<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-19 20:33:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341873" ref_strand="-" ref_description="SGN-U341873        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 | chr3:3000764-3003170 REVERSE | Aliases: F11F8.37(evalue: 1e-15, score=80.1) genbank/nr: gi|15232759|ref|NP_187589.1| protein kinase family [Arabidopsis thaliana] gi|6681340|gb|AAF23257.1| putative protein kinase [Arabidopsis thaliana] gi|6682254|gb|AAF23306.1| putative protein kinase; tRNA-Ser; tRNA-Arg [Arabidopsis thaliana](evalue: 1e-13, score=80.1)">
      <seq>cttaaacttgctgaaattgcagagcaggcgttgcgggaaaatcctgctgagcgccctgatatgtcacagttggcacttctgttagagcagctagtgaaggatgtaatgatatcatagcctttgtgtcggagttttatattaagtttttggtggatcgaaatttttcagaaaacaaaatcagaggatagcatattggtgagtaacgacgctcttctgcaattgtacatttctatgagctccttgtaaattttgtgcttatattttttatttgccacattcttggacaaatgtcaacaataaattttcaactttttcttatagcaatgaaacctgtgatgctgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="13205" stop="14152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13505" g_stop="13851" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="360"/>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U341873" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341873" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13505" e_stop="13851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGACTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCACCAA</genome_strand>
        <mrna_strand>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGCCTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333186" ref_strand="+" ref_description="SGN-U333186        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G16670.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) | chr1:5697332-5699762 FORWARD | Aliases: F19K19.4, F19K19_4 (evalue: 2e-25, score=112) genbank/nr: gi|9989053|gb|AAG10816.1| Unknown protein [Arabidopsis thaliana] (evalue: 1e-23, score=112)">
      <seq>atacgccatcagtggacactttacacgcaagtcagatgtttatagctttggagtcgtgttactagaaatagtcagcggttcaccagtagttgcattcgacattactcgaggagagcatttccttgttaacaaggcatgggaaatgtacaatgctgaccaactgttagagctagtagaccctgttttggatagagaacttctgaatgacgatgaagctctccgattcttgaaggttggcctcctctgtgtgcaagagaacgccagcctccgccccaaaatgtccatggtcatcaagatgttgagtcgtgatggcgcgataatagttgatgaaatgaagattactcagcctgggattgttgctgatctaatggatgttaagataggcagaaaacactcttctcaaagctttttttctaaagcttctacaagcatgagcccaggaagccccttccaaatagttaatagaagaaaaagtaatagctagaaaatagtcgaggtacgcacaagctggttcagacatcacgattataaaaaaaaaatagaatatacttgtacaaagagtatattgtgcacacacatagatacacttgcactaagtttgatcacttttttttttaattgttagatcagttgtatatcaatgtgagcagctaggtctttaattttttcaaatttttttttggaatatttggttccatttgatgtaaaagctacctttaataacattttttttagtttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="22547" stop="20945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22247" g_stop="22115" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22114" i_stop="21858" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21857" g_stop="21239" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="752" r_length="619" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U333186" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22247" e_stop="22115"/>
          <exon e_start="21857" e_stop="21239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCCATCAGTGGACACTTAACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAGGTACATTTTTATTACTTTTGACTTATGTGTAGTCTACGATTAGTTTCAAACAACACTACATATATAGATGCTTATATGAAACTTATCGCTATTCGATGAAAATATGTACTATTATTATTACTATTATCAATGATTGACTTGTAACAGTCTAAAAACCAAACAAGTGGGAACCATGATTTTGACTCTTAATATAATGATAGTATTAGTTTGTTGGCTTGATATGACATGAAAGTTGTCAACTTGTGTTGTGTTTTTAGGCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAATAATTGAGT</genome_strand>
        <mrna_strand>ATACGCCATCAGTGGACACTTTACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAG.................................................................................................................................................................................................................................................................GCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326876" ref_strand="+" ref_description="SGN-U326876        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G16670.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) | chr1:5697332-5699762 FORWARD | Aliases: F19K19.4, F19K19_4 (evalue: 3e-50, score=194) genbank/nr: gi|52076900|dbj|BAD45912.1| receptor protein kinase PERK-like [Oryza sativa (japonica cultivar-group)] >gi|52076614|dbj|BAD45515.1| receptor protein kinase PERK-like [Oryza sativa (japonica cultivar-group)] (evalue: 3e-52, score=207)">
      <seq>cctaattcttcttgcttttttcacattctttctccactaatatttttaaaaaattatttcttcataaaaactaaatttcaagaatcatgaagttttcttttccatttatctcatgttttagctcatcagcagataattttgaaggcagccaaatcccatatggtggacaaatttcccagaattttacagtgtactcttacagtgaattgaaagctgcaactcatggattcagagcttcaaataaaattggagaaggaggttttggttctgtttacaagggtcggctgcaagatggaacctttatggctgtaaaagttctttcagttgaattggaatcaatgagaggggaaagggaatttgtatcagaaatagctgcattgtctgatatcaaacatgaaaaccttgtcaacctcagaggatgttgtgttgatggagcacatagacttttagtctatgattacatggaaaacaacagtctttccctaacacttttaggtggggagcaaaacagaagtaaatttacatggacgcttaggataggagtttcgataggaatagcanagggactttcatatctccatgaagaagtgagtccacatgtcgtgcatagagatattaaaaccagcaacatactccttgatgagaatttcacaccaaaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="24114" stop="22150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23814" g_stop="23653" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23555" g_stop="23440" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="278" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23310" g_stop="23094" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="495" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23093" i_stop="22619" i_length="475">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22618" g_stop="22450" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="664" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U326876" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23814" e_stop="23653"/>
          <exon e_start="23555" e_stop="23440"/>
          <exon e_start="23310" e_stop="23094"/>
          <exon e_start="22618" e_stop="22450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATGGTAAATTTCTCAAAACCCCTTTTTTGTTTTTTGCTTAAAAATCTCATCTTTTTTTTTTTTATATATATTTCTTAAGAATATCAAATTCTAAAAACAGGTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAGGTGAAAAAAAAGTTCTGTTTTTTTTTTTTTCAGTTGGGTTTGAAGAAAATGGAAAAAAGGGATGTGGGGTTTTGTTCTTTTTTATGAATTGACTATTTTTATGTTTTATTTGGGGGTTTTGTTGTAAAGGGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAGGTAATTTCCTTGTTTTCATTGTCCTTGTTTTGGTTGATCCCCAACTTGTTTGAGATTGAGGCCTAGTTGTTGTTGTTTGTAGTTGTTTTAGCCTACCCCCGACTTGTTTGGAACTGAGGTTTAGTTATTGTTGTTTGCACTTGTTTTAGCCGATCCCGGCTTGTTTGAGATTGAGGTGTTGTTATTTGCCCTTGTTTTAGCCGGCCCCGATTTGTTTGTGATTGAGGCATGGATGTTGTTGTTTGCACTTATTAAAGCTGACCCCGTACTTATTTGGGACTGAGGCATAGTTGTTGTTGTTTGCACTCGTTTTAGACGACCCTCCACTTGTTTGGGACTCGGGCGTAGTTGTTGTTGTTTGAACTTGTTTTAGCCGACCCTGACTTGTTTAGTACTCAGGCGTAATTATAGTTATTTGCATTTGTTTCACTTTTGTATGTTCGTTGAGGTCGTGTCTGTTTGTTTTGACTAGCAGGTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGAAAGGAGTTTCGATAGGAATAGCAAAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</genome_strand>
        <mrna_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG.................................................................................................GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG.................................................................................................................................GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGATAGGAGTTTCGATAGGAATAGCANAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332614" ref_strand="+" ref_description="SGN-U332614        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cgcttcaatacattagcagatattgccacaaattctcttgtttgcatgatgatttctgcaaaaactccccagaatcagaaactacgataacgaagtaggagaaagatcacggagaccaaggaagaggttaccatttgagggatcacgagggagatgaagtagcgttccgtgttgcaaacattgttgccactttcaaggactcctacattgttgccttttgttctttgccaactactgattctgatttactgaattgtcatcaaacccaacagttccaacttccttcatccaagcctaacctgttttgttggttgactaccactttgcaaaatagatctcgccaatcagctgtattccgtcgactatggtcatatgcttcctgcaaaagctgacgaaagctggcgtgatttacatggaaaggtgtgccgatgatgttgtgaaataaagatgtcccatcactagcttgcgaaagacgaaggccgtcaaatatgactttctgaatgtgctgatcaccagtgccattattaagagtatatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="41156" stop="43269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41456" g_stop="41549" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41550" i_stop="42145" i_length="596">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42146" g_stop="42275" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="220" r_length="126" r_score="0.846"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42276" i_stop="42529" i_length="254">
            <donor d_prob="0.895" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42530" g_stop="42564" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="255" r_length="35" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42565" i_stop="42684" i_length="120">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42685" g_stop="42970" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="541" r_length="286" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U332614" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41456" e_stop="41549"/>
          <exon e_start="42146" e_stop="42275"/>
          <exon e_start="42530" e_stop="42564"/>
          <exon e_start="42685" e_stop="42970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAGCTCCCCAGAATCAGAAACTACGATAACGAAGTAAGTTTTTATAGTTCATATTTGTGATTGTAAATCGAATTTATGTTGTTTATTTTCTGTGAATTGAATGCGAAGGAGTTGTTAGGGTTTGCCGATTGTAAATTCGTGTTTCGATTATAGAATTAGCGAGAGCAATAACTAGTGGAATCACCTGGTAAAAAAAAGTCTAATTTGTTCGCAGCATAGAAAAAGTCGAAATAAAATCTCAAAGCTCCTCATTTTTGTTTTTTTTTTGGAGATGCGAACTGATAATTGAAATTACAGCATTTTGGATCAAGTCTCGTTTTTTCATACTCTGTAATAGTGACAATTTTTTTTTTTTGCTCTATGATGTATATGAAAGGACCATTTTTTTTTGCTTCCGATAACCATGGTGTCTGAGCTAGTTTGTGTACACCTCGACTAATTATTTGAGCCCTTTGCATTTTGGACCATTATATTGAGTAGAAAACAGTAAGAGGCTTAACTTCTACCGTTAGAGATTTTTGACCATTTGAGTAGTAGGATACAGTAAGATACTTTCCTTTTTACTGCTTTTCGTTTCGTGAAGTATATTGTTAAAGGCTCATCTTATCTATTATTTGGTTCATACTCAGGTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGAATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCCTTTTGTTCTTTGCCAACTACTGATTCTGATTTACTGGTAAAGTTTTTATATCATATGTTTTAGTTACCCTTGTGATATGTTAGTTTTATACTATTACTCCATATTAAGGGCAAGATATAATTCTGAAAGTAGTCTACATATGACATATTATCTACATAAAGAAACCAAAATCACATTTTAATTAATTGAAGCTTATACGTATTTATTCACATACAACAATAATAACAGACCCACTGTAAAATCACATTCTAATAGAGAGATTGTTTCCAATAGACCCTCAGTTGTCTATAATATTTACCAATTACCATTGCCGTTTGTCTAACTTTAACCAAGGTAATCTACAAGAACCACGGTTTTGGATATTTGGCCTTATGGGAAGAAGTTCAAATTTAAAAGATTTTGAACTTTGACCTTGAAGGTTTTCAGCAAGACTATTCATTTTCAAGGCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCTGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTGCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGACTATATGACAG</genome_strand>
        <mrna_strand>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAACTCCCCAGAATCAGAAACTACGATAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGGATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCC-ACT-TTCAAGGACTCCTAC--ATTGTTGCCTTTTG..............................................................................................................................................................................................................................................................TTCTTTGCCAACTACTGATTCTGATTTACTGAATT........................................................................................................................GTCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCCGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTCCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGAGTATATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338055" ref_strand="+" ref_description="SGN-U338055        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr1:27412963-27417284 REVERSE | Aliases: F3N23.4, F3N23_4(evalue: 1e-37, score=154) genbank/nr: TIR-NBS(evalue: 1e-41, score=174)">
