<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 01:43:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313551" ref_strand="+" ref_description="SGN-U313551        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | alcohol dehydrogenase class III / glutathione-dependent formaldehyde dehydrogenase / GSH-FDH (ADHIII), identical to gi:1143388 | chr5:17701421-17704165 FORWARD | Aliases: MRH10.4, MRH10_4(evalue: 1e-72, score=269) genbank/nr: alcohol(evalue: 4e-81, score=303)">
      <seq>ttattggaaatgatattgtcagcaaaaagtttgatagagccgggaattttggtgtgactgaattccccactcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttgcataaatggaatcctccccttttccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="1" stop="1301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="131" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="197" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="1005" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="749" r_length="390" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U313551" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="1005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTC------AAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCT-CCCTTTTCCAAAGTAG</genome_strand>
        <mrna_strand>CCACTCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCCTTTTCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334446" ref_strand="-" ref_description="SGN-U334446        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | alcohol dehydrogenase class III / glutathione-dependent formaldehyde dehydrogenase / GSH-FDH (ADHIII), identical to gi:1143388 | chr5:17701421-17704165 FORWARD | Aliases: MRH10.4, MRH10_4(evalue: 5e-24, score=108) genbank/nr: alcohol(evalue: 1e-29, score=133)">
      <seq>aagctttcgacctgatgcatgtcggggactgcctccgtgttgtcctggatatgtttgtatgaatgaagtctgtaggctctttatgttgcttactttctgtttttgtgctatttctcagagactatttacctttccccttgctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaacacttttaaaatggacggtagtttattatcttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="364" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="664" g_stop="898" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="236" polyA_stop="252"/>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U334446" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334446" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="664" e_stop="898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAA</genome_strand>
        <mrna_strand>AAGCTTTCGACCTGATGCATGTCGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACACTTTTAAAATGGACGGTAGTTTATTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319602" ref_strand="+" ref_description="SGN-U319602        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains non-consensus donor splice site AT at exon 4 and acceptor splice site at exon5; Contains similarity to serine/threonine protein phosphatase gb:X83099 from S. cerevisiae, SP:O95801 Tetratricopeptide repeat protein 4 Homo sapiens; contains Pfam profile PF00515: TPR Domain | chr1:1073427-1075546 FORWARD | Aliases: F20D22.10, F20D22_10(evalue: 1e-123, score=330) genbank/nr: gi|18379248|ref|NP_563702.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana](evalue: 8e-122, score=330)">
      <seq>aagtaccggcaatcaaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagaggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacattagacaaaaataatattcttcattgggcagttcttcttctgtatccagaggtcatgtccagtgacttcatagaggagttctgtgagaccgacatgttttcagctcatcttgatatgatgtttttcagaaggttgtccacctcttccttgggacaaagaaaatgcttacactcgtgatgctgttgagttgtattatgaggctggtgctggtgtctgtttatccaagcgggatattcttcggtatctgctggaaggaacacctgcttctcatgtggaagactttggtgatgaggagagcgcttctgctcagagttcaaccaagggtagcatttcactagatgtccctggatgggttaaaattaatgagaagacaacactttataatgttctaaaggaaccgcggtgtgtagttcctgggcttcctgtgttttgggttgtctcgaggaactcaagcttctatgatgagttcaaatctggaaattggtcttctccaaaacttccatgaatttgtcgtggagttgcaagtccattttgagttcctactgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcatttgatataagttcattttgtccatgtagagagcagagtgttagggtacttgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttgaaggaaattatgggggagaaggtgatcatgtagagaacttaaatatgttatctaatgatttatttcgttgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="10142" stop="2289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9842" g_stop="9713" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="344" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="536" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5787" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="737" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5786" i_stop="5622" i_length="165">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5621" g_stop="5541" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="819" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5540" i_stop="4031" i_length="1510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4030" g_stop="3892" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="958" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3215" g_stop="3129" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1045" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3030" g_stop="2590" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1486" r_length="441" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1487" polyA_stop="1496"/>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U319602" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1484</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9842" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5787"/>
          <exon e_start="5621" e_stop="5541"/>
          <exon e_start="4030" e_stop="3892"/>
          <exon e_start="3215" e_stop="3129"/>
          <exon e_start="3030" e_stop="2590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACCGGCAAT-AAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATGATATCCTTTGTTATATATAGATACAAAAATGACAAACTCAAATTGTTAAACCAAATGTGATTCTCTCTGTGTTATCACCAGCTTGACTATCATTCTTATGTAACTAAAGCAAACTATTGTTTTTCCATTATCTTGAAGGATTTTGTTCATCCTTAGCTTCCGCACATG-TTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAGGTATATAATATTACATTATCTATCGTTGCTTTATTTTTTGTACTTCTTCCATTTCTCATGTTGTTCGGAGAATCACCCAATTGCATATTCAAAAGCATCCACTGGGCTCCATTGAACATGATATTCCACTACATAGATGGACAACATACTGCTGTGTGTTCAAAATCTGGCACATTAACTTAAAAAGATTTTCATTACAATGAAGTCTAAATAAAAAGACACTCCTATTGTTGTTGATTGAATTTGTGGTTTGGCTTGACAAAATTAATAGGATTACTGCTGAACTTTTTCATGTTTGAACTTTGAAGTCAATTGAATAAATATGTGTAGGTACAACTTGCTTTGTGGTTATGTATGATCTGGTTGGCAAATTGAAAGTAGGCATCAGAGTAGATCTCTACTAAAAAGTCAAATAACACCCTAAATGAAACTACATTACTTTGCATCAGTCTAAGAGGTGCATTGCCCTAGAATTTTTGATCATTTGTACTTCACAAGGGAATGGCAAGCCTTGTGAAAAAATCTATTATGAAATTGGTCATATAGCCACCACATTTAATTGAGAATGAAGGAACTTTAGATACGTAGTAGCGTTATGTAGGAGGCTGGGGCACCGGCCTCTTTAGGACTTGAAATATTTCATCTGGGTAGTGTAATCAGTTTTATAAACTGCTTATTCATTCCATTTTTGTGCCCCCCATAAGATGGAGGAATCAGGATTTGTTTTGTTTACAGTGTTGTCCATTGTTAAGTAGTCTTTGATACTCATCTAAAGGGAAAATATTCCATGAGAGATCATTTTTGTACCTTTATGTTCACATGATTATTAAGAAATATTGCATATCATAAAGCTGTCATGTTGAGTTGCTGTTCATTTTTTTTTCTGCGCTTGCTTTTTGGTTGATGCTGGCCAACTGGAACTTTTTACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCCATTTTCGACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCTATTTTCTACTGACTTTGTAGTCCAAATGATAGCAACTGTGCAGTTTCTGAATGCTCGTATAATGTGCTTGAGTTATTGGGGTAAAGACTGGGTTCTAGATTTGATATTTCATCCTTCAGTCATTTATTCTATCCTTAGGTTAGATGTCTGACTAGGTGTAGATTGTTAAGGTGGTTTTTGATAATTATTATGGTCCCTATTGATACATCTTTCGATCCTCTTAACTACACTTACTTAAGGTCGTGTAGTAGACTGGTGAGGCCAAGAATAATCCAATATTTGTCTAATATCTGTTTGACTCGAATTTTCATGCCAAATATGCAATTTCATTGGTAACTGTTGTAGTTGATTAGAGGGTTTCGCAATAGTGTGTCTATCAGGGATCATCTGTTAGTTTCCGGTTAATAAGCTCTTAGTGCTTTCTTGTTTAGTGCCACCAGTTGATGTTGCTGTAATATGCTTCTCTGTTCTGAACTTGTGATTGAGCAGGCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAGGTACACTTCCCCATCTCTCTATTTCAACTGATGAGAATTAGGGAAGCTTTTCTCTCAAGATTATTGCAATTTCTAGTAGAACTGCTGCCTAGTGTCAGAAACAAGGGATCCATTGTACTAATTCAAAACACAGCAGATTATAGTGTGTGCTCTTCTTTGGTGGTATGGTAGAAGGGATTTCCATTGTTTGGGTTCAGCCTTTCCTTTTTAAAAATAATATTTGAACTTCATCACATTGTTTATTTGAGTATAATGAAACATAATGCAACTTTTCATTTTAAAATATGATGATTTGCACTCCATTGCTGACTTTATATGTCTATGGATGGAATAATATCCTAATAAGAAGTAGTTCATACAACTAGGATGTTTCACTTGTTATATAAAATTGACATGCTATTCAGCAGGTAGATATTACAGTCATGGTTCAAATGTAAAAATGGAGTGTTTGTGCAGTAAAATATTCAATACCCTTAATCTAGAGGCAGATAATGTGCTGTGCCTCTTCTGTTCTGTTAAAAATATAGTAAATGTTGATGCACATAACTCGGTTTTTTCTCCCCCTTTTGCCTTGATTCAATGTGAATGACCTTGTTCAATCTTTTTTTAAGCCTTCACTATCGTTTTATGGACTTATTCTGTTCTTATTTTTTCTTCACTCAATTCTTTTCTGCAGATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTGGTATGAGTTTATTTCCTTAGATGTATTTGCACTCTATGCAGACTGCAGTTCTATCACTCTAATCTAATGTAAGATTATTTTCTTATCCTTTGCTATAGTGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTTGCTCC</genome_strand>
