTTATTTATAAATTCAATCCATTTTGATCCGTCTTATCATATTTAACATATAAGATCACATTCATTGTGTAACTTGCATCGAATCTCGTGCAGGTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTACTACACAACTCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTA</genome_strand>
        <mrna_strand>TTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310130" ref_strand="+" ref_description="SGN-E310130 [cLEZ-8-C23]">
      <seq>ttgaacaaatattatttagagaaataaagtgagaattatgaaaatgaatatagtttttatagcctcattaattttggtgttttctaattttattgaagcctcagatggaatggatgttatgcatatttctggcaaagttctttgccaagattgtactcaaggatggaatgaatgggttgatggtgccaaagccatcaaaggtagcatcgtatctctgacgtgcctggacgagagaagaagagtgatgtattacggaagtgacctcacagatgaagctggaattttcgatttgattgttaaccaaacttgtcatggcaaaacaattaagccacaaaattgctttgtgagattggtttcttcacctgatcctgtttgtaatattgccaccgacttcgccggaggaaaatccggtgtaaagctccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="28794" stop="30327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29094" g_stop="29293" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29294" i_stop="29802" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29803" g_stop="30027" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="425" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E310130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29094" e_stop="29293"/>
          <exon e_start="29803" e_stop="30027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAGGTATGTAATTTATCGTAACAAAATTCAGAATTTAGACGTTATAAATTTTGAACTAATATAGAGAATAGATTCATAAATCATAAATGTATAACTTAACTCTATCTACGTAATGTCTAAACACGTCTATCTATGTCAGATGAACACAATATATGAAATTAAACACATCTATGTAAGACAGACTGAAATTATCAAATTGTGATATGGGGATGAATAGAAGTGAATAATATTATAGTTGTGTGAATTGTATTATGATCCATTGGTTAACTTATTTTTACTTATTTATATTAAACTTTGAATTTATAATATATTTAGTTGTTCACTCAAAAAATTGTTGGCAAATGTATAATATATGTATATATTATGTATACTGCCGAGAGGCTATAAATATTTTTGGCCGAAGCAACGACATACAATAACTTATTTATAAATTCAATCCATTTTGATCCGTCTTATCATATTTAACATATAAGATCACATTCATTGTGTAACTTGCATCGAATCTCGTGCAGGTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACC</genome_strand>
        <mrna_strand>TTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377771" ref_strand="+" ref_description="SGN-E377771 [TUS-21-J3](-)">
      <seq>tgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagacaagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaaagaagttattcacccgtcactataatatttatactaaattccatcaattcattaaacatgatggttgcgctcttggatgattaattaatcaccagaccaatgaagagactctccagaatatgcattttaataaaagaaaatttgttgaaattttgacaatcgacctttcaatagaatgtactatttaataatcgatcaccagatcaatgaagagactctctagaatgtgcattttaataaaaaagaatttgttgaaatttcgacaatcgacctttcggtagaatgtactgggaaatgaagtgcagccaaagaattaggagaatttggacaagttttgtttattttgactttttcattattagttactattttttgtaattggttagatcaattattaatagaaattattggtttggtatatagttcatatcaagttaaccacatatttgtattgagattattataaacgtatatacaacaactctagattcttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="35560" stop="34317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35260" g_stop="34616" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E377771" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35260" e_stop="34616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAATTATAC</genome_strand>
        <mrna_strand>TGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389539" ref_strand="+" ref_description="SGN-E389539 [TUS-4-F18](-)">
      <seq>gaaaaaaaaaatgaaatcgaacccttccagacaagtttgattttatctgaatctttattgaaaaaaaaaaagaagttattcacccgtcactataatatttatactaaattccatcaattcattaaacatgatggttgcgctcttggatgattaattaatcaccagaccaatgaagagactctccagaatatgcattttaataaaagaaaatttgttgaaattttgacaatcgacctttcaatagaatgtactatttaataatcgatcaccagatcaatgaagagactctctagaatgtgcattttaataaaaaagaatttgttgaaatttcgacaatcgacctttcggtagaatgtactgggaaatgaagtgcagccaaagaattaggagaatttggacaagttttgtttattttgactttttcattattagttactattttttgtaattggttagatcaattattaatagaaattattggtttggtatatagttcatatcaagttaaccacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="35489" stop="34374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35189" g_stop="34674" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E389539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35189" e_stop="34674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATAT</genome_strand>
        <mrna_strand>GAAAAAAAAAATGAAATCGAACCCTTCCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550121" ref_strand="+" ref_description="SGN-E550121 [TUS-5-F30](-)">
      <seq>gaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaaagaagttattcacccgtcactataatatttatactaaattccatcaattcattaaacatgatggttgcgctcttggatgattaattaatcaccagaccaatgaagagactctccagaatatgcattttaataaaagaaaatttgttgaaattttgacaatcgacctttcaatagaatgtactatttaataatcgatcaccagatcaatgaagagactctctagaatgtgcattttaataaaaaagaatttgttgaaatttcgacaatcgacctttcggtagaatgtactgggaaatgaagtgcagccaaagaattaggagaatttggacaagttttgtttattttgactttttcattattagttactattttttgtaattggttagatcaattattaatagaaattattggtttggtatatagttcatatcaagttcaccacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="35489" stop="34375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35189" g_stop="34675" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E550121" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35189" e_stop="34675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATA</genome_strand>
        <mrna_strand>GAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTCACCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242883" ref_strand="+" ref_description="SGN-E242883 [cLED-31-K21]">
      <seq>tgcttttgtggtcaatgttggtgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagtggcttctttgcatagtcttccattcaatagcataataaagccatcacctaaattaattagtgaaacaaatccaagtctttacaaagacacaaattttgctgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagacaagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaaagaagttattcacccgtcactataatatttatactaaattccatcaattcattaaacatgatggttgcgctcttggatgattaattaatcaccagaccaatgaagagactctccagaatatgcattttaataaaagaaaatttgttgaaattttgacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="36607" stop="34659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36307" g_stop="36274" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35433" g_stop="34959" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="509" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E242883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36307" e_stop="36274"/>
          <exon e_start="35433" e_stop="34959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATC</genome_strand>
        <mrna_strand>TGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236256" ref_strand="+" ref_description="SGN-E236256 [cLED-20-C7]">
      <seq>tgcttttgtggtcaatgttgttgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagtggcttctttgcatagtcttccattcaatagcataataaagccatcacctaaattaattagtgaaacaaatccaagtctttacaaagacaccaaattttgctgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagacaagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaaaagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="36607" stop="34814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36307" g_stop="36274" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35433" g_stop="35114" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="356" r_length="322" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E236256" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36307" e_stop="36274"/>
          <exon e_start="35433" e_stop="35114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACA-CAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTG-AAAAAAAAAAAGAAGT</genome_strand>
        <mrna_strand>TGCTTTTGTGGTCAATGTTGTTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACCAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236210" ref_strand="+" ref_description="SGN-E236210 [cLED-20-D23]">
      <seq>tgcttttgtggtcaatgttggtgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagtggcttctttgcatagtcttccattcaatagcataataaagccatcacctaaattaattagtgaaacaaatccaagtctttacaaagacacaaattttgctgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagacaagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="36607" stop="34820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36307" g_stop="36274" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35433" g_stop="35120" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="348" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E236210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36307" e_stop="36274"/>
          <exon e_start="35433" e_stop="35120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAA</genome_strand>
        <mrna_strand>TGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367963" ref_strand="+" ref_description="SGN-E367963 [TUS-22-L9]">
      <seq>tgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaatcttatttataaagttagtggaagccatcctagaaagtcttggaattaacgttgcaacaaaaaacaagacacaacaaaatgatgaagaaataatgttaaaagaatttgaagatggaagccagctaatggctgttaatttttatccaccttgtcctaatcctgatttgacacttggaatgccacctcattctgattatggatttttaactcttctactccaagatgaagttgaaggtttacaagtcaagtccaatgatgattgggtcactattcaacccatccctaatgcttttgtggtcaatgttggtgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagtggcttctttgcatagtcttccattcaatagcataataaagccatcacctaaattaattagtgaaacaaatccaagtctttacaaagacacaaattttgctgcatttcttgaatacttaaaatcttgtgattccactaataaaagtttccttgagaacagaaggttaacatgaaaaaaaaaatgaaatcgaacactaccagacaagtttgattttatctgaatctttattgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="38059" stop="34824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37759" g_stop="37706" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36628" g_stop="36274" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="409" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35433" g_stop="35124" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="719" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E367963" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37759" e_stop="37706"/>
          <exon e_start="36628" e_stop="36274"/>
          <exon e_start="35433" e_stop="35124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAA</genome_strand>
        <mrna_strand>TGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGAACAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237641" ref_strand="+" ref_description="SGN-E237641 [cLED-19-O5]">
      <seq>tgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaatcttatttataaagttagtggaagccatcctagaaagtcttggaattaacgttgcaacaaaaaacaagacacaacaaaatgatgaagaaataatgttaaaagaatttgaagatggaagccagctaatggctgttaatttttatccaccttgtcctaatcctgatttgacacttggaatgccacctcattctgattatggatttttaactcttctactccaagatgaagttgaaggtttacaagtcaagtccaatgatgattgggtcactattcaacccatccctaatgcttttgtggtcaatgttggtgaccacctcgagatatttagcaatggaaaatacaaaagtgtgttacatagagttcttgtgaactctttaaagtcaagaatttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="38059" stop="35060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37759" g_stop="37706" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36628" g_stop="36274" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="409" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35433" g_stop="35360" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="483" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E237641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37759" e_stop="37706"/>
          <exon e_start="36628" e_stop="36274"/>
          <exon e_start="35433" e_stop="35360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAGGTACGAGATATTTTTCGAGTTTAACTTTTATACACTGACTTGACCTGACGTACACTAAGAGGTCTTATAGTTACATTTTGATCGTTTAATAGAGAGATTAAGATTTAAAAATTGTATAAGTTTTGTTTTTAGGTAGCTAGGTTTTTGTTGCTGAACTCGTTAGATGTTAGACCATCGTGAGGTGCGAGATGTTTTGAAGTTTAAACTTCTATATACTGATAATATGTGGAGATTTATAAATTATCAGACCGCTCAATAAATAATTATAGTCTATTTATACAGAAGCGAATTTAGAATTTAAATCTCATTATATCGTTAACAAATCAGATGTTTGAAATTATGGATTCAAGATTTCAAAAATGCCTCCATAATTCTTTGATAACTCTTTGATTTTAATATTTCACGTGACTGGTTTAAAATTAACTCAAAGTCTTTCGAATTACTTCCTCTAATCCAAAATAATTTGACACAAAATCAAGAATTTTTTTTGTCAATTCTTTTTCCCTAGACATATTCCTACTTCAATAAACAGATTTCATTATGTCAACCTAAAAGAAGAAATCATAATTAAGGATATTTTAATAAAATTCCTATTAATTTTAGGAGTACGTGAATTTCATAATTCAAATGCTCAAATCTAAAATATCTATAATTTTAGACGAAAAAAGTACTTCCTTCAAATTTATTGTGAATCAAATTAAGACGCATAAATGAAACAAATGGACTACTATTACAAAGACTAAACTATTAATTTAAACATTTTTTTTTCTTTTAATTTTCATTTAAAGTTCCAATTTCATAATTTTTTGACATGGTTTTTTTAATTTTATTTTCTTGCAGATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGT</genome_strand>
        <mrna_strand>TGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550120" ref_strand="+" ref_description="SGN-E550120 [TUS-5-F30]">
      <seq>cttctcttcaatttttatttttaaaaaatgtctccatcattggcaaaatctagtgaaaaattgaagaatgaaattgaagattatcataaaggagtaaagtatttgcatgaaagtggaattcaaaaagttccaaagaaatacatttttcctatttcagaaagaccaaattgttatactataaatgaaaatccacaagttgctagcaaacacaatcttaagttgcctgtcatagatttttctcaactctatggtcctaatagagctcaagttcttgattcactctcctatgcctgtgaaaactatggattttttcagttgacaaaccatgggattccagaagaggtaataaaaaatatggtggatgttggaggaaggttttttgatcttccattagtagaaagggaaaagtacatgacaaaagacatgacaacaccagttagatatgggacaagttttaatcaaacaaaagatggtgtcttttgttggagggactttctcaagcttgtttgtgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaatcttatttataaagttagtgggagccatcctagaaagtcttggaattaacgttgnncacaaaaacagacacnnacaaatgatgaagaaaatatgttaaaagaatttgaagatggaagccagctaatggctgttatttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="39209" stop="36150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38909" g_stop="38594" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38593" i_stop="37954" i_length="640">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37953" g_stop="37706" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="563" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36628" g_stop="36450" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="740" r_length="177" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E550120" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38909" e_stop="38594"/>
          <exon e_start="37953" e_stop="37706"/>
          <exon e_start="36628" e_stop="36450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGGTAACGTGTCGTGATATACTTTCTTTTTTAGTCTGTCCTAAGAAAGAACAACATTTCTTTATATATTTAGAAAAATTTTAACTTTGAACTTCATATATCATAAACTCTTGATGATATAATTTATGGCAGACACACATCTTAACTAAATTAAGGTCTTATTACCCCTGAATTTATTTTTTTATAATTTTATACATCTTTTGTCTTACGAAGCACACACCATGACTCCACGCAATTATGACGCGTGGGAGATATTTGGATACCACGTTAGCAAAAAAGGTGCAAAAAATTACAAAAAAAAAATAAATTCAGGGAAGGTAATAGAACCTTACAATAGTTAAGGTGTCTCTGAGATTTTCGTCAATAGTCTAGGGAGATACTTGTGCATTTTCCCTAATTTCATAGTCACAAAAATGTCATTTTTGACAACACCATAAGAAATTCATATTCTTTAGCAGTGACGTGACATGTTTCAGACCACAAATTTTAGTCAAATCAAATATCATCACATCAATTGAGACGAAATGAGTATATCATTTTAAGAGGTCCTAAATGACTATGAGTTGACCCTACACTTAATTAGTTGTATCTACCTTATTTTTAATGGTTAACTAATGTTGTGATTTTTAATGTTGTCATGCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATC</genome_strand>
        <mrna_strand>CTTCTCTTCAATTTTTATTTTT-AAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGGAGCCATCCTAGAAAGTCTTGGAATTAACGTTG-NNCACAAAAACAGACACNNACAAATGATGAAGAAAATATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTT-ATTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389798" ref_strand="+" ref_description="SGN-E389798 [TUS-4-F18]">
      <seq>cttcttttcaatttttatttttaaaaaaatgtctccatcattggcaaaatctagtgaaaaattgaagaatgaaattgaagattatcataaaggagtaaagtatttgcatgaaagtggaattcaaaaagttccaaagaaatacatttttcctatttcagaaagaccaaattgttatactataaatgaaaatccacaagttgctagcaaacacaatcttaagttgcctgtcatagatttttctcaactctatggtcctaatagagctcaagttcttgattcactctcctatgcctgtgaaaactatggattttttcagttgacaaaccatgggattccagaagaggtaataaaaaatatggtggatgttggaggaaggttttttgatcttccattagtagaaagggaaaagtacatgacaaaagacatgacaacaccagttagatatgggacaagttttaatcaaacaaaagatggtgtcttttgttggagggactttctcaagcttgtttgtgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaaatcttatttataagttagtggaagccatcctagaaagtcttggaattaacgttgnncacaaaaacaagacacaacanaatgatgaagaaataatgttaaaagaatttgaagatggaagccagctaatggctgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="39209" stop="36158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38909" g_stop="38594" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38593" i_stop="37954" i_length="640">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37953" g_stop="37706" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="564" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36628" g_stop="36458" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="735" r_length="171" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E389798" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38909" e_stop="38594"/>
          <exon e_start="37953" e_stop="37706"/>
          <exon e_start="36628" e_stop="36458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGGTAACGTGTCGTGATATACTTTCTTTTTTAGTCTGTCCTAAGAAAGAACAACATTTCTTTATATATTTAGAAAAATTTTAACTTTGAACTTCATATATCATAAACTCTTGATGATATAATTTATGGCAGACACACATCTTAACTAAATTAAGGTCTTATTACCCCTGAATTTATTTTTTTATAATTTTATACATCTTTTGTCTTACGAAGCACACACCATGACTCCACGCAATTATGACGCGTGGGAGATATTTGGATACCACGTTAGCAAAAAAGGTGCAAAAAATTACAAAAAAAAAATAAATTCAGGGAAGGTAATAGAACCTTACAATAGTTAAGGTGTCTCTGAGATTTTCGTCAATAGTCTAGGGAGATACTTGTGCATTTTCCCTAATTTCATAGTCACAAAAATGTCATTTTTGACAACACCATAAGAAATTCATATTCTTTAGCAGTGACGTGACATGTTTCAGACCACAAATTTTAGTCAAATCAAATATCATCACATCAATTGAGACGAAATGAGTATATCATTTTAAGAGGTCCTAAATGACTATGAGTTGACCCTACACTTAATTAGTTGTATCTACCTTATTTTTAATGGTTAACTAATGTTGTGATTTTTAATGTTGTCATGCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACC-AAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAA</genome_strand>
        <mrna_strand>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAAATCTTATTTAT-AAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGNNCACAAAAACAAGACACAACANAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377772" ref_strand="+" ref_description="SGN-E377772 [TUS-21-J3]">
      <seq>ttcttttcaatttttatttttaaaaaaatgtctccatcattggcaaaatctagtgaaaaattgaagaatgaaattgaagattatcataaaggagtaaagtatttgcatgaaagtggaattcaaaaagttccaaagaaatacatttttcctatttcagaaagaccaaattgttatactataaatgaaaatccacaagttgctagcaaacacaatcttaagttgcctgtcatagatttttctcaactctatggtcctaatagagctcaagttcttgattcactctcctatgcctgtgaaaactatggattttttcagttgacaaaccatgggattccagaagaggtaataaaaaatatggtggatgttggaggaaggttttttgatcttccattagtagaaagggaaaagtacatgacaaaagacatgacaacaccagttagatatgggacaagttttaatcaaacaaaagatggtgtcttttgttggagggactttctcaagcttgtttgtgaccctcttcctcaagtccttcctcattggccttcttctccttcttattttagggaaatggcagttacatactctaaagagaccaaaatcttatttataaagttagtggaagccatcctagaaagtcttggaattaacgttgcaacaaaaaacaagacacaacaaaatgatgaagaaataatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="39208" stop="36197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38908" g_stop="38594" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38593" i_stop="37954" i_length="640">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37953" g_stop="37706" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="563" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36628" g_stop="36497" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="695" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E377772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38908" e_stop="38594"/>
          <exon e_start="37953" e_stop="37706"/>
