<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 01:35:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0019J03-QcIER/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-HxCbrK/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HxCbrK/sgn_marker_seqs" ref_id="SGN-M8558" ref_strand="+" ref_description="SGN-M8558 C2_At5g03345 [cosii_markers]">
      <seq>cccgaatagaaatacggatctacgctgctaaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttaaattttagttttggatgttaaagactcgaattttcagaacatatctcatagtgtctattaccatttattctctatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-QcIER/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0019J03.2" temp_strand="-" temp_description="C09SLe0019J03.2  EF647610.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0019J03 upload_account_name:spain">
        <position start="13601" stop="8488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13301" g_stop="13096" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13095" i_stop="13008" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13007" g_stop="12955" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12954" i_stop="12372" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12371" g_stop="12271" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="360" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12270" i_stop="9143" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9142" g_stop="8788" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="715" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.2" gen_strand="-" ref_id="SGN-M8558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13301" e_stop="13096"/>
          <exon e_start="13007" e_stop="12955"/>
          <exon e_start="12371" e_stop="12271"/>
          <exon e_start="9142" e_stop="8788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATG</genome_strand>
        <mrna_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGGATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTACCATTTATTCTCTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13301" PGL_stop="8788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13301" e_stop="13096"/>
            <exon e_start="13007" e_stop="12955"/>
            <exon e_start="12371" e_stop="12271"/>
            <exon e_start="9142" e_stop="8788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.990"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13301" e_stop="13096" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13095" i_stop="13008" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13007" e_stop="12955" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.955">
            <gDNA_intron_boundary i_start="12954" i_stop="12372" i_length="583"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="12371" e_stop="12271" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12270" i_stop="9143" i_length="3128"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="9142" e_stop="8788" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="13096"/>
              <exon start="13007" stop="12955"/>
              <exon start="12371" stop="12271"/>
              <exon start="9142" stop="8788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT : ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT : GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAG : GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATG</gDNA_template>
            <first_frame> P  E  *  K  Y  G  S  T  L  L  N  L  Q  S  T  T  S  *  S  R  F  S  S  L  L  L  D  L  R  R  Q  K  S  S  S  P  A  A  D  L  F  S  D  Q  D  G  C  R  F  P  R  W  R  H  R  R  S  N  S  I  S  C  Y  L  F  H  N  P  I :   *  G  F  A  *  D  Y  *  G  G  V  F  W  T  T  H  *   : C  C  Y  R  I  D  S  *  F  S  V  M  L  V  G  C  N  G  C  P  W  K  F  Q  V  N  P  S  S  I  *  G  K  Q  :  G  G  R  F  A  C  Q  S  G  F  H  D  L  *  S  P  R  E  N  I  S  S  G  N  R  F  E  V  E  V  M  A  T  L  Q  T  R  P  I  F  R  D  C  S  W  R  G  *  F  *  T  V  L  L  L  H  *  F  N  Y  L  S  S  T  S  R  P  V  D  R  *  L  L  E  S  R  Q  K  K  R  H  S  V  C  T  F  S  F  L  L  A  *  I  L  V  L  Y  V  K  D  S  N  F  Q  N  I  S  H  S  V  Y  *  H  L  F  S  I  Y  </first_frame>
            <second_frame>  P  N  R  N  T  D  L  R  C  *  I  F  K  V  Q  P  A  K  A  D  L  A  H  F  Y  L  I  S  A  V  K  N  L  L  H  R  P  P  I  Y  S  P  T  K  M  G  A  G  F  L  V  G  V  I  G  V  L  I  L  S  H  A  T  Y  S  T  I  Q   : Y  R  A  L  L  K  I  T  E  E  E  F  S  G  P  P  I  D  :  V  V  I  E  L  I  V  S  L  V  L  C  L  W  A  A  M  A  A  P  G  N  F  K  S  I  H  P  Q  S  E  E  N  R :   V  V  A  L  P  A  N  L  D  F  M  I  F  N  H  R  G  K  I  F  P  L  E  T  D  L  K  L  K  *  W  P  P  S  R  P  D  P  S  F  A  T  V  L  G  E  D  S  F  R  Q  F  S  Y  Y  T  N  S  I  T  *  A  A  L  V  D  L  W  I  V  D  C  *  R  A  D  R  K  K  D  T  Q  F  A  H  F  H  F  C  L  L  K  F  *  F  C  M  L  K  T  R  I  F  R  T  Y  L  I  V  S  I  S  I  Y  S  L  S  M </second_frame>
            <third_frame>   R  I  E  I  R  I  Y  A  A  K  S  S  K  Y  N  Q  L  K  Q  I  *  L  T  F  T  *  S  P  P  S  K  I  F  F  T  G  R  R  S  I  L  R  P  R  W  V  P  V  S  S  L  A  S  S  A  F  *  F  Y  L  M  L  P  I  P  Q  S  N  :  I  G  L  C  L  R  L  L  R  R  S  F  L  D  H  P  L  M :   L  L  S  N  *  *  L  V  *  C  Y  A  C  G  L  Q  W  L  P  L  E  I  S  S  Q  S  I  L  N  L  R  K  T   : G  W  S  L  C  L  P  I  W  I  S  *  S  L  I  T  A  G  K  Y  F  L  W  K  P  I  *  S  *  S  D  G  H  P  P  D  Q  T  H  L  S  R  L  F  L  E  R  I  V  L  D  S  S  P  I  T  L  I  Q  L  L  E  Q  H  *  S  T  C  G  S  L  I  V  R  E  Q  T  E  K  K  T  L  S  L  H  I  F  I  F  A  C  L  N  F  S  F  V  C  *  R  L  E  F  S  E  H  I  S  *  C  L  L  A  F  I  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13270" stop="13096"/>
                    <exon start="13007" stop="12955"/>
                    <exon start="12371" stop="12271"/>
                    <exon start="9142" stop="9052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKVQPAKADLAHFYLISAVKNLLHRPPIYSPTKMGAGFLVGVIGVLILSHATYSTIQYRALLKITEEEFSGPPIDVVIELIVSLVLCLWAAMAAPGNFKSIHPQSEENRVVALPANLDFMIFNHRGKIFPLETDLKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 01:36:03
-->