      <seq>actattgaaaaaagtaaggttcaatttgatgacagataggaaaatgattgatagttttgtcagttaggcttcaaatatttctcattatcaagtagcagaaaaaattgaatatattttctcatcatatacctaaagctgagagttagtctttagcaatataatataacaatgtctcatgcttcttcttcgaaaatttgcaagtacgatgtgtttttgagttttagaggagaagatacacgtacaacatttgtgagtcatctatataaagccctggaacaaagtggaatccgcatttttaaagatgatgagcgattagaaagggggaaaccaatttttgatgaacttttaaaagccatagaagagtctaaaattgctatagtgatattttcgaaaagctatgcatcgtcgagatggtgcttacaggagcttgcacacatcataaagtgtagaaacgaattggagctaatagtgattccagttttctatgatgtaactccatcagatgtgcgccatcaaaatcccccttttgctgattcatttttacaatacatgaaagatgatatggagaaggttcatagatggagggctgcatttgtggaggctgggaaaatatcaggctatcatttacttaattttcagcatgaagcaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="48147" stop="46905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47847" g_stop="47210" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U338055" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47847" e_stop="47210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGAAAAAAGTAGGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCAGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTTTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTAGAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTAGAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCAGAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTCAA</genome_strand>
        <mrna_strand>ACTATTGAAAAAAGTAAGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCTGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTCTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTACAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTACAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCATAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316980" ref_strand="+" ref_description="SGN-U316980        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:2996283-2998195 REVERSE | Aliases: F11F8.36(evalue: 4e-100, score=362) genbank/nr: gi|37532246|ref|NP_920425.1| putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] gi|19225030|gb|AAL86506.1| putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] gi|20279471|gb|AAM18751.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|31430853|gb|AAP52712.1| putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-102, score=375)">
      <seq>cccaccccaccccaccaccctactctccaaccccattatcttcatcatcatcatcaagattcctctttccactttctccataatcatctcttcaatttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatccccctagagtagaataatccaacagctgaaagtctcttagttatagtttgccattgggttgccagtcctacaaatggatcatcgagacatgctgttgagctaagcccccttttttacttttttttttccttttaaagagtgtttttgaattccatgcatttttttaaagaagttgttataactatacctagtaaatattctgtttgctttgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataggggggggggagaaaaacctttcgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="55664" stop="89858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55964" g_stop="56775" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56776" i_stop="59233" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59234" g_stop="59732" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1311" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59733" i_stop="60682" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60683" g_stop="61089" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1312" r_stop="1728" r_length="417" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61090" i_stop="61825" i_length="736">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="0.61"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61826" g_stop="61869" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1729" r_stop="1772" r_length="44" r_score="0.614"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61870" i_stop="66470" i_length="4601">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66471" g_stop="66515" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1773" r_stop="1817" r_length="45" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U316980" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1807</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55964" e_stop="56775"/>
          <exon e_start="59234" e_stop="59732"/>
          <exon e_start="60683" e_stop="61089"/>
          <exon e_start="61826" e_stop="61869"/>
          <exon e_start="66471" e_stop="66515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATA----G----T---TTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTGATAACACTTTTTTTGAGCTTAGGGTCTATTCGTAACTGTTTTTTTTTTTTTTTTACTTTCATAAGGTAGGAACAAGGTTGTGTACACCACTTGTCTCGAGCTCTACTGAGTTTTGGTCTAGTTGGAGGAGCGCAACAAGTGTGTTTTGGTGATTAGATGCACGTTTAGTCTCATGATACTGAATTTATTGAAACTTGGTATTTTCAATATGGAGCATAAATTTATATTAAAAGTCAACTACAATTACATCAAGTAATAAATGTGAATTCGTAACTTTAGATATATTTGCTTAAAGCTAAGAACATCAAACACAACATGAATTTATGATAAGTTTTTTTTCCGTTGTGATAAATTGTACTAGAGAAAAATGTGGCTTTTGGGATGCAGAACTCAATAAGACACTATACTGTTCATTCAACAACCTACCTCGCATATCATGTGTTGAGGTCCCTAGCCTATAACGAAAAGACAAGTTCAATGAACACTACAATATCTTGTTGAGTTTTATATCCCGAAAGTCCTATCTTTCTCTTGTAGAATTCATCGCAACATAAATTTGTGATAACTTTTTTTTATTGTTGTGATGAATTGTACAAGAGAAAGATCGGACTTTTAGAATGCAGAACTCAACAAGACACTATACTGTTCATTCCACTTGTCTTTTAGTCATAGAAAAGGAACCTCAACACATGATATGCGAGGTTGATCTACGTCACAAATTTGAATCATATTGTAGATAAAAGTTTAATATTAAAGTAGAGAAAAATATAAAAGGACAATGTGTTATCTTCTTCCTTCGGGTTAAGGTTTCGAATATGCAACAGAACAATAAATTTTTGAGAAATTTCTTCTCCTTTTTTTGGGGGGACTTTTAAAATCTAATCAATTCCAGAAAATTTTAAATTTGATATCTAATATATTAAGCACATCTCATCAATTTTTAATAATTATATTCAACATAGACTTCAAAATTTTTTTTACAAGAACATGTACAATTTCATCAAAAGAAGAAAAATATAGAGGAATTAAATTTCAATTAGTCAATAAATCAATACTCATATTAAGTTCTTTATGTTCTATATTTGCTTTTTATATTAAGGCACTTTGAGTTAAAACATCATGCCCTAACAATTATTTTTGCTTTTTAAGCATGACTAAAATTTAAAAATCTATTCTCCAATAAAAATTTTCCACCATATAATAACTCATGTACATTTTTTCTAATAACACAAATCCTAAAAAAATTATAAAAATCCTACATTAACCAATGATTTTCTCCACTAACATTTCTATTTATTGGGCTCAAAAATTCAAATGTCCCCATTATTGTCAAAGAATGATTGATGTCCAATGATTCAAATCTTTTACAAATTTTATTCTTAATATTTTTCATAATATCCAAAATATTTTTAAAAAAATATAATCAATTATCTATTTATATTTTTAAAAAATAGCTTTAGGATATGAATTAATTCATTTTAGCAAAAAAGAAAAAGTATTAATCAACACTTTTTTATCAAAACAAACAAACTAATTATTGTTTAGTTTCAATTTTTAATAATTCAATTCAACTTCACAATTTCTTAATTATAATTTCTATTTTCATCATCAAGCTAATTCAACTCTTACTCACATGTCATGGATTGTGAACTAATTATTTTATCTCAACTTGCAATTCTTTTAATTATATATCATATTTAATTTAATCTTGTCATTAAAAAAACAAACAAAGATAAAGATATAAACAATTTTTATTTTATTTTTACTCTTCATTGTACAATTAATTGTTAGATTACAAGTGGTGTATAATAAGCCAAGATAATTAATTAAAGTTGTGACCATCAATAGAGGGTATATGTGAGTATCTCTACTTTTGGGTTTGGAAATAAATAAATCTTATATCTTTTTTAAGTTTATAATTGACTATATTTGTTTGGTGAATGGTCCCTTTATTAGACTACATCAATGATATCATTCATGATTATTATAATTTTTTTTTTTTTGAAAAAAAAAATTTAGTAGTGTCCTCTAAATTTTGTGAATTTTGCAACTAGTTAAAGAAGTCAACCTTTGCCACATAATGATTGTTTTAGTGGTCTTATGATCGAGACGATATTGATCTCAAAATTTACATAGTGATCAATTCTAAATTGAGCTTTTAGTGAAAAATTAAAACGCTTATTTCATAAAGTTCTTTTCGTCCTAAGAAAAAATGATGTATGATAGGACAATATCTTCAAATGCGTTTCACACTATGAAAACCATATTTTACTTTGAAATAAAAGATGTGTGTCCATTATGTACATATATATATATATATATATATATATATATATATATATATATATATATTATATAGTTCTTTAATTAAAGATATAAAAGATGTACTTCCTCCGTTCGGTATTGTTTGTTATGTTTTCTATTTTTAGAGTCAAATTATAAAAATTTTGACTAACATTTTAAGATACATTTTTTCATCATATTAATTTGCAAAAAAATTGTAATTTATAGTACTTTTCATTTAGTTTCAGAATATCTATTTTTTTTGTTAAAAATATCGAATTAATGTGATCTAATTTACCTTTGAAAATTAGTCAAATTGACTTTTGATATGCAACATGACAAATATTTCTGAACGGAGAGAGTAGTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGGGGTCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGATGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGCTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCGGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGCGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGAAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATTATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTCCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGCGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGATGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTCTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAACTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTATAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAG</genome_strand>
        <mrna_strand>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCAT-CCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCATTGGGTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAATAGGGGGGGGGGAGAAAAACCTTTCGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="65828" stop="67076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66128" g_stop="66776" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66128" e_stop="66776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="66487" stop="67894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66787" g_stop="67594" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66787" e_stop="67594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGACTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319227" ref_strand="+" ref_description="SGN-U319227        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr5:24371050-24374140 FORWARD | Aliases: None(evalue: 2e-101, score=286) genbank/nr: protein(evalue: 2e-99, score=286)">
      <seq>cagtacatcactactactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaataagacaagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaggacaaaccttcaattttgaggactctatccattaaaagaattttcaattcaaagatgaacagaacttcatcattgcctataactccaattgaacactctaatccagaatcaacgcatggtgactacagagatgctacattttattcagttaaagcaggagtgcatcccatacttcgctcacattcagtgccaacactgatcaaagatgaaagcctaaaacagatggattgcgtagggaatgtctatcgtgtagtcccctcaactcctctcgtgccaagacatgatgatacatcatcaaatgcaactcaaactattggcgcagtgttatggttcagttgaaaatgctaattttggtggagacatcactcaagaagaggctgtctgcagaatctgcttcatcgaacttggggaggattcggaaactttgaagatggagtgtagctgtaaaggcgaactagccttagctcatcaatcatgtgctgtaaaatggtttagcataaaaggcaacaagatttgtgatgtctgtaatgaagaggttcggaacttacctgtcactcttttgcggattcaaagtactattcgtagaggaaatggatccccagctgactctgtccgatacagggtttggcaggacgttcctggtcttgtccttgtcagcatgcttgcctacttttgttttctggagcatcttttggttaccagaatgggatccggcgcgattgctatatctctgcccttttcatgcatcttgggtctccttgcatccatgacagcaacaactatggtgcaaaggcgatatgcttgggtttatgctgtcagtcagtttgccttggtggttctgtttgctcatgtgttctactcactgcttcgagtgcaggcagttctagctgttcttcttgccacctttgcgggttttggaggtgtaatgtgtgggacttcttttcttcttgagcttctgaaatggaggagtagatggaattattggtcaaatgagccacatgattctcaagaaggggcacagccaaatcaatcatcagaagttactcctacgcctcaggtagaaagtcaaactcgtcgagctgaagctggtacttctggagttgtcaatggaagttgatacaggacaaacataatctctttatatcaagaaaccaaagaaaaacactattttctgtctcttgtaagcaaaattattgtagtgtatagctagtccttgcaaatcacaactgtacagttttgagcttatatcaaagctctcgttcaaacttcagaattctaaacatgaacacgagacttgaaatgaattccactgtaggttgtaggttctttatcagggcgtaaggaatagtgttgcacgcaaaagacgagtggttcatttttccagtagatgggcagtgcatgaaaggaaactgaaataatgtaaataccataactttacaaggatctcttctcctgttatagaagaattagatcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="71969" stop="78619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72269" g_stop="72550" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72551" i_stop="73565" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73566" g_stop="74057" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="774" r_length="492" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74058" i_stop="75056" i_length="999">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75057" g_stop="75228" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="946" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75229" i_stop="76233" i_length="1005">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.363" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76234" g_stop="76532" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1245" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76533" i_stop="76851" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76852" g_stop="76924" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1318" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76925" i_stop="76994" i_length="70">