          <exon e_start="36628" e_stop="36497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGGTAACGTGTCGTGATATACTTTCTTTTTTAGTCTGTCCTAAGAAAGAACAACATTTCTTTATATATTTAGAAAAATTTTAACTTTGAACTTCATATATCATAAACTCTTGATGATATAATTTATGGCAGACACACATCTTAACTAAATTAAGGTCTTATTACCCCTGAATTTATTTTTTTATAATTTTATACATCTTTTGTCTTACGAAGCACACACCATGACTCCACGCAATTATGACGCGTGGGAGATATTTGGATACCACGTTAGCAAAAAAGGTGCAAAAAATTACAAAAAAAAAATAAATTCAGGGAAGGTAATAGAACCTTACAATAGTTAAGGTGTCTCTGAGATTTTCGTCAATAGTCTAGGGAGATACTTGTGCATTTTCCCTAATTTCATAGTCACAAAAATGTCATTTTTGACAACACCATAAGAAATTCATATTCTTTAGCAGTGACGTGACATGTTTCAGACCACAAATTTTAGTCAAATCAAATATCATCACATCAATTGAGACGAAATGAGTATATCATTTTAAGAGGTCCTAAATGACTATGAGTTGACCCTACACTTAATTAGTTGTATCTACCTTATTTTTAATGGTTAACTAATGTTGTGATTTTTAATGTTGTCATGCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAGGTAAGATCAAAAGTTCTTTTAGTTTACGATCTGGTCTGGAACAAGTTATTCTAGCATAACTTATCTCACTATATATATTATTTTTACATATAGGGGATAACTTATCATATCACTATGGTATAAGTAGTGGGACAAGTCATCCAAACAAGACACCAAAATTTTATTCCTAAACTATTTTTTTATCGCATGACTATTTATTTTTTATCCGTCACATGAAACGATTCCTAGAGGTATATAAATTGAGCTTGACTTTTGGAGCAACGATAATATAATCTTCATTTGATTTATGGATCACGAGTTAGAGCTCTAGAACCAGTCATTGAAACTTGCGTCAAGATAGACGGACTACATTTAACATGTCTGTCTACCTATAGGGTATAACCCTATGCAAGTGTAGGGATATTTCGTGCATCGAATTGTCTCTTTTACCTCGAAATAAATTAAGTTAGTGTCTTGAAGTAACGATAAGTTCGTCTTCATGTGATTTATAGGTCAAGATGTTAAGTTATAGAATCATCTTTTCACCTTTACATCAAAACAGGTTTTGTATAAACATCCTTTAGGATGGGACCCTTCCTCAAACCTGATGTAAACTCACAATACTTCGTACACCGAACTGTCTTCTAAACATATAAATTATACTCCCCCTATCAATTTTTCCATTATATATTCTTCTTGCATGGTTATCACTATAAGCAAAAAGCTACAATCCCTAGTGACCATGTACTAGATATAATATTTCATGATTTGATAGTGTTATATTATACTATAAGGGTCATAATCATTATACTCTCTATTTTAATCTATTTGTAATCTTTTTCCTTTTCAGCTAAAAAAAAAAGTGTTTTATTTTTTTGATAATTTTTTAGCGTCAACTTTATATATGATATATTTAAGATTACAAGGTGAAAAGACATTCTAATACCTTTTACATGGTGTATCTTTTAATTTAAAACTACATAATATAAAAAATATTTTTTATTTTTTAAAATTCCTTATTATGTCAAAACCAGATAAATAAATTAAAACGATTAATATATAATTCTTTTTAACATTTTGTGTTTGAATTTTAAACAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTT</genome_strand>
        <mrna_strand>TTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236621" ref_strand="+" ref_description="SGN-E236621 [cLED-13-B24]">
      <seq>ttcttttcaatttttatttttaaaaaaatgtctccatcattggcaaaatctagtgaaaaattgaagaatgaaattgaagattatcataaaggagtaaagtatttgcatgaaagtggaattcaaaaagttccaaagaaatacatttttcctatttcagaaagaccaaattgttatactataaatgaaaatccacaagttgctagcaaacacaatcttaagttgcctgtcatagatttttctcaactctatggtcctaatagagctcaagttcttgattcactctcctatgcctgtgaaaactatggattttttcagttgacaaaccatgggattccagaagaggtaataaaaaatatggtggatgttggaggaaggttttttgatcttccattagtagaaagggaaaagtacatgacaaaagacatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="39208" stop="37539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38908" g_stop="38594" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38593" i_stop="37954" i_length="640">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37953" g_stop="37839" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="430" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E236621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38908" e_stop="38594"/>
          <exon e_start="37953" e_stop="37839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGGTAACGTGTCGTGATATACTTTCTTTTTTAGTCTGTCCTAAGAAAGAACAACATTTCTTTATATATTTAGAAAAATTTTAACTTTGAACTTCATATATCATAAACTCTTGATGATATAATTTATGGCAGACACACATCTTAACTAAATTAAGGTCTTATTACCCCTGAATTTATTTTTTTATAATTTTATACATCTTTTGTCTTACGAAGCACACACCATGACTCCACGCAATTATGACGCGTGGGAGATATTTGGATACCACGTTAGCAAAAAAGGTGCAAAAAATTACAAAAAAAAAATAAATTCAGGGAAGGTAATAGAACCTTACAATAGTTAAGGTGTCTCTGAGATTTTCGTCAATAGTCTAGGGAGATACTTGTGCATTTTCCCTAATTTCATAGTCACAAAAATGTCATTTTTGACAACACCATAAGAAATTCATATTCTTTAGCAGTGACGTGACATGTTTCAGACCACAAATTTTAGTCAAATCAAATATCATCACATCAATTGAGACGAAATGAGTATATCATTTTAAGAGGTCCTAAATGACTATGAGTTGACCCTACACTTAATTAGTTGTATCTACCTTATTTTTAATGGTTAACTAATGTTGTGATTTTTAATGTTGTCATGCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAA</genome_strand>
        <mrna_strand>TTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377133" ref_strand="-" ref_description="SGN-E377133 [TUS-21-E13]">
      <seq>ctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43908" g_stop="44026" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.737"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44802" i_length="776">
            <donor d_prob="0.900" d_score="0.79"/>
            <acceptor a_prob="0.501" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44803" g_stop="44817" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="133" r_length="14" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44818" i_stop="45415" i_length="598">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45416" g_stop="45974" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="690" r_length="557" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E377133" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377133" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43908" e_stop="44026"/>
          <exon e_start="44803" e_stop="44817"/>
          <exon e_start="45416" e_stop="45974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGA</genome_strand>
        <mrna_strand>CTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTGTTTCTAATAGTGTTATAAATCGTAAAATAATAATAATATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TAGGAAGAACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-GTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550212" ref_strand="-" ref_description="SGN-E550212 [TUS-5-F26]">
      <seq>gcccccccccgagttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43914" g_stop="44026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="124" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="163" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="173" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="729" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550212" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550212" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43914" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>GCCCCCCCCCGAGTTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389553" ref_strand="-" ref_description="SGN-E389553 [TUS-4-G14](-)">
      <seq>aatgagtaattttttatattttattccataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaacgaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43919" g_stop="44026" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="45398" i_length="1372">
            <donor d_prob="0.900" d_score="0.79"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45399" g_stop="45975" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="681" r_length="573" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E389553" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389553" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43919" e_stop="44026"/>
          <exon e_start="45399" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>AATGAGTAATTTTTTATATTTTATTCCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTGTTTCTAATAGTGTTATAAATCGTAAAATAATAATAATATTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGA-ACGAA-C-ATAA-ATGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550127" ref_strand="-" ref_description="SGN-E550127 [TUS-5-G26](-)">
      <seq>atgagtaattttttatattttatgtcataattttttcattaattcatggttgtgcaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggttttgataagaaaaagaaaaggacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43920" g_stop="44026" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44802" i_length="776">
            <donor d_prob="0.900" d_score="0.79"/>
            <acceptor a_prob="0.501" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44803" g_stop="44817" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="121" r_length="14" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44818" i_stop="45415" i_length="598">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45416" g_stop="45975" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="679" r_length="558" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550127" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550127" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43920" e_stop="44026"/>
          <exon e_start="44803" e_stop="44817"/>
          <exon e_start="45416" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>ATGAGTAATTTTTTATATTTTATGTCATAATTTTTTCATTAATTCATGGTTGTGCAAATCTTTGTTTCTAATAGTGTTATAAATCGTAAAATAATAATAATATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TAGGAAGAACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-GTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTTGATAAGAAAAAGAAAAGGACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550201" ref_strand="-" ref_description="SGN-E550201 [TUS-5-H25]">
      <seq>ggccccccctcgagttttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggtngagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="28076" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43922" g_stop="44026" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44348" i_length="322">
            <donor d_prob="0.900" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.63"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44349" g_stop="44409" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="166" r_length="61" r_score="0.656"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.67"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="176" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="732" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550201" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550201" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43922" e_stop="44026"/>
          <exon e_start="44349" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTC-ATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>GGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTNG..................................................................................................................................................................................................................................................................................................................................AG-AAAATCTTTGTTTCTAATAGTGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550335" ref_strand="-" ref_description="SGN-E550335 [TUS-5-H36]">
      <seq>ttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggtngagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagattctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43924" g_stop="44026" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="111" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="150" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="160" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="715" r_length="555" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550335" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550335" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43924" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTNGAGAA--AATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGATTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGG-TTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550322" ref_strand="-" ref_description="SGN-E550322 [TUS-5-G26]">
      <seq>gttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgatctggtgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43926" g_stop="44026" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="112" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="151" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="161" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45984" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="726" r_length="565" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550322" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550322" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43926" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATAGAGAGAGA</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATCTGGTGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550140" ref_strand="-" ref_description="SGN-E550140 [TUS-5-H36](-)">
      <seq>gtaattttttatatttttggtctaattttttgttaattcatggttgataacatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttngagtaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43926" g_stop="44026" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44802" i_length="776">
            <donor d_prob="0.900" d_score="0.79"/>
            <acceptor a_prob="0.501" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44803" g_stop="44817" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="115" r_length="14" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44818" i_stop="45415" i_length="598">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45416" g_stop="45975" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="673" r_length="558" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550140" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43926" e_stop="44026"/>
          <exon e_start="44803" e_stop="44817"/>
          <exon e_start="45416" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTT-GAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>GTAATTTTTTATATTTTTGGTCTAATTTTTTGTTAATTCATGGTTGATAACATCTTTGTTTCTAATAGTGTTATAAATCGTAAAATAATAATAATATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TAGGAAGAACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-GTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTNGAGT-AATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550484" ref_strand="-" ref_description="SGN-E550484 [TUS-5-F12]">
      <seq>tttttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43926" g_stop="44026" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="112" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="151" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="161" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="717" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550484" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43926" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549941" ref_strand="-" ref_description="SGN-E549941 [TUS-5-J18]">
      <seq>tttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttgatggcataatttttcattaatcatnggtcgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagatattatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43927" g_stop="44026" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="108" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="147" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="157" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="713" r_length="556" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E549941" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549941" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43927" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTGATGGCATAATTTTTCATTAATCATNGGTCGAGAA--AATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATATTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550211" ref_strand="-" ref_description="SGN-E550211 [TUS-5-G12]">
      <seq>ttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="109" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="148" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="158" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="713" r_length="555" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550211" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGG-TTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550464" ref_strand="-" ref_description="SGN-E550464 [TUS-5-I12]">
      <seq>ttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatatcttatggcataatttttcattaattcatggtagagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtancgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="108" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="147" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="157" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="713" r_length="556" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550464" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550464" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATCTTATGGCATAATTTTTCATTAATTCATGGTAGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTANCGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390013" ref_strand="-" ref_description="SGN-E390013 [TUS-4-G14]">
      <seq>ttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatcttngtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="109" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="148" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="158" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="714" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E390013" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390013" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTNG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AACA-TAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550025" ref_strand="-" ref_description="SGN-E550025 [TUS-5-N12]">
      <seq>ttttttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="109" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="148" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="158" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="714" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550025" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396039" ref_strand="-" ref_description="SGN-E396039 [TUS-18-L22]">
      <seq>tttttttttttgaattagctccaagaaaaaatgagtaaattttttttatttttatggcataattttttcattaattcatggtggagaaaatctttgtttttaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="106" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="145" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="155" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="711" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396039" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396039" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGAATTAGCTCCAAGAAAAAATGAGTAAATTTTTTTTATTTTTATGGCATAATTTTTTCATTAATTCATGGTGGAGAA--AATCTTTG..........................................................................................................TTTTTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396056" ref_strand="-" ref_description="SGN-E396056 [TUS-18-N20]">
      <seq>ttttttttttatgaattagctcaaagaaaaaatgagtaaatttttattattttatggcataattttttcattaattcatgggtgagaaaatttttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43929" g_stop="44026" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.643"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="106" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="145" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="155" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="711" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396056" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43929" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTATGAATTAGCTCAAAGAAAAAATGAGTAAATTTTTATTATTTTATGGCATAATTTTTTCATTAATTCATGGGTGAGAA--AATTTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550207" ref_strand="-" ref_description="SGN-E550207 [TUS-5-H27]">
      <seq>tttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggtgnagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43931" g_stop="44026" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="104" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="143" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="153" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="709" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550207" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550207" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43931" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTGNAGAA--AATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550065" ref_strand="-" ref_description="SGN-E550065 [TUS-5-F31]">