        <mrna_strand>AAGTACCGGCAATCAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATG.....................................................................................................................................................................ATGTTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACACCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG..................................................................................................TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATGATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCCATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTACTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTTGATATAAGTTCATTTTGTCCATGTAGAGAGCAGAGTGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTGAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAGAACTTAAATATGTTATCTAATGATTTATTTCGTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="19479" stop="18549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19179" g_stop="18849" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19179" e_stop="18849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAACTCATATCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTACACACCTTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGGAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="18579" stop="19839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18879" g_stop="19539" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18879" e_stop="19539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTCCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTAATAGTTGAAAAGGTGTGTAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGATATGAGTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCTACTCCAGTTCGTATCATCTCCTTCCTTCGCGCTAAGAAAATGGTTAGAAAGGGTTGTTTAGCTTTCTTCGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGACGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGATCTTCCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328094" ref_strand="+" ref_description="SGN-U328094        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-65, score=251)">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="21284" stop="20098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20984" g_stop="20398" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U328094" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20984" e_stop="20398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="21729" stop="20588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21429" g_stop="20888" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21429" e_stop="20888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAAGTTAGAAGTAAACTGTGTACCTCTATCTGATATGATGGAGAGTGGGACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAGTCGGTCAACGATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTTCTTTAGGTCATGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340351" ref_strand="+" ref_description="SGN-U340351        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cctgaagcttctcccatagattctggatattttgttgacttctgaatgttggtggtgtccttgacgaaacatggccttctggtttcttcaaagttttttcttttaaaaacaaaattaggaatgcttctcccatttaaagggtagcaaggtacatagggttaaagagttagggttaacaggttaagttttcttctggtgtacaactgcttttgtttctgaaacacaaacaaatccattcacctgtaaatggtactaatctcttatgttatgctatctaaatgacagctttttttctcaaaaactgattctagttaagagatgtgatatacaattgtcaatttttatgaatatctgtggcctggaacttattggttttgtgggttttaccagttttgcaacagttaaaaaattcatctgtacttggtgctaatttcttatgtaaagctaacttaatagcagctgttttcacttgaaaatggactagtcaagatatgatttacaatttttttttaaaaatggatatctgtgctttgcctggacctcaatggttttattgatgactangtttgtaacagttgaggaattaaccttgtatctgctgggcaacaacactgatggttaggtgattcntgcctgctgtctaagtcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="27770" stop="26519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27470" g_stop="26819" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U340351" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27470" e_stop="26819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAATTAGGGTTAACAGGTTCAGTTTTCTTCTGGTGTA-AACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGCTTTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTAGTTTTGTAACAGTTGAGGAATTAACCTTGTATTTGCTGGGCAACAACACTGATGGTTAGGTGATTCTTGCCTGCTGTCGAAGTCTTGCT</genome_strand>
        <mrna_strand>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAGTTAGGGTTAACAGGTTAAGTTTTCTTCTGGTGTACAACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGC-TTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTANGTTTGTAACAGTTGAGGAATTAACCTTGTATCTGCTGGGCAACAACACTGATGGTTAGGTGATTCNTGCCTGCTGTCTAAGTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343738" ref_strand="+" ref_description="SGN-U343738        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgagaaattacattcatatttataagtataagtgtataacttatatcatttggtcatttggtgtatttcccaggaggaatcttcttcaaatttcaagtttcgacatcaatattttaattttcattataatcgtttgttcttatacaaacgtttggtaacttcgttccactctctaatcttatatttattttttgtatttattatttaacttgtaagttgttcttgttaagtttcgtattttataatttataattttatatcatggagtcttctaaaaaaagtggaagtaaaaaaggtctagtagaatcagtaaaaaaattagttaaaaaaactaacaaaggtgctagttcgtctaaatctaaaattcctcttgttagaataaatacagatgaatttacgcatgtgaatgaaactagtttttcccgtcccggtcctataaatattaattcagatagtccgactccccatgaactctatgaaagatattatggtattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="63268" stop="62183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62946" g_stop="62483" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="501" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U343738" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62946" e_stop="62483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTTAATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</genome_strand>
        <mrna_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCCCAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="76867" stop="77751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77166" g_stop="77451" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77166" e_stop="77451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGTTCGTTGTTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTATTTCTTTTGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="77225" stop="78378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77525" g_stop="78078" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77525" e_stop="78078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAACAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGTCACCTCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="79880" stop="78522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79580" g_stop="78822" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79580" e_stop="78822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTGAAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATATGAACCAGATTGGAAGTGTAGTCGCCCTCCCACAATAACGGATCTGTCCCAGACTAGGCTAACGCCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTATATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAATATACATATGAAAATGTGGA-GCCGGGATCAAATAATACAGCAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCT-CCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="81943" stop="81166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81643" g_stop="81467" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81643" e_stop="81467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAATTCCTCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAACATATCCTCCAACACTTGGATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326560" ref_strand="+" ref_description="SGN-U326560        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT2G20340.1 | Symbol: None | tyrosine decarboxylase, putative, similar to tyrosine/dopa decarboxylase (Papaver somniferum) GI:3282527, SP:Q06087 Tyrosine decarboxylase 3 (EC 4.1.1.25) {Petroselinum crispum}; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr2:8786816-8789853 FORWARD | Aliases: F11A3.11, F11A3_11 (evalue: 2e-63, score=238) genbank/nr: gi|30680963|ref|NP_849999.1| tyrosine decarboxylase -related [Arabidopsis thaliana] gi|18491209|gb|AAL69507.1| putative tyrosine decarboxylase [Arabidopsis thaliana] gi|20465925|gb|AAM20115.1| putative tyrosine decarboxylase [Arabidopsis thaliana](evalue: 1e-61, score=238)">
      <seq>gcacgagggtaaatgtaacgtgggacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaaaccggtgtttcattctccgtctccacaaagctttcacacatttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgagagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgaaaatttcccagttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagatgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatattttccttcaaatagtagtgtggctggatttttgggagaaatgctcagtgccgggattaacatggtgggctttagttggataacttctccagcagcgacagaacttgaaatgatcgttctggattggcttgctaaagcacttaagttgcctgatgaattcctttcaacaggttgtgtactaatattggtgcaagttaagcaaaaagtcgggagagagaagatagaaccatatgtttataagctgattgaaagatggaagatcacttaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="84860" stop="87392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85157" g_stop="85285" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85286" i_stop="85370" i_length="85">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85371" g_stop="85491" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="247" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85492" i_stop="86231" i_length="740">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86232" g_stop="86304" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="320" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86305" i_stop="86554" i_length="250">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86555" g_stop="86785" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="551" r_length="231" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86786" i_stop="86990" i_length="205">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86991" g_stop="87092" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="653" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U326560" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85157" e_stop="85285"/>