            <donor d_prob="0.631" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76995" g_stop="77085" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1409" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77086" i_stop="77231" i_length="146">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77232" g_stop="77311" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1489" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77312" i_stop="77724" i_length="413">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77725" g_stop="78318" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1490" r_stop="2097" r_length="608" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2098" polyA_stop="2123"/>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U319227" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>2083</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72269" e_stop="72550"/>
          <exon e_start="73566" e_stop="74057"/>
          <exon e_start="75057" e_stop="75228"/>
          <exon e_start="76234" e_stop="76532"/>
          <exon e_start="76852" e_stop="76924"/>
          <exon e_start="76995" e_stop="77085"/>
          <exon e_start="77232" e_stop="77311"/>
          <exon e_start="77725" e_stop="78318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTTGTAAGTATTTATATTTGCTCGTGTCGTTAATGCTGTGATTGAATTCACTATCTTCTTCTTCCGAACTGTAAAATTCTCAGTGAGGTTATGCTCCATTGAGTAATAAATGGTAAAAAAGCACAGCCAAGGGTGTGGTCAAGGACTGGAATATATAACTCCAGTTGAACACTCTAGTCGAGGTGCATGCACCACGGTTATTAAAAAAATGGTAAAAAAGCTGCAAATTTGGGTAACTCACAAAGGAAAAAAAACTCAAGCTATGTAAACATCTGTTTACATCTTTAAGCGTTTGAATACACAAGTATGGAAGTGGAAAGACCAAATGAAAAATGAGTGTAGTTAAAACATAAGCATGATTATTCTTCCCCAACTAGATTTTAATAGGTGTTATGCTCGGACTCTTCACTTTTGGTGTTGCATCCGAGTCAACATGATGTGGGTGTGACTGTGAGATTCGTACCCGTTTTGGGTATTTTGACCGAATTTGATGGAGAAATTTTGGACAGATTCAATGATTTCTGTGCACAAAACAAAAACTGATATGAAATTGAAGAAAATGGAATACCTTGTGTATATAAATTTCTATTGTCACTCCCTTTCCTTTAATCTCCTTCCGGATTCTCCTTTTGATCAAGATTTTCTCGTCAAGTTTTACATGTAATATCTCATAATTTAGGCTTTATAACTCTATTTTTAGTTACTGTATGATTTTTAGCTGAATCCCCCGCACCTGTAGATCCGTATCCCTAAATCTAAAAATTTAGATCTTAGAGGATCCGACCTCTAGATCTGCACCCGTATCGGACACCCGCACCCGAGTCCGAGCAACTTAGGGTGTTAATGCATTTACCTGGATGTTATATCTGAATGTATGTAGAGATCCAGGATACTTTTACTGGTTTGTTGCTATGAATATAAATGTCTTCGTAATTTCACTTAATGTTCAGTATTTCCTTTTCTCTTGTTGTTTCTAAATCTTACAAACTCACCGCCTTCTAGAAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAGGTAATTTGTTTATGTCTAATCATGTTTGATGCATTGTCACATGATAAAGGCTTTTGTTCTGCAACTGGTGATTCTTTGTTAGATAAGTCTTGAATGCTTCGTTAAGTCTGAATTTACATACCGAGTAAGAAGCAGTTGCTTGGATACATGTGTGACTTACTTTTAGGAAGCCAAACAAATAAAGAATTTTCAACCTAGGATTTCACAATACACTCTCCGTCCCTATGATGTAGTTTGACTAGGCACAATGTTTAAGTAATATGAGAAGACTTTGCTATGTTCCAAAAATTTCCTTAAAAGAAATAAATTCTTGAATAGAGGAGTACACCTTTTTGTGGACTTTTTGCCAAATAAGTGGCATCCAACATGCATAAAATGTTGATAGTGTTGTTAAATTTGCCAAGTAAGGTAAACTGTCATTCATTTTTGAACTAACTATTAAGGAGGGTGTGTCACATAAATTGACAGAGGGAGTATAAATTTATAAAAATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCGATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAGGTATGCTCATGGCCGTTCCTTTCATTTCTTTTTTTAAAATATATATCTTTTGAATTAAAGTTAACTTCATTCAGTGCCTACACCTTTCTGTTAACTTTGTTCACTACTTTGCAACAGCCACTAGGAATTACTATTATATGTCTCGAGTTTTAATACAATTTAATGATGAGCGACATTTCTTCGTTGAATGAACTTTATAGTTCTCTAGTATTTCTTATGAGGAAATAGCTCAAGTTTAATCGCATGGTGACTATCGAACGAAGAAATGTTCAATTCAAATTATATGGTATTTTACTTGACGTGTGCAAACTGCTTACAGGGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTGGTGAGTAAAAGACTAATGCAGTAATGTCATCCTACTCCAGAAAAGGATCTTAAATAATGCTTGTTTATAGGTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGGGTACATGAACTAAACAAACACCCTCCGTTTCAGAAACTACTTTCGATTTCAGTTTAACAGTGTCGGTGTTTCACTTTTTTCTTCTATTTGCTGGTATACATTATACAGTAATATAACATATAAACAAACATGCTTTATTTGTTTAGTGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTGGTAAGTTATGCTTCAGGTCAAATAAACAAAATACTTTAGGTAGAGAATACATACACAATCACTAAAACTTGGCCTCAACGGACAAGTAAGCACTACAACTTTGAGAGTGCACATCTAGACACCTCAACTTGGTCTGAACTGACAACTAAACAATCCAACTCGTCTTCACTGTGTCTCGTGGACACCAGACACTGACCTGACACATGAAGAAGCGTTGATGTGCATTACTCAAAGCACGAGTGCTTCCTTGCCAGTTGAGGCCATTAAGTGTCTGTTTATGTATTATGTATTATGCCATCATTTCACCTGACCACTCGGAAAGGAAAAAAAGAAGAAGATTTTCTGAATTTCCTGAATTGCCTCGGGCTCTGCCTAATACTAAAAACTCTCTCATCTTATGCTCGGGATTGTAGCTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGG-----T-T-----C---AGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</genome_strand>
        <mrna_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACAAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG...............................................................................................................................................................................................................................................................................................................................GGTTTGGCAGGACGTTCCTGGTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCATCTTTTG......................................................................GTTACCAGAATGGGATCCGGCGCGATTGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG..................................................................................................................................................TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTACGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGAAAAACACTATTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAATCACAACTGTACAGTTTTGAGCTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCCACTGTAGGTTGTAGGTTCTTTATCAGGGCGTAAGGAATAGTGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACTTTACAAGGATCTCTTCTCCTGTTATAGAAGAATTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330346" ref_strand="+" ref_description="SGN-U330346        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); similar to Dystrophia myotonica-containing WD repeat motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274) (Mus musculus); simlar to DMR protein GI:18028289 (Homo sapiens); | chr3:19803509-19807731 FORWARD | Aliases: F4P12.90(evalue: 4e-05, score=45.1) genbank/nr: WD40-like(evalue: 0.0001, score=49.7)">
      <seq>cattcactcatgaatcagtgcttactgtctgccgggaagggcacattaagatctggatgagaccaggctttggtgaaaaccaatcaagcaactcagattctttattgagtactagtctaaaggagaagacatcgttatcagggaagactctttcttcgagttacaagcaatgacataacaatcatacaacgggttgcaaagtagaggatgcagtaagtgggggtccttttcgtacatactaccattgactgctcttcaattagtttgctcatttctaataagcacatgatatgacgttgctcgatgagattaactgaccaattgtatagcgaacaatgaagatgctgctgggagcaagaccaggttggaagaacagtatgtacctagcggtaagtatgaaatgcttaacaagaacttctaagctgatgtgctgaaataatcgatgttgtcttttgagatgcgaaatttctagttcccaccctgctagaactctcccagcccctcccttttcccctctttgttcttttctttcctttttttcttcctctgtaggcaatttttcctagtaactactggttgacatttttgtattggattacctcatgttttgccctgtctaatattttggccgtggcgtatgaggctgataaagcttatttaaggcattttttcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="79903" stop="58000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79603" g_stop="78914" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U330346" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79603" e_stop="78914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCTGGGAAGACTCTTTCTTCGAGTTACAAGCAATAACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGT-GGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGATCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAATTTTCCTATGCA</genome_strand>
        <mrna_strand>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCAGGGAAGACTCTTTCTTCGAGTTACAAGCAATGACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGTGGGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGACCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATGTTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329274" ref_strand="+" ref_description="SGN-U329274        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to Dystrophia myotonica-containing WD repeat motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274) (Mus musculus); simlar to DMR protein GI:18028289 (Homo sapiens); | chr2:15615907-15620013 FORWARD | Aliases: T2N18.8, T2N18_8(evalue: 4e-31, score=131) genbank/nr: gi|26451505|dbj|BAC42850.1| unknown protein [Arabidopsis thaliana](evalue: 3e-29, score=131)">
      <seq>gaagaagaagaaataggtgaaaaaaagtcaatatcatccttcacaaaacacttgatctagaagcaattgacaccctagaagattcataaaccgattgtttaaatgatctcataaaccccatatgttgaatttttgataggaacagattttttttttttgattttgatttggtgaagaatgatgaattctgggattagtagtaattcgatgtcgtcttcatcggcaccggggaataacagcagtaacaacgcacaatcacctggtttgaagacgtatttcaaaaccccagaaggaagatacaagcttcagtatgagaagactcaccctgctgggcttcttcattatgctcatggaaagactgtaactcaggtgactcttgctcatctcaaggataagccggtgcatgcgcagccccaagcatcatcaagttttggtgtgagcagtggtgttaggtcagctgcagcaaggttcttaggtggaaacggtagtaaaacacttagttttgttggaggaaatggtggaggtaagtctatcagtggcctgagtggtagggttggatcatttggggtgtcaagttcaagtagttctgttggtaattcaaattttgatggcaaaggaacctatttagtgttcaatgttggtgatgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="87523" stop="84860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87223" g_stop="86853" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86852" i_stop="85443" i_length="1410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85442" g_stop="85160" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="652" r_length="283" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U329274" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87223" e_stop="86853"/>
          <exon e_start="85442" e_stop="85160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAATTGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAGGTATTATAAAGATTAGCTCTTTAGCTTTCGTGGGTAATTGTCTTTTTCGTTCTTAATTGTGTTTATTGATGTTAATTTCAACTTTAGTGGTCTGTAAGATGTTCAAAATTGGATTTTTGAGTTGTGTTTTAGAAGGGGTTAGGCTAATATGGGTTAATTTCAAATATTTAGAATGAGTTTGAAGATTAAGGTAGAAGGCTAGTTAGTAGTTGTTCCCTCGTTTCTTTTCCTTATTTTTCTATGACTACTAATTGTTTTGCTTCGATATTGTCATTATGCTCATGTAGAGATTGTAACACAGGTATAACGATTCACTCTTAAGCTTTGCCGAGTTCTTGTCCTTTTCCTTCTTAATTGCGATTATTGATGTTAATTTCAACTTTAGCAGTTTGTAAGATGTTCTAAACAGGATATTTGAGCTGAGTTTTAGAAGGGGTTTGGCTAATATGGGTTAATTTCAAACATTTAGTGTGTGTTCGAGGGTTAGGGTAGAAGGCTAGTAAGTAGTTGTTTGCTTTTCCGATAGTTTACTATTATTCGTTTCTTTTCTTGCTTTTAGATTTCTATCACTACTTGTTGTTTCGTGTCGATATCTTCTGAAGAGACTGTGACAGAGGTATAACGATTATTCTAAACTTTGGTGAGTTCTTGTCTTTTTCCTTCTTAGTTGTGTTTATTGATGATGATTTCAACTTTAGTGGTTTGTAAGATGTTCAAAATTGGATTTTTGAGCTGAGTTTTGGAAAGGGGCTGGCTAATATGGGTTAATTTAAACATTTAGTTTGAGTTCGAGGTTAGGGTAGAAGGTTAGTTAGTAGTTGTTCCCTTTTCCCAGAGTTTATTCTTTGTCGTTCTTTTTCCTTATTTTTAGATTTCTACCACTACTTGTTGTTTTGCCTTGGTATCTTTTTCCTTGTTTTTAGGTTTACTTGGCACCTGTATTGATTTTGTGGATGTAACATGTTAGGGTGGAGTAGTGGATCAATGGAGGTCCGTGCCCCTACACAATCCTTCTCCTAAAAACAAGTAAAAAGAGGTCACTTTAAGTTTACTTGGAACCTGTATTTCAGTATTTGTGGGTGTAGCAGTTTACCTAGAGGATCTGTCAAGGCTCATACCCTAACATAGCCTTTTCATATATAACAAAGGTTAATTTTAAGTTCAGGTAGTTTTTGTTGGGTATAGTTGTTGTCGTTCTGCCAAATTTTCAAGATTTTTGCCACTTAGTTGTGCTGGGAACTTCTGAGCAATGAATTTTTATAGTTAATTGGTTAAACTTTTTTGTGTCTTTTCACCCCATATTGAGAATTCATTATCTGACTTTTCGCTCCAAATCGAGAATCCGTTGGTCTTTTTATCCCAAATAGAGAGTCCATATTGAGATAATACTGAAATAATTTTGATTTTCAGGTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAATAGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGA--TTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTTGCTCATCTCAAGGATAAGCCGGTGCATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGCAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330343" ref_strand="+" ref_description="SGN-U330343        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | fasciclin-like arabinogalactan-protein (FLA12) | chr5:24342953-24343928 REVERSE | Aliases: MUF9.12, MUF9_12(evalue: 2e-50, score=196) genbank/nr: gi|30841338|gb|AAO92753.1| arabinogalactan protein [Gossypium hirsutum](evalue: 6e-54, score=213)">