      <seq>tttttttcttatgaatcagctcaatgaaaaatgagtaaattttttatatttcatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaagaaggagggtttgaataagaaaaagaaaagaacagaaagagagagaaggagaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45975" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="710" r_length="556" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E550065" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</genome_strand>
        <mrna_strand>TTTTTTTCTTATGAATCAGCTCAATGAAAAATGAGTAAATTTTTTATATTTCATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396057" ref_strand="-" ref_description="SGN-E396057 [TUS-18-N22](-)">
      <seq>ttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttaaaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaattatatgctaattagggtaaaaaaaagaaggtttgaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45939" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="674" r_length="520" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396057" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396057" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAAAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAAAAAGAAGGTTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396055" ref_strand="-" ref_description="SGN-E396055 [TUS-18-N20](-)">
      <seq>ttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtggggtttatgttaataagtctaattaccctgggggttaaaaaaaggaacccttgagtaaattagtgggttattatttccatctttttattcttaattatatgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45907" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="647" r_length="493" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396055" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396055" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGT-GAGTTTATGTTAATAAGTCTAATTAC-TTGGGGGTT-AAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATC-TTTTATTCTTAATTATATGCTAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGGTTTATGTTAATAAGTCTAATTACCCTGGGGGTTAAAAAAAGGAACCCTTGAGTAAATTAGTGGGTTATTATTTCCATCTTTTTATTCTTAATTATATGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398551" ref_strand="-" ref_description="SGN-E398551 [TUS-18-N18](-)">
      <seq>ttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattattgggttattattccatcttttattcttaattatatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45905" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="640" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E398551" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTATTGGGTTATTATT-CCATCTTTTATTCTTAATTATATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396038" ref_strand="-" ref_description="SGN-E396038 [TUS-18-L22](-)">
      <seq>ttttttttttattatttaactctatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45895" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="630" r_length="476" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396038" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAA</genome_strand>
        <mrna_strand>TTTTTTTTTTATTATTTAACTCTATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396069" ref_strand="-" ref_description="SGN-E396069 [TUS-18-P18](-)">
      <seq>ttttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccggtgggggtcggatttctttacacgttttaagggacgttttggactattcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44026" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="105" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="154" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45790" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="525" r_length="371" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E396069" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCGGTGGGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377132" ref_strand="-" ref_description="SGN-E377132 [TUS-21-E13](-)">
      <seq>tttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttctttacacgttttaagggacgttttggactattcctactttaattataaagttagtgggtttatgttaataagtctaattacctgggggttaaaagaggtaaccttgagtaaattagtgggttattattccatcttttattcttaaatatatgctaattagggtaaaagaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43934" g_stop="44026" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="104" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="143" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="153" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45924" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="658" r_length="505" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E377132" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377132" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43934" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAA-TATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAG</genome_strand>
        <mrna_strand>TTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAATTACCTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATT-CCATCTTTTATTCTTAAATATATGCTAATTAGGGTAAAAGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374998" ref_strand="-" ref_description="SGN-E374998 [TUS-36-E19](-)">
      <seq>tttttttttatgaattagctcaatgaaaaatgagtaaattttttatattttatggcataattttttcattaattcatggttgagaaaatctttgtttctaatagtgttataaatcgtaaaataataataatatttaagtaggaagaacataaatgtaacgacctgtttagtcgttttgagtagcagattttatttttggaaaaacaggttgagacgacggaacccacgacggaccgtcatgagcacgatggaccgtcgaggagtctcgtttcaaaacacttagaaattctgaaattgggtactaaaaatcgactctctgaacttcgtaacggaatggcacgacggaccgtcacgggcgtgacggaccgtcacagactctttggtggaaattgagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacgacgggccatcacaggttgcgtaatcccagtctgggtcggatttcttttacacgttttaagggacgttatgtactattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="41253" stop="46084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43934" g_stop="44026" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106">
            <donor d_prob="0.900" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44133" g_stop="44142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="104" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44371" g_stop="44409" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="143" r_length="39" r_score="0.744"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44641" g_stop="44652" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="153" r_length="10" r_score="0.750"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45420" g_stop="45784" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="519" r_length="366" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E374998" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43934" e_stop="44026"/>
          <exon e_start="44133" e_stop="44142"/>
          <exon e_start="44371" e_stop="44409"/>
          <exon e_start="44641" e_stop="44652"/>
          <exon e_start="45420" e_stop="45784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAAT-TTAGATATCTTTTTTATTAGACAGAGCCCTTAAAAATTAATACTAATTAAGAATATATGTTAGGTTTAATTACTTCATTTGTTTTCTTTTAGTGGGCGGATTTAATTAACTTTATAATAGGTTAGTTCATCCACTATGAATTTGTTAAAGTTTTCAACTTAAATAAAAATATTGACGAAATCAGAATTTTAAATTTATTGATTTTGAATTTTTGAAAAAAAAGTAATTTATCAGGTGCTACACAAATTATTTATATAAATTAATTAAAATTGTAAATATAAATGTAGAATATCTGGTCAAAACTACTAAATTTTACGAAATGTATAAGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAA-TATGAGTCCAAGGCAATAGCATCTGAAGGGCCTAAGAAATTTGAGATTCAAATTTCTGAATTTTGATTATATATTTGAAAGTTATGTTAATATAATTAACAATTTAAAAAACTAACTAATATAAGAATAAATCCTCCCAAAAAAAAAAAAACCTTGGCTAATTTTTAAAATTTCAAAATATGTTATTTTAATTGAGACGGAGCGAATAATATAATGACTATCAGCTATTTATTGCTAGTAATAATAAAGTGAGCTAAACTCGTTTTCAATTCAATTTTTTTTTTCTGGTTTAAATAAGCTGCTGATCCTGATATTAGTTTTATTTTCTATTAATTATGGAAAAAATAATTACTATTTTAACTGATTATGGATGCTAAAATCCAATGATTACGAAAAAGGATAGTGACAACAAAATTGAAAATAAATTGAAGCAATAAGACGATAAGAATTAGCAACGCAATAAAATTAATAATTATAAAACAATTACTACATCATAAACGAGCTTTAGTGATAATTTATTAGCAATTACCGTTAAAAATATAGTATTTTTAATAGCAACTAGCATTTTTTTTATATATATCTCTAAAGACTTTATTGATATTAAATTTAAAGACACTTAAAACTTATATCAATAAATTACAATTTTAATTAATATGTCTATTTACTGCCGTTAATTTTTTATTTTGTTTGGGTAATGAGTAAATATCTTATTAATGGGTCAAGTTTCATTGAATACAATATGGAGAAATATTATGTGAGTGTTATGTGACACAAATATTTTATTTTTTATATATATAATTCAGATGAGAGGTGAACTTTACATAACATTATTATTACTATTATAATATTGAGTCGTTAATATTTGATGTGACATTTACACTGGTTATGGTGACTTCTTCTTGTTATAGTAATTTAAGCTAAAATTCGACATTAACACATCGATATAGCTGACGAGTAAATACTTTAATTTTGAAATGCACATTTAAATACTTCAGTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTC-TTTACACGTTTTAAGGGACGTTTTGGACTATTCC</genome_strand>
        <mrna_strand>TTTTTTTTTATGAATTAGCTCAATGAAAAATGAGTAAATTTTTTATATTTTATGGCATAATTTTTTCATTAATTCATGGTTGAGAAAATCTTTG..........................................................................................................TTTCTAATAG....................................................................................................................................................................................................................................TGTTATAAA-TCGTAAAATAATAATAATATTTAAGTAGGA.......................................................................................................................................................................................................................................AG-AA-CATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGACCTGTTTAGTCGTTTTGAGTAGCAGATTTTATTTTTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGATGGACCGTCGAGGAGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTCGTAACGGAATGGCACGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCATCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTTACACGTTTTAAGGGACGTTATGTACTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46274" stop="45120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45974" g_stop="45417" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45974" e_stop="45417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGATCGTTACAAAT</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46275" stop="41253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45975" g_stop="45419" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45975" e_stop="45419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGATCGTTACAA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46275" stop="41253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45975" g_stop="45419" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45975" e_stop="45419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGATCGTTACAA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46274" stop="45130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45974" g_stop="45430" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45974" e_stop="45430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46274" stop="45203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45974" g_stop="45503" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45974" e_stop="45503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46275" stop="45264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45975" g_stop="45522" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45975" e_stop="45522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTAT-ATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="45734" stop="46738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46034" g_stop="46438" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46034" e_stop="46438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAACAAAGAAGGCTTGATGAATTGATAGAAGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATATAATTAGTGGGACGGGTGTCATGAACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTA-GATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="46755" stop="55135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46810" g_stop="46866" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="47067" i_length="201">
            <donor d_prob="0.000" d_score="0.79"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47068" g_stop="47487" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="481" r_length="422" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46810" e_stop="46866"/>
          <exon e_start="47068" e_stop="47487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACCGACACATAGAATTAGTGGATCGG-GTGTCACGAACCGACAC-ATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGAATCGGGTATCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAATCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTATTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATT-AGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTA.........................................................................................................................................................................................................ATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="48818" stop="47786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48518" g_stop="48086" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48518" e_stop="48086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTTCTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCTCTTGCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="47853" stop="49006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48153" g_stop="48706" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48153" e_stop="48706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGAAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGATTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="49176" stop="47857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48876" g_stop="48157" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48876" e_stop="48157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGAACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATGTGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCT-TACTACTTTCTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="49173" stop="47910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48873" g_stop="48210" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48873" e_stop="48210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGAACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATGTGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="48480" stop="50524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48780" g_stop="48966" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48967" i_stop="49710" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49711" g_stop="50224" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48780" e_stop="48966"/>
          <exon e_start="49711" e_stop="50224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCACATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTTCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTCTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACCTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGTTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAACCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGGGGACGCGGTGGTCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAGGTGTGAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCAGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTTCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCGATTCGTGTTTCTACACCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGTTATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTTGGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="49897" stop="48739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49597" g_stop="49039" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49597" e_stop="49039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCTGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCACACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGACCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCCCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGAACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="50504" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50207" g_stop="49446" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50207" e_stop="49446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="50104" stop="49178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49804" g_stop="49474" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49804" e_stop="49474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="50504" stop="49247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50207" g_stop="49547" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50207" e_stop="49547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="50576" stop="49318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50276" g_stop="49618" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50276" e_stop="49618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="51025" stop="49747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50725" g_stop="50046" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50725" e_stop="50046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="51096" stop="49784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50796" g_stop="50084" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50796" e_stop="50084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="51096" stop="49901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50796" g_stop="50201" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50796" e_stop="50201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="51096" stop="49971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50796" g_stop="50271" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50796" e_stop="50271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="51025" stop="50067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50725" g_stop="50367" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50725" e_stop="50367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332463" ref_strand="+" ref_description="SGN-E332463 [cTOD-17-N15]">
      <seq>atccccaccatgtaattttcacaaaaccaaaacacatactttcccttacaacatcttcaaaaataccaactaatagtagtactaaaattctcatatcacaaaaaaaacttgtacacacttttttcaacaaaaaatgtaacaaaaacattatttctcctatggcatcatcatcaattaatcaatttgatgatgaatttcaccctgaccctacccttacaaatgatgatctcaagcctacgtcgatcgatcaacgtaacttttcaggttgggaaatgtctagtctatggattggactagttgttggtgtgccctcatattacctagctggtagcctagttgatcttggcatgtcatggtggcaaggtattgcaattgttgtattagctaatttaataactttactaccacttgtattaataggtcaaccaggcacaaaatttggcatatcatttcctgttttagctagatcatcatttggcattagaggtgcacatattcctacactacttagagctttagttggttgtggttggtatggtattgaaacatggattggtggtgaagcaattttcttgttgttaccaaaagttgttaaggattcacatttgtcacaatcaatatcttggcttggcacatcacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="59586" stop="58344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59286" g_stop="58644" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E332463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59286" e_stop="58644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCTGT</genome_strand>
        <mrna_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332469" ref_strand="+" ref_description="SGN-E332469 [cTOD-17-P17]">