          <exon e_start="85371" e_stop="85491"/>
          <exon e_start="86232" e_stop="86304"/>
          <exon e_start="86555" e_stop="86785"/>
          <exon e_start="86991" e_stop="87092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATC-AAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAGGTAACATAACGGTTTGACTTTAGCTTCTTTTTCTTCTAAAAAGCTGCATGGCTTTTGCCTTCCAATCCAGCAATCAAAAATGGTTGAATCATAGATTTCTGCGAAAAATTTGTCAGTTCGAATCCTTATTGCGACAAAGTAAAAATTTGAAACTAGAAGCAACTTGTTCTCTTGAAGCTCACTTAGTCTTGAGTTTTGGTTAAAAGTTGTGTACTAAATTTTGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATTGAAGATCACTTAAATAT</genome_strand>
        <mrna_strand>GCACGAG--GGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAAACCGGTGTTTCATTCTCCGTCTCCACAAAGCTTTCA--CACATTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGAGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAAAATTTCCCAGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG..........................................................................................................................................................................................................................................................ATGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTTTGGGAGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGCACTTAAGTTGCCTGATGAATTCCTTTCAACAG.............................................................................................................................................................................................................GTTGTGTACTAATATTGGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATGGAAGATCACTTAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="91094" stop="91871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91394" g_stop="91570" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91394" e_stop="91570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="91868" stop="93180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92168" g_stop="92880" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92168" e_stop="92880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="92388" stop="93646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92688" g_stop="93346" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92688" e_stop="93346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="94444" stop="92440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94144" g_stop="93972" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93971" i_stop="93268" i_length="704">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93267" g_stop="92740" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94144" e_stop="93972"/>
          <exon e_start="93267" e_stop="92740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGATCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAATCCACAAGATCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGACATCGACATAAAAAGAGGTTTCGAAAAGGAGGTGAGTTTAATGGTTCTTACTCTACAGGACAGGGTTCCGGAGGTTACTAAGTTCGACCCATTCAGTCTTCACTACATACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTAAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGGTGGTCACCAAAATGGCCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGTACAAACAAACGAAAGGGCCCATTGTTATGCTTTCTCTGGGAGATCGGAGGCGGAGACATCTGATGTTGTCATCACAGGTAATCTTCTGGTTTGTGATCGCATGGCTTTTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTTATTTGCTAATGGTCTAAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATTTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTTATCTTGAACCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="92457" stop="93814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92757" g_stop="93514" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92757" e_stop="93514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAGAAGATTACCTGTGATGACAACATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="92860" stop="93786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93160" g_stop="93490" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93160" e_stop="93490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="95072" stop="93919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94772" g_stop="94219" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94772" e_stop="94219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTATGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCATCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATCGGACATAGGCACGTTTCCACGTCTGCCTACTGGGGCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAACGTGGTGGCGGTCACATGCTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="94107" stop="95140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94407" g_stop="94839" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94407" e_stop="94839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGCCCCAGTAGGCAGACGTGGAAACGTGCCTATGTCCGATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGATGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCATAGCATCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGTTTTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="95431" stop="94546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95131" g_stop="94846" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95131" e_stop="94846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315285" ref_strand="+" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcatttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="-" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="96788" stop="94546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96488" g_stop="94886" g_length="1603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1614" r_length="1614" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="-" ref_id="SGN-U315285" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>1603</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96488" e_stop="94886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTATGTATTTTTAGCTTCTTAGAA-ACTCTTAGATTTAGTAATTTGA-AGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAAT--A-G-T-AA--TT-GAA--T--TG-GTT--T-T-TA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGAATACTCATAG-TTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAAC-CCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTC--T-T-TC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Xd6kYn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-HfMnm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0066M20.1" temp_strand="+" temp_description="C09SLe0066M20.1  AC216910.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 108242)">
        <position start="101979" stop="102756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102279" g_stop="102455" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102279" e_stop="102455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="131"/>
            <exon e_start="358" e_stop="519"/>
            <exon e_start="609" e_stop="1005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="1" e_stop="131" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="358" e_stop="519" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.907">
            <gDNA_exon_boundary e_start="609" e_stop="1005" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="1005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="664" stop="898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334446" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG : GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG : GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCTTTTCCAAAGTAG</gDNA_template>
            <first_frame> L  I  P  R  S  M  S  N  P  F  S  K  S  L  W  I  L  L  M  V  V  L  I  T  V  L  S  A  *  E  M  S  L  L  *  G  L  L  *  S  V  V  T  R :   V  G  E  P  Q  *  L  *  V  L  L  L  L  V  R  R  Y  L  H  V  H  F  S  W  *  L  V  V  F  G  R  E  L  L  L  V  V  S  K  A  D  H  K  F  L  P  S  W  T  S  I  *  R  R :   K  S  R  W  M  N  T  S  L  I  T  *  H  L  R  T  *  T  K  L  S  T  *  C  M  T  G  T  A  S  V  L  S  W  I  C  L  Y  E  *  S  L  *  A  L  Y  V  A  Y  F  L  F  L  C  Y  F  S  E  T  I  Y  L  S  P  C  *  L  C  V  E  *  K  E  S  E  K  K  R  I  K  M  T  D  E  L  F  L  N  G  W  *  F  I  I  F  S  S  K  M  F  L  L  *  R  L  K  P  S  L  L  V  L  E  F  G  I  N  H  C  H  V  C  I  N  G  I  L  P  F  P  K  * </first_frame>