      <seq>aaaaaaatgaaacacattttcttgatattgttctttttcttgttgaaatgcattggcattttgtcacaagctccagctccggctccaggtccaccacctccattaaacgtgacaaagatactcgaaaaagcaggtcaatgttcaacgttcatacgtctactacaaaacacacaacaactcaatgaaatcacctcacaactcaacaattccaacaatggaatcacaatgtttgtgccaacagataatgcatttttaaacatgaaagcaggcacgttgaattcgtttaacgatcaacaaaaagctgaacttatccaattccatatccttcctacatactattcactcactcaattccaaactgctagtaaccctttaagaacacaagctggaggaacaacggatagagagttcccgataaatataacaacaactggaagttcagttaacattacaacaggaattgtgaatgcaagtatatcaaatacaatatatactgataaccaattggctatatatcaagtagacaacgttcttcttccgttacaattctttgttcctccagcaccagcaccagcaccaacacctataacgcgtaaaaggaaagcaggatcctctgactcttcatcaaaacaagatgcttcctctgctacttctctgcttcaagaaatgtacaatgggatgattttcattttcttgttttctactgcatttttttcgagtttataagtatgatgatcatgttagtatttgtgtgtatgtatgcttgtgattctttacctatatttcattgaaaatgaattttgagtgttttcaagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="91029" stop="89609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90729" g_stop="89907" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U330343" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90729" e_stop="89907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAATAGATC</genome_strand>
        <mrna_strand>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340697" ref_strand="-" ref_description="SGN-U340697        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 2e-14, score=82.8)">
      <seq>ggcacgaggctgcatagcataaagtacagtaggctcttcttatactctgattcccaagaagtttttgctttgcagataccatttttatctcttttttagctttagctttaaggagaatcatttggatcaattaaacagatccattttgtaactttctagctgatgtagttacattcttaaatagtgttattctgaaaccaagtgaagtgattctccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="97960" stop="58001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97669" g_stop="97453" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97452" i_stop="97100" i_length="353">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97099" g_stop="97081" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="235" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U340697" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340697" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97669" e_stop="97453"/>
          <exon e_start="97099" e_stop="97081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTAAATATCCTGTTATAATTTTAGGATAATGTACTATTATGTGTCAAACTTACAGGTAAGTTTTTTGATAATTTTTAGAACTTTTAGACTGAAAGTCATGTTTCAAGTTTTTCCTGAAGTATCAAGTCATGTTTCATTTTCTTCAAACAAAGAAAAAGAGGAGCTGACATGTTTTCAAAAATTATGGTCAAATATATTTTGAAAATTCAATAAACTTCTAAGCTGTCACATTTTAAATAAAGATATGTATTTATTGGACAAGTAAAAGTGCTGTAAACTTCGTAGCAATTAAAAAGAAGATATCTATTTATTGGACAAGTAAAAGTGCTGGAAACTTTATAGCAATATAAAATGTACATAACAAGGACAAAAATAA</genome_strand>
        <mrna_strand>GGCA-CGAGGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTCC.................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325170" ref_strand="+" ref_description="SGN-U325170        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G03160.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to P58 protein, Bos primigenius taurus, PIR:A56534; similar to p58 (GI:1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ domain; contains Pfam PF00515: TPR Domain | chr5:750121-753656 FORWARD | Aliases: F15A17.190, F15A17_190 (evalue: 1e-169, score=593) genbank/nr: gi|32395916|gb|AAP41818.1| P58IPK [Lycopersicon esculentum](evalue: 0, score=805)">
      <seq>tctataggtgaatttgcaaagttgaatgatggagccattgatgaagatatggagctttgatcttgtggcatggaggggtttcttgttttcagcattgatacttaactttatattcgcttgccaactctttttccttcaaccccttgtatctgctttagacgccaaacctggtgatgctgctgcattgtttgagagagttgcacaaaatgtaaaagttaagaaatacagtgaggcacttaatgatctaaattcagccatagaggcagacccaacactttcagaggcgtattggcaccgtgcatctctccttcgtcagttgtgcagatatgaggaatcggaaaaaagctacaaaaagtttctggagatgaaaccaagagactcagctgcagagaaggagctttctcagatgcaccaagctaagagtgctcttgattcagctaccaacctgttggacacggatgacattaaaaaagcgttggagtatattgataaagtcgtactagttttctctccagcatgctccaaggccaaactccttaaggtgaagctattgctagcagataaagattattcaggtgtcatatccgaggcaggatttatacttaaagaggatgaggataatctggaggctttacttctacgaggccgtgcctactactatctggctgatcatgatgtatccttacggcactaccaaaaaggtcttcgttcagacccagagcacggggaattgaagaaagcctattttggcttgaaaaacttacttaaaaaaactaaaagcgcagacgataacgtaagtaagggtaaatttcgtcttgctgtggaggagtacaaagcagccctggcgttggaccccaaccattctgcacataatgtaaatcttcatcttggtttgtgcaaagtcttggtaaagcttggaagggggaaggatgctatatcaagctgttcagaagcccttgaacttgatggagagcttatcgatgctctagtgcagaggggtgaagccaagcttctaacagaagattgggagggagctgttgcagatttgaaagaagcagctgaaaaatctcctcaggataggaatattcgtgaagtgctgatgagggctgagagatcattaaaattaagtaaacggaaggattggtataagatattgggagtgtcaaagacatcatctgtatcagagataaaaaaggcatacaaaaagcttgcgctgcaatggcaccctgacaagaacgttgacaacagagaagaagctgaagaaaagtttcgtgaaatagcagctgcatatgaggttctcggggatgaggaaaaacgtacacgatatgaccaaggggaagacattgaagacatgggttcagggatgggtggtggaggattcaacccattcggtggaggatttggtggaggatttggcggaggagggcagcagtacacattccactttgaaggaggatttccaggtggaggcgggggagggggatttggcggatttcatttttgacctccatggcgttcgtttatactcctctcatggttgctgcatagcataaagtacagtaggctcttcttatactctgatttcccagaaatttttgctttgcagataccatttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="102944" stop="97281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102644" g_stop="102487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102486" i_stop="101240" i_length="1247">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101239" g_stop="101074" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="324" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101073" i_stop="100541" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100540" g_stop="100339" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="526" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100338" i_stop="100251" i_length="88">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100250" g_stop="100090" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="687" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100089" i_stop="99967" i_length="123">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99966" g_stop="99873" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="781" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99872" i_stop="99455" i_length="418">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99454" g_stop="99242" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="994" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99241" i_stop="99088" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99087" g_stop="99007" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1075" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99006" i_stop="98369" i_length="638">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98368" g_stop="98150" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1076" r_stop="1294" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98149" i_stop="97906" i_length="244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97905" g_stop="97581" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1295" r_stop="1619" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U325170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102644" e_stop="102487"/>
          <exon e_start="101239" e_stop="101074"/>
          <exon e_start="100540" e_stop="100339"/>
          <exon e_start="100250" e_stop="100090"/>
          <exon e_start="99966" e_stop="99873"/>
          <exon e_start="99454" e_stop="99242"/>
          <exon e_start="99087" e_stop="99007"/>
          <exon e_start="98368" e_stop="98150"/>
          <exon e_start="97905" e_stop="97581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAGGTAAAGATCAAATTTTTATGACTATTTTTGTTTGATTTTGATTTGGGGTTTTCGATTTTTATGTTAGCTGTAAATTTGGGTTACTCAGATTTGTTTGATTTTTAATAGTGACAGTTGATTTGGGGATTTTTAACAGATTTGAGCTTCGTGGTAAGGGAATTTGTTTACATTGTAGAGGTTTCTGATTTTGAGCAAAATCTTGAATGCATATTGCTGTTGTATATGAGTTGGTGAATCCATTTGTGTCTAATTTCTACTTGGGAAGTGTAAAGATCATAACTTTAATTGTTGAAAGAAATTAGTAGTGAAGAAGAACTTTTTTCGCGATGAATAGGCGTATTGCTAGGCAATATGAGACTGAGGAAGTAGTTTTTGCTGTTCTTTTTGAGGTGGGGTGTCAATTAACCTCAAAGATTTGTATCCTTTATGTTCTTTTTAATGTTGATAATGAGGATGTGAGACACCAATTTAGGCGACCGTTTCAATTTGTTTGTCTAGCATAGAGTTTGTATTAAATTACAGATATGTACCAAAATACTCTTTAATGTTGTAGTCTTAAACCTGTAATGTGGAAAGTTAGAACTAGAGAATTGCCAAAAAAGAAAAAAGACAGTCTCTTTTAAATGGAGTAAAAGGTGGAAAGTAAGGCAAACAAATTGGAATGGAGGGAGTAATAAAAACTTAGACAGAAGGGTCAACTGTGCCAATCTTAGGTCCTGCTGTAGTGAGTGAGAACTATATCTGGAGAACTGATGAAACAGGGTTATTCTCTTTAAATTTGTTGTTGAACGTGTCTTGAGTGAGCAGTTGTTTGCAATGAGGAATGATCTGCGGAATCATGCTCCTGTTAATATCTATAGCTTGATTCAAATTATCACATCTGGAGCTTTACCTAGAAATTTCCGAGAGCCGTAATACTGTTTTTGGATGAGAAAAATTGTTTCTTATTATTTAAATCGAGCTCCCGCTAGCATCAAGTAATGTAAAGTGCATCTTGACGAAGGACACTGTTAATTGTTTCATAGAAAGGGCGTTCAATGCTGATTTATGATGTGTCTATGCTCCCCTCTCCAATTGTTGCTGTTATGATGAAGGGTTAATCTTCATTTAAGTGATGAAACGCGAGGGTTTTCTTTATTAATGTAGTTAGGAAATACAAACGAAGTATGCTTTATAGTGTTCTCTTGTCTTGTAATTGAAGTGGCACTTATTGTTCTCCTGATACATTTGCTACTCTTGATGTGTAGACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAGGTTGAAATCAATTTTCCTTTTGTTTTTCTTGTACCAGCTCTAGTATCATGTATGTCTTGATTCTTAGTGAAGGTCTTCCTGATATAAGCTTTTGTACCTCTTCATTTCATTGGCAACTTGCTTGAGTAATTTACTATCTCAAATACTATTTGCTTCTTTTCTTTTTTTTTGATAAACTGAGGCAAGCTTTCGTGCTCTTCGACTAATTCCATGGGATACCTGGTACCTCCCACTAGGTAGCAGATAACTCTATCACCAAGGCCAGGACAGATGGAAAGAATCACCTAGTGTTTTTTTGTCTCTGCTGGGATTTGGACCTGAGACCTCATGTTTACAACCCACTTCATTGACAAGTACGCCACACCCTTGGGTGTTGTGGGTTATTTACTTTTGCATGGTGCATAAATGCATCTGTTATCCACAAGTCTTGTTTCTGATTAATTAGTATTCAAGCATGTTGGGCCTTGTCTCTACTGGTAAACTCTGATGTGAAAAATTTGTAATTTATCCTAATATTTTTTGGACTAATGTAGATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAGGTATTCAATTTTGTACTATTGATGTAACTTCATGTGTAACCATTAAGTGTTACACCTATGATGATGTCTTTTACATGTGAATTTCTAGGCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACGGTATGCCTTACGAAATCTATCAATTTGGTCCACTATTTCCTGCCTCCCACTACACCAATCCATGAAAAAGGTAGCATAAAGGTGTAAAGAGAGCCTAAAGAAGCCTTTTTGTGCTCTTTGCAGGCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGCGTAAGCCTTACTTACTATTTTTCCCTACAGCTTGTTTGGAGGATTGTTACATATCATTTCATAATATATATTATTGTACTCTGTTGTTTTGATGCATACAACATTTTGGATTAAAAGAAAAGGGGTAACGACTCGACCACACCAAATGGGCTGTTGCATATAATGGAAATTAGATTTATCGATACGATACAATAATATTCAAGTAACATTAGACATACAGTGTATTTAAACTATTTCAGCATCTTCTTGATGCCCATTAATGAACAACTTCACAAGAAAAAACGTTGTATTTAAACTAAAATACAATACAATTGGTAGCAACCATCTAAACAAGCTTTAACTACAATCCTTTATCCTGTTGCTATATCTCCAAGATATGTTACAATGTGAGCTTCTCAAACCCCAAACTTTTGTGCAGGCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAGGTTCAATCTCTATCTGCTTTCTACTTTTTTCGACCTTCAAATAGTCAATGACATTAGGATGACTGAATTCTATTAGACCAATTGTCTGCTTAGAAATATCTAGTTTACACCATAAAGAATCTTGAATCATTTAGTTGGACATTTTTTTTTACAGAGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAGGTCTGTTGGCAACTTTTTTCTTTGGTTTTATTTGTTTATATTTTTCGCTGTTTAAACCTTTCTTCATGTAGTAATATTGCATCGAAGATGCGAGAAGACATTGGCATGACAACTCAATCATGCCATCACATTGTGCATATATGATATAATGTCCTTTTTTTTGAGGGGGTGGGATGGGTTTGAGTTTTGCATGTAAGAAGGATTAGATTTTGCGAATTTCGTGATAGCCATGACTAGTGGCGGAGCCAGGATTTTTTTACTAAGAATCTATATACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAATCAGGATTCAGTCTCCCAAGTTGAAGTGAGGTCCTTCCTTTTGACTCAAACTTGCTTTGCCACTAGGCATGACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAAATCAGGATTCAGTCTCCCAAGTCGAAGTGAGGTCCTTCCTTTTGACTTAAACCAAGTTTGCGGGGTTTTTGTTCAAGCAATTTGTTGTTGCTTGTCTTTTTTTTTTTTGCATAGAAAACCATCTATAATGTGTGCTCGTGCTTGATCGTTTTTGTCAAGGTTATTGTTTTAGCTTTGATCTGGATATCAAATAATCTGAAGTACACTTCTATAGGATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAGGTTTGTTTTTGTTTTTTCTTTTCGATCATTTTTCGTTTGAGCTGTTGAGTTCTTTTTTGGTTTTGCAATCGTCTCAAGTATTTGGCCGCTACAGCAAAATGTTGTAATAGAAAACATAGAGCATAACATAAAAGATCCGTAGCACATAAAACATAGTTGTTATAGTGAAATATTGTATTAGAGGATATGACTGTTAAAGAAAATTCTGACTGTTTTTGTCTGAATGTTACGTATCTCTAAACAGGTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTAT</genome_strand>