      <seq>atccccaccatgtaattttcacaaaaccaaaacacatactttcccttacaacatcttcaaaaataccaactaatagtagtactaaaattctcatatcacaaaaaaaacttgtacacacttttttcaacaaaaaatgtaacaaaaacattatttctcctatggcatcatcatcaattaatcaatttgatgatgaatttcaccctgaccctacccttacaaatgatgatctcaagcctacgtcgatcgatcaacgtaacttttcaggttgggaaatgtctagtctatggattggactagttgttggtgtgccctcatattacctagctggtagcctagttgatcttggcatgtcatggtggcaaggtattgcaattgttgtattagctaatttaataactttactaccacttgtattaataggtcaaccaggcacaaaatttggcatatcatttcctgttttagctagatcatcatttggcattagaggtgcacatattcctacactacttagagctttagttggttgtggttggtatggtattgaaacatggattggtggtgaagcaattttcttgttgttaccaaaagttgttaaggattcacatttgtcacaatcaatatcttggcttggcacatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="-" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="59586" stop="58346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59286" g_stop="58646" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="-" ref_id="SGN-E332469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59286" e_stop="58646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCT</genome_strand>
        <mrna_strand>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392748" ref_strand="+" ref_description="SGN-E392748 [TUS-36-B6]">
      <seq>cagaatgatactccaattagcaacaacaagtacactaacttcaatagagcacctcaaaagcttagtcagtcccaagaactttgggtggatcgacttcattcagatcgcaaaagtagtgaatcagagggtgaaaatagttcctccgacggaattacttcttctgttgtagtggattacttggctagaatacaattgcttgagaacaagcttggtgaagcattagaagccaataagaagtacaaaattcagcttcaacggttcaagactgaggaacgtagaggacattcaccggcttccaagaaatcagaaggggacaacgaaatggtgaaaaggttcgaacatacaaaggctttactagaagcagaactaaaagacattcgagaacgatactttcaaatgagtcttaagtatgctgaagtagaagcacaaagagaggatcttgttatgaaactgaaggcagttaagagcggaaagagatggttctcttgaatcacgactagcattctcgcggagcattcatcctaaccttaggtaaaccaatccacattttcacattatgttgctcggactcttcaacaaatgtctcctgatacacgttagatcttccaaaagtactacgtatattttttgagaatcgatctaacacaggcgcaacaacatttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="68956" stop="71072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69256" g_stop="69381" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="69652" i_length="271">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69653" g_stop="69783" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="257" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69784" i_stop="70363" i_length="580">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70364" g_stop="70772" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="666" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E392748" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69256" e_stop="69381"/>
          <exon e_start="69653" e_stop="69783"/>
          <exon e_start="70364" e_stop="70772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAGGTACCCTTTATTCCCTTCTATTCATTTTTCACCTTTGAAGCAGTATGCTGCTCAGACTCTCCAAAAATGTTGCCACACCTGTATCGTATCCTTCGGACAGGCACTACTTTTGGAGGATCGAACAAGCACCTGACAACATTTTTGAAGAGTCTGAGCAACATAGTGAAGCACAATATATCACCAATAGGCCTAGCTGGTCTTTTGAGTTTCAAGTTTTCCCTGTCAAATGCTTAACTCCTTTTTGCTCTTTTAAAACACTTTGTTCATCCAGGGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACGGTATGCTTCAATATCTTGGAATTTAAATCTGTCGCATTTATTAGTTTTTTCTTGTTGCTCGCGGGGGTGCATCATCTACTTCAAATACAAAAAACAAAAAAGAAAGTCATTGTATGTATAGTGTGATTTTCAGGTGAAGTAGCTTCATTGAGTTCGGATGAACCCTCTTCCACCCTCTAGCTGTGTTTCTGCAGACAGGACCTTAAAAAGGCTATGCTTAGCAGCAAATAGCTATGAAAACATACTGAACTACGATAATCTACATGATATGTTATATAAGCTATCGGAATATTTATCAACGACCCATCATCTCAATATAGAACTTAACAACCTTACTTCAACATGTTATGTTCTATAGGCTAGCACCATCTTATCCTTGAGCTCTAAGGAGACAAGAAACAAAGTCTGGTTGATGAAACAGTTGATTCCTTATAAGGTCACTCAACTTAATGAAATTACCTAGTAAAGTCATTTAATACAACACATTCACTTAGCAAAGATAATAGAACACCTGCATTGTTTAATTATGTGGAACGAGTAATGTATGATGTTCGAGTCTTTTGAGCTGTTATTCTTGTAGGTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGC</genome_strand>
        <mrna_strand>CAGAATGATACTCCAATTAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAG...............................................................................................................................................................................................................................................................................GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240500" ref_strand="+" ref_description="SGN-E240500 [cLED-21-H2]">
      <seq>agaatgatactccaaagagcaacaacaagtacactaacttcaatagagcacctcaaaagcttagtcagtcccaagaactttgggtggatcgacttcattcagatcgcaaaagtagtgaatcagagggtgaaaatagttcctccgacggaattacttcttctgttgtagtggattacttggctagaatacaattgcttgagaacaagcttggtgaagcattagaagccaataagaagtacaaaattcagcttcaacggttcaagactgaggaacgtagaggacattcaccggcttccaagaaatcagaaggggacaacgaaatggtgaaaaggttcgaacatacaaaggctttactagaagcagaactaaaagacattcgagaacgatactttcaaatgagtcttaagtatgctgaagtagaagcacaaagagaggatcttgttatgaaactgaaggcagttaagagcggaaagagatggttctcttgaatcacgactagcattctcgcggagcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="68957" stop="70925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69257" g_stop="69381" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="69652" i_length="271">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69653" g_stop="69783" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="256" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69784" i_stop="70363" i_length="580">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70364" g_stop="70625" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="518" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E240500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69257" e_stop="69381"/>
          <exon e_start="69653" e_stop="69783"/>
          <exon e_start="70364" e_stop="70625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAGGTACCCTTTATTCCCTTCTATTCATTTTTCACCTTTGAAGCAGTATGCTGCTCAGACTCTCCAAAAATGTTGCCACACCTGTATCGTATCCTTCGGACAGGCACTACTTTTGGAGGATCGAACAAGCACCTGACAACATTTTTGAAGAGTCTGAGCAACATAGTGAAGCACAATATATCACCAATAGGCCTAGCTGGTCTTTTGAGTTTCAAGTTTTCCCTGTCAAATGCTTAACTCCTTTTTGCTCTTTTAAAACACTTTGTTCATCCAGGGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACGGTATGCTTCAATATCTTGGAATTTAAATCTGTCGCATTTATTAGTTTTTTCTTGTTGCTCGCGGGGGTGCATCATCTACTTCAAATACAAAAAACAAAAAAGAAAGTCATTGTATGTATAGTGTGATTTTCAGGTGAAGTAGCTTCATTGAGTTCGGATGAACCCTCTTCCACCCTCTAGCTGTGTTTCTGCAGACAGGACCTTAAAAAGGCTATGCTTAGCAGCAAATAGCTATGAAAACATACTGAACTACGATAATCTACATGATATGTTATATAAGCTATCGGAATATTTATCAACGACCCATCATCTCAATATAGAACTTAACAACCTTACTTCAACATGTTATGTTCTATAGGCTAGCACCATCTTATCCTTGAGCTCTAAGGAGACAAGAAACAAAGTCTGGTTGATGAAACAGTTGATTCCTTATAAGGTCACTCAACTTAATGAAATTACCTAGTAAAGTCATTTAATACAACACATTCACTTAGCAAAGATAATAGAACACCTGCATTGTTTAATTATGTGGAACGAGTAATGTATGATGTTCGAGTCTTTTGAGCTGTTATTCTTGTAGGTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCA</genome_strand>
        <mrna_strand>AGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAG...............................................................................................................................................................................................................................................................................GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237634" ref_strand="+" ref_description="SGN-E237634 [cLED-19-M5]">
      <seq>atgatcctccaaagagcaacaacatgtacactaacttcaatagagcacctcaaaagcttagtcagtcccaagaactttgggtggatcgacttcattcagatcgcaaaagtagtgaatcatagggtgaaaatagttcctccgacggaattacttcttctgttgtaggggattacttggctagaatacaattgcttgagaacaagcttggtgaagcattagaagccaataagaagcacaaaattcagcttcaacggttcaagactgaggaacgtagaggacattcaccggcttccaagaaatcataaggggacaacgaaatggtgagaaggttcgaacatacaaaggctttactagaagcagaactaaaagacattcgagaacgatactttcaaatgagtcttatgtatgctgaagtagaagcacaaagagaggatcttgttatgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="68960" stop="70859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69260" g_stop="69381" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69382" i_stop="69652" i_length="271">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69653" g_stop="69783" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69784" i_stop="70363" i_length="580">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70364" g_stop="70559" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="449" r_length="196" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E237634" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69260" e_stop="69381"/>
          <exon e_start="69653" e_stop="69783"/>
          <exon e_start="70364" e_stop="70559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAGGTACCCTTTATTCCCTTCTATTCATTTTTCACCTTTGAAGCAGTATGCTGCTCAGACTCTCCAAAAATGTTGCCACACCTGTATCGTATCCTTCGGACAGGCACTACTTTTGGAGGATCGAACAAGCACCTGACAACATTTTTGAAGAGTCTGAGCAACATAGTGAAGCACAATATATCACCAATAGGCCTAGCTGGTCTTTTGAGTTTCAAGTTTTCCCTGTCAAATGCTTAACTCCTTTTTGCTCTTTTAAAACACTTTGTTCATCCAGGGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACGGTATGCTTCAATATCTTGGAATTTAAATCTGTCGCATTTATTAGTTTTTTCTTGTTGCTCGCGGGGGTGCATCATCTACTTCAAATACAAAAAACAAAAAAGAAAGTCATTGTATGTATAGTGTGATTTTCAGGTGAAGTAGCTTCATTGAGTTCGGATGAACCCTCTTCCACCCTCTAGCTGTGTTTCTGCAGACAGGACCTTAAAAAGGCTATGCTTAGCAGCAAATAGCTATGAAAACATACTGAACTACGATAATCTACATGATATGTTATATAAGCTATCGGAATATTTATCAACGACCCATCATCTCAATATAGAACTTAACAACCTTACTTCAACATGTTATGTTCTATAGGCTAGCACCATCTTATCCTTGAGCTCTAAGGAGACAAGAAACAAAGTCTGGTTGATGAAACAGTTGATTCCTTATAAGGTCACTCAACTTAATGAAATTACCTAGTAAAGTCATTTAATACAACACATTCACTTAGCAAAGATAATAGAACACCTGCATTGTTTAATTATGTGGAACGAGTAATGTATGATGTTCGAGTCTTTTGAGCTGTTATTCTTGTAGGTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTG</genome_strand>
        <mrna_strand>ATGATCCTCCAAAGAGCAACAACATGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCATAG...............................................................................................................................................................................................................................................................................GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGGGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGCACAAAATTCAGCTTCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCATAAGGGGACAACGAAATGGTGAGAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTATGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368168" ref_strand="+" ref_description="SGN-E368168 [TUS-22-K18](-)">
      <seq>ttttaagtatgctgaagtaaaagcacaaaaaaaggatcttgttatgaaactgaaggcagttaagagcggaaaaagatggttttcttgaatcacgaatagcattctcgcggagcattcatcctaaccttaggtaaaccaatccacattttcacattatgttgctcggacttttcaacaaatgtctcctgatacacgttagattttccaaaagtactacgtatattttttgaaaatcgatttaacacaggcgcaacaacatttttgcagagttacgagctatatagtttagcacatatattacccttgtaatttatcctcaaaataactaaaagcaagatatagacaataaaaaattagaaccaaataagattgttatatacaatggcaaggcatagtggatatttttagacaaaaaagtaccccctaacaaaagtgtgatattattttttatgtatagtaaaacaacccagtgacaaagttagaaattttatcaacggtattcaaccgttttcaagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="70207" stop="71329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70508" g_stop="71026" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="556"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E368168" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70508" e_stop="71026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTCTAGCACATATATTACCATTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAGAAAGTACACACTAACAAAAGTGTGATATTATTCTCTATGTATAGTAAAACAACACAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTCTTCAAGATTA</genome_strand>
        <mrna_strand>TTTTAAGTATGCTGAAGTAAAAGCACAAAAAAAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAAAGATGGTTTTCTTGAATCACGAATAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTTTTCAACAAATGTCTCCTGATACACGTTAGATTTTCCAAAAGTACTACGTATATTTTTTGAAAATCGATTTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTTTAGCACATATATTACCCTTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAAAAAGTACCCCCTAACAAAAGTGTGATATTATTTTTTATGTATAGTAAAACAACCCAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTTTTCAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352038" ref_strand="+" ref_description="SGN-E352038 [cTOS-13-B15]">
      <seq>taacttaatcaaaccctctaagtgtagttttctttgttttttgtaattttcgttcgatggatgaagaggaagaactactgagtaaacagaaaagaaagcgtcagaaatgatggtcttggtgatggtattagatgggaactactatcattcatgaaaatattagtcttgattagtgatcatgaagatattaatcttgattagtcccatggtgtaaggtaattaagggcaacttctatatcctttggcatttgagtctcttgataggctctatctctctatatataagaatttaaatttatggtaaaaaagactagcattttatgctaattatttagtcctttacttattatttcttatttcagtatttttcttgtgtttgtaagctacaaatagttaatgaatgagtgttttgatgtattatgcctaatatggccagaataataatggttttagtgatgtattaatgcttgggtgtgttttttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="73053" stop="74138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73353" g_stop="73839" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E352038" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73353" e_stop="73839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAC</genome_strand>
        <mrna_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357312" ref_strand="+" ref_description="SGN-E357312 [cTOS-23-C22]">
      <seq>taacttaatcaaaccctctaagtgtagttttctttgttttttgtaattttcgttcgatggatgaagaggaagaactactgagtaaacagaaaagaaagcgtcagaaatgatggtcttggtgatggtattagatgggaactactatcattcatgaaaatattagtcttgattagtgatcatgaagatattaatcttgattagtcccatggtgtaaggtaattaagggcaacttctatatcctttggcatttgagtctcttgataggctctatctctctatatataagaatttaaatttatggtaaaaaagactagcattttatgctaattatttagtcctttacttattatttcttatttcagtatttttcttgtgtttgtaagctacaaatagttaatgaatgagtgttttgatgtattatgcctaatatggccagaataataatggttttagtgatgtattaatgcttgggtgtgttttttgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="73053" stop="74138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73353" g_stop="73839" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E357312" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73353" e_stop="73839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAC</genome_strand>
        <mrna_strand>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350763" ref_strand="+" ref_description="SGN-E350763 [cTOS-7-N23]">
      <seq>ttaatcaaaccctctaagtgtagttttctttgttttttgtaattttcgttcgatggatgaagaggaagaactactgagtaaacagaaaagaaagcgtcagaaatgatggtcttggtgatggtattagatgggaactactatcattcatgaaaatattagtcttgattagtgatcatgaagatattaatcttgattagtcccatggtgtaaggtaattaagggcaacttctatatcctttggcatttgagtctcttgataggctctatctctctatatataagaatttaaatttatggtaaaaaagactagcattttatgctaattatttagtcctttacttattatttcttatttcagtatttttcttgtgtttgtaagctacaaatagttaatgaatgagtgttttgatgtattatgcctaatatggccagaataataatggttttagtgatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="73057" stop="74114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73357" g_stop="73814" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E350763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73357" e_stop="73814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATT</genome_strand>
        <mrna_strand>TTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="75000" stop="76045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75300" g_stop="75743" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75300" e_stop="75743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAATTTTGATAAAAGAATCACATATACCCCTAAATAAATTTTTT-TAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCGTTAAATAAAAGGTATATGTGAGCCATTTTGTAACGATAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGAGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319728" ref_strand="-" ref_description="SGN-E319728 [cTOB-12-O17]">
      <seq>aaatggttaagagatgaaaattttcaagatagggttagaggaagagggatgattattagaggttgggccccacaagtcctaatattatctcatccttccgtcggaggatttttaacacactgtggatggaactcagcactagaagggatctctcgtggggtgccaaagactacttttcctatgtttgccgaacaattttacaatgagaagtttattgtaaatatcttgaagactggagttggagttggtgtttaagtgagtactacctcttggaatgaaaagaagagtggagtattggttagcaaagattaagtcaaaagagccataaatcaattaatggatcaaggattagagggttaagaaagaagaaaaatagcaaaggatttgtcacatatttcaaagaaggctatacaagaagaaggtttttcatacttggatatccaattattggtttaagatgtcatgcatgtactcaaaaataaaggggaaattgaatagatttttaaggaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0017M14-ftFJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0017M14.2" temp_strand="+" temp_description="C09SLe0017M14.2  AC216721.2 htgs_phase:2 submitted_to_sgn_as:gb|AC216721| upload_account_name:spain (1 - 103916)">
        <position start="93854" stop="94960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94154" g_stop="94661" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="536"/>
      <MATCH_line gen_id="C09SLe0017M14.2" gen_strand="+" ref_id="SGN-E319728" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0017M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319728" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94154" e_stop="94661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA</genome_strand>
        <mrna_strand>AAATGGTTAAGAGATGAAAATTTTCAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTTTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGGGTGCCAAAGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATTGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTTAAGTGAGTACTACCTCTTGGAATGAAAAGAAGAGTGGAGTATTGGTTAGCAAAGATTAAGTCAAAAGAGCCATAAATCAATTAATGGATCAAGGATTAGAGGGTTAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTTTTCATACTTGGATATCCAATTATTGGTTTAAGATGTCATGCATGTACTCAAAAATAAAGGGGAAATTGAATAGATTTTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>97</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5035" PGL_stop="5907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5035" e_stop="5727"/>
            <exon e_start="5878" e_stop="5907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5035" e_stop="5727" e_length="693"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5728" i_stop="5877" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5878" e_stop="5907" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5035" stop="5397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5081" stop="5555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5138" stop="5722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5446" stop="5727"/>
              <exon start="5878" stop="5907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCTGATGATGTAGCAGCAGTTCAGAGAATAAGGTTACAAAGTGCTGAGAAAAGTAAGATGACGCGAGACCACAATGGATTTAGGAAGCTACTCATTGTACTTACACGAGCAGGGAAACTTTTTGCACTTCACACAGGTGATGGCCGAATTGTTTGGTCTCGACTACTGAATGCTTTCCATAAATCAGGAACTTGTGAAAGTCCAAGGGGGATCAAGTTACATCAGTGGCAGGTGCCGCATCATCATGCATTAGATGAGAACCCATCAGTCCTTGTAGTTGGAACATGTGGACATAATTCAGATGCGTCTGGTATTCTCTCCTTTGTTGATGCATACAAAGGAGAGGAGCTTAATTACTTAGCTCCTGTTCATTCCATTACGCAAATTATTCCTCTGCCATTTACTGATTCAACTGAGCAGCGTCTACATCTAATAATAGATTCTGAGGGGTACGGCCACCTGTACCCTAGAACTCCTGAGGCAGTTGACATTTTTCAAAAGGAGTTGGGAAACATATATTGGTATTCAGTTGATATAAACAATAATCTCTTAAAGGGGCATGTGGTGAAGAAAAATTGCAAAGAGGAGATATCTGATGACTACTGTTTTGAGTCCAGTGACCTTTGGTCTGTTATAATCCCCTCAGATTCAGAAAAGATCATTGCAACTTCAACCAGAAAATTTAGTGAG : GTTGTTCACACGCAAGCTAAAGTTAACGCT</gDNA_template>
            <first_frame> T  P  D  D  V  A  A  V  Q  R  I  R  L  Q  S  A  E  K  S  K  M  T  R  D  H  N  G  F  R  K  L  L  I  V  L  T  R  A  G  K  L  F  A  L  H  T  G  D  G  R  I  V  W  S  R  L  L  N  A  F  H  K  S  G  T  C  E  S  P  R  G  I  K  L  H  Q  W  Q  V  P  H  H  H  A  L  D  E  N  P  S  V  L  V  V  G  T  C  G  H  N  S  D  A  S  G  I  L  S  F  V  D  A  Y  K  G  E  E  L  N  Y  L  A  P  V  H  S  I  T  Q  I  I  P  L  P  F  T  D  S  T  E  Q  R  L  H  L  I  I  D  S  E  G  Y  G  H  L  Y  P  R  T  P  E  A  V  D  I  F  Q  K  E  L  G  N  I  Y  W  Y  S  V  D  I  N  N  N  L  L  K  G  H  V  V  K  K  N  C  K  E  E  I  S  D  D  Y  C  F  E  S  S  D  L  W  S  V  I  I  P  S  D  S  E  K  I  I  A  T  S  T  R  K  F  S  E  :  V  V  H  T  Q  A  K  V  N  A </first_frame>