            <second_frame>  *  S  Q  G  A  *  A  T  H  S  A  S  H  C  G  S  Y  *  W  W  C  *  L  Q  F  *  V  H  R  K  C  L  C  Y  E  V  C  F  R  V  L  S  Q   : G  L  G  N  L  S  D  C  R  C  C  C  F  W  S  G  D  I  Y  T  S  I  S  A  G  D  W  S  C  L  E  G  N  C  F  W  W  F  Q  K  P  I  T  S  S  F  P  R  G  Q  V  F  K  E   : G  N  Q  G  G  *  I  H  H  S  *  H  D  T  C  G  H  K  Q  S  F  R  P  D  A  *  R  G  L  P  P  C  C  P  G  Y  V  C  M  N  E  V  C  R  L  F  M  L  L  T  F  C  F  C  A  I  S  Q  R  L  F  T  F  P  L  A  N  Y  V  L  N  K  K  K  V  R  K  K  G  S  R  *  Q  M  N  S  F  *  M  D  G  S  L  L  S  F  Q  V  K  C  S  Y  F  E  G  *  N  H  H  Y  W  F  *  S  L  A  *  T  I  A  M  F  A  *  M  E  S  S  L  F  Q  S   </second_frame>
            <third_frame>   N  P  K  E  H  E  Q  P  I  Q  Q  V  I  V  D  L  T  D  G  G  V  D  Y  S  F  E  C  I  G  N  V  S  V  M  R  S  A  L  E  C  C  H  K  :  G  W  G  T  S  V  I  V  G  V  A  A  S  G  Q  E  I  S  T  R  P  F  Q  L  V  T  G  R  V  W  K  G  T  A  F  G  G  F  K  S  R  S  Q  V  P  S  L  V  D  K  Y  L  K  K  :  E  I  K  V  D  E  Y  I  T  H  N  M  T  L  A  D  I  N  K  A  F  D  L  M  H  D  G  D  C  L  R  V  V  L  D  M  F  V  *  M  K  S  V  G  S  L  C  C  L  L  S  V  F  V  L  F  L  R  D  Y  L  P  F  P  L  L  I  M  C  *  I  K  R  K  *  E  K  K  D  Q  D  D  R  *  T  L  F  K  W  M  V  V  Y  Y  L  F  K  *  N  V  L  T  L  K  A  K  T  I  I  T  G  F  R  V  W  H  K  P  L  P  C  L  H  K  W  N  P  P  F  S  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3" stop="131"/>
                    <exon start="358" stop="519"/>
                    <exon start="609" stop="725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKAFDLMHDGDCLRVVLDMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9842" PGL_stop="2590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9842" e_stop="9713"/>
            <exon e_start="6577" e_stop="6365"/>
            <exon e_start="6257" e_stop="6066"/>
            <exon e_start="5987" e_stop="5787"/>
            <exon e_start="5621" e_stop="5541"/>
            <exon e_start="4030" e_stop="3892"/>
            <exon e_start="3215" e_stop="3129"/>
            <exon e_start="3030" e_stop="2590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.969"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.979"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.975"/>
          <exon-intron don_prob="0.910" acc_prob="0.992" e_score="0.986"/>
          <exon-intron don_prob="0.883" acc_prob="0.688" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="9842" e_stop="9713" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="6577" e_stop="6365" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="6257" e_stop="6066" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="5987" e_stop="5787" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5786" i_stop="5622" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="5621" e_stop="5541" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="5540" i_stop="4031" i_length="1510"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="4030" e_stop="3892" e_length="139"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.992">
            <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3215" e_stop="3129" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.688">
            <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="3030" e_stop="2590" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9842" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5787"/>
              <exon start="5621" stop="5541"/>
              <exon start="4030" stop="3892"/>
              <exon start="3215" stop="3129"/>
              <exon start="3030" stop="2590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTACCGGCAATAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAG : GAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG : GCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAG : ACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATG : ATGTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAG : GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAG : ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG : TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTTGCTCC</gDNA_template>
            <first_frame> K  Y  R  Q  *  K  L  N  N  G  V  M  D  G  G  R  F  *  T  *  N  R  E  R  I  G  *  P  *  C  Y  L  R  S  Q  R  V  Y  C  F  *  T  *   : G  T  R  *  *  T  C  Q  E  R  E  E  A  L  L  G  C  Y  *  L  L  Y  K  G  N  K  S  E  C  F  K  *  C  *  A  V  N  S  L  F  K  Q  S  S  C  Q  S  S  L  G  E  L  *  T  C  T  P  G  C  G  R  C  N  Q  I  K  S  K  *  C  *   : G  S  L  S  S  S  K  S  I  I  F  S  E  S  S  G  *  S  K  R  A  L  R  E  R  S  S  A  L  V  I  K  *  R  T  E  E  A  C  *  A  H  R  Y  T  E  I  R  N  G  S  S  *  C  *  R  V  *  S  S  I  F  C  *   : D  H  C  F  C  I  *  D  *  R  I  E  D  C  E  A  H  V  S  R  T  H  W  T  K  K  T  N  I  R  Q  K  *  Y  S  S  L  G  S  S  S  S  V  S  R  G  H  V  Q  *  L  H  R  G  V  L  *  D  R  H  V  F  S  S  S  *  Y   : D  V  F  R  R  L  S  T  S  S  L  G  Q  R  K  C  L  H  S  *  C  C  *  V  V  L  *   : G  W  C  W  C  L  F  I  Q  A  G  Y  S  S  V  S  A  G  R  N  S  C  F  S  C  G  R  L  W  *  *  G  E  R  F  C  S  E  F  N  Q  G  *  H  F  T  R :   C  P  W  M  G  *  N  *  *  E  D  N  T  L  *  C  S  K  G  T  A  V  C  S  S  W  A  S  C :   V  L  G  C  L  E  E  L  K  L  L  *  *  V  Q  I  W  K  L  V  F  S  K  T  S  M  N  L  S  W  S  C  K  S  I  L  S  S  Y  C  L  A  S  T  L  N  V  Q  N  T  P  F  R  V  *  *  Y  N  W  G  S  F  D  I  S  S  F  C  P  C  R  E  R  S  V  R  V  L  A  H  I  L  *  I  S  S  C  A  N  L  S  K  V  S  V  F  C  G  C  K  I  M  G  R  K  V  I  M  F  T  C  *  Q  N  E  A  S  F  C  H  L  L  K  E  I  M  G  E  K  V  I  M  *  K  T  *  I  C  Y  L  M  I  Y  F  V  A   </first_frame>
            <second_frame>  S  T  G  N  K  S  L  T  M  A  L  W  M  E  A  G  S  E  P  K  T  E  K  E  L  A  D  L  D  A  I  S  A  L  K  E  S  T  A  F  E  L  K  :  E  L  G  N  E  H  V  K  K  G  K  K  H  Y  S  D  A  I  D  C  Y  T  R  A  I  N  Q  N  A  L  S  D  A  E  Q  S  I  L  Y  S  N  R  A  H  V  N  L  L  L  G  N  Y  R  R  A  L  Q  D  A  E  D  A  I  K  L  N  P  S  S  V  K  :  A  L  Y  R  A  A  K  A  S  F  F  L  N  L  L  A  E  A  K  G  L  C  E  K  G  L  Q  L  S  S  S  S  E  E  L  K  K  L  A  R  H  I  D  I  Q  K  S  E  M  D  R  R  D  A  E  E  S  K  A  V  S  S  A  K  :  T  I  V  S  A  F  E  T  R  G  L  K  I  A  K  P  M  Y  Q  E  L  T  G  L  R  K  P  T  L  D  K  N  N  I  L  H  W  A  V  L  L  L  Y  P  E  V  M  S  S  D  F  I  E  E  F  C  E  T  D  M  F  S  A  H  L  D  M  :  M  F  S  E  G  C  P  P  L  P  W  D  K  E  N  A  Y  T  R  D  A  V  E  L  Y  Y  E  :  A  G  A  G  V  C  L  S  K  R  D  I  L  R  Y  L  L  E  G  T  A  A  S  H  V  E  D  F  G  D  E  E  S  A  S  A  Q  S  S  T  K  G  S  I  S  Q   : D  V  P  G  W  V  K  I  N  E  K  T  T  L  Y  N  V  L  K  E  P  R  C  V  V  P  G  L  P   : V  F  W  V  V  S  R  N  S  S  F  Y  N  E  F  K  S  G  N  W  S  S  P  K  L  L  *  I  C  R  G  V  A  S  P  F  *  V  P  I  V  L  Q  V  H  S  M  Y  K  T  L  R  S  V  F  D  N  I  T  G  V  H  S  I  *  V  H  F  V  H  V  E  S  G  A  L  G  Y  L  L  I  F  C  R  L  A  A  V  Q  I  S  L  R  F  Q  F  F  V  D  V  K  L  W  E  G  R  *  L  C  L  P  V  N  K  M  K  H  L  F  V  I  C  *  R  K  L  W  G  R  R  *  S  C  R  K  L  K  Y  V  I  L  *  F  I  S  L  L  </second_frame>
            <third_frame>   V  P  A  I  K  A  *  Q  W  R  Y  G  W  R  Q  V  L  N  L  K  Q  R  K  N  W  L  T  L  M  L  S  P  L  S  K  S  L  L  L  L  N  L  R :   N  *  V  M  N  M  S  R  K  G  R  S  I  T  R  M  L  L  I  A  I  Q  G  Q  *  I  R  M  L  *  V  M  L  S  S  Q  F  S  I  Q  T  E  L  M  S  I  F  S  W  G  I  I  D  V  H  S  R  M  R  K  M  Q  S  N  *  I  Q  V  V  L  R :   L  F  I  E  Q  Q  K  H  H  F  F  *  I  F  W  L  K  Q  K  G  S  A  R  K  V  F  S  S  R  H  Q  V  K  N  *  R  S  L  L  G  T  S  I  Y  R  N  Q  K  W  I  V  V  M  L  K  S  L  K  Q  Y  L  L  L  R :   P  L  F  L  H  L  R  L  E  D  *  R  L  R  S  P  C  I  K  N  S  L  D  *  E  N  Q  H  *  T  K  I  I  F  F  I  G  Q  F  F  F  C  I  Q  R  S  C  P  V  T  S  *  R  S  S  V  R  P  T  C  F  Q  L  I  L  I  * :   C  F  Q  K  V  V  H  L  F  L  G  T  K  K  M  L  T  L  V  M  L  L  S  C  I  M  R :   L  V  L  V  S  V  Y  P  S  G  I  F  F  G  I  C  W  K  E  Q  L  L  L  M  W  K  T  L  V  M  R  R  A  L  L  L  R  V  Q  P  R  V  A  F  H  K  :  M  S  L  D  G  L  K  L  M  R  R  Q  H  F  I  M  F  *  R  N  R  G  V  *  F  L  G  F  L  :  C  F  G  L  S  R  G  T  Q  A  S  I  M  S  S  N  L  E  I  G  L  L  Q  N  F  Y  E  F  V  V  E  L  Q  V  H  F  E  F  L  L  S  C  K  Y  T  Q  C  T  K  H  S  V  P  C  L  I  I  *  L  G  F  I  R  Y  K  F  I  L  S  M  *  R  A  E  R  *  G  T  C  S  Y  F  V  D  *  Q  L  C  K  S  L  *  G  F  S  F  L  W  M  *  N  Y  G  K  E  G  N  Y  V  Y  L  L  T  K  *  S  I  F  L  S  F  V  K  G  N  Y  G  G  E  G  D  H  V  E  N  L  N  M  L  S  Y  D  L  F  R  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9841" stop="9713"/>