        <mrna_strand>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAG........................................................................................GCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACG...........................................................................................................................GCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG..........................................................................................................................................................AGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG....................................................................................................................................................................................................................................................GTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTTCCCAGAAATTTTTGCTTTGCAGATACCATTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="+" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="103526" stop="104570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103826" g_stop="104284" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103826" e_stop="104284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCAAATACGGAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAAGAATGAAAG-AAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATA-ATTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAAATAATTTTTTAATTTCCGTTAAATAAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGACACTTTTATAACGA-GGATATATCAGCTCTAAATGACAAAGTCGAGGGGTATATCAGACCCTTTCCCCTAAATTTATTTTATTCTAAAC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT-ATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="139774" stop="138733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139474" g_stop="139035" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139474" e_stop="139035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAAATTTTTTTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTCTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATGATTATAATAAAAGAAGTCACAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTAAACTTTGATAGAA-AATCATATATACCCCTAAATAATTTTTTT-AAAAAAAA-TAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGAGTATATGCGAGCCATTTTGTAACGACAGGGGTATATATGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTATAACGAGGG-TATATTAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTT-TATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312502" ref_strand="+" ref_description="SGN-U312502        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L5 family protein, contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5 | chr4:543970-545535 REVERSE | Aliases: F2N1.5, F2N1_5(evalue: 4e-96, score=348) genbank/nr: gi|50400727|sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplast (evalue: 9e-95, score=350)">
      <seq>cacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaataaaaataagaattgtttttatctctagttaagtttttactattcatgaatcttgattactgtaatttgtatgttattaaatatttcctacccgctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-5d6XF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0068C01.1" temp_strand="-" temp_description="C09SLe0068C01.1  EU180575.1 htgs_phase:2 submitted_to_sgn_as:C09SLe0068C01 upload_account_name:spain">
        <position start="147619" stop="145496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147319" g_stop="147041" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147040" i_stop="146613" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146612" g_stop="145796" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="1096" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1097" polyA_stop="1106"/>
      <MATCH_line gen_id="C09SLe0068C01.1" gen_strand="-" ref_id="SGN-U312502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1096</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147319" e_stop="147041"/>
          <exon e_start="146612" e_stop="145796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</genome_strand>
        <mrna_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13505" PGL_stop="13851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13505" e_stop="13851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="13505" e_stop="13851" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13505" stop="13851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341873" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGACTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCACCAA</gDNA_template>
            <first_frame> L  K  L  A  E  I  A  E  Q  A  L  R  E  N  P  A  E  R  P  D  M  S  Q  L  A  L  L  L  E  Q  L  V  K  D  V  M  I  S  *  T  L  C  R  S  F  I  L  S  F  W  W  I  E  I  F  Q  K  T  K  S  E  D  S  I  L  V  S  N  D  A  L  L  Q  L  Y  I  S  M  S  S  L  *  I  L  C  L  Y  F  L  F  A  T  F  L  D  K  C  Q  Q  *  I  F  N  F  F  L  *  Q  *  N  L  *  C  C  T   </first_frame>
            <second_frame>  L  N  L  L  K  L  Q  S  R  R  C  G  K  I  L  L  S  A  L  I  C  H  S  W  H  F  C  *  S  S  *  *  R  M  *  *  Y  H  R  L  C  V  G  V  L  Y  *  V  F  G  G  S  K  F  F  R  K  Q  N  Q  R  I  A  Y  W  *  V  T  T  L  F  C  N  C  T  F  L  *  A  P  C  K  F  C  A  Y  I  F  Y  L  P  H  S  W  T  N  V  N  N  K  F  S  T  F  S  Y  S  N  E  T  C  D  A  A  P  </second_frame>
            <third_frame>   *  T  C  *  N  C  R  A  G  V  A  G  K  S  C  *  A  P  *  Y  V  T  V  G  T  S  V  R  A  A  S  E  G  C  N  D  I  I  D  F  V  S  E  F  Y  I  K  F  L  V  D  R  N  F  S  E  N  K  I  R  G  *  H  I  G  E  *  R  R  S  S  A  I  V  H  F  Y  E  L  L  V  N  F  V  L  I  F  F  I  C  H  I  L  G  Q  M  S  T  I  N  F  Q  L  F  L  I  A  M  K  P  V  M  L  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22247" PGL_stop="21239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22247" e_stop="22115"/>
            <exon e_start="21857" e_stop="21239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="22247" e_stop="22115" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22114" i_stop="21858" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="21857" e_stop="21239" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22247" stop="22115"/>
              <exon start="21857" stop="21239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACGCCATCAGTGGACACTTAACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAG : GCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAATAATTGAGT</gDNA_template>
            <first_frame> I  R  H  Q  W  T  L  N  T  Q  V  R  C  L  *  L  W  S  R  V  T  R  N  S  Q  R  F  T  S  S  C  I  R  H  Y  S  R  R  A  F  P  C  *  Q   : G  M  G  N  V  Q  C  *  P  T  V  R  A  S  R  P  C  F  G  *  R  T  S  E  *  R  *  S  S  P  I  L  E  G  W  P  P  L  C  A  R  E  R  Q  P  P  P  Q  N  V  H  G  H  Q  D  V  E  S  *  W  R  D  N  S  *  *  N  E  D  Y  S  A  W  D  C  C  *  S  N  G  C  *  D  R  Q  K  T  L  F  S  K  L  F  F  *  S  F  Y  K  H  E  P  R  K  P  L  P  N  S  *  *  K  K  K  *  *  L  E  N  S  R  G  T  H  K  L  V  Q  T  S  R  L  *  K  K  N  R  I  Y  L  Y  K  E  Y  I  V  H  T  H  R  Y  T  C  T  K  F  D  H  F  F  F  *  L  L  D  Q  L  Y  I  N  V  S  S  *  V  F  N  F  F  K  F  F  F  G  I  F  G  S  I  *  C  K  S  Y  L  *  *  H  F  F  *  F  F  N  N  *   </first_frame>
            <second_frame>  Y  A  I  S  G  H  L  T  R  K  S  D  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  S  P  V  V  A  F  D  I  T  R  G  E  H  F  L  V  N  K  :  A  W  E  M  Y  N  A  D  Q  L  L  E  L  V  D  P  V  L  D  R  E  L  L  N  D  D  E  A  L  R  F  L  K  V  G  L  L  C  V  Q  E  N  A  S  L  R  P  K  M  S  M  V  I  K  M  L  S  R  D  G  A  I  I  V  D  E  M  K  I  T  Q  P  G  I  V  A  D  L  M  D  V  K  I  G  R  K  H  S  S  Q  S  F  F  S  K  A  S  T  S  M  S  P  G  S  P  F  Q  I  V  N  R  R  K  S  N  S  *  K  I  V  E  V  R  T  S  W  F  R  H  H  D  Y  K  K  K  I  E  Y  T  C  T  K  S  I  L  C  T  H  I  D  T  L  A  L  S  L  I  T  F  F  F  N  C  *  I  S  C  I  S  M  *  A  A  R  S  L  I  F  S  N  F  F  L  E  Y  L  V  P  F  D  V  K  A  T  F  N  N  I  F  F  S  F  S  I  I  E  </second_frame>
            <third_frame>   T  P  S  V  D  T  *  H  A  S  Q  M  F  I  A  L  E  S  C  Y  *  K  *  S  A  V  H  Q  *  L  H  S  T  L  L  E  E  S  I  S  L  L  T  R :   H  G  K  C  T  M  L  T  N  C  *  S  *  *  T  L  F  W  I  E  N  F  *  M  T  M  K  L  S  D  S  *  R  L  A  S  S  V  C  K  R  T  P  A  S  A  P  K  C  P  W  S  S  R  C  *  V  V  M  A  R  *  *  L  M  K  *  R  L  L  S  L  G  L  L  L  I  *  W  M  L  R  *  A  E  N  T  L  L  K  A  F  F  L  K  L  L  Q  A  *  A  Q  E  A  P  S  K  *  L  I  E  E  K  V  I  A  R  K  *  S  R  Y  A  Q  A  G  S  D  I  T  I  I  K  K  K  *  N  I  L  V  Q  R  V  Y  C  A  H  T  *  I  H  L  H  *  V  *  S  L  F  F  L  I  V  R  S  V  V  Y  Q  C  E  Q  L  G  L  *  F  F  Q  I  F  F  W  N  I  W  F  H  L  M  *  K  L  P  L  I  T  F  F  L  V  F  Q  *  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22246" stop="22115"/>
                    <exon start="21857" stop="21507"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAISGHLTRKSDVYSFGVVLLEIVSGSPVVAFDITRGEHFLVNKAWEMYNADQLLELVDPVLDRELLNDDEALRFLKVGLLCVQENASLRPKMSMVIKMLSRDGAIIVDEMKITQPGIVADLMDVKIGRKHSSQSFFSKASTSMSPGSPFQIVNRRKSNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23814" PGL_stop="22450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23814" e_stop="23653"/>
            <exon e_start="23555" e_stop="23440"/>
            <exon e_start="23310" e_stop="23094"/>
            <exon e_start="22618" e_stop="22450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23814" e_stop="23653" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23555" e_stop="23440" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23310" e_stop="23094" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23093" i_stop="22619" i_length="475"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="22618" e_stop="22450" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23814" stop="23653"/>
              <exon start="23555" stop="23440"/>
              <exon start="23310" stop="23094"/>
              <exon start="22618" stop="22450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG : GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG : GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG : GTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGAAAGGAGTTTCGATAGGAATAGCAAAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</gDNA_template>
            <first_frame> P  N  S  S  C  F  F  H  I  L  S  P  L  I  F  L  K  N  Y  F  F  I  K  T  K  F  Q  E  S  *  S  F  L  F  H  L  S  H  V  L  A  H  Q  Q  I  I  L  K  A  A  K  S  H  M  :  V  D  K  F  P  R  I  L  Q  C  T  L  T  V  N  *  K  L  Q  L  M  D  S  E  L  Q  I  K  L  E  K  E  V  L  V  L  F  T  R :   V  G  C  K  M  E  P  L  W  L  *  K  F  F  Q  L  N  W  N  Q  *  E  G  K  G  N  L  Y  Q  K  *  L  H  C  L  I  S  N  M  K  T  L  S  T  S  E  D  V  V  L  M  E  H  I  D  F  *  S  M  I  T  W  K  T  T  V  F  P  *  H  F  *  :  V  G  S  K  T  E  V  N  L  H  G  R  L  G  K  E  F  R  *  E  *  Q  R  D  F  H  I  S  M  K  K  *  V  H  M  S  C  I  E  I  L  K  P  A  T  Y  S  L  M  R  I  S  H  Q  K  L  </first_frame>
            <second_frame>  L  I  L  L  A  F  F  T  F  F  L  H  *  Y  F  *  K  I  I  S  S  *  K  L  N  F  K  N  H  E  V  F  F  S  I  Y  L  M  F  *  L  I  S  R  *  F  *  R  Q  P  N  P  I  W :   W  T  N  F  P  E  F  Y  S  V  L  L  Q  *  I  E  S  C  N  S  W  I  Q  S  F  K  *  N  W  R  R  R  F  W  F  C  L  Q   : G  S  A  A  R  W  N  L  Y  G  C  K  S  S  F  S  *  I  G  I  N  E  R  G  K  G  I  C  I  R  N  S  C  I  V  *  Y  Q  T  *  K  P  C  Q  P  Q  R  M  L  C  *  W  S  T  *  T  F  S  L  *  L  H  G  K  Q  Q  S  F  P  N  T  F  R :   W  G  A  K  Q  K  *  I  Y  M  D  A  *  E  R  S  F  D  R  N  S  K  G  T  F  I  S  P  *  R  S  E  S  T  C  R  A  *  R  Y  *  N  Q  Q  H  T  P  *  *  E  F  H  T  K  N  C </second_frame>