            <second_frame>  L  L  M  M  *  Q  Q  F  R  E  *  G  Y  K  V  L  R  K  V  R  *  R  E  T  T  M  D  L  G  S  Y  S  L  Y  L  H  E  Q  G  N  F  L  H  F  T  Q  V  M  A  E  L  F  G  L  D  Y  *  M  L  S  I  N  Q  E  L  V  K  V  Q  G  G  S  S  Y  I  S  G  R  C  R  I  I  M  H  *  M  R  T  H  Q  S  L  *  L  E  H  V  D  I  I  Q  M  R  L  V  F  S  P  L  L  M  H  T  K  E  R  S  L  I  T  *  L  L  F  I  P  L  R  K  L  F  L  C  H  L  L  I  Q  L  S  S  V  Y  I  *  *  *  I  L  R  G  T  A  T  C  T  L  E  L  L  R  Q  L  T  F  F  K  R  S  W  E  T  Y  I  G  I  Q  L  I  *  T  I  I  S  *  R  G  M  W  *  R  K  I  A  K  R  R  Y  L  M  T  T  V  L  S  P  V  T  F  G  L  L  *  S  P  Q  I  Q  K  R  S  L  Q  L  Q  P  E  N  L  V  R :   L  F  T  R  K  L  K  L  T   </second_frame>
            <third_frame>   S  *  *  C  S  S  S  S  E  N  K  V  T  K  C  *  E  K  *  D  D  A  R  P  Q  W  I  *  E  A  T  H  C  T  Y  T  S  R  E  T  F  C  T  S  H  R  *  W  P  N  C  L  V  S  T  T  E  C  F  P  *  I  R  N  L  *  K  S  K  G  D  Q  V  T  S  V  A  G  A  A  S  S  C  I  R  *  E  P  I  S  P  C  S  W  N  M  W  T  *  F  R  C  V  W  Y  S  L  L  C  *  C  I  Q  R  R  G  A  *  L  L  S  S  C  S  F  H  Y  A  N  Y  S  S  A  I  Y  *  F  N  *  A  A  S  T  S  N  N  R  F  *  G  V  R  P  P  V  P  *  N  S  *  G  S  *  H  F  S  K  G  V  G  K  H  I  L  V  F  S  *  Y  K  Q  *  S  L  K  G  A  C  G  E  E  K  L  Q  R  G  D  I  *  *  L  L  F  *  V  Q  *  P  L  V  C  Y  N  P  L  R  F  R  K  D  H  C  N  F  N  Q  K  I  *  *   : G  C  S  H  A  S  *  S  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5035" stop="5727"/>
                    <exon start="5878" stop="5907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPDDVAAVQRIRLQSAEKSKMTRDHNGFRKLLIVLTRAGKLFALHTGDGRIVWSRLLNAFHKSGTCESPRGIKLHQWQVPHHHALDENPSVLVVGTCGHNSDASGILSFVDAYKGEELNYLAPVHSITQIIPLPFTDSTEQRLHLIIDSEGYGHLYPRTPEAVDIFQKELGNIYWYSVDINNNLLKGHVVKKNCKEEISDDYCFESSDLWSVIIPSDSEKIIATSTRKFSEVVHTQAKVNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6022" PGL_stop="8840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6022" e_stop="6099"/>
            <exon e_start="6230" e_stop="6325"/>
            <exon e_start="6422" e_stop="6616"/>
            <exon e_start="6750" e_stop="6863"/>
            <exon e_start="8475" e_stop="8840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.827" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="6022" e_stop="6099" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.827">
            <gDNA_intron_boundary i_start="6100" i_stop="6229" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6230" e_stop="6325" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6326" i_stop="6421" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6422" e_stop="6616" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6617" i_stop="6749" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6750" e_stop="6863" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6864" i_stop="8474" i_length="1611"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8475" e_stop="8840" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6022" stop="6099"/>
              <exon start="6230" stop="6325"/>
              <exon start="6422" stop="6616"/>
              <exon start="6750" stop="6863"/>
              <exon start="8475" stop="8840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATCTTGTTGACACAATAACTGGCCGAGTGCTGCTCCGTATGTCTCATCATGGCTGCCAGGGACCTGTACATGCA : GTATTTAGTGAAAATTGGGTCGTCTATCACTACTTCAACCTGCGTGCACACAGATATGAGATGTCTGTTGTTGAGATCTACGACCAGTCTCGCGCG : GACAACAAAGATGTCCTGAAGCTTGTTCTTGGAAAGCATAATCTTAGTGCGCCTGTCTCTTCCTACTCGCGTCCTGAAATCATGACCAAGTCTCAATCTTACTTCTTCACACACAGTGTGAAAGCAGTAGCAGTTACCTCAACAGCAAAAGGCATCACTTCCAAACAACTGCTTATTGGCACAATTGGTGATCAG : GTTTTGGCACTTGACAAGCGTTTTCTTGATCCTCGTCGATCACTGAACCCTACTCAAGCTGAAAAGGAGGAAGGGATTATGCCTCTTACTGATACATTGCCAATCATGCCACAG : GCTTTCGTCACACACGCCCTTAAAGTGGAAGGCCTTAGAAGCATAATAGCTATACCAGCAAAGCTAGAGTCAACCACCCTCGTCTTTGCCCACGGAGTTGATCTCTTTTTCACACGGCTTGCTCCTTCAAAGACATACGACTCTCTCACCGATGATTTCAATTATGCTTTGCTTCTCCTTACCATAGTTGCCCTAGTTATATCAATTTTCGTGACGTGGATTTGGTCCGAGAGGAAAGATTTACAGGAGAAGTGGAGGTGAGCCTTTCAATCAACAAAGTGGAGGCGAGTCCAAAGCCATTACACTTCAGTCGTTGTACTGTTTTAGTACTCAAAACCTTCTTTTTTTTTGGCACTTTAACTTAAT</gDNA_template>
            <first_frame> V  Y  L  V  D  T  I  T  G  R  V  L  L  R  M  S  H  H  G  C  Q  G  P  V  H  A  :  V  F  S  E  N  W  V  V  Y  H  Y  F  N  L  R  A  H  R  Y  E  M  S  V  V  E  I  Y  D  Q  S  R  A  :  D  N  K  D  V  L  K  L  V  L  G  K  H  N  L  S  A  P  V  S  S  Y  S  R  P  E  I  M  T  K  S  Q  S  Y  F  F  T  H  S  V  K  A  V  A  V  T  S  T  A  K  G  I  T  S  K  Q  L  L  I  G  T  I  G  D  Q  :  V  L  A  L  D  K  R  F  L  D  P  R  R  S  L  N  P  T  Q  A  E  K  E  E  G  I  M  P  L  T  D  T  L  P  I  M  P  Q  :  A  F  V  T  H  A  L  K  V  E  G  L  R  S  I  I  A  I  P  A  K  L  E  S  T  T  L  V  F  A  H  G  V  D  L  F  F  T  R  L  A  P  S  K  T  Y  D  S  L  T  D  D  F  N  Y  A  L  L  L  L  T  I  V  A  L  V  I  S  I  F  V  T  W  I  W  S  E  R  K  D  L  Q  E  K  W  R  *  A  F  Q  S  T  K  W  R  R  V  Q  S  H  Y  T  S  V  V  V  L  F  *  Y  S  K  P  S  F  F  L  A  L  *  L  N </first_frame>
            <second_frame>  F  I  L  L  T  Q  *  L  A  E  C  C  S  V  C  L  I  M  A  A  R  D  L  Y  M  Q :   Y  L  V  K  I  G  S  S  I  T  T  S  T  C  V  H  T  D  M  R  C  L  L  L  R  S  T  T  S  L  A  R :   T  T  K  M  S  *  S  L  F  L  E  S  I  I  L  V  R  L  S  L  P  T  R  V  L  K  S  *  P  S  L  N  L  T  S  S  H  T  V  *  K  Q  *  Q  L  P  Q  Q  Q  K  A  S  L  P  N  N  C  L  L  A  Q  L  V  I  R :   F  W  H  L  T  S  V  F  L  I  L  V  D  H  *  T  L  L  K  L  K  R  R  K  G  L  C  L  L  L  I  H  C  Q  S  C  H  R :   L  S  S  H  T  P  L  K  W  K  A  L  E  A  *  *  L  Y  Q  Q  S  *  S  Q  P  P  S  S  L  P  T  E  L  I  S  F  S  H  G  L  L  L  Q  R  H  T  T  L  S  P  M  I  S  I  M  L  C  F  S  L  P  *  L  P  *  L  Y  Q  F  S  *  R  G  F  G  P  R  G  K  I  Y  R  R  S  G  G  E  P  F  N  Q  Q  S  G  G  E  S  K  A  I  T  L  Q  S  L  Y  C  F  S  T  Q  N  L  L  F  F  W  H  F  N  L   </second_frame>
            <third_frame>   L  S  C  *  H  N  N  W  P  S  A  A  P  Y  V  S  S  W  L  P  G  T  C  T  C   : S  I  *  *  K  L  G  R  L  S  L  L  Q  P  A  C  T  Q  I  *  D  V  C  C  *  D  L  R  P  V  S  R   : G  Q  Q  R  C  P  E  A  C  S  W  K  A  *  S  *  C  A  C  L  F  L  L  A  S  *  N  H  D  Q  V  S  I  L  L  L  H  T  Q  C  E  S  S  S  S  Y  L  N  S  K  R  H  H  F  Q  T  T  A  Y  W  H  N  W  *  S   : G  F  G  T  *  Q  A  F  S  *  S  S  S  I  T  E  P  Y  S  S  *  K  G  G  R  D  Y  A  S  Y  *  Y  I  A  N  H  A  T   : G  F  R  H  T  R  P  *  S  G  R  P  *  K  H  N  S  Y  T  S  K  A  R  V  N  H  P  R  L  C  P  R  S  *  S  L  F  H  T  A  C  S  F  K  D  I  R  L  S  H  R  *  F  Q  L  C  F  A  S  P  Y  H  S  C  P  S  Y  I  N  F  R  D  V  D  L  V  R  E  E  R  F  T  G  E  V  E  V  S  L  S  I  N  K  V  E  A  S  P  K  P  L  H  F  S  R  C  T  V  L  V  L  K  T  F  F  F  F  G  T  L  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6022" stop="6099"/>
                    <exon start="6230" stop="6325"/>
                    <exon start="6422" stop="6616"/>
                    <exon start="6750" stop="6863"/>
                    <exon start="8475" stop="8735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLVDTITGRVLLRMSHHGCQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEIYDQSRADNKDVLKLVLGKHNLSAPVSSYSRPEIMTKSQSYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSLNPTQAEKEEGIMPLTDTLPIMPQAFVTHALKVEGLRSIIAIPAKLESTTLVFAHGVDLFFTRLAPSKTYDSLTDDFNYALLLLTIVALVISIFVTWIWSERKDLQEKWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13110" PGL_stop="9102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13110" e_stop="13037"/>
            <exon e_start="12916" e_stop="12820"/>
            <exon e_start="12676" e_stop="12613"/>
            <exon e_start="10005" e_stop="9934"/>
            <exon e_start="9800" e_stop="9102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13110" e_stop="13037" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.836">
            <gDNA_intron_boundary i_start="13036" i_stop="12917" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12916" e_stop="12820" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12819" i_stop="12677" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12676" e_stop="12613" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.698" acc_prob="0.956">
            <gDNA_intron_boundary i_start="12612" i_stop="10006" i_length="2607"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10005" e_stop="9934" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="9933" i_stop="9801" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="9800" e_stop="9102" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13099" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13065" stop="13037"/>
              <exon start="12916" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12858" stop="12820"/>
              <exon start="12676" stop="12613"/>
              <exon start="10005" stop="9934"/>
              <exon start="9800" stop="9350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9987" stop="9934"/>
              <exon start="9800" stop="9102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9768" stop="9113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9679" stop="9113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9657" stop="9191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9583" stop="9191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9455" stop="9113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9428" stop="9113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCTGCTGCTGTTTCAAAATCAGCAAGGCCAATCGTCTCACGAACAAAACCGTGCTTTTTAGTGTCCTCAAG : CATAGCTGAGATATTTCCCCCAGTTTCTTTGAACTTCGATGGCGGCGCATCAATGGCTTTAAGACCAGCAGACTACCTTGTGCATATGGGCTTTGTT : GAAGGTGCTGCTATGTGGTGCATTGGCTTTGAAAGACAAGATCAAGGTGTAACAATTTTAGGAG : ATCTTGTTCTGAAAGACAAAATCATTGTGTATGACTTGGCTCGGCAAAGGATTGGATGGACAGATTATGATT : GTTCCTCATCTGTGAATGTGTCCATAACTTCTGGCAAGGGTGAATTTATCAACGCTGGACAGTTGAGTGTGAACGGTGCATCAGGCTGTGCGATGTTCAGTCTGCAGCACACGAGAGCTAGTGCTCTTCTGCTACTATTGGTCCTTGTGATTGGTTCCCCATTTTTAACTTAATTCAGTTTTGACTTCCTTTGGTAATTTATAAGCTTCGCCAACTAATATTACTGTAGTTGGCTCGTAATTGTGTCATTTCTAAGTTCCCCACCGAGCTTAGACTCTACCTTCATTCTGACCTCAAAAGATTTGTCCTTTAGATGTTGTCTCTGTCCTGACTTGCACATGTATAGTAGAAGAGGTCTCTACGTTCATTCAGACCTCGATTTAGATGTCTATGTTGACTCGCCATGTAAATAACCTCTTAGTGAAGGATGGCAAAGTGAAGATGCATGACTAGACGCGAGACGAGAGCAATTTGTGTTTTTTGCTTCATATTGGTCAAGCTGTTGTAGAAGTATTATTTTTTTCTTCTTGTCAAAAATTGGTTTCTCTGTATGCACATTGCATCAATTGTAAAAGCAATTTGCTGTTGTAAGCATTGCTGCTTGTTAAAAATTTTCAGTTCTTATTTGTCTTATTGGCAGTGTAACACATTTTAGAATGTTTTTGTATAATGGAAATTGTTGAGTACTATACTAATCTG</gDNA_template>
            <first_frame> I  A  A  A  V  S  K  S  A  R  P  I  V  S  R  T  K  P  C  F  L  V  S  S  S :   I  A  E  I  F  P  P  V  S  L  N  F  D  G  G  A  S  M  A  L  R  P  A  D  Y  L  V  H  M  G  F  V  :  E  G  A  A  M  W  C  I  G  F  E  R  Q  D  Q  G  V  T  I  L  G   : D  L  V  L  K  D  K  I  I  V  Y  D  L  A  R  Q  R  I  G  W  T  D  Y  D   : C  S  S  S  V  N  V  S  I  T  S  G  K  G  E  F  I  N  A  G  Q  L  S  V  N  G  A  S  G  C  A  M  F  S  L  Q  H  T  R  A  S  A  L  L  L  L  L  V  L  V  I  G  S  P  F  L  T  *  F  S  F  D  F  L  W  *  F  I  S  F  A  N  *  Y  Y  C  S  W  L  V  I  V  S  F  L  S  S  P  P  S  L  D  S  T  F  I  L  T  S  K  D  L  S  F  R  C  C  L  C  P  D  L  H  M  Y  S  R  R  G  L  Y  V  H  S  D  L  D  L  D  V  Y  V  D  S  P  C  K  *  P  L  S  E  G  W  Q  S  E  D  A  *  L  D  A  R  R  E  Q  F  V  F  F  A  S  Y  W  S  S  C  C  R  S  I  I  F  F  F  L  S  K  I  G  F  S  V  C  T  L  H  Q  L  *  K  Q  F  A  V  V  S  I  A  A  C  *  K  F  S  V  L  I  C  L  I  G  S  V  T  H  F  R  M  F  L  Y  N  G  N  C  *  V  L  Y  *  S  </first_frame>
            <second_frame>  *  L  L  L  F  Q  N  Q  Q  G  Q  S  S  H  E  Q  N  R  A  F  *  C  P  Q   : A  *  L  R  Y  F  P  Q  F  L  *  T  S  M  A  A  H  Q  W  L  *  D  Q  Q  T  T  L  C  I  W  A  L  L :   K  V  L  L  C  G  A  L  A  L  K  D  K  I  K  V  *  Q  F  *  E  :  I  L  F  *  K  T  K  S  L  C  M  T  W  L  G  K  G  L  D  G  Q  I  M  I  :  V  P  H  L  *  M  C  P  *  L  L  A  R  V  N  L  S  T  L  D  S  *  V  *  T  V  H  Q  A  V  R  C  S  V  C  S  T  R  E  L  V  L  F  C  Y  Y  W  S  L  *  L  V  P  H  F  *  L  N  S  V  L  T  S  F  G  N  L  *  A  S  P  T  N  I  T  V  V  G  S  *  L  C  H  F  *  V  P  H  R  A  *  T  L  P  S  F  *  P  Q  K  I  C  P  L  D  V  V  S  V  L  T  C  T  C  I  V  E  E  V  S  T  F  I  Q  T  S  I  *  M  S  M  L  T  R  H  V  N  N  L  L  V  K  D  G  K  V  K  M  H  D  *  T  R  D  E  S  N  L  C  F  L  L  H  I  G  Q  A  V  V  E  V  L  F  F  S  S  C  Q  K  L  V  S  L  Y  A  H  C  I  N  C  K  S  N  L  L  L  *  A  L  L  L  V  K  N  F  Q  F  L  F  V  L  L  A  V  *  H  I  L  E  C  F  C  I  M  E  I  V  E  Y  Y  T  N  L </second_frame>
            <third_frame>   S  C  C  C  F  K  I  S  K  A  N  R  L  T  N  K  T  V  L  F  S  V  L  K  :  H  S  *  D  I  S  P  S  F  F  E  L  R  W  R  R  I  N  G  F  K  T  S  R  L  P  C  A  Y  G  L  C   : *  R  C  C  Y  V  V  H  W  L  *  K  T  R  S  R  C  N  N  F  R  R :   S  C  S  E  R  Q  N  H  C  V  *  L  G  S  A  K  D  W  M  D  R  L  *  L :   F  L  I  C  E  C  V  H  N  F  W  Q  G  *  I  Y  Q  R  W  T  V  E  C  E  R  C  I  R  L  C  D  V  Q  S  A  A  H  E  S  *  C  S  S  A  T  I  G  P  C  D  W  F  P  I  F  N  L  I  Q  F  *  L  P  L  V  I  Y  K  L  R  Q  L  I  L  L  *  L  A  R  N  C  V  I  S  K  F  P  T  E  L  R  L  Y  L  H  S  D  L  K  R  F  V  L  *  M  L  S  L  S  *  L  A  H  V  *  *  K  R  S  L  R  S  F  R  P  R  F  R  C  L  C  *  L  A  M  *  I  T  S  *  *  R  M  A  K  *  R  C  M  T  R  R  E  T  R  A  I  C  V  F  C  F  I  L  V  K  L  L  *  K  Y  Y  F  F  L  L  V  K  N  W  F  L  C  M  H  I  A  S  I  V  K  A  I  C  C  C  K  H  C  C  L  L  K  I  F  S  S  Y  L  S  Y  W  Q  C  N  T  F  *  N  V  F  V  *  W  K  L  L  S  T  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13110" stop="13037"/>
                    <exon start="12916" stop="12820"/>
                    <exon start="12676" stop="12613"/>
                    <exon start="10005" stop="9934"/>
                    <exon start="9800" stop="9628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAAAVSKSARPIVSRTKPCFLVSSSIAEIFPPVSLNFDGGASMALRPADYLVHMGFVEGAAMWCIGFERQDQGVTILGDLVLKDKIIVYDLARQRIGWTDYDCSSSVNVSITSGKGEFINAGQLSVNGASGCAMFSLQHTRASALLLLLVLVIGSPFLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9582" stop="9388"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYCSWLVIVSFLSSPPSLDSTFILTSKDLSFRCCLCPDLHMYSRRGLYVHSDLDLDVYVDSPCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16965" PGL_stop="15674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16965" e_stop="16882"/>
            <exon e_start="16170" e_stop="16041"/>
            <exon e_start="15928" e_stop="15674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.892"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16965" e_stop="16882" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16881" i_stop="16171" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="0.892">
            <gDNA_exon_boundary e_start="16170" e_stop="16041" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16040" i_stop="15929" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="15928" e_stop="15674" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16965" stop="16882"/>
              <exon start="16170" stop="16041"/>
              <exon start="15928" stop="15674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGACATGCTCGAATGTTGCAGAGTTTTGGTGGTGGTATTGTTGATTTTCCTGTTGTTGGTTCTTCTGACCCTTATCTTGTCGG : CCTTTATTTTACAAAAGTGAGACTGGGAACTCCGCCAAGAGAATATAACGTGCAGATTGATACCGGCAGTGATATCCTGTGGGTCACCTGCAGTTCCTGTGACGATTGTCCTCGAACAAGTGGACTTGGG : GTTGAGCTCAACTTCTATGATGCTACAGTCTCATCAACTGCCTCTCCTATTTCTTGTGCGGACCAAGTGTGCGCCTCTATAGTTCAAACTACCTCTGCTGAGTGCTCTACAGAAACCAATCAGTGTGGTTACACCTTTCAGTATGGAGATGGGAGTGGCACAACTGGTCATTACGTAGCCGATTTATTATATTTCGATACAGTCCTGGGAACCTCGTTGATTGCCAACTCCTCAGCACCAATTGTTTTTGGGTGG</gDNA_template>
            <first_frame> *  T  C  S  N  V  A  E  F  W  W  W  Y  C  *  F  S  C  C  W  F  F  *  P  L  S  C  R  :  P  L  F  Y  K  S  E  T  G  N  S  A  K  R  I  *  R  A  D  *  Y  R  Q  *  Y  P  V  G  H  L  Q  F  L  *  R  L  S  S  N  K  W  T  W   : G  *  A  Q  L  L  *  C  Y  S  L  I  N  C  L  S  Y  F  L  C  G  P  S  V  R  L  Y  S  S  N  Y  L  C  *  V  L  Y  R  N  Q  S  V  W  L  H  L  S  V  W  R  W  E  W  H  N  W  S  L  R  S  R  F  I  I  F  R  Y  S  P  G  N  L  V  D  C  Q  L  L  S  T  N  C  F  W  V  </first_frame>
            <second_frame>  R  H  A  R  M  L  Q  S  F  G  G  G  I  V  D  F  P  V  V  G  S  S  D  P  Y  L  V  G :   L  Y  F  T  K  V  R  L  G  T  P  P  R  E  Y  N  V  Q  I  D  T  G  S  D  I  L  W  V  T  C  S  S  C  D  D  C  P  R  T  S  G  L  G  :  V  E  L  N  F  Y  D  A  T  V  S  S  T  A  S  P  I  S  C  A  D  Q  V  C  A  S  I  V  Q  T  T  S  A  E  C  S  T  E  T  N  Q  C  G  Y  T  F  Q  Y  G  D  G  S  G  T  T  G  H  Y  V  A  D  L  L  Y  F  D  T  V  L  G  T  S  L  I  A  N  S  S  A  P  I  V  F  G  W </second_frame>
            <third_frame>   D  M  L  E  C  C  R  V  L  V  V  V  L  L  I  F  L  L  L  V  L  L  T  L  I  L  S   : A  F  I  L  Q  K  *  D  W  E  L  R  Q  E  N  I  T  C  R  L  I  P  A  V  I  S  C  G  S  P  A  V  P  V  T  I  V  L  E  Q  V  D  L  G :   L  S  S  T  S  M  M  L  Q  S  H  Q  L  P  L  L  F  L  V  R  T  K  C  A  P  L  *  F  K  L  P  L  L  S  A  L  Q  K  P  I  S  V  V  T  P  F  S  M  E  M  G  V  A  Q  L  V  I  T  *  P  I  Y  Y  I  S  I  Q  S  W  E  P  R  *  L  P  T  P  Q  H  Q  L  F  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16964" stop="16882"/>
                    <exon start="16170" stop="16041"/>
                    <exon start="15928" stop="15674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHARMLQSFGGGIVDFPVVGSSDPYLVGLYFTKVRLGTPPREYNVQIDTGSDILWVTCSSCDDCPRTSGLGVELNFYDATVSSTASPISCADQVCASIVQTTSAECSTETNQCGYTFQYGDGSGTTGHYVADLLYFDTVLGTSLIANSSAPIVFGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29093" PGL_stop="31637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29093" e_stop="29293"/>
            <exon e_start="29803" e_stop="30080"/>
            <exon e_start="31419" e_stop="31637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29093" e_stop="29293" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29294" i_stop="29802" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29803" e_stop="30080" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30081" i_stop="31418" i_length="1338"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31419" e_stop="31637" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29093" stop="29293"/>
              <exon start="29803" stop="30080"/>
              <exon start="31419" stop="31637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29093" stop="29293"/>
              <exon start="29803" stop="30080"/>
              <exon start="31419" stop="31626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29094" stop="29293"/>
              <exon start="29803" stop="30080"/>