                    <exon start="6577" stop="6365"/>
                    <exon start="6257" stop="6066"/>
                    <exon start="5987" stop="5787"/>
                    <exon start="5621" stop="5541"/>
                    <exon start="4030" stop="3892"/>
                    <exon start="3215" stop="3129"/>
                    <exon start="3030" stop="2951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STGNKSLTMALWMEAGSEPKTEKELADLDAISALKESTAFELKELGNEHVKKGKKHYSDAIDCYTRAINQNALSDAEQSILYSNRAHVNLLLGNYRRALQDAEDAIKLNPSSVKALYRAAKASFFLNLLAEAKGLCEKGLQLSSSSEELKKLARHIDIQKSEMDRRDAEESKAVSSAKTIVSAFETRGLKIAKPMYQELTGLRKPTLDKNNILHWAVLLLYPEVMSSDFIEEFCETDMFSAHLDMMFSEGCPPLPWDKENAYTRDAVELYYEAGAGVCLSKRDILRYLLEGTAASHVEDFGDEESASAQSSTKGSISQDVPGWVKINEKTTLYNVLKEPRCVVPGLPVFWVVSRNSSFYNEFKSGNWSSPKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19179" PGL_stop="18849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19179" e_stop="18849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="19179" e_stop="18849" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19179" stop="18849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAACTCATATCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTACACACCTTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGGAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAATCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  A  N  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  T  L  Q  D  K  T  Y  T  P  F  Q  L  L  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  E  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  N  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  K  P  T  H  I  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  R  Y  K  T  R  P  T  H  L  F  N  Y  Y  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  R  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  I  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  L  I  S  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  V  T  R  Q  D  L  H  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  G  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  S  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19048" stop="18851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTNVTRQDLHTFSTITDSPTGVETRIGMSSNSQCKLRPVGNEEDTYENVDPGSNNTESMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18879" PGL_stop="19539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18879" e_stop="19539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="18879" e_stop="19539" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18879" stop="19539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTCCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTAATAGTTGAAAAGGTGTGTAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGATATGAGTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCTACTCCAGTTCGTATCATCTCCTTCCTTCGCGCTAAGAAAATGGTTAGAAAGGGTTGTTTAGCTTTCTTCGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGACGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGATCTTCCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  P  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  C  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  D  M  S  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  K  M  V  R  K  G  C  L  A  F  F  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  T  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  V  G  L  V  L  *  R  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  S  M  *  F  W  I  *  V  G  F  L  Q  T  L  Q  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  L  L  Q  F  V  S  S  P  S  F  A  L  R  K  W  L  E  R  V  V  *  L  S  S  H  T  S  G  M  I  L  P  K  Y  L  Q  L  R  R  F  Q  *  S  V  S  F  W  M  C  F  P  Q  I  F  L  V  C  H  R  I  G  I  S  T  F  V  L  I  W  S  W  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  S  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  N  S  *  K  G  V  *  V  L  S  C  N  V  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  R  C  N  S  G  Y  E  L  A  F  S  K  L  C  N  L  R  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Y  S  S  S  Y  H  L  L  P  S  R  *  E  N  G  *  K  G  L  F  S  F  L  R  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  D  G  F  N  S  P  *  V  S  G  C  V  S  R  R  S  S  W  Y  A  T  G  *  G  Y  R  L  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  V  K  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18879" stop="19538"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFPTGLNLHCELLDMPIRVSTPVGESVIVEKVCRSCLVTFVGSNTHVDLVILEMVDFDVILDMSWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKKMVRKGCLAFFAHLRDDTTQVPSIETVSIVREFLDVFPADLPGMPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21429" PGL_stop="20398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21429" e_stop="20398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="21429" e_stop="20398" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21429" stop="20888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20984" stop="20398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAAGTTAGAAGTAAACTGTGTACCTCTATCTGATATGATGGAGAGTGGGACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAGTCGGTCAACGATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTTCTTTAGGTCATGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  K  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  S  R  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  F  F  R  S  *  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  W  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  H  S  S  S  I  F  A  S  L  V  S  P  R  N  A  L  S  R  I  R  I  S  F  S  S  L  N  C  F  P  L  I  L  S  R  K  K  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  K  L  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  N  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  R  F  K  S  F  *  V  K  T  Y  C  R  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  S  *  K  *  T  V  Y  L  Y  L  I  *  W  R  V  G  L  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  L  V  G  Q  R  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  S  Q  Q  C  H  A  S  F  Y  S  T  K  N  V  S  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  G  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  I  P  H  R  F  L  L  L  *  S  L  L  A  T  P  Y  L  G  S  G  S  V  S  H  H  *  I  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  K  P  K  I  L  P  S  H  L  L  L  A  S  *  S  Y  *  P  E  S  E  L  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  R  H  L  P  Q  H  *  L  F  L  D  D  T  I  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  A  L  D  S  N  L  S  E  *  R  H  I  V  G  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  P  P  L  T  P  N  H  G  S  D  N  Y  V  R  A  P  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  V  R  S  K  L  C  T  S  I  *  Y  D  G  E  W  D  S  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  M  S  R  L  S  *  S  V  N  D  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  V  N  N  V  T  L  H  S  T  P  P  K  M  F  L  *  V  M  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  D  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  R  L  I  S  D  P  D  Q  F  L  I  I  K  L  L  S  L  N  L  V  K  K  E  R  S  C  L  H  T  S  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  F  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  P  C  L  S  T  *  G  I  C  H  N  I  S  F  S  W  M  I  Q  Y  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  P  *  I  Q  I  F  L  S  K  D  I  L  *  A  T  M  I  H  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  R  R  *  L  Q  I  M  G  R  I  I  T  F  V  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21266" stop="21003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGQRLPKWSHTYPLSLEDQPRSPLQFSPTSIQEWAFSEVSLQASGVHTLLADNSGIEQQSQQCHASFYSTKNVSLGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20985" stop="20725"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASVRIVWIKSSTRGTHTLPLILKTHSSSIFASLVSPRNALSRIRISFSSLNCFPLILSRKKDLASTQAKNPPFSFTSSLIKLLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20992" stop="20753"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVDQIIDAGYTYPSLNSQNTFLIDFCFFSLSSQRLISDPDQFLIIKLLSLNLVKKERSCLHTSQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21262" stop="21038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNDYPNGVILTHCLWKTNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRALSNKVNNVTLHSTPPKMFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27470" PGL_stop="26819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27470" e_stop="26819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="27470" e_stop="26819" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27470" stop="26819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAATTAGGGTTAACAGGTTCAGTTTTCTTCTGGTGTAAACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGCTTTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTAGTTTTGTAACAGTTGAGGAATTAACCTTGTATTTGCTGGGCAACAACACTGATGGTTAGGTGATTCTTGCCTGCTGTCGAAGTCTTGCT</gDNA_template>