            <third_frame>   *  F  F  L  L  F  S  H  S  F  S  T  N  I  F  K  K  L  F  L  H  K  N  *  I  S  R  I  M  K  F  S  F  P  F  I  S  C  F  S  S  S  A  D  N  F  E  G  S  Q  I  P  Y   : G  G  Q  I  S  Q  N  F  T  V  Y  S  Y  S  E  L  K  A  A  T  H  G  F  R  A  S  N  K  I  G  E  G  G  F  G  S  V  Y  K  :  G  R  L  Q  D  G  T  F  M  A  V  K  V  L  S  V  E  L  E  S  M  R  G  E  R  E  F  V  S  E  I  A  A  L  S  D  I  K  H  E  N  L  V  N  L  R  G  C  C  V  D  G  A  H  R  L  L  V  Y  D  Y  M  E  N  N  S  L  S  L  T  L  L   : G  G  E  Q  N  R  S  K  F  T  W  T  L  R  K  G  V  S  I  G  I  A  K  G  L  S  Y  L  H  E  E  V  S  P  H  V  V  H  R  D  I  K  T  S  N  I  L  L  D  E  N  F  T  P  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23740" stop="23653"/>
                    <exon start="23555" stop="23440"/>
                    <exon start="23310" stop="23094"/>
                    <exon start="22618" stop="22452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRIMKFSFPFISCFSSSADNFEGSQIPYGGQISQNFTVYSYSELKAATHGFRASNKIGEGGFGSVYKGRLQDGTFMAVKVLSVELESMRGEREFVSEIAALSDIKHENLVNLRGCCVDGAHRLLVYDYMENNSLSLTLLGGEQNRSKFTWTLRKGVSIGIAKGLSYLHEEVSPHVVHRDIKTSNILLDENFTPKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41456" PGL_stop="42970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41456" e_stop="41549"/>
            <exon e_start="42146" e_stop="42275"/>
            <exon e_start="42530" e_stop="42564"/>
            <exon e_start="42685" e_stop="42970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.895" acc_prob="0.000" e_score="0.846"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="41456" e_stop="41549" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41550" i_stop="42145" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="0.846">
            <gDNA_exon_boundary e_start="42146" e_stop="42275" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.895" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42276" i_stop="42529" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="42530" e_stop="42564" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42565" i_stop="42684" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="42685" e_stop="42970" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41456" stop="41549"/>
              <exon start="42146" stop="42275"/>
              <exon start="42530" stop="42564"/>
              <exon start="42685" stop="42970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAGCTCCCCAGAATCAGAAACTACGATAACGAA : GTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGAATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCCTTTTGTTCTTTGCCAACTACTGATTCTGATTTACTG : ATATTTACCAATTACCATTGCCGTTTGTCTAACTT : GGCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCTGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTGCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGACTATATGACAG</gDNA_template>
            <first_frame> R  F  N  T  L  A  D  I  A  T  N  S  L  V  C  M  M  I  S  A  K  A  P  Q  N  Q  K  L  R  *  R   : S  R  R  K  I  T  E  T  K  E  E  V  T  I  *  G  I  T  R  E  M  K  *  R  S  V  L  Q  T  L  L  P  F  V  L  C  Q  L  L  I  L  I  Y  * :   Y  L  P  I  T  I  A  V  C  L  T   : W  H  Q  T  Q  Q  F  Q  L  P  S  S  K  P  N  L  F  C  W  L  T  T  T  L  Q  N  R  S  R  Q  S  A  V  F  C  R  L  W  S  Y  A  S  C  K  S  *  R  K  L  A  *  F  T  W  K  G  V  P  M  M  L  *  N  K  D  V  P  S  L  A  C  E  R  R  R  P  S  N  M  T  F  *  M  C  *  S  P  V  P  L  L  R  L  Y  D   </first_frame>
            <second_frame>  A  S  I  H  *  Q  I  L  P  Q  I  L  L  F  A  *  *  F  L  Q  K  L  P  R  I  R  N  Y  D  N  E  :  V  G  E  R  S  R  R  P  R  K  R  L  P  F  E  E  S  R  G  R  *  S  S  V  P  C  C  K  H  C  C  L  L  F  F  A  N  Y  *  F  *  F  T   : D  I  Y  Q  L  P  L  P  F  V  *  L  :  G  I  K  P  N  S  S  N  F  L  H  P  S  L  T  C  F  V  G  *  L  P  L  C  K  I  D  L  A  N  Q  L  Y  S  V  D  Y  G  H  M  L  P  A  K  A  D  E  S  W  R  D  L  H  G  K  V  C  R  *  C  C  E  I  K  M  C  H  H  *  L  A  K  D  E  G  R  Q  I  *  L  S  E  C  A  D  H  Q  C  H  Y  *  D  Y  M  T  </second_frame>
            <third_frame>   L  Q  Y  I  S  R  Y  C  H  K  F  S  C  L  H  D  D  F  C  K  S  S  P  E  S  E  T  T  I  T  K :   *  E  K  D  H  G  D  Q  G  R  G  Y  H  L  R  N  H  E  G  D  E  V  A  F  R  V  A  N  I  V  A  F  C  S  L  P  T  T  D  S  D  L  L  :  I  F  T  N  Y  H  C  R  L  S  N  L :   A  S  N  P  T  V  P  T  S  F  I  Q  A  *  P  V  L  L  V  D  Y  H  F  A  K  *  I  S  P  I  S  C  I  L  S  T  M  V  I  C  F  L  Q  K  L  T  K  A  G  V  I  Y  M  E  R  C  A  D  D  V  V  K  *  R  C  A  I  T  S  L  R  K  T  K  A  V  K  Y  D  F  L  N  V  L  I  T  S  A  I  I  K  T  I  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42150" stop="42275"/>
                    <exon start="42530" stop="42564"/>
                    <exon start="42685" stop="42727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKDHGDQGRGYHLRNHEGDEVAFRVANIVAFCSLPTTDSDLLIFTNYHCRLSNLASNPTVPTSFIQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47847" PGL_stop="47210"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47847" e_stop="47210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="47847" e_stop="47210" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47847" stop="47210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATGAAAAAAGTAGGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCAGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTTTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTAGAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTAGAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCAGAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTCAA</gDNA_template>
            <first_frame> I  N  E  K  S  R  V  Q  F  D  D  R  *  E  N  D  *  *  F  C  Q  L  G  F  K  Y  F  S  L  S  S  S  R  K  N  *  I  Y  F  L  I  I  Y  L  K  Q  R  V  S  L  *  Q  Y  N  I  T  M  S  H  A  F  S  S  K  I  C  K  Y  D  V  F  L  S  F  R  G  E  D  T  R  R  T  F  V  S  H  L  Y  K  A  L  E  Q  S  G  I  R  I  F  K  D  D  E  R  L  E  R  G  K  P  I  F  D  E  L  L  K  A  I  E  E  S  K  I  A  I  V  I  F  S  K  S  Y  A  S  S  R  W  C  L  E  E  L  A  H  I  I  K  C  R  N  E  L  E  L  I  V  I  P  V  F  Y  D  V  T  P  S  D  V  R  H  Q  N  P  P  F  A  D  S  F  L  Q  Y  M  K  D  D  M  E  K  V  Q  R  W  R  A  A  F  V  E  A  G  K  I  S  G  Y  H  L  L  N  F   </first_frame>
            <second_frame>  L  M  K  K  V  G  F  N  L  M  T  D  R  K  M  I  D  S  F  V  S  *  A  S  N  I  S  H  Y  Q  V  A  E  K  I  E  Y  I  F  S  S  Y  T  *  S  R  E  L  V  F  S  N  I  I  *  Q  C  L  M  L  F  L  R  K  F  A  S  T  M  C  F  *  V  L  E  E  K  I  H  V  E  H  L  *  V  I  Y  I  K  P  W  N  K  V  E  S  A  F  L  K  M  M  S  D  *  K  G  G  N  Q  F  L  M  N  F  *  K  P  *  K  S  L  K  L  L  *  *  Y  F  R  K  A  M  H  R  R  D  G  A  *  R  S  L  H  T  S  *  S  V  E  T  N  W  S  *  *  *  F  Q  F  S  M  M  *  L  H  Q  M  C  A  I  K  I  P  L  L  L  I  H  F  Y  N  T  *  K  M  I  W  R  R  F  R  D  G  G  L  H  L  W  R  L  G  K  Y  Q  A  I  I  Y  L  I  S  </second_frame>
            <third_frame>   *  *  K  K  *  G  S  I  *  *  Q  I  G  K  *  L  I  V  L  S  V  R  L  Q  I  F  L  I  I  K  *  Q  K  K  L  N  I  F  S  H  H  I  P  K  A  E  S  *  S  L  A  I  *  Y  N  N  V  S  C  F  F  F  E  N  L  Q  V  R  C  V  F  E  F  *  R  R  R  Y  T  *  N  I  C  E  S  S  I  *  S  P  G  T  K  W  N  P  H  F  *  R  *  *  A  I  R  K  G  E  T  N  F  *  *  T  F  K  S  H  R  R  V  *  N  C  Y  S  D  I  F  E  K  L  C  I  V  E  M  V  L  R  G  A  C  T  H  H  K  V  *  K  R  I  G  A  N  S  D  S  S  F  L  *  C  N  S  I  R  C  A  P  S  K  S  P  F  C  *  F  I  F  T  I  H  E  R  *  Y  G  E  G  S  E  M  E  G  C  I  C  G  G  W  E  N  I  R  L  S  F  T  *  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47694" stop="47212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYNITMSHAFSSKICKYDVFLSFRGEDTRRTFVSHLYKALEQSGIRIFKDDERLERGKPIFDELLKAIEESKIAIVIFSKSYASSRWCLEELAHIIKCRNELELIVIPVFYDVTPSDVRHQNPPFADSFLQYMKDDMEKVQRWRAAFVEAGKISGYHLLNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="55964" PGL_stop="66776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55964" e_stop="56775"/>
            <exon e_start="59234" e_stop="59732"/>
            <exon e_start="60683" e_stop="61089"/>
            <exon e_start="61826" e_stop="61869"/>
            <exon e_start="66471" e_stop="66515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.218" e_score="0.943"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.614"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="55964" e_stop="56775" e_length="812"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="56776" i_stop="59233" i_length="2458"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="59234" e_stop="59732" e_length="499"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="59733" i_stop="60682" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="60683" e_stop="61089" e_length="407"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.218">
            <gDNA_intron_boundary i_start="61090" i_stop="61825" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="0.614">
            <gDNA_exon_boundary e_start="61826" e_stop="61869" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61870" i_stop="66470" i_length="4601"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="66471" e_stop="66515" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55964" stop="56775"/>
              <exon start="59234" stop="59732"/>
              <exon start="60683" stop="61089"/>
              <exon start="61826" stop="61869"/>
              <exon start="66471" stop="66515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG : CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG : TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTG : ATAAAAGTTTAATATTAAAGTAGAGAAAAATATAAAAGGACAAT : AAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAG</gDNA_template>
            <first_frame> P  T  P  P  H  H  P  T  L  Q  P  H  Y  L  H  H  H  H  Q  D  S  S  F  H  F  L  H  N  H  L  F  N  F  F  T  I  Y  I  L  F  N  L  I  V  I  F  S  S  V  L  F  I  R  N  P  I  S  F  F  L  H  F  S  T  V  S  R  H  N  L  R  K  G  A  K  G  C  *  N  F  V  Y  F  H  E  W  F  D  S  K  F  G  S  F  R  F  L  I  W  V  F  L  V  L  G  E  K  F  D  F  F  W  L  K  M  G  N  M  G  S  S  G  V  N  G  R  R  R  S  S  S  R  R  S  H  P  P  P  S  P  Q  P  Q  P  P  Q  P  E  I  N  A  N  R  Y  V  F  A  A  A  T  P  Y  P  T  Q  Y  P  N  P  N  A  P  P  Y  Y  Q  Y  P  G  Y  Y  P  P  P  P  A  A  M  P  V  P  L  P  A  S  Y  D  H  H  H  R  M  D  P  G  H  A  N  W  V  N  G  R  Y  P  C  G  P  M  M  P  P  P  A  P  Y  V  E  H  Q  K  A  V  T  I  R  N  D  V  N  L  K  K  E  T  L  R  I  E  P  D  E  A  N  P  G  K  Y  L  V  A  F  T  F  D  A  T  V  P  G  S :   M  T  V  I  F  F  A  K  E  G  E  D  C  C  L  T  P  M  K  E  S  L  L  P  P  V  T  F  E  F  Q  K  G  L  A  Q  K  F  R  Q  P  S  G  T  G  I  D  F  S  M  F  E  E  A  E  L  S  K  D  S  E  A  D  V  Y  P  L  A  V  K  A  E  A  T  L  D  N  P  S  E  S  E  D  G  S  A  A  S  G  S  T  N  S  Q  I  T  Q  A  V  F  E  K  D  K  G  E  Y  H  V  R  A  V  K  Q  I  L  W  V  N  D  M  R  Y  E  L  Q  E  I  F  G  I  G  N  S  V  E  S  D  F  D  G  N  D  P  G  K  E  C  V  I  C  L  S  E  P  R  D  T  T  V  L  P  C  R  H  M  :  C  M  C  S  G  C  A  K  V  L  R  F  Q  T  N  R  C  P  I  C  R  Q  P  V  E  R  L  L  E  I  K  V  S  E  G  A  A  E  E  *  K  *  E  E  L  P  *  S  T  L  V  *  I  S  V  F  L  F  L  D  L  L  V  F  L  L  Y  P  S  P  L  E  *  N  N  P  T  A  E  S  L  L  V  I  V  C  Q  S  Y  K  W  I  I  E  T  C  C  *  A  K  P  P  F  L  L  F  F  F  L  L  K  S  V  F  E  F  H  A  F  F  *  R  S  C  Y  N  Y  T  *  *  I  F  C  L  L  * :   *  K  F  N  I  K  V  E  K  N  I  K  G  Q   : *  E  S  D  M  G  S  G  H  T  A  F  G  E  K  </first_frame>