              <exon start="31419" stop="31539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29094" stop="29293"/>
              <exon start="29803" stop="30027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACAAATATTATTTAGAGAAATAAAGTGAGAATTATGAAAATGAATATAGTTTTTATAGCCTCATTAATTTTGGTGTTTTCTAATTTTATTGAAGCCTCAGATGGAATGGATGTTATGCATATTTCTGGCAAAGTTCTTTGCCAAGATTGTACTCAAGGATGGAATGAATGGGTTGATGGTGCCAAAGCCATCAAAG : GTAGCATCGTATCTCTGACGTGCCTGGACGAGAGAAGAAGAGTGATGTATTACGGAAGTGACCTCACAGATGAAGCTGGAATTTTCGATTTGATTGTTAACCAAACTTGTCATGGCAAAACAATTAAGCCACAAAATTGCTTTGTGAGATTGGTTTCTTCACCTGATCCTGTTTGTAATATTGCCACCGACTTCGCCGGAGGAAAATCCGGTGTAAAGCTCCACCGTCCGACGGTGGTTTACCGGGACTTGCTCAAATATGTGCTTAGCCCTTTCTAC : TACACAACTCCCATGTGTGATGAACCTAATATTAATGATGATGATAATTTGGAGACTAATGATGATAAAAATCAAAACAATTATTAAATTAAGTTCTTATTTTTAATTTTTTCTTCTTCTAATGTTTGTGTTTAATTTCCCATTTTGTAAATGGAAAATGACAATTTATCTATGTTGGATGAGTTGATGATTTTATTTTGTACTATTAATTACGTGCAA</gDNA_template>
            <first_frame> F  E  Q  I  L  F  R  E  I  K  *  E  L  *  K  *  I  *  F  L  *  P  H  *  F  W  C  F  L  I  L  L  K  P  Q  M  E  W  M  L  C  I  F  L  A  K  F  F  A  K  I  V  L  K  D  G  M  N  G  L  M  V  P  K  P  S  K  :  V  A  S  Y  L  *  R  A  W  T  R  E  E  E  *  C  I  T  E  V  T  S  Q  M  K  L  E  F  S  I  *  L  L  T  K  L  V  M  A  K  Q  L  S  H  K  I  A  L  *  D  W  F  L  H  L  I  L  F  V  I  L  P  P  T  S  P  E  E  N  P  V  *  S  S  T  V  R  R  W  F  T  G  T  C  S  N  M  C  L  A  L  S  T :   T  Q  L  P  C  V  M  N  L  I  L  M  M  M  I  I  W  R  L  M  M  I  K  I  K  T  I  I  K  L  S  S  Y  F  *  F  F  L  L  L  M  F  V  F  N  F  P  F  C  K  W  K  M  T  I  Y  L  C  W  M  S  *  *  F  Y  F  V  L  L  I  T  C   </first_frame>
            <second_frame>  L  N  K  Y  Y  L  E  K  *  S  E  N  Y  E  N  E  Y  S  F  Y  S  L  I  N  F  G  V  F  *  F  Y  *  S  L  R  W  N  G  C  Y  A  Y  F  W  Q  S  S  L  P  R  L  Y  S  R  M  E  *  M  G  *  W  C  Q  S  H  Q  R :   *  H  R  I  S  D  V  P  G  R  E  K  K  S  D  V  L  R  K  *  P  H  R  *  S  W  N  F  R  F  D  C  *  P  N  L  S  W  Q  N  N  *  A  T  K  L  L  C  E  I  G  F  F  T  *  S  C  L  *  Y  C  H  R  L  R  R  R  K  I  R  C  K  A  P  P  S  D  G  G  L  P  G  L  A  Q  I  C  A  *  P  F  L   : L  H  N  S  H  V  *  *  T  *  Y  *  *  *  *  *  F  G  D  *  *  *  *  K  S  K  Q  L  L  N  *  V  L  I  F  N  F  F  F  F  *  C  L  C  L  I  S  H  F  V  N  G  K  *  Q  F  I  Y  V  G  *  V  D  D  F  I  L  Y  Y  *  L  R  A  </second_frame>
            <third_frame>   *  T  N  I  I  *  R  N  K  V  R  I  M  K  M  N  I  V  F  I  A  S  L  I  L  V  F  S  N  F  I  E  A  S  D  G  M  D  V  M  H  I  S  G  K  V  L  C  Q  D  C  T  Q  G  W  N  E  W  V  D  G  A  K  A  I  K   : G  S  I  V  S  L  T  C  L  D  E  R  R  R  V  M  Y  Y  G  S  D  L  T  D  E  A  G  I  F  D  L  I  V  N  Q  T  C  H  G  K  T  I  K  P  Q  N  C  F  V  R  L  V  S  S  P  D  P  V  C  N  I  A  T  D  F  A  G  G  K  S  G  V  K  L  H  R  P  T  V  V  Y  R  D  L  L  K  Y  V  L  S  P  F  Y  :  Y  T  T  P  M  C  D  E  P  N  I  N  D  D  D  N  L  E  T  N  D  D  K  N  Q  N  N  Y  *  I  K  F  L  F  L  I  F  S  S  S  N  V  C  V  *  F  P  I  L  *  M  E  N  D  N  L  S  M  L  D  E  L  M  I  L  F  C  T  I  N  Y  V  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29113" stop="29293"/>
                    <exon start="29803" stop="30080"/>
                    <exon start="31419" stop="31505"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKVRIMKMNIVFIASLILVFSNFIEASDGMDVMHISGKVLCQDCTQGWNEWVDGAKAIKGSIVSLTCLDERRRVMYYGSDLTDEAGIFDLIVNQTCHGKTIKPQNCFVRLVSSPDPVCNIATDFAGGKSGVKLHRPTVVYRDLLKYVLSPFYYTTPMCDEPNINDDDNLETNDDKNQNNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38909" PGL_stop="34616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38909" e_stop="38594"/>
            <exon e_start="37953" e_stop="37706"/>
            <exon e_start="36628" e_stop="36274"/>
            <exon e_start="35433" e_stop="34616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38909" e_stop="38594" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38593" i_stop="37954" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37953" e_stop="37706" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37705" i_stop="36629" i_length="1077"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36628" e_stop="36274" e_length="355"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36273" i_stop="35434" i_length="840"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="35433" e_stop="34616" e_length="818"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38909" stop="38594"/>
              <exon start="37953" stop="37706"/>
              <exon start="36628" stop="36450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38909" stop="38594"/>
              <exon start="37953" stop="37706"/>
              <exon start="36628" stop="36458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38908" stop="38594"/>
              <exon start="37953" stop="37706"/>
              <exon start="36628" stop="36497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38908" stop="38594"/>
              <exon start="37953" stop="37839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37759" stop="37706"/>
              <exon start="36628" stop="36274"/>
              <exon start="35433" stop="35124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37759" stop="37706"/>
              <exon start="36628" stop="36274"/>
              <exon start="35433" stop="35360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36307" stop="36274"/>
              <exon start="35433" stop="34959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36307" stop="36274"/>
              <exon start="35433" stop="35114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36307" stop="36274"/>
              <exon start="35433" stop="35120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35260" stop="34616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35189" stop="34674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35189" stop="34675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTTTCAATTTTTATTTTTAAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTGAAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGTTATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCAAGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAG : TTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGGATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTTAATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCCTTCTTATTTTAG : GGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGAAGCCATCCTAGAAAGTCTTGGAATTAACGTTGCAACAAAAAACAAGACACAACAAAATGATGAAGAAATAATGTTAAAAGAATTTGAAGATGGAAGCCAGCTAATGGCTGTTAATTTTTATCCACCTTGTCCTAATCCTGATTTGACACTTGGAATGCCACCTCATTCTGATTATGGATTTTTAACTCTTCTACTCCAAGATGAAGTTGAAGGTTTACAAGTCAAGTCCAATGATGATTGGGTCACTATTCAACCCATCCCTAATGCTTTTGTGGTCAATGTTGGTGACCACCTCGAG : ATATTTAGCAATGGAAAATACAAAAGTGTGTTACATAGAGTTCTTGTGAACTCTTTAAAGTCAAGAATTTCAGTGGCTTCTTTGCATAGTCTTCCATTCAATAGCATAATAAAGCCATCACCTAAATTAATTAGTGAAACAAATCCAAGTCTTTACAAAGACACAAATTTTGCTGCATTTCTTGAATACTTAAAATCTTGTGATTCCACTAATAAAAGTTTCCTTGAGACAAGAAGGTTAACATGAAAAAAAAAATGAAATCGAACACTACCAGACAAGTTTGATTTTATCTGAATCTTTATTGAAAAAAAAAAAGAAGTTATTCACCCGTCACTATAATATTTATACTAAATTCCATCAATTCATTAAACATGATGGTTGCGCTCTTGGATGATTAATTAATCACCAGACCAATGAAGAGACTCTCCAGAATATGCATTTTAATAAAAGAAAATTTGTTGAAATTTTGACAATCGACCTTTCAATAGAATGTACTATTTAATAATCGATCACCAGATCAATGAAGAGACTCTCTAGAATGTGCATTTTAATAAAAAAGAATTTGTTGAAATTTCGACAATCGACCTTTCGGTAGAATGTACTGGGAAATGAAGTGCAGCCAAAGAATTAGGAGAATTTGGACAAGTTTTGTTTATTTTGACTTTTTCATTATTAGTTACTATTTTTTGTAATTGGTTAGATCAATTATTAATAGAAATTATTGGTTTGGTATATAGTTCATATCAAGTTAACCACATATTTGTATTGAGATTATTATAAACGTATATACAACAACTCTAGATTCTTCGAAATTATAC</gDNA_template>
            <first_frame> L  L  F  N  F  Y  F  *  K  N  V  S  I  I  G  K  I  *  *  K  I  E  E  *  N  *  R  L  S  *  R  S  K  V  F  A  *  K  W  N  S  K  S  S  K  E  I  H  F  S  Y  F  R  K  T  K  L  L  Y  Y  K  *  K  S  T  S  C  *  Q  T  Q  S  *  V  A  C  H  R  F  F  S  T  L  W  S  *  *  S  S  S  S  *  F  T  L  L  C  L  *  K  L  W  I  F  S   : V  D  K  P  W  D  S  R  R  G  N  K  K  Y  G  G  C  W  R  K  V  F  *  S  S  I  S  R  K  G  K  V  H  D  K  R  H  D  N  T  S  *  I  W  D  K  F  *  S  N  K  R  W  C  L  L  L  E  G  L  S  Q  A  C  L  *  P  S  S  S  S  P  S  S  L  A  F  F  S  F  L  F  *  :  G  N  G  S  Y  I  L  *  R  D  Q  N  L  I  Y  K  V  S  G  S  H  P  R  K  S  W  N  *  R  C  N  K  K  Q  D  T  T  K  *  *  R  N  N  V  K  R  I  *  R  W  K  P  A  N  G  C  *  F  L  S  T  L  S  *  S  *  F  D  T  W  N  A  T  S  F  *  L  W  I  F  N  S  S  T  P  R  *  S  *  R  F  T  S  Q  V  Q  *  *  L  G  H  Y  S  T  H  P  *  C  F  C  G  Q  C  W  *  P  P  R   : D  I  *  Q  W  K  I  Q  K  C  V  T  *  S  S  C  E  L  F  K  V  K  N  F  S  G  F  F  A  *  S  S  I  Q  *  H  N  K  A  I  T  *  I  N  *  *  N  K  S  K  S  L  Q  R  H  K  F  C  C  I  S  *  I  L  K  I  L  *  F  H  *  *  K  F  P  *  D  K  K  V  N  M  K  K  K  M  K  S  N  T  T  R  Q  V  *  F  Y  L  N  L  Y  *  K  K  K  R  S  Y  S  P  V  T  I  I  F  I  L  N  S  I  N  S  L  N  M  M  V  A  L  L  D  D  *  L  I  T  R  P  M  K  R  L  S  R  I  C  I  L  I  K  E  N  L  L  K  F  *  Q  S  T  F  Q  *  N  V  L  F  N  N  R  S  P  D  Q  *  R  D  S  L  E  C  A  F  *  *  K  R  I  C  *  N  F  D  N  R  P  F  G  R  M  Y  W  E  M  K  C  S  Q  R  I  R  R  I  W  T  S  F  V  Y  F  D  F  F  I  I  S  Y  Y  F  L  *  L  V  R  S  I  I  N  R  N  Y  W  F  G  I  *  F  I  S  S  *  P  H  I  C  I  E  I  I  I  N  V  Y  T  T  T  L  D  S  S  K  L  Y </first_frame>
            <second_frame>  F  F  S  I  F  I  F  K  K  M  S  P  S  L  A  K  S  S  E  K  L  K  N  E  I  E  D  Y  H  K  G  V  K  Y  L  H  E  S  G  I  Q  K  V  P  K  K  Y  I  F  P  I  S  E  R  P  N  C  Y  T  I  N  E  N  P  Q  V  A  S  K  H  N  L  K  L  P  V  I  D  F  S  Q  L  Y  G  P  N  R  A  Q  V  L  D  S  L  S  Y  A  C  E  N  Y  G  F  F  Q  :  L  T  N  H  G  I  P  E  E  V  I  K  N  M  V  D  V  G  G  R  F  F  D  L  P  L  V  E  R  E  K  Y  M  T  K  D  M  T  T  P  V  R  Y  G  T  S  F  N  Q  T  K  D  G  V  F  C  W  R  D  F  L  K  L  V  C  D  P  L  P  Q  V  L  P  H  W  P  S  S  P  S  Y  F  R :   E  M  A  V  T  Y  S  K  E  T  K  I  L  F  I  K  L  V  E  A  I  L  E  S  L  G  I  N  V  A  T  K  N  K  T  Q  Q  N  D  E  E  I  M  L  K  E  F  E  D  G  S  Q  L  M  A  V  N  F  Y  P  P  C  P  N  P  D  L  T  L  G  M  P  P  H  S  D  Y  G  F  L  T  L  L  L  Q  D  E  V  E  G  L  Q  V  K  S  N  D  D  W  V  T  I  Q  P  I  P  N  A  F  V  V  N  V  G  D  H  L  E  :  I  F  S  N  G  K  Y  K  S  V  L  H  R  V  L  V  N  S  L  K  S  R  I  S  V  A  S  L  H  S  L  P  F  N  S  I  I  K  P  S  P  K  L  I  S  E  T  N  P  S  L  Y  K  D  T  N  F  A  A  F  L  E  Y  L  K  S  C  D  S  T  N  K  S  F  L  E  T  R  R  L  T  *  K  K  K  *  N  R  T  L  P  D  K  F  D  F  I  *  I  F  I  E  K  K  K  E  V  I  H  P  S  L  *  Y  L  Y  *  I  P  S  I  H  *  T  *  W  L  R  S  W  M  I  N  *  S  P  D  Q  *  R  D  S  P  E  Y  A  F  *  *  K  K  I  C  *  N  F  D  N  R  P  F  N  R  M  Y  Y  L  I  I  D  H  Q  I  N  E  E  T  L  *  N  V  H  F  N  K  K  E  F  V  E  I  S  T  I  D  L  S  V  E  C  T  G  K  *  S  A  A  K  E  L  G  E  F  G  Q  V  L  F  I  L  T  F  S  L  L  V  T  I  F  C  N  W  L  D  Q  L  L  I  E  I  I  G  L  V  Y  S  S  Y  Q  V  N  H  I  F  V  L  R  L  L  *  T  Y  I  Q  Q  L  *  I  L  R  N  Y   </second_frame>
            <third_frame>   S  F  Q  F  L  F  L  K  K  C  L  H  H  W  Q  N  L  V  K  N  *  R  M  K  L  K  I  I  I  K  E  *  S  I  C  M  K  V  E  F  K  K  F  Q  R  N  T  F  F  L  F  Q  K  D  Q  I  V  I  L  *  M  K  I  H  K  L  L  A  N  T  I  L  S  C  L  S  *  I  F  L  N  S  M  V  L  I  E  L  K  F  L  I  H  S  P  M  P  V  K  T  M  D  F  F  S :   *  Q  T  M  G  F  Q  K  R  *  *  K  I  W  W  M  L  E  E  G  F  L  I  F  H  *  *  K  G  K  S  T  *  Q  K  T  *  Q  H  Q  L  D  M  G  Q  V  L  I  K  Q  K  M  V  S  F  V  G  G  T  F  S  S  L  F  V  T  L  F  L  K  S  F  L  I  G  L  L  L  L  L  I  L   : G  K  W  Q  L  H  T  L  K  R  P  K  S  Y  L  *  S  *  W  K  P  S  *  K  V  L  E  L  T  L  Q  Q  K  T  R  H  N  K  M  M  K  K  *  C  *  K  N  L  K  M  E  A  S  *  W  L  L  I  F  I  H  L  V  L  I  L  I  *  H  L  E  C  H  L  I  L  I  M  D  F  *  L  F  Y  S  K  M  K  L  K  V  Y  K  S  S  P  M  M  I  G  S  L  F  N  P  S  L  M  L  L  W  S  M  L  V  T  T  S  R :   Y  L  A  M  E  N  T  K  V  C  Y  I  E  F  L  *  T  L  *  S  Q  E  F  Q  W  L  L  C  I  V  F  H  S  I  A  *  *  S  H  H  L  N  *  L  V  K  Q  I  Q  V  F  T  K  T  Q  I  L  L  H  F  L  N  T  *  N  L  V  I  P  L  I  K  V  S  L  R  Q  E  G  *  H  E  K  K  N  E  I  E  H  Y  Q  T  S  L  I  L  S  E  S  L  L  K  K  K  K  K  L  F  T  R  H  Y  N  I  Y  T  K  F  H  Q  F  I  K  H  D  G  C  A  L  G  *  L  I  N  H  Q  T  N  E  E  T  L  Q  N  M  H  F  N  K  R  K  F  V  E  I  L  T  I  D  L  S  I  E  C  T  I  *  *  S  I  T  R  S  M  K  R  L  S  R  M  C  I  L  I  K  K  N  L  L  K  F  R  Q  S  T  F  R  *  N  V  L  G  N  E  V  Q  P  K  N  *  E  N  L  D  K  F  C  L  F  *  L  F  H  Y  *  L  L  F  F  V  I  G  *  I  N  Y  *  *  K  L  L  V  W  Y  I  V  H  I  K  L  T  T  Y  L  Y  *  D  Y  Y  K  R  I  Y  N  N  S  R  F  F  E  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38908" stop="38594"/>
                    <exon start="37953" stop="37706"/>
                    <exon start="36628" stop="36274"/>
                    <exon start="35433" stop="35188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSIFIFKKMSPSLAKSSEKLKNEIEDYHKGVKYLHESGIQKVPKKYIFPISERPNCYTINENPQVASKHNLKLPVIDFSQLYGPNRAQVLDSLSYACENYGFFQLTNHGIPEEVIKNMVDVGGRFFDLPLVEREKYMTKDMTTPVRYGTSFNQTKDGVFCWRDFLKLVCDPLPQVLPHWPSSPSYFREMAVTYSKETKILFIKLVEAILESLGINVATKNKTQQNDEEIMLKEFEDGSQLMAVNFYPPCPNPDLTLGMPPHSDYGFLTLLLQDEVEGLQVKSNDDWVTIQPIPNAFVVNVGDHLEIFSNGKYKSVLHRVLVNSLKSRISVASLHSLPFNSIIKPSPKLISETNPSLYKDTNFAAFLEYLKSCDSTNKSFLETRRLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43908" PGL_stop="45984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43914" e_stop="44026"/>
            <exon e_start="44133" e_stop="44142"/>
            <exon e_start="44371" e_stop="44409"/>
            <exon e_start="44641" e_stop="44652"/>
            <exon e_start="45420" e_stop="45984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.571"/>
          <exon-intron don_prob="0.454" acc_prob="0.000" e_score="0.900"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.744"/>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="43914" e_stop="44026" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44027" i_stop="44132" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="44133" e_stop="44142" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.454" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44143" i_stop="44370" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.744">
            <gDNA_exon_boundary e_start="44371" e_stop="44409" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="44641" e_stop="44652" e_length="12"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="45420" e_stop="45984" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43914" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43924" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43926" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550322" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43927" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550211" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550464" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550025" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396039" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43929" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43931" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550207" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396057" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396069" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43934" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377132" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43934" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374998" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAG : TTTATAATAG : TGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGA : AGTAATAATAAA : TGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATAGAGAGAGA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  I  K  F  S :   L  *  *  :  C  *  K  V  I  K  N  *  K  Y  L  I  *  :  S  N  N  K  :  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  V  E  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  G  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  *  S  *  *  V  Y  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  E  *  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  E  *  E  K  E  K  N  R  K  R  E  K  E  N  R  *  R  E  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  *  L  N  L   : V  Y  N  S :   V  K  K  *  *  K  I  K  N  I  *  Y  E :   V  I  I  N :   V  T  I  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  G  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  Y  K  V  S  E  F  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  K  L  V  G  Y  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  L  N  K  K  K  K  R  T  E  R  E  R  R  R  I  D  R  E  R </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  N  *  I  *  :  F  I  I   : V  L  K  S  N  K  K  L  K  I  F  N  M   : K  *  *  *   : M  *  R  S  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  *  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  R  A  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  I  K  L  V  S  L  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  A  N  *  G  K  R  K  R  V  *  I  R  K  R  K  E  Q  K  E  R  E  G  E  S  I  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44641" stop="44652"/>
                    <exon start="45420" stop="45659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNKCNDLFSRFEQQILFLEKQVETTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHGLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43908" e_stop="44026"/>
            <exon e_start="44803" e_stop="44817"/>
            <exon e_start="45416" e_stop="45975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.501" e_score="0.786"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.786">
            <gDNA_exon_boundary e_start="43908" e_stop="44026" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.501">
            <gDNA_intron_boundary i_start="44027" i_stop="44802" i_length="776"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="44803" e_stop="44817" e_length="15"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44818" i_stop="45415" i_length="598"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="45416" e_stop="45975" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43908" stop="44026"/>
              <exon start="44803" stop="44817"/>
              <exon start="45416" stop="45974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377133" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43920" stop="44026"/>
              <exon start="44803" stop="44817"/>
              <exon start="45416" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43926" stop="44026"/>
              <exon start="44803" stop="44817"/>
              <exon start="45416" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43926" stop="44026"/>