            <first_frame> P  E  A  S  P  I  D  S  G  Y  F  V  D  F  *  M  L  V  V  S  L  T  K  H  G  L  L  V  S  S  K  F  F  L  L  K  T  K  L  G  M  L  L  P  F  K  G  *  Q  G  T  *  G  *  R  I  R  V  N  R  F  S  F  L  L  V  *  T  A  F  V  S  E  T  Q  T  N  P  F  T  C  K  W  Y  *  S  L  M  L  C  Y  L  N  D  S  F  F  F  S  K  T  D  S  S  *  E  M  *  Y  T  I  V  N  F  Y  E  Y  L  W  P  G  T  Y  W  F  C  G  F  Y  Q  F  C  N  S  *  K  I  H  L  Y  L  V  L  I  S  Y  V  K  L  T  *  *  Q  L  F  S  L  E  N  G  L  V  K  I  *  F  T  I  F  F  *  K  W  I  S  V  L  C  L  D  L  N  G  F  I  D  D  *  F  C  N  S  *  G  I  N  L  V  F  A  G  Q  Q  H  *  W  L  G  D  S  C  L  L  S  K  S  C  </first_frame>
            <second_frame>  L  K  L  L  P  *  I  L  D  I  L  L  T  S  E  C  W  W  C  P  *  R  N  M  A  F  W  F  L  Q  S  F  F  F  *  K  Q  N  *  E  C  F  S  H  L  K  G  S  K  V  H  R  V  K  E  L  G  L  T  G  S  V  F  F  W  C  K  L  L  L  F  L  K  H  K  Q  I  H  S  P  V  N  G  T  N  L  L  C  Y  A  I  *  M  T  A  F  F  S  Q  K  L  I  L  V  K  R  C  D  I  Q  L  S  I  F  M  N  I  C  G  L  E  L  I  G  F  V  G  F  T  S  F  A  T  V  K  K  F  I  C  T  W  C  *  F  L  M  *  S  *  L  N  S  S  C  F  H  L  K  M  D  *  S  R  Y  D  L  Q  F  F  F  K  N  G  Y  L  C  F  A  W  T  S  M  V  L  L  M  T  S  F  V  T  V  E  E  L  T  L  Y  L  L  G  N  N  T  D  G  *  V  I  L  A  C  C  R  S  L  A </second_frame>
            <third_frame>   *  S  F  S  H  R  F  W  I  F  C  *  L  L  N  V  G  G  V  L  D  E  T  W  P  S  G  F  F  K  V  F  S  F  K  N  K  I  R  N  A  S  P  I  *  R  V  A  R  Y  I  G  L  K  N  *  G  *  Q  V  Q  F  S  S  G  V  N  C  F  C  F  *  N  T  N  K  S  I  H  L  *  M  V  L  I  S  Y  V  M  L  S  K  *  Q  L  F  F  L  K  N  *  F  *  L  R  D  V  I  Y  N  C  Q  F  L  *  I  S  V  A  W  N  L  L  V  L  W  V  L  P  V  L  Q  Q  L  K  N  S  S  V  L  G  A  N  F  L  C  K  A  N  L  I  A  A  V  F  T  *  K  W  T  S  Q  D  M  I  Y  N  F  F  L  K  M  D  I  C  A  L  P  G  P  Q  W  F  Y  *  *  L  V  L  *  Q  L  R  N  *  P  C  I  C  W  A  T  T  L  M  V  R  *  F  L  P  A  V  E  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62946" PGL_stop="62483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62946" e_stop="62483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="62946" e_stop="62483" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62946" stop="62483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTTAATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</gDNA_template>
            <first_frame> Y  N  L  Y  H  L  V  I  W  C  I  S  E  E  E  S  S  S  N  F  K  F  R  H  Q  Y  F  N  F  H  Y  N  R  L  F  L  Y  K  R  L  V  T  S  F  H  S  L  I  L  Y  L  F  F  *  F  I  I  *  L  V  S  C  S  C  *  V  S  Y  F  I  I  Y  N  F  I  S  W  S  L  L  K  K  V  E  V  K  K  V  *  *  N  Q  *  K  N  *  L  K  K  L  T  K  V  L  V  R  L  N  L  K  F  L  L  L  E  *  I  Q  M  N  L  R  M  *  M  K  L  V  F  P  V  P  V  L  *  I  L  I  Q  I  V  R  L  P  M  N  S  M  K  D  I  M  V  L   </first_frame>
            <second_frame>  I  T  Y  I  I  W  S  F  G  V  F  R  R  R  N  L  L  Q  I  S  S  F  D  I  N  I  L  I  F  I  I  I  V  C  S  Y  T  N  V  W  *  L  R  S  T  L  *  S  Y  I  Y  F  F  N  L  L  F  N  L  *  V  V  L  V  K  F  R  I  L  *  F  I  I  L  Y  H  G  V  F  *  K  K  W  K  *  K  R  S  S  R  I  S  K  K  I  S  *  K  N  *  Q  R  C  *  F  V  *  I  *  N  S  S  C  *  N  K  Y  R  *  I  Y  A  C  E  *  N  *  F  F  P  S  R  S  Y  K  Y  *  F  R  *  S  D  S  P  *  T  L  *  K  I  L  W  Y  *  </second_frame>
            <third_frame>   *  L  I  S  F  G  H  L  V  Y  F  G  G  G  I  F  F  K  F  Q  V  S  T  S  I  F  *  F  S  L  *  S  F  V  L  I  Q  T  F  G  N  F  V  P  L  S  N  L  I  F  I  F  L  I  Y  Y  L  T  C  K  L  F  L  L  S  F  V  F  Y  N  L  *  F  Y  I  M  E  S  S  K  K  S  G  S  K  K  G  L  V  E  S  V  K  K  L  V  K  K  T  N  K  G  A  S  S  S  K  S  K  I  P  L  V  R  I  N  T  D  E  F  T  H  V  N  E  T  S  F  S  R  P  G  P  I  N  I  N  S  D  S  P  T  P  H  E  L  Y  E  R  Y  Y  G  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62728" stop="62483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYIMESSKKSGSKKGLVESVKKLVKKTNKGASSSKSKIPLVRINTDEFTHVNETSFSRPGPININSDSPTPHELYERYYGIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="77166" PGL_stop="77451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77166" e_stop="77451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="77166" e_stop="77451" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77166" stop="77451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGGTTCGTTGTTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTATTTCTTTTGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  F  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  Y  F  F  C  S  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  L  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  C  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  I  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  W  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  V  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  L  F  L  L  F  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77215" stop="77451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFISFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHWQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="77525" PGL_stop="78078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77525" e_stop="78078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="77525" e_stop="78078" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77525" stop="78078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAACAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGTCACCTCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  N  R  G  *  G  W  G  E  *  T  S  A  E  *  G  I  V  T  S  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  N  T  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  K  R  Q  N  V  V  A  I  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  T  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  S  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  P  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  D  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  Q  R  V  R  M  G  R  M  N  K  C  R  M  R  N  C  H  L  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  T  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  E  T  P  K  C  G  G  D  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77526" stop="78077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVTEGEDGENEQVQNEELSPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPTPPVPEVQHAATVAPRMDASLEIDTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="79580" PGL_stop="78822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79580" e_stop="78822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="79580" e_stop="78822" e_length="759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79580" stop="78822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTGAAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATATGAACCAGATTGGAAGTGTAGTCGCCCTCCCACAATAACGGATCTGTCCCAGACTAGGCTAACGCCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTATATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAATATACATATGAAAATGTGGAGCCGGGATCAAATAATACAGCAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATC</gDNA_template>
            <first_frame> R  K  I  P  S  F  F  F  T  N  K  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  F  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  E  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  T  I  L  L  A  R  R  K  E  M  I  *  T  R  L  E  V  *  S  P  S  H  N  N  G  S  V  P  D  *  A  N  A  T  V  L  A  L  Q  S  K  I  A  K  F  R  E  S  Q  V  I  P  R  I  I  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  I  Y  I  *  K  C  G  A  G  I  K  *  Y  S  S  H  T  I  T  N  Q  K  I  T  C  D  N  S  I </first_frame>
            <second_frame>  E  K  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  F  S  T  T  L  E  V  G  P  L  T  P  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  T  R  G  L  S  K  P  T  Q  L  K  V  L  G  *  Y  H  P  *  G  V  P  R  K  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  P  D  W  K  C  S  R  P  P  T  I  T  D  L  S  Q  T  R  L  T  P  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  Y  Q  N  Q  P  F  L  R  *  P  N  L  H  K  Y  C  S  P  T  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  Y  T  Y  E  N  V  E  P  G  S  N  N  T  A  A  I  Q  S  Q  T  K  R  L  P  V  I  T  A   </second_frame>