            <second_frame>  P  P  H  P  T  T  L  L  S  N  P  I  I  F  I  I  I  I  K  I  P  L  S  T  F  S  I  I  I  S  S  I  F  L  Q  Y  I  S  C  L  I  S  L  L  S  F  L  L  C  C  L  F  E  T  P  F  R  F  F  F  T  F  L  L  F  H  V  I  I  *  E  K  G  R  K  G  V  E  I  L  F  I  F  M  N  G  L  I  Q  S  L  G  V  F  D  F  *  F  G  F  F  W  F  *  V  K  S  L  I  F  F  G  *  K  W  V  I  W  E  V  V  V  *  T  A  G  D  G  V  V  A  G  G  A  T  H  R  R  L  H  N  H  N  H  R  S  R  R  *  T  R  T  G  M  C  L  R  R  R  R  L  I  L  L  N  T  Q  T  L  M  L  R  R  I  I  N  T  R  V  T  I  L  H  R  R  R  R  C  R  C  R  Y  Q  L  R  M  I  I  T  I  G  W  T  L  V  M  L  I  G  L  T  G  G  T  R  V  D  R  *  C  L  H  Q  L  H  M  W  S  I  K  K  L  *  Q  *  G  M  M  L  T  *  R  R  R  L  *  G  L  S  L  M  K  L  I  L  A  S  I  L  W  P  S  L  L  M  P  Q  F  L  G   : A  *  L  S  F  S  L  Q  K  K  V  K  I  V  V  *  L  P  *  R  K  A  C  F  H  Q  *  L  L  S  F  K  K  V  *  L  R  N  L  G  N  R  L  V  L  A  L  I  F  Q  C  L  K  R  Q  N  C  P  K  I  V  R  Q  M  C  I  H  L  Q  S  R  R  R  Q  H  *  I  T  Q  V  N  Q  R  M  E  V  Q  H  Q  D  P  L  I  H  R  S  L  K  Q  F  L  R  R  T  K  V  S  T  M  L  G  R  *  S  R  S  C  G  S  M  T  *  G  M  N  C  K  R  F  L  G  L  V  I  Q  L  K  V  T  S  M  E  M  I  P  E  K  N  V  *  F  A  S  L  N  L  G  I  P  L  Y  F  H  V  G  T  C :   V  C  V  A  D  V  Q  R  F  *  G  S  R  R  I  A  V  P  S  V  D  S  Q  L  N  A  S  W  R  S  R  S  A  K  A  Q  L  K  S  K  N  R  K  S  C  H  N  P  L  L  Y  K  Y  Q  Y  F  S  F  L  T  F  W  F  S  F  S  I  H  P  P  *  S  R  I  I  Q  Q  L  K  V  S  *  L  *  F  A  S  P  T  N  G  S  S  R  H  A  V  E  L  S  P  L  F  Y  F  F  F  S  F  *  R  V  F  L  N  S  M  H  F  F  K  E  V  V  I  T  I  P  S  K  Y  S  V  C  F   : D  K  S  L  I  L  K  *  R  K  I  *  K  D  N  :  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K </second_frame>
            <third_frame>   H  P  T  P  P  P  Y  S  P  T  P  L  S  S  S  S  S  S  R  F  L  F  P  L  S  P  *  S  S  L  Q  F  F  Y  N  I  Y  L  V  *  S  H  C  Y  L  F  F  C  A  V  Y  S  K  P  H  F  V  F  S  S  L  F  Y  C  F  T  S  *  F  E  K  R  G  E  R  V  L  K  F  C  L  F  S  *  M  V  *  F  K  V  W  E  F  S  I  F  D  L  G  F  F  G  F  R  *  K  V  *  F  F  L  V  K  N  G  *  Y  G  K  *  W  C  E  R  P  A  T  E  *  *  P  E  E  P  P  T  A  V  S  T  T  T  T  T  A  A  G  D  K  R  E  Q  V  C  V  C  G  G  D  A  L  S  Y  S  I  P  K  P  *  C  S  A  V  L  S  I  P  G  L  L  S  S  T  A  G  G  D  A  G  A  V  T  S  F  V  *  S  S  P  *  D  G  P  W  S  C  *  L  G  *  R  A  V  P  V  W  T  D  D  A  S  T  S  S  I  C  G  A  S  K  S  C  N  N  K  E  *  C  *  L  E  E  G  D  S  K  D  *  A  *  *  S  *  S  W  Q  V  S  C  G  L  H  F  *  C  H  S  S  W  E  :  H  D  C  H  F  L  C  K  R  R  *  R  L  L  F  D  S  H  E  G  K  L  A  S  T  S  N  F  *  V  S  K  R  F  S  S  E  I  *  A  T  V  W  Y  W  H  *  F  F  N  V  *  R  G  R  I  V  Q  R  *  *  G  R  C  V  S  T  C  S  Q  G  G  G  N  I  R  *  P  K  *  I  R  G  W  K  C  S  I  R  I  H  *  F  T  D  H  S  S  S  F  *  E  G  Q  R  *  V  P  C  *  G  G  E  A  D  P  V  G  Q  *  H  E  V  *  I  A  R  D  F  W  D  W  *  F  S  *  K  *  L  R  W  K  *  S  R  K  R  M  C  D  L  P  L  *  T  S  G  Y  H  C  T  S  M  S  A  H   : V  Y  V  *  R  M  C  K  G  F  E  V  P  D  E  S  L  S  H  L  S  T  A  S  *  T  P  P  G  D  Q  G  Q  R  R  R  S  *  R  V  K  I  G  R  V  A  I  I  H  S  C  I  N  I  S  I  S  L  S  *  P  F  G  F  P  S  L  S  I  P  P  R  V  E  *  S  N  S  *  K  S  L  S  Y  S  L  P  V  L  Q  M  D  H  R  D  M  L  L  S  *  A  P  F  F  T  F  F  F  P  F  K  E  C  F  *  I  P  C  I  F  L  K  K  L  L  *  L  Y  L  V  N  I  L  F  A  L  :  I  K  V  *  Y  *  S  R  E  K  Y  K  R  T  I :   R  I  R  H  G  I  W  S  Y  S  L  R  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56198" stop="56775"/>
                    <exon start="59234" stop="59732"/>
                    <exon start="60683" stop="60802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFVYFHEWFDSKFGSFRFLIWVFLVLGEKFDFFWLKMGNMGSSGVNGRRRSSSRRSHPPPSPQPQPPQPEINANRYVFAAATPYPTQYPNPNAPPYYQYPGYYPPPPAAMPVPLPASYDHHHRMDPGHANWVNGRYPCGPMMPPPAPYVEHQKAVTIRNDVNLKKETLRIEPDEANPGKYLVAFTFDATVPGSMTVIFFAKEGEDCCLTPMKESLLPPVTFEFQKGLAQKFRQPSGTGIDFSMFEEAELSKDSEADVYPLAVKAEATLDNPSESEDGSAASGSTNSQITQAVFEKDKGEYHVRAVKQILWVNDMRYELQEIFGIGNSVESDFDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVSEGAAEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55964" stop="56197"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPPHHPTLQPHYLHHHHQDSSFHFLHNHLFNFFTIYILFNLIVIFSSVLFIRNPISFFLHFSTVSRHNLRKGAKGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66128" e_stop="66776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="66128" e_stop="66776" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66128" stop="66776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  K  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  K  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  Q  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66129" stop="66776"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPKTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="66787" PGL_stop="67594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66787" e_stop="67594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="66787" e_stop="67594" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66787" stop="67594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGACTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  T  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  L  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66789" stop="67592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRLMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="72269" PGL_stop="78318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72269" e_stop="72550"/>
            <exon e_start="73566" e_stop="74057"/>
            <exon e_start="75057" e_stop="75228"/>
            <exon e_start="76234" e_stop="76532"/>
            <exon e_start="76852" e_stop="76924"/>
            <exon e_start="76995" e_stop="77085"/>
            <exon e_start="77232" e_stop="77311"/>
            <exon e_start="77725" e_stop="78318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.849" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.363" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.970" e_score="0.973"/>
          <exon-intron don_prob="0.963" acc_prob="0.764" e_score="0.989"/>
          <exon-intron don_prob="0.969" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72269" e_stop="72550" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="72551" i_stop="73565" i_length="1015"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="73566" e_stop="74057" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.849">
            <gDNA_intron_boundary i_start="74058" i_stop="75056" i_length="999"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75057" e_stop="75228" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.363">
            <gDNA_intron_boundary i_start="75229" i_stop="76233" i_length="1005"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76234" e_stop="76532" e_length="299"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76533" i_stop="76851" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="76852" e_stop="76924" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.631" acc_prob="0.970">
            <gDNA_intron_boundary i_start="76925" i_stop="76994" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="76995" e_stop="77085" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.764">
            <gDNA_intron_boundary i_start="77086" i_stop="77231" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77232" e_stop="77311" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.849">
            <gDNA_intron_boundary i_start="77312" i_stop="77724" i_length="413"/>
          </intron>
          <exon e_serial="8" e_score="0.931">
            <gDNA_exon_boundary e_start="77725" e_stop="78318" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72269" stop="72550"/>
              <exon start="73566" stop="74057"/>
              <exon start="75057" stop="75228"/>
              <exon start="76234" stop="76532"/>
              <exon start="76852" stop="76924"/>
              <exon start="76995" stop="77085"/>
              <exon start="77232" stop="77311"/>
              <exon start="77725" stop="78318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG : GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT : AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG : TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG : GGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTG : GTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG : TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG : CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGGTTCAGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</gDNA_template>
            <first_frame> Q  Y  I  T  T  T  I  L  F  V  T  P  H  Y  F  L  V  S  V  F  F  S  Q  S  L  *  L  L  F  M  G  I  F  L  Y  F  Q  *  F  N  T  Q  Y  F  L  *  G  F  S  F  F  F  Y  K  P  I  V  S  I  K  M  E  T  S  D  Q  R  S  L  A  E  E  D  G  K  N  C  T  N  N  L  N  S  R  V  D  P  P  P  L  L  V  E  K  :  V  G  E  S  S  E  I  V  E  E  L  Q  L  C  E  L  Q  T  K  Q  L  P  L  E  V  P  E  R  T  I  D  G  Q  T  E  D  F  V  R  I  D  M  S  T  S  P  V  Q  T  P  K  R  V  I  F  S  P  S  P  S  P  N  H  V  R  L  N  E  S  P  S  P  S  L  P  W  A  K  S  S  I  K  S  L  L  P  K  I  S  F  K  L  R  N  K  T  S  D  I  E  K  A  A  M  L  A  L  G  V  S  P  L  P  Q  D  K  P  S  I  L  R  T  L  S  I  K  R  I  F  N  S  K  M  N  R  T  S  S  L  P  I  T  P  I  E  H  S  N  P  E  S  T  H  G  D  Y  R  D  A  T  F  Y  S  V  :  K  A  G  V  H  P  I  L  R  S  H  S  V  P  T  L  I  K  D  E  S  L  K  Q  M  D  C  V  G  N  V  Y  R  V  V  P  S  T  P  L  V  P  R  H  D  D  T  S  S  N  A  T  Q  T  I  G  A   : V  L  W  F  S  *  K  C  *  F  W  W  R  H  H  S  R  R  G  C  L  Q  N  L  L  H  R  T  W  G  G  F  G  N  F  E  D  G  V  *  L  *  R  R  T  S  L  S  S  S  I  M  C  C  K  M  V  *  H  K  R  Q  Q  D  L  *  C  L  *  *  R  G  S  E  L  T  C  H  S  F  A  D  S  K  Y  Y  S  *  R  K  W  I  P  S  *  L  C  P  I  Q  :  G  L  A  G  R  S  C  S  C  P  C  Q  H  A  C  L  L  L  F  S  G  A  A  F   : G  Y  Q  N  G  I  R  R  D  R  Y  I  S  A  L  F  M  H  L  G  S  P  C  I  H  D  S  N  N  Y  G :   A  K  A  I  C  L  G  L  C  C  Q  S  V  C  L  G  G  S  V  C  S  C  V  L  L  T   : A  S  S  A  G  S  S  S  C  S  S  C  H  L  C  G  F  W  R  C  N  V  W  D  F  F  S  S  *  A  S  E  M  E  E  *  M  E  L  L  V  K  *  A  T  *  F  S  R  R  G  T  A  K  S  I  I  R  S  Y  S  Y  A  S  G  R  K  S  N  S  S  S  *  S  W  Y  F  W  S  C  Q  W  K  L  I  Q  D  K  H  N  L  F  I  S  R  N  Q  R  K  T  L  V  S  V  S  C  K  Q  N  Y  C  S  V  *  L  V  L  A  S  H  N  C  T  V  L  S  L  Y  Q  S  S  R  S  N  F  R  I  L  N  M  N  T  R  L  E  M  N  S  T  V  G  C  R  F  R  N  G  V  A  R  K  R  R  V  V  H  F  S  S  R  W  A  V  H  E  R  K  L  K  *  C  K  Y  H  N  V  T  R  I  S  S  P  V  I  K  K  S  D  </first_frame>