              <exon start="44133" stop="44142"/>
              <exon start="44371" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAG : GATAGTGACAACAAA : AATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</gDNA_template>
            <first_frame> R  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  I  K  F  R :   I  V  T  T  K :   I  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  V  E  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  G  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  *  S  *  *  V  Y  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  E  *  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  E  *  E  K  E  K  N  R  K  R  E  K  E  N  R  </first_frame>
            <second_frame>  A  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  *  L  N  L   : G  *  *  Q  Q   : K  F  V  T  I  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  G  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  Y  K  V  S  E  F  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  K  L  V  G  Y  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  L  N  K  K  K  K  R  T  E  R  E  R  R  R  I  D </second_frame>
            <third_frame>   H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  N  *  I  *  :  D  S  D  N  K  :  N  L  *  R  S  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  *  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  R  A  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  I  K  L  V  S  L  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  A  N  *  G  K  R  K  R  V  *  I  R  K  R  K  E  Q  K  E  R  E  G  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43908" stop="44026"/>
                    <exon start="44803" stop="44817"/>
                    <exon start="45416" stop="45659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFIIKFRIVTTKICNDLFSRFEQQILFLEKQVETTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHGLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43922" e_stop="44026"/>
            <exon e_start="44349" e_stop="44409"/>
            <exon e_start="44641" e_stop="44652"/>
            <exon e_start="45420" e_stop="45975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.571"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.656"/>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="43922" e_stop="44026" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44027" i_stop="44348" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.656">
            <gDNA_exon_boundary e_start="44349" e_stop="44409" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44410" i_stop="44640" i_length="231"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="44641" e_stop="44652" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44653" i_stop="45419" i_length="767"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="45420" e_stop="45975" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43922" stop="44026"/>
              <exon start="44349" stop="44409"/>
              <exon start="44641" stop="44652"/>
              <exon start="45420" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550201" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAG : AGCAAAATTATAATTTCATCCTTGTTAAAAAGTAATAAAAAATTAAAAATATTTAATATGA : AGTAATAATAAA : TGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  N  *  I  *  :  S  K  I  I  I  S  S  L  L  K  S  N  K  K  L  K  I  F  N  M   : K  *  *  *   : M  *  R  S  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  *  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  R  A  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  I  K  L  V  S  L  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  A  N  *  G  K  R  K  R  V  *  I  R  K  R  K  E  Q  K  E  R  E  G  E  S   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  I  K  F  R :   A  K  L  *  F  H  P  C  *  K  V  I  K  N  *  K  Y  L  I  *  :  S  N  N  K  :  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  V  E  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  G  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  *  S  *  *  V  Y  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  E  *  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  E  *  E  K  E  K  N  R  K  R  E  K  E  N  R  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  *  L  N  L   : E  Q  N  Y  N  F  I  L  V  K  K  *  *  K  I  K  N  I  *  Y  E :   V  I  I  N :   V  T  I  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  G  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  Y  K  V  S  E  F  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  K  L  V  G  Y  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  L  N  K  K  K  K  R  T  E  R  E  R  R  R  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44641" stop="44652"/>
                    <exon start="45420" stop="45659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNKCNDLFSRFEQQILFLEKQVETTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHGLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43919" e_stop="44026"/>
            <exon e_start="45399" e_stop="45975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.786"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.786">
            <gDNA_exon_boundary e_start="43919" e_stop="44026" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44027" i_stop="45398" i_length="1372"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="45399" e_stop="45975" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43919" stop="44026"/>
              <exon start="45399" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389553" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTAAATTTAG : GTTTGATATCAATCGACAATTTGTAACGATCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGTTGAGACGACGGAACCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACGGGCTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATATAAAGTTAGTGAGTTTATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGAT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  N  *  I  *  :  V  *  Y  Q  S  T  I  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  K  Q  V  E  T  T  E  P  T  T  D  R  H  E  H  D  G  P  S  R  G  L  V  S  K  H  L  E  I  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  G  L  F  G  G  N  *  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  *  S  *  *  V  Y  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  E  *  I  S  G  L  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  E  *  E  K  E  K  N  R  K  R  E  K  E  N  R  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  I  K  F  R :   F  D  I  N  R  Q  F  V  T  I  C  L  V  V  L  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  N  P  R  R  T  V  M  S  T  T  D  R  R  G  V  S  F  Q  N  T  *  K  F  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  G  S  L  V  E  I  E  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  *  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  Y  K  V  S  E  F  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  K  L  V  G  Y  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  L  N  K  K  K  K  R  T  E  R  E  R  R  R  I  D </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  *  L  N  L   : G  L  I  S  I  D  N  L  *  R  S  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  *  D  D  G  T  H  D  G  P  S  *  A  R  R  T  V  E  G  S  R  F  K  T  L  R  N  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  R  A  L  W  W  K  L  S  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  I  K  L  V  S  L  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  A  N  *  G  K  R  K  R  V  *  I  R  K  R  K  E  Q  K  E  R  E  G  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43920" stop="44026"/>
                    <exon start="45399" stop="45549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFIIKFRFDINRQFVTICLVVLSSRFYFWKNRLRRRNPRRTVMSTTDRRGVSFQNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45405" stop="45659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQSTICNDLFSRFEQQILFLEKQVETTEPTTDRHEHDGPSRGLVSKHLEILKLGTENRLSELRNGMAGRTVTGVTDRHGLFGGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45975" PGL_stop="45417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45975" e_stop="45417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="45975" e_stop="45417" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45975" stop="45419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45975" stop="45419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45975" stop="45522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45974" stop="45417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45974" stop="45430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45974" stop="45503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACTCACTAACTTTATATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGCCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGATCGTTACAAAT</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  L  T  N  F  I  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  A  R  D  G  P  S  R  L  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  D  R  Y  K  </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  S  L  T  L  Y  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  P  V  T  V  R  H  A  C  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  L  N  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  I  V  T  N </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  P  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  S  T  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45788" stop="45546"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPSCLRRSVLQVVARFRDSISTKEPVTVRHACDGPSCHSVTKFRESIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="46034" PGL_stop="46438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46034" e_stop="46438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="46034" e_stop="46438" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46034" stop="46438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAACAAAGAAGGCTTGATGAATTGATAGAAGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATATAATTAGTGGGACGGGTGTCATGAACCGACACA</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  N  K  E  G  L  M  N  *  *  K  *  I  *  G  I  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  *  L  V  G  R  V  S  *  T  D  T </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  T  K  K  A  *  *  I  D  R  S  R  F  R  G  S  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  Y  N  *  W  D  G  C  H  E  P  T   </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  Q  R  R  L  D  E  L  I  E  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  I  I  S  G  T  G  V  M  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="46810" PGL_stop="47487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46810" e_stop="46866"/>
            <exon e_start="47068" e_stop="47487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.825"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.825">
            <gDNA_exon_boundary e_start="46810" e_stop="46866" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46867" i_stop="47067" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="47068" e_stop="47487" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46810" stop="46866"/>
              <exon start="47068" stop="47487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTA : ATAGAATTAGGGGGATCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTATTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATTAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  K  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  :  I  E  L  G  G  S  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  I  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  I  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  *  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  * :   *  N  *  G  D  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  F  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   Q  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I   : N  R  I  R  G  I  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  I  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  L  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="48876" PGL_stop="48086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48876" e_stop="48086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="48876" e_stop="48086" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48876" stop="48157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48873" stop="48210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48518" stop="48086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGAACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATGTGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCAGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAAACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAAATCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTTCTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCTCTTGCCGTTGCTCTTC</gDNA_template>
            <first_frame> A  N  P  L  L  *  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  M  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  I  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  N  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  I  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  M  A  S  C  R  C  S   </first_frame>
            <second_frame>  R  I  R  S  C  E  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  C  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  Q  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  K  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  F  S  V  G  G  G  V  T  A  L  A  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  W  P  L  A  V  A  L  </second_frame>
            <third_frame>   E  S  A  L  V  N  *  N  K  V  G  W  H  T  L  I  M  H  E  T  *  P  H  V  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  R  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  H  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  K  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  N  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  L  L  S  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  F  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48363" stop="48088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQILILHLFILPFLTLSYYFLSRWRSHRPSIRWARCLSSSSRGRPPTTSTMASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48875" stop="48666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCELKQSWVAYLDNARNLASCAVTDILPCSRLKNSSLFLSLKVQGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48284" stop="48087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGKSSFCTCSFSPSSPSLTTFSVGGGVTALASDGLGVCPLPLEDVLPRPLPWPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="48153" PGL_stop="48706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48153" e_stop="48706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="48153" e_stop="48706" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48153" stop="48706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGAAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGATTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  E  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  F  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  F  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  K  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  D  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  I  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  F  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  M  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48154" stop="48705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEKVVREGEEGENEQVQNEDLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="48780" PGL_stop="50224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48780" e_stop="48966"/>
            <exon e_start="49711" e_stop="50224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="48780" e_stop="48966" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48967" i_stop="49710" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="49711" e_stop="50224" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48780" stop="48966"/>
              <exon start="49711" stop="50224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCACATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTTCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTCTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTTCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGTTATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTTGGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  T  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  Q  F  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  S  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  G  V  K  G  P  T  L  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  L  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  H  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  S  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  V  A  A  T  A  K  S  S  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  R  D  V  F  P  A  D  L  P  G  M  P  P  D  R  V  I  D  F  C  I  D  L  E  P  G  T  R  P  I  F  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  *  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  W  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  R  F  Q  P  Y  R  *  R  L  Q  R  N  L  L  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  Q  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  G  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  L  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48781" stop="48966"/>