            <third_frame>   K  N  P  I  L  L  L  H  K  Q  N  Q  S  T  P  R  G  C  T  W  S  N  E  A  F  S  Q  Q  L  L  K  L  G  L  *  L  P  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  A  D  Y  R  N  R  L  N  *  R  Y  L  G  S  I  I  P  E  V  C  Q  E  S  *  T  T  L  T  N  H  S  L  S  T  K  K  G  D  D  M  N  Q  I  G  S  V  V  A  L  P  Q  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  I  A  P  P  Q  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  N  I  H  M  K  M  W  S  R  D  Q  I  I  Q  Q  P  Y  N  H  K  P  K  D  Y  L  *  *  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79060" stop="78824"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLHKYCSPTKVTKQDLYTFSTITDSPTGVDTRIGMSSNSQCKLRPVANEEYTYENVEPGSNNTAAIQSQTKRLPVITA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79442" stop="79215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSAGNTSENSRTIETDSIEGTWVVSSLRCAKKAKQPLLTILLARRKEMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="81643" PGL_stop="81467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81643" e_stop="81467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="81643" e_stop="81467" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81643" stop="81467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAATTCCTCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAACATATCCTCCAACACTTGGATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  S  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  W  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  M  H  E  T  Y  P  P  T  L  G  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  F  L  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  D  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85157" PGL_stop="87092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85157" e_stop="85285"/>
            <exon e_start="85371" e_stop="85491"/>
            <exon e_start="86232" e_stop="86304"/>
            <exon e_start="86555" e_stop="86785"/>
            <exon e_start="86991" e_stop="87092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.891"/>
          <exon-intron don_prob="0.979" acc_prob="0.966" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="85157" e_stop="85285" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85286" i_stop="85370" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="85371" e_stop="85491" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.966">
            <gDNA_intron_boundary i_start="85492" i_stop="86231" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86232" e_stop="86304" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86305" i_stop="86554" i_length="250"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="86555" e_stop="86785" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86786" i_stop="86990" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="86991" e_stop="87092" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85157" stop="85285"/>
              <exon start="85371" stop="85491"/>
              <exon start="86232" stop="86304"/>
              <exon start="86555" stop="86785"/>
              <exon start="86991" stop="87092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT : GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG : CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG : ACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAG : GTTGTGTACTAAATTTTGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATTGAAGATCACTTAAATAT</gDNA_template>
            <first_frame> R  G  V  G  K  C  N  V  G  H  W  R  L  P  L  V  L  C  S  A  V  C  L  S  K  T  G  I  S  F  S  V  T  T  K  L  S  L  R  V  Q  *  N  :  G  R  G  I  E  A  D  G  C  R  A  T  A  R  V  W  S  Q  D  G  R  F  H  C  *  L  L  Q  K  H  *  E  F  P  R  S  Q  S  S  P   : A  W  L  S  P  *  A  F  A  *  N  R  T  C  S  F  *  D  I  A  R  R  S  *  R :   R  *  N  K  N  I  T  R  G  D  P  L  A  E  P  R  L  L  C  I  F  S  F  K  *  *  C  G  W  I  S  G  G  N  A  Q  C  R  D  *  H  G  G  L  *  L  D  N  F  S  S  S  D  R  T  *  N  D  R  S  G  L  A  C  *  S  T  *  V  A  *  *  I  P  F  N  R :   L  C  T  K  F  C  A  S  *  A  K  S  R  E  R  E  D  R  T  I  C  L  *  A  D  *  K  I  E  D  H  L  N   </first_frame>
            <second_frame>  E  E  L  V  N  V  T  W  D  I  G  V  F  H  L  S  F  A  L  P  S  A  Y  Q  K  L  V  F  H  S  P  S  P  Q  S  F  H  S  E  F  S  E  M :   E  G  G  L  K  P  M  D  A  E  Q  L  R  E  Y  G  H  K  M  V  D  F  I  A  D  Y  Y  K  N  I  E  N  F  P  V  L  S  Q  V  Q  :  P  G  Y  L  R  K  L  L  P  E  T  A  P  A  H  S  E  T  L  Q  D  V  L  E   : D  V  E  T  K  I  L  P  G  V  T  H  W  Q  S  P  D  Y  F  A  Y  F  P  S  N  S  S  V  A  G  F  L  G  E  M  L  S  A  G  I  N  M  V  G  F  S  W  I  T  S  P  A  A  T  E  L  E  M  I  V  L  D  W  L  A  K  V  L  K  L  P  D  E  F  L  S  T   : G  C  V  L  N  F  V  Q  V  K  Q  K  V  G  R  E  K  I  E  P  Y  V  Y  K  L  I  E  R  L  K  I  T  *  I  </second_frame>
            <third_frame>   R  S  W  *  M  *  R  G  T  L  A  S  S  T  C  P  L  L  C  R  L  P  I  K  N  W  Y  F  I  L  R  H  H  K  A  F  T  Q  S  S  V  K   : W  K  G  D  *  S  R  W  M  Q  S  N  C  E  S  M  V  T  R  W  *  I  S  L  L  I  T  T  K  T  L  R  I  S  P  F  S  V  K  S  S :   L  V  I  S  V  S  F  C  L  K  P  H  L  L  I  L  R  H  C  K  T  F  L  K  :  T  L  K  Q  K  Y  Y  Q  G  *  P  T  G  R  A  Q  I  T  L  H  I  F  L  Q  I  V  V  W  L  D  F  W  G  K  C  S  V  P  G  L  T  W  W  A  L  V  G  *  L  L  Q  Q  R  Q  N  L  K  *  S  F  W  I  G  L  L  K  Y  L  S  C  L  M  N  S  F  Q  Q  :  V  V  Y  *  I  L  C  K  L  S  K  K  S  G  E  R  R  *  N  H  M  F  I  S  *  L  K  D  *  R  S  L  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85158" stop="85285"/>
                    <exon start="85371" stop="85491"/>
                    <exon start="86232" stop="86304"/>
                    <exon start="86555" stop="86785"/>
                    <exon start="86991" stop="87088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELVNVTWDIGVFHLSFALPSAYQKLVFHSPSPQSFHSEFSEMEGGLKPMDAEQLREYGHKMVDFIADYYKNIENFPVLSQVQPGYLRKLLPETAPAHSETLQDVLEDVETKILPGVTHWQSPDYFAYFPSNSSVAGFLGEMLSAGINMVGFSWITSPAATELEMIVLDWLAKVLKLPDEFLSTGCVLNFVQVKQKVGREKIEPYVYKLIERLKIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="91394" PGL_stop="91570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91394" e_stop="91570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="91394" e_stop="91570" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91394" stop="91570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92168" PGL_stop="93514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92168" e_stop="93514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="92168" e_stop="93514" e_length="1347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92168" stop="92880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92688" stop="93346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92757" stop="93514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93160" stop="93490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAGAAGATTACCTGTGATGACAACATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  F  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  I  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  W  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  N  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  N  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  K  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  F  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  R  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  S  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  *  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  F  R  P  L  A  N  K  E  D  T  *  E  N  V  D  P  G  S  N  N  T  K  A  M  R  S  Q  T  R  R  L  P  V  M  T  T   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  E  T  H  T  *  R  T  W  H  K  V  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  L  V  Q  D  K  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  S  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  K  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  S  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  L  D  H  *  Q  I  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  D  H  K  P  E  D  Y  L  *  *  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92333" stop="92671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKFFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92934" stop="93140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKSISLSGGIPGRSAGNTSRNSRTIETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="94144" PGL_stop="92740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94144" e_stop="93972"/>