                    <exon start="49711" stop="50118"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAHEAKFRALSRYATQLCFSSQERIRRFVKGLRSELQISALQVAATAKSSQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFRDVFPADLPGMPPDRVIDFCIDLEPGTRPIFIPPYRMAPAELRELKAQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="50796" PGL_stop="49039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50796" e_stop="49039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="50796" e_stop="49039" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50796" stop="50084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50796" stop="50201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50796" stop="50271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50276" stop="49618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50207" stop="49446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50207" stop="49547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49804" stop="49474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49597" stop="49039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTGTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTTGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCTTGTAGTCTATGCACATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTAAAGTTGGGCCTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATAACCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGTGTAGAAACACGAATCGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGAAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCTGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCACACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGACCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCCCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGAACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  *  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  C  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  I  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  L  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  K  N  G  A  S  T  R  F  K  I  N  T  E  V  N  N  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  C  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  E  I  T  N  R  K  I  T  C  D  D  S  I  *  C  L  C  F  *  P  P  R  E  S  V  T  M  G  P  H  T  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  P  T  V  L  V  T  T  I  T  S  T  T  A  S  P  R  M  T  T  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  S  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  E  V  L  T  G  L  R  W  N  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  N  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  R  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  V  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  L  *  S  M  H  I  Q  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  K  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  T  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  K  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  T  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  V  S  P  H  P  *  H  S  L  G  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  T  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  T  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  A  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  L  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  H  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  C  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  C  S  L  C  T  S  K  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  K  V  G  P  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  *  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  V  *  K  H  E  S  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  *  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  L  L  L  T  A  Q  G  K  R  N  N  G  P  S  H  L  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  D  R  F  G  D  H  H  Y  L  D  H  R  V  P  Q  N  D  D  L  F  H  N  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  Q  S  P  H  I  H  N  T  L  W  V  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  E  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50631" stop="50293"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHCQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPIHQTHERSRGIRKTKRHYYKFVMPIPSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49365" stop="49111"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITPTVLVTTITSTTASPRMTTSSITTSTSNIWRSVTLFWTIPLNVSSLPTSITLSGFKHRSLREVLTGLRWNPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50069" stop="49824"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIKMGRVPGSRSIQKSITLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="59286" PGL_stop="58644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59286" e_stop="58644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59286" e_stop="58644" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59286" stop="58644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59286" stop="58646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCCACCATGTAATTTTCACAAAACCAAAACACATACTTTCCCTTACAACATCTTCAAAAATACCAACTAATAGTAGTACTAAAATTCTCATATCACAAAAAAAACTTGTACACACTTTTTTCAACAAAAAATGTAACAAAAACATTATTTCTCCTATGGCATCATCATCAATTAATCAATTTGATGATGAATTTCACCCTGACCCTACCCTTACAAATGATGATCTCAAGCCTACGTCGATCGATCAACGTAACTTTTCAGGTTGGGAAATGTCTAGTCTATGGATTGGACTAGTTGTTGGTGTGCCCTCATATTACCTAGCTGGTAGCCTAGTTGATCTTGGCATGTCATGGTGGCAAGGTATTGCAATTGTTGTATTAGCTAATTTAATAACTTTACTACCACTTGTATTAATAGGTCAACCAGGCACAAAATTTGGCATATCATTTCCTGTTTTAGCTAGATCATCATTTGGCATTAGAGGTGCACATATTCCTACACTACTTAGAGCTTTAGTTGGTTGTGGTTGGTATGGTATTGAAACATGGATTGGTGGTGAAGCAATTTTCTTGTTGTTACCAAAAGTTGTTAAGGATTCACATTTGTCACAATCAATATCTTGGCTTGGCACATCACCTGT</gDNA_template>
            <first_frame> I  P  T  M  *  F  S  Q  N  Q  N  T  Y  F  P  L  Q  H  L  Q  K  Y  Q  L  I  V  V  L  K  F  S  Y  H  K  K  N  L  Y  T  L  F  S  T  K  N  V  T  K  T  L  F  L  L  W  H  H  H  Q  L  I  N  L  M  M  N  F  T  L  T  L  P  L  Q  M  M  I  S  S  L  R  R  S  I  N  V  T  F  Q  V  G  K  C  L  V  Y  G  L  D  *  L  L  V  C  P  H  I  T  *  L  V  A  *  L  I  L  A  C  H  G  G  K  V  L  Q  L  L  Y  *  L  I  *  *  L  Y  Y  H  L  Y  *  *  V  N  Q  A  Q  N  L  A  Y  H  F  L  F  *  L  D  H  H  L  A  L  E  V  H  I  F  L  H  Y  L  E  L  *  L  V  V  V  G  M  V  L  K  H  G  L  V  V  K  Q  F  S  C  C  Y  Q  K  L  L  R  I  H  I  C  H  N  Q  Y  L  G  L  A  H  H  L  </first_frame>
            <second_frame>  S  P  P  C  N  F  H  K  T  K  T  H  T  F  P  Y  N  I  F  K  N  T  N  *  *  *  Y  *  N  S  H  I  T  K  K  T  C  T  H  F  F  Q  Q  K  M  *  Q  K  H  Y  F  S  Y  G  I  I  I  N  *  S  I  *  *  *  I  S  P  *  P  Y  P  Y  K  *  *  S  Q  A  Y  V  D  R  S  T  *  L  F  R  L  G  N  V  *  S  M  D  W  T  S  C  W  C  A  L  I  L  P  S  W  *  P  S  *  S  W  H  V  M  V  A  R  Y  C  N  C  C  I  S  *  F  N  N  F  T  T  T  C  I  N  R  S  T  R  H  K  I  W  H  I  I  S  C  F  S  *  I  I  I  W  H  *  R  C  T  Y  S  Y  T  T  *  S  F  S  W  L  W  L  V  W  Y  *  N  M  D  W  W  *  S  N  F  L  V  V  T  K  S  C  *  G  F  T  F  V  T  I  N  I  L  A  W  H  I  T  C </second_frame>
            <third_frame>   P  H  H  V  I  F  T  K  P  K  H  I  L  S  L  T  T  S  S  K  I  P  T  N  S  S  T  K  I  L  I  S  Q  K  K  L  V  H  T  F  F  N  K  K  C  N  K  N  I  I  S  P  M  A  S  S  S  I  N  Q  F  D  D  E  F  H  P  D  P  T  L  T  N  D  D  L  K  P  T  S  I  D  Q  R  N  F  S  G  W  E  M  S  S  L  W  I  G  L  V  V  G  V  P  S  Y  Y  L  A  G  S  L  V  D  L  G  M  S  W  W  Q  G  I  A  I  V  V  L  A  N  L  I  T  L  L  P  L  V  L  I  G  Q  P  G  T  K  F  G  I  S  F  P  V  L  A  R  S  S  F  G  I  R  G  A  H  I  P  T  L  L  R  A  L  V  G  C  G  W  Y  G  I  E  T  W  I  G  G  E  A  I  F  L  L  L  P  K  V  V  K  D  S  H  L  S  Q  S  I  S  W  L  G  T  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59284" stop="58646"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHHVIFTKPKHILSLTTSSKIPTNSSTKILISQKKLVHTFFNKKCNKNIISPMASSSINQFDDEFHPDPTLTNDDLKPTSIDQRNFSGWEMSSLWIGLVVGVPSYYLAGSLVDLGMSWWQGIAIVVLANLITLLPLVLIGQPGTKFGISFPVLARSSFGIRGAHIPTLLRALVGCGWYGIETWIGGEAIFLLLPKVVKDSHLSQSISWLGTSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="69256" PGL_stop="71026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69256" e_stop="69381"/>
            <exon e_start="69653" e_stop="69783"/>
            <exon e_start="70364" e_stop="71026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69256" e_stop="69381" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.946">
            <gDNA_intron_boundary i_start="69382" i_stop="69652" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69653" e_stop="69783" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.968">
            <gDNA_intron_boundary i_start="69784" i_stop="70363" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="70364" e_stop="71026" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69256" stop="69381"/>
              <exon start="69653" stop="69783"/>
              <exon start="70364" stop="70772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="69381"/>
              <exon start="69653" stop="69783"/>
              <exon start="70364" stop="70625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="69381"/>
              <exon start="69653" stop="69783"/>
              <exon start="70364" stop="70559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70508" stop="71026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAATGATACTCCAAAGAGCAACAACAAGTACACTAACTTCAATAGAGCACCTCAAAAGCTTAGTCAGTCCCAAGAACTTTGGGTGGATCGACTTCATTCAGATCGCAAAAGTAGTGAATCAGAG : GGTGAAAATAGTTCCTCCGACGGAATTACTTCTTCTGTTGTAGTGGATTACTTGGCTAGAATACAATTGCTTGAGAACAAGCTTGGTGAAGCATTAGAAGCCAATAAGAAGTACAAAATTCAGCTTCAACG : GTTCAAGACTGAGGAACGTAGAGGACATTCACCGGCTTCCAAGAAATCAGAAGGGGACAACGAAATGGTGAAAAGGTTCGAACATACAAAGGCTTTACTAGAAGCAGAACTAAAAGACATTCGAGAACGATACTTTCAAATGAGTCTTAAGTATGCTGAAGTAGAAGCACAAAGAGAGGATCTTGTTATGAAACTGAAGGCAGTTAAGAGCGGAAAGAGATGGTTCTCTTGAATCACGACTAGCATTCTCGCGGAGCATTCATCCTAACCTTAGGTAAACCAATCCACATTTTCACATTATGTTGCTCGGACTCTTCAACAAATGTCTCCTGATACACGTTAGATCTTCCAAAAGTACTACGTATATTTTTTGAGAATCGATCTAACACAGGCGCAACAACATTTTTGCAGAGTTACGAGCTATATAGTCTAGCACATATATTACCATTGTAATTTATCCTCAAAATAACTAAAAGCAAGATATAGACAATAAAAAATTAGAACCAAATAAGATTGTTATATACAATGGCAAGGCATAGTGGATATTTTTAGACAAGAAAGTACACACTAACAAAAGTGTGATATTATTCTCTATGTATAGTAAAACAACACAGTGACAAAGTTAGAAATTTTATCAACGGTATTCAACCGTCTTCAAGATTA</gDNA_template>
            <first_frame> Q  N  D  T  P  K  S  N  N  K  Y  T  N  F  N  R  A  P  Q  K  L  S  Q  S  Q  E  L  W  V  D  R  L  H  S  D  R  K  S  S  E  S  E  :  G  E  N  S  S  S  D  G  I  T  S  S  V  V  V  D  Y  L  A  R  I  Q  L  L  E  N  K  L  G  E  A  L  E  A  N  K  K  Y  K  I  Q  L  Q  R :   F  K  T  E  E  R  R  G  H  S  P  A  S  K  K  S  E  G  D  N  E  M  V  K  R  F  E  H  T  K  A  L  L  E  A  E  L  K  D  I  R  E  R  Y  F  Q  M  S  L  K  Y  A  E  V  E  A  Q  R  E  D  L  V  M  K  L  K  A  V  K  S  G  K  R  W  F  S  *  I  T  T  S  I  L  A  E  H  S  S  *  P  *  V  N  Q  S  T  F  S  H  Y  V  A  R  T  L  Q  Q  M  S  P  D  T  R  *  I  F  Q  K  Y  Y  V  Y  F  L  R  I  D  L  T  Q  A  Q  Q  H  F  C  R  V  T  S  Y  I  V  *  H  I  Y  Y  H  C  N  L  S  S  K  *  L  K  A  R  Y  R  Q  *  K  I  R  T  K  *  D  C  Y  I  Q  W  Q  G  I  V  D  I  F  R  Q  E  S  T  H  *  Q  K  C  D  I  I  L  Y  V  *  *  N  N  T  V  T  K  L  E  I  L  S  T  V  F  N  R  L  Q  D   </first_frame>
            <second_frame>  R  M  I  L  Q  R  A  T  T  S  T  L  T  S  I  E  H  L  K  S  L  V  S  P  K  N  F  G  W  I  D  F  I  Q  I  A  K  V  V  N  Q  R :   V  K  I  V  P  P  T  E  L  L  L  L  L  *  W  I  T  W  L  E  Y  N  C  L  R  T  S  L  V  K  H  *  K  P  I  R  S  T  K  F  S  F  N   : G  S  R  L  R  N  V  E  D  I  H  R  L  P  R  N  Q  K  G  T  T  K  W  *  K  G  S  N  I  Q  R  L  Y  *  K  Q  N  *  K  T  F  E  N  D  T  F  K  *  V  L  S  M  L  K  *  K  H  K  E  R  I  L  L  *  N  *  R  Q  L  R  A  E  R  D  G  S  L  E  S  R  L  A  F  S  R  S  I  H  P  N  L  R  *  T  N  P  H  F  H  I  M  L  L  G  L  F  N  K  C  L  L  I  H  V  R  S  S  K  S  T  T  Y  I  F  *  E  S  I  *  H  R  R  N  N  I  F  A  E  L  R  A  I  *  S  S  T  Y  I  T  I  V  I  Y  P  Q  N  N  *  K  Q  D  I  D  N  K  K  L  E  P  N  K  I  V  I  Y  N  G  K  A  *  W  I  F  L  D  K  K  V  H  T  N  K  S  V  I  L  F  S  M  Y  S  K  T  T  Q  *  Q  S  *  K  F  Y  Q  R  Y  S  T  V  F  K  I  </second_frame>
            <third_frame>   E  *  Y  S  K  E  Q  Q  Q  V  H  *  L  Q  *  S  T  S  K  A  *  S  V  P  R  T  L  G  G  S  T  S  F  R  S  Q  K  *  *  I  R   : G  *  K  *  F  L  R  R  N  Y  F  F  C  C  S  G  L  L  G  *  N  T  I  A  *  E  Q  A  W  *  S  I  R  S  Q  *  E  V  Q  N  S  A  S  T  :  V  Q  D  *  G  T  *  R  T  F  T  G  F  Q  E  I  R  R  G  Q  R  N  G  E  K  V  R  T  Y  K  G  F  T  R  S  R  T  K  R  H  S  R  T  I  L  S  N  E  S  *  V  C  *  S  R  S  T  K  R  G  S  C  Y  E  T  E  G  S  *  E  R  K  E  M  V  L  L  N  H  D  *  H  S  R  G  A  F  I  L  T  L  G  K  P  I  H  I  F  T  L  C  C  S  D  S  S  T  N  V  S  *  Y  T  L  D  L  P  K  V  L  R  I  F  F  E  N  R  S  N  T  G  A  T  T  F  L  Q  S  Y  E  L  Y  S  L  A  H  I  L  P  L  *  F  I  L  K  I  T  K  S  K  I  *  T  I  K  N  *  N  Q  I  R  L  L  Y  T  M  A  R  H  S  G  Y  F  *  T  R  K  Y  T  L  T  K  V  *  Y  Y  S  L  C  I  V  K  Q  H  S  D  K  V  R  N  F  I  N  G  I  Q  P  S  S  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69256" stop="69381"/>
                    <exon start="69653" stop="69783"/>
                    <exon start="70364" stop="70595"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNDTPKSNNKYTNFNRAPQKLSQSQELWVDRLHSDRKSSESEGENSSSDGITSSVVVDYLARIQLLENKLGEALEANKKYKIQLQRFKTEERRGHSPASKKSEGDNEMVKRFEHTKALLEAELKDIRERYFQMSLKYAEVEAQREDLVMKLKAVKSGKRWFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="73353" PGL_stop="73839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73353" e_stop="73839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73353" e_stop="73839" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="73839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="73839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73357" stop="73814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTTAATCAAACCCTCTAAGTGTAGTTTTCTTTGTTTTTTGTAATTTTCGTTCGATGGATGAAGAGGAAGAACTACTGAGTAAACAGAAAAGAAAGCGTCAGAAATGATGGTCTTGGTGATGGTATTAGATGGGAACTACTATCATTCATGAAAATATTAGTCTTGATTAGTGATCATGAAGATATTAATCTTGATTAGTCCCATGGTGTAAGGTAATTAAGGGCAACTTCTATATCCTTTGGCATTTGAGTCTCTTGATAGGCTCTATCTCTCTATATATAAGAATTTAAATTTATGGTAAAAAAGACTAGCATTTTATGCTAATTATTTAGTCCTTTACTTATTATTTCTTATTTCAGTATTTTTCTTGTGTTTGTAAGCTACAAATAGTTAATGAATGAGTGTTTTGATGTATTATGCCTAATATGGCCAGAATAATAATGGTTTTAGTGATGTATTAATGCTTGGGTGTGTTTTTTGATAC</gDNA_template>
            <first_frame> *  L  N  Q  T  L  *  V  *  F  S  L  F  F  V  I  F  V  R  W  M  K  R  K  N  Y  *  V  N  R  K  E  S  V  R  N  D  G  L  G  D  G  I  R  W  E  L  L  S  F  M  K  I  L  V  L  I  S  D  H  E  D  I  N  L  D  *  S  H  G  V  R  *  L  R  A  T  S  I  S  F  G  I  *  V  S  *  *  A  L  S  L  Y  I  *  E  F  K  F  M  V  K  K  T  S  I  L  C  *  L  F  S  P  L  L  I  I  S  Y  F  S  I  F  L  V  F  V  S  Y  K  *  L  M  N  E  C  F  D  V  L  C  L  I  W  P  E  *  *  W  F  *  *  C  I  N  A  W  V  C  F  L  I  </first_frame>
            <second_frame>  N  L  I  K  P  S  K  C  S  F  L  C  F  L  *  F  S  F  D  G  *  R  G  R  T  T  E  *  T  E  K  K  A  S  E  M  M  V  L  V  M  V  L  D  G  N  Y  Y  H  S  *  K  Y  *  S  *  L  V  I  M  K  I  L  I  L  I  S  P  M  V  *  G  N  *  G  Q  L  L  Y  P  L  A  F  E  S  L  D  R  L  Y  L  S  I  Y  K  N  L  N  L  W  *  K  R  L  A  F  Y  A  N  Y  L  V  L  Y  L  L  F  L  I  S  V  F  F  L  C  L  *  A  T  N  S  *  *  M  S  V  L  M  Y  Y  A  *  Y  G  Q  N  N  N  G  F  S  D  V  L  M  L  G  C  V  F  *  Y </second_frame>
            <third_frame>   T  *  S  N  P  L  S  V  V  F  F  V  F  C  N  F  R  S  M  D  E  E  E  E  L  L  S  K  Q  K  R  K  R  Q  K  *  W  S  W  *  W  Y  *  M  G  T  T  I  I  H  E  N  I  S  L  D  *  *  S  *  R  Y  *  S  *  L  V  P  W  C  K  V  I  K  G  N  F  Y  I  L  W  H  L  S  L  L  I  G  S  I  S  L  Y  I  R  I  *  I  Y  G  K  K  D  *  H  F  M  L  I  I  *  S  F  T  Y  Y  F  L  F  Q  Y  F  S  C  V  C  K  L  Q  I  V  N  E  *  V  F  *  C  I  M  P  N  M  A  R  I  I  M  V  L  V  M  Y  *  C  L  G  V  F  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="75300" PGL_stop="75743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75300" e_stop="75743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="75300" e_stop="75743" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75300" stop="75743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAATTTTGATAAAAGAATCACATATACCCCTAAATAAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCGTTAAATAAAAGGTATATGTGAGCCATTTTGTAACGATAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGAGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  I  L  I  K  E  S  H  I  P  L  N  K  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  I  K  G  I  C  E  P  F  C  N  D  R  G  I  C  E  P  F  V  *  R  *  E  H  I  *  A  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  Q </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  K  F  F  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  F  *  *  K  N  H  I  Y  P  *  I  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  I  S  V  K  *  K  V  Y  V  S  H  F  V  T  I  G  V  Y  V  S  R  L  Y  N  G  K  S  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  *  M  T  K  L  R  G  I  S  D  P  F  P   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  T  Y  T  P  K  *  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  P  L  N  K  R  Y  M  *  A  I  L  *  R  *  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0017M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="94154" PGL_stop="94661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94154" e_stop="94661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="94154" e_stop="94661" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94154" stop="94661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319728" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA</gDNA_template>
            <first_frame> K  W  L  R  D  E  N  F  E  D  R  V  R  G  R  G  M  I  I  R  G  W  A  P  Q  V  L  I  L  S  H  P  S  V  G  G  F  L  T  H  C  G  W  N  S  A  L  E  G  I  S  R  G  V  P  M  T  T  F  P  M  F  A  E  Q  F  Y  N  E  K  F  I  V  N  I  L  K  T  G  V  G  V  G  V  E  V  S  T  T  S  W  N  E  E  K  S  G  V  L  V  S  K  D  E  V  K  R  A  I  N  Q  L  M  D  Q  G  L  E  G  E  E  R  R  K  I  A  K  D  L  S  H  I  S  K  K  A  I  Q  E  E  G  S  S  Y  L  N  I  K  L  L  I  E  D  V  M  H  V  L  K  N  K  E  E  I  E  *  I  L  K  </first_frame>
            <second_frame>  N  G  *  E  M  K  I  L  K  I  G  L  E  E  E  G  *  L  L  E  V  G  P  H  K  S  *  Y  Y  L  I  L  P  S  E  D  S  *  H  T  V  D  G  T  Q  H  *  K  G  S  L  V  A  C  Q  *  L  L  F  L  C  L  P  N  N  F  T  M  R  S  L  S  *  I  S  *  R  L  E  L  E  L  V  L  K  *  V  L  P  L  G  M  K  R  R  V  E  Y  W  L  A  K  M  K  S  K  E  Q  *  I  N  *  W  I  K  D  *  R  V  K  K  E  E  K  *  Q  R  I  C  H  I  F  Q  R  R  L  Y  K  K  K  V  L  H  T  *  I  S  N  Y  *  L  K  M  S  C  M  Y  S  K  I  K  R  K  L  N  R  F  *  R </second_frame>
            <third_frame>   M  A  K  R  *  K  F  *  R  *  G  *  R  K  R  D  D  Y  *  R  L  G  P  T  S  P  N  I  I  S  S  F  R  R  R  I  L  N  T  L  W  M  E  L  S  T  R  R  D  L  S  W  R  A  N  D  Y  F  S  Y  V  C  R  T  I  L  Q  *  E  V  Y  R  K  Y  L  E  D  W  S  W  S  W  C  *  S  E  Y  Y  L  L  E  *  R  E  E  W  S  I  G  *  Q  R  *  S  Q  K  S  N  K  S  I  N  G  S  R  I  R  G  *  R  K  K  K  N  S  K  G  F  V  T  Y  F  K  E  G  Y  T  R  R  R  F  F  I  L  E  Y  Q  I  I  D  *  R  C  H  A  C  T  Q  K  *  R  G  N  *  I  D  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0017M14.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94154" stop="94651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLRDENFEDRVRGRGMIIRGWAPQVLILSHPSVGGFLTHCGWNSALEGISRGVPMTTFPMFAEQFYNEKFIVNILKTGVGVGVEVSTTSWNEEKSGVLVSKDEVKRAINQLMDQGLEGEERRKIAKDLSHISKKAIQEEGSSYLNIKLLIEDVMHVLKNKEEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 167 chains have been computed
$ 
$ memory statistics:
$ 373368 bytes spliced alignments in total
$ 97 spliced alignments have been stored
$ 3849 bytes was the average size of a spliced alignment
$ 28240 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1486 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 212 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 00:03:27
-->