            <exon e_start="93267" e_stop="92740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="94144" e_stop="93972" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93971" i_stop="93268" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="93267" e_stop="92740" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94144" stop="93972"/>
              <exon start="93267" stop="92740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGATCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAATCCACAAGATCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATTTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTTATCTTGAACCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  D  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  S  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  D  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  F  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  D  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  L  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  I  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  N  P  Q  D  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  I  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  M  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  Y  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  I  H  K  I  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  F  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  F  I  L  N  Q  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94143" stop="93972"/>
                    <exon start="93267" stop="92741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSINAYEAKFRALSRYATQLCFNPQDRIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWISPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSMVREFLDVFPADLPGMPPDRDIDFCIYLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="94772" PGL_stop="94219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94772" e_stop="94219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="94772" e_stop="94219" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94772" stop="94219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTATGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCATCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATCGGACATAGGCACGTTTCCACGTCTGCCTACTGGGGCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAACGTGGTGGCGGTCACATGCTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  Y  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  I  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  A  Y  W  G  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  M  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  S  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  S  D  I  G  T  F  P  R  L  P  T  G  A  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  T  W  W  R  S  H  A  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  W  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  R  T  *  A  R  F  H  V  C  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  R  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94771" stop="94220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDAMAVTPPPTEEVVREGEEGENEQVQNEELPSQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASSDIGTFPRLPTGAIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKTWWRSHAECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="94407" PGL_stop="94839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94407" e_stop="94839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="94407" e_stop="94839" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94407" stop="94839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGCCCCAGTAGGCAGACGTGGAAACGTGCCTATGTCCGATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGATGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCATAGCATCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGTTTTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  A  P  V  G  R  R  G  N  V  P  M  S  D  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  D  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  I  A  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  V  F  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  P  Q  *  A  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  M  A  I  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  F  F </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  S  P  S  R  Q  T  W  K  R  A  Y  V  R  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  F  L  S  R  W  R  S  H  R  H  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94562" stop="94837"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPFLTLSYYFLSRWRSHRHSIRWARCLSSSSRGRPPTTSTTASCRCF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94641" stop="94838"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWDGNSSFCTCSFSPSSPSLTTSSVGGGVTAIASDGLGACPLPLEDVLPRPLPRPLAVVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="96488" PGL_stop="94846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96488" e_stop="94846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="96488" e_stop="94846" e_length="1643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96488" stop="94886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95131" stop="94846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  C  K  K  E  G  L  M  N  *  *  K  E  I  *  G  I  G  C  H  E  P  A  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  C  H  K  S  T  R  R  F  G  G  S  G  V  T  N  *  H  V  D  L  G  D  R  V  L  R  T  D  T  *  I  *  R  I  E  C  H  E  P  T  H  R  F  R  G  S  E  C  H  V  L  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  G  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  F  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  L  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  *  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  S  N  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  K  G  K  C  G  C  Q  S  R  L  R  F  G  S  *  Q  T  W  Y  Q  S  I  M  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  V  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  K  A  G  Y  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  A  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  C  V  R  K  K  A  *  *  I  D  R  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  Y  E  P  T  H  R  F  R  G  S  S  V  T  N  R  H  I  D  L  G  D  R  S  V  M  F  *  H  T  V  V  G  D  R  S  V  T  Y  R  H  K  R  V  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  F  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  L  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  Y  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  E  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  E  I  I  V  I  E  L  V  F  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  S  D  L  G  R  D  K  L  G  I  R  A  L  C  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  D  I  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  Q  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  V  *  E  R  R  L  D  E  L  I  E  G  D  L  G  D  R  V  S  R  T  G  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  E  D  R  V  S  Q  I  D  T  *  I  W  G  I  G  C  H  E  L  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  E  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  C  S  D  T  Q  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  I  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  N  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  K  *  *  *  L  N  W  F  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  E  G  *  V  W  V  P  V  A  A  P  I  W  V  V  T  N  L  V  S  E  H  Y  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  C  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  Q  G  R  I  *  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95659" stop="95378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYLCFVLTPTFMFSSCLFVECSKRAVIFYSTVTLASLHYSGYQGELMLLAWTESSSSCLDALKFRHGLAFMYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95082" stop="94870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFCLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQQGRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="102279" PGL_stop="102455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102279" e_stop="102455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="102279" e_stop="102455" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102279" stop="102455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 52472 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 2098 bytes was the average size of a spliced alignment
$ 27144 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1428 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 120 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 01:45:59
-->