            <second_frame>  S  T  S  L  L  L  Y  C  L  L  H  H  I  T  F  L  S  L  F  F  S  L  K  A  C  N  F  C  S  W  V  F  F  F  T  F  S  D  S  I  P  N  I  F  F  R  V  L  V  S  F  S  I  N  P  L  F  Q  L  K  W  R  L  V  T  R  G  L  *  L  K  R  M  E  K  T  V  Q  T  I  L  I  P  E  L  I  L  L  L  F  L  L  K  R :   L  V  N  Q  V  K  L  *  R  N  Y  N  S  A  N  C  R  R  N  N  Y  L  W  K  Y  L  K  E  P  L  M  D  K  Q  K  I  L  L  G  *  T  C  P  H  H  Q  F  K  L  P  R  E  *  F  S  R  H  R  P  V  L  T  M  S  D  *  T  N  L  L  V  P  H  Y  R  G  Q  N  H  P  L  N  L  S  S  L  K  *  V  S  N  Y  E  I  R  R  V  I  L  K  K  L  Q  C  *  L  L  E  S  L  L  C  L  R  T  N  L  Q  F  *  G  L  Y  P  L  K  E  F  S  I  Q  R  *  T  E  L  H  H  C  L  *  L  Q  L  N  T  L  I  Q  N  Q  R  M  V  T  T  E  M  L  H  F  I  Q  L :   K  Q  E  C  I  P  Y  F  A  H  I  Q  C  Q  H  *  S  K  M  K  A  *  N  R  W  I  A  *  G  M  S  I  V  *  S  P  Q  L  L  S  C  Q  D  M  M  I  H  H  Q  M  Q  L  K  L  L  A  Q  :  C  Y  G  S  V  E  N  A  N  F  G  G  D  I  T  Q  E  E  A  V  C  R  I  C  F  I  E  L  G  E  D  S  E  T  L  K  M  E  C  S  C  K  G  E  L  A  L  A  H  Q  S  C  A  V  K  W  F  S  I  K  G  N  K  I  C  D  V  C  N  E  E  V  R  N  L  P  V  T  L  L  R  I  Q  S  T  I  R  R  G  N  G  S  P  A  D  S  V  R  Y  R :   V  W  Q  D  V  P  V  L  V  L  V  S  M  L  A  Y  F  C  F  L  E  Q  L  L  :  V  T  R  M  G  S  G  A  I  A  I  S  L  P  F  S  C  I  L  G  L  L  A  S  M  T  A  T  T  M   : V  Q  R  R  Y  A  W  V  Y  A  V  S  Q  F  A  L  V  V  L  F  A  H  V  F  Y  S  L  :  L  R  V  Q  A  V  L  A  V  L  L  A  T  F  A  G  F  G  G  V  M  C  G  T  S  F  L  L  E  L  L  K  W  R  S  R  W  N  Y  W  S  N  E  P  H  D  S  Q  E  G  A  Q  P  N  Q  S  S  E  V  T  P  M  P  Q  V  E  S  Q  T  R  R  A  E  A  G  T  S  G  V  V  N  G  S  *  Y  R  T  N  I  I  S  L  Y  Q  E  T  K  G  K  H  *  F  L  S  L  V  S  K  I  I  V  V  Y  S  *  S  L  Q  V  T  T  V  Q  F  *  V  Y  I  K  A  L  V  Q  T  S  E  F  *  T  *  T  R  D  L  K  *  I  Q  L  *  V  V  G  S  G  M  A  L  H  A  K  D  E  W  F  I  F  P  V  D  G  Q  C  M  K  G  N  *  N  N  V  N  T  I  T  L  Q  G  S  L  L  L  L  S  K  N  Q  I </second_frame>
            <third_frame>   V  H  H  Y  Y  Y  I  V  C  Y  T  T  L  L  S  C  L  C  F  F  L  S  K  L  V  T  F  V  H  G  Y  F  S  L  L  S  V  I  Q  Y  P  I  F  S  L  G  F  *  F  L  F  L  *  T  H  C  F  N  *  N  G  D  *  *  P  E  V  F  S  *  R  G  W  K  K  L  Y  K  Q  S  *  F  Q  S  *  S  S  S  S  S  C  *  K   : G  W  *  I  K  *  N  C  R  G  T  T  T  L  R  T  A  D  E  T  T  T  S  G  S  T  *  K  N  H  *  W  T  N  R  R  F  C  *  D  R  H  V  H  I  T  S  S  N  S  Q  E  S  D  F  L  A  I  A  Q  S  *  P  C  Q  T  K  R  I  S  *  S  L  I  T  V  G  K  I  I  H  *  I  S  P  P  *  N  K  F  Q  I  T  K  *  D  E  *  Y  *  K  S  C  N  V  S  S  W  S  L  S  F  A  S  G  Q  T  F  N  F  E  D  S  I  H  *  K  N  F  Q  F  K  D  E  Q  N  F  I  I  A  Y  N  S  N  *  T  L  *  S  R  I  N  A  W  *  L  Q  R  C  Y  I  L  F  S   : *  S  R  S  A  S  H  T  S  L  T  F  S  A  N  T  D  Q  R  *  K  P  K  T  D  G  L  R  R  E  C  L  S  C  S  P  L  N  S  S  R  A  K  T  *  *  Y  I  I  K  C  N  S  N  Y  W  R  S :   V  M  V  Q  L  K  M  L  I  L  V  E  T  S  L  K  K  R  L  S  A  E  S  A  S  S  N  L  G  R  I  R  K  L  *  R  W  S  V  A  V  K  A  N  *  P  *  L  I  N  H  V  L  *  N  G  L  A  *  K  A  T  R  F  V  M  S  V  M  K  R  F  G  T  Y  L  S  L  F  C  G  F  K  V  L  F  V  E  E  M  D  P  Q  L  T  L  S  D  T   : G  F  G  R  T  F  L  F  L  S  L  S  A  C  L  P  T  F  V  F  W  S  S  F  W :   L  P  E  W  D  P  A  R  S  L  Y  L  C  P  F  H  A  S  W  V  S  L  H  P  *  Q  Q  Q  L  W  :  C  K  G  D  M  L  G  F  M  L  S  V  S  L  P  W  W  F  C  L  L  M  C  S  T  H  C :   F  E  C  R  Q  F  *  L  F  F  L  P  P  L  R  V  L  E  V  *  C  V  G  L  L  F  F  L  S  F  *  N  G  G  V  D  G  I  I  G  Q  M  S  H  M  I  L  K  K  G  H  S  Q  I  N  H  Q  K  L  L  L  C  L  R  *  K  V  K  L  V  E  L  K  L  V  L  L  E  L  S  M  E  V  D  T  G  Q  T  *  S  L  Y  I  K  K  P  K  E  N  T  S  F  C  L  L  *  A  K  L  L  *  C  I  A  S  P  C  K  S  Q  L  Y  S  F  E  F  I  S  K  L  S  F  K  L  Q  N  S  K  H  E  H  E  T  *  N  E  F  N  C  R  L  *  V  Q  E  W  R  C  T  Q  K  T  S  G  S  F  F  Q  *  M  G  S  A  *  K  E  T  E  I  M  *  I  P  *  R  Y  K  D  L  F  S  C  Y  Q  K  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75160" stop="75228"/>
                    <exon start="76234" stop="76532"/>
                    <exon start="76852" stop="76924"/>
                    <exon start="76995" stop="77085"/>
                    <exon start="77232" stop="77311"/>
                    <exon start="77725" stop="77976"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPQLLSCQDMMIHHQMQLKLLAQCYGSVENANFGGDITQEEAVCRICFIELGEDSETLKMECSCKGELALAHQSCAVKWFSIKGNKICDVCNEEVRNLPVTLLRIQSTIRRGNGSPADSVRYRVWQDVPVLVLVSMLAYFCFLEQLLVTRMGSGAIAISLPFSCILGLLASMTATTMVQRRYAWVYAVSQFALVVLFAHVFYSLLRVQAVLAVLLATFAGFGGVMCGTSFLLELLKWRSRWNYWSNEPHDSQEGAQPNQSSEVTPMPQVESQTRRAEAGTSGVVNGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72407" stop="72550"/>
                    <exon start="73566" stop="74057"/>
                    <exon start="75057" stop="75228"/>
                    <exon start="76234" stop="76250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSFFFYKPIVSIKMETSDQRSLAEEDGKNCTNNLNSRVDPPPLLVEKVGESSEIVEELQLCELQTKQLPLEVPERTIDGQTEDFVRIDMSTSPVQTPKRVIFSPSPSPNHVRLNESPSPSLPWAKSSIKSLLPKISFKLRNKTSDIEKAAMLALGVSPLPQDKPSILRTLSIKRIFNSKMNRTSSLPITPIEHSNPESTHGDYRDATFYSVKAGVHPILRSHSVPTLIKDESLKQMDCVGNVYRVVPSTPLVPRHDDTSSNATQTIGAVLWFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78066" stop="78263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLASHNCTVLSLYQSSRSNFRILNMNTRLEMNSTVGCRFRNGVARKRRVVHFSSRWAVHERKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="79603" PGL_stop="78914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79603" e_stop="78914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="79603" e_stop="78914" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79603" stop="78914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCTGGGAAGACTCTTTCTTCGAGTTACAAGCAATAACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGTGGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGATCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAATTTTCCTATGCA</gDNA_template>
            <first_frame> H  S  L  M  N  Q  C  L  L  S  A  G  K  G  T  L  R  S  G  *  D  Q  A  L  V  K  T  N  Q  A  T  Q  I  L  Y  *  V  L  V  *  R  R  R  H  R  Y  L  G  R  L  F  L  R  V  T  S  N  N  I  T  I  I  Q  R  V  A  K  *  R  M  Q  *  V  G  S  F  S  Y  I  L  P  L  T  A  L  Q  L  V  C  S  F  L  I  S  T  *  Y  D  V  A  R  *  D  *  L  T  N  C  I  A  N  N  E  D  A  A  G  S  K  I  R  L  E  E  Q  Y  V  P  S  G  K  Y  E  M  L  N  K  N  F  *  A  D  V  L  K  *  S  I  L  S  F  E  M  R  N  F  *  F  P  P  C  *  N  S  P  S  P  S  L  F  P  S  L  F  F  S  F  L  F  F  F  L  C  R  Q  F  F  L  V  T  T  G  *  H  F  C  I  G  L  P  H  V  L  P  C  L  I  F  W  P  W  R  M  R  L  I  K  L  I  *  G  I  F  S  *  K  F  S  Y  A </first_frame>
            <second_frame>  I  H  S  *  I  S  A  Y  C  L  P  G  R  A  H  *  D  L  D  E  T  R  L  W  *  K  P  I  K  Q  L  R  F  F  I  E  Y  *  S  K  G  E  D  I  V  I  W  E  D  S  F  F  E  L  Q  A  I  T  *  Q  S  Y  N  G  L  Q  S  R  G  C  S  K  W  G  P  F  R  T  Y  Y  H  *  L  L  F  N  *  F  A  H  F  *  *  A  H  D  M  T  L  L  D  E  I  N  *  P  I  V  *  R  T  M  K  M  L  L  G  A  R  S  G  W  K  N  S  M  Y  L  A  V  S  M  K  C  L  T  R  T  S  K  L  M  C  *  N  N  R  Y  C  L  L  R  C  E  I  S  S  S  H  P  A  R  T  L  P  A  P  P  F  S  P  L  C  S  F  L  S  F  F  S  S  S  V  G  N  F  S  *  *  L  L  V  D  I  F  V  L  D  Y  L  M  F  C  P  V  *  Y  F  G  R  G  V  *  G  *  *  S  L  F  K  A  F  F  H  K  N  F  P  M   </second_frame>
            <third_frame>   F  T  H  E  S  V  L  T  V  C  R  E  G  H  I  K  I  W  M  R  P  G  F  G  E  N  Q  S  S  N  S  D  S  L  L  S  T  S  L  K  E  K  T  S  L  S  G  K  T  L  S  S  S  Y  K  Q  *  H  N  N  H  T  T  G  C  K  V  E  D  A  V  S  G  V  L  F  V  H  T  T  I  D  C  S  S  I  S  L  L  I  S  N  K  H  M  I  *  R  C  S  M  R  L  T  D  Q  L  Y  S  E  Q  *  R  C  C  W  E  Q  D  Q  V  G  R  T  V  C  T  *  R  *  V  *  N  A  *  Q  E  L  L  S  *  C  A  E  I  I  D  I  V  F  *  D  A  K  F  L  V  P  T  L  L  E  L  S  Q  P  L  P  F  P  L  F  V  L  F  F  P  F  F  L  P  L  *  A  I  F  P  S  N  Y  W  L  T  F  L  Y  W  I  T  S  C  F  A  L  S  N  I  L  A  V  A  Y  E  A  D  K  A  Y  L  R  H  F  F  I  K  I  F  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="87223" PGL_stop="85160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87223" e_stop="86853"/>
            <exon e_start="85442" e_stop="85160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="87223" e_stop="86853" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86852" i_stop="85443" i_length="1410"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="85442" e_stop="85160" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87223" stop="86853"/>
              <exon start="85442" stop="85160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAGAAGAAATTGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG : GTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTT</gDNA_template>
            <first_frame> E  E  E  E  I  G  E  K  K  S  I  S  S  F  T  K  H  L  I  *  K  Q  L  T  P  *  K  I  H  K  P  I  V  *  M  I  S  *  T  P  Y  V  E  F  L  I  G  T  D  F  F  F  F  *  F  *  F  G  E  E  *  *  I  L  G  L  V  V  I  R  C  R  L  H  R  H  R  G  I  T  A  V  T  T  H  N  H  L  V  *  R  R  I  S  K  P  Q  K  E  D  T  S  F  S  M  R  R  L  T  L  L  G  F  F  I  M  L  M  E  R  L  *  L  R :   *  L  L  L  I  S  R  I  S  R  H  M  R  S  P  K  H  H  Q  V  L  V  *  V  V  V  L  G  Q  L  Q  Q  G  S  *  V  E  T  V  V  K  H  L  V  L  L  E  E  M  V  E  V  S  L  S  V  A  *  V  V  G  L  D  H  L  G  C  Q  V  Q  V  V  L  L  V  I  Q  I  L  M  A  K  E  P  I  *  C  S  M  L  V  M  Q  F </first_frame>
            <second_frame>  K  K  K  K  L  V  K  K  S  Q  Y  H  P  S  Q  N  T  *  S  R  S  N  *  H  P  R  R  F  I  N  R  L  F  K  *  S  H  K  P  H  M  L  N  F  *  *  E  Q  I  F  F  F  F  D  F  D  L  V  K  N  D  E  F  W  D  *  *  *  F  D  V  V  F  I  G  T  G  E  *  Q  Q  *  Q  R  T  I  T  W  F  E  D  V  F  Q  N  P  R  R  K  I  Q  A  S  V  *  E  D  S  P  C  W  A  S  S  L  C  S  W  K  D  C  N  S   : G  D  S  C  S  S  Q  G  *  A  G  T  C  A  A  P  S  I  I  K  F  W  C  E  *  W  C  *  V  S  C  S  K  V  L  R  W  K  R  *  *  N  T  *  F  C  W  R  K  W  W  R  *  V  Y  Q  W  P  E  W  *  G  W  I  I  W  G  V  K  F  K  *  F  C  W  *  F  K  F  *  W  Q  R  N  L  F  S  V  Q  C  W  *  C  N   </second_frame>
            <third_frame>   R  R  R  N  W  *  K  K  V  N  I  I  L  H  K  T  L  D  L  E  A  I  D  T  L  E  D  S  *  T  D  C  L  N  D  L  I  N  P  I  C  *  I  F  D  R  N  R  F  F  F  F  L  I  L  I  W  *  R  M  M  N  S  G  I  S  S  N  S  M  S  S  S  S  A  P  G  N  N  S  S  N  N  A  Q  S  P  G  L  K  T  Y  F  K  T  P  E  G  R  Y  K  L  Q  Y  E  K  T  H  P  A  G  L  L  H  Y  A  H  G  K  T  V  T  Q  :  V  T  L  A  H  L  K  D  K  P  A  H  A  Q  P  Q  A  S  S  S  F  G  V  S  S  G  V  R  S  A  A  A  R  F  L  G  G  N  G  S  K  T  L  S  F  V  G  G  N  G  G  G  K  S  I  S  G  L  S  G  R  V  G  S  F  G  V  S  S  S  S  S  S  V  G  N  S  N  F  D  G  K  G  T  Y  L  V  F  N  V  G  D  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87047" stop="86853"/>
                    <exon start="85442" stop="85161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMMNSGISSNSMSSSSAPGNNSSNNAQSPGLKTYFKTPEGRYKLQYEKTHPAGLLHYAHGKTVTQVTLAHLKDKPAHAQPQASSSFGVSSGVRSAAARFLGGNGSKTLSFVGGNGGGKSISGLSGRVGSFGVSSSSSSVGNSNFDGKGTYLVFNVGDAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90729" PGL_stop="89907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90729" e_stop="89907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="90729" e_stop="89907" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90729" stop="89907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAATAGATC</gDNA_template>
            <first_frame> K  K  M  K  H  I  F  L  I  L  F  F  F  L  L  K  C  I  G  I  L  S  Q  A  P  A  P  A  P  G  P  P  P  P  L  N  V  T  K  I  L  E  K  A  G  Q  C  S  T  F  I  R  L  L  Q  N  T  Q  Q  L  N  E  I  T  S  Q  L  N  N  S  N  N  G  I  T  M  F  V  P  T  D  N  A  F  L  N  M  K  A  G  T  L  N  S  F  N  D  Q  Q  K  A  E  L  I  Q  F  H  I  L  P  T  Y  Y  S  L  T  Q  F  Q  T  A  S  N  P  L  R  T  Q  A  G  G  T  T  D  R  E  F  P  I  N  I  T  T  T  G  S  S  V  N  I  T  T  G  I  V  N  A  S  I  S  N  T  I  Y  T  D  N  Q  L  A  I  Y  Q  V  D  N  V  L  L  P  L  Q  F  F  V  P  P  A  P  A  P  A  P  T  P  I  T  R  K  R  K  A  G  S  S  D  S  S  S  K  Q  D  A  S  S  A  T  S  L  L  Q  E  M  Y  N  G  M  I  F  I  F  L  F  S  T  A  F  F  S  S  L  *  V  *  *  S  C  *  Y  L  C  V  C  M  L  V  I  L  Y  L  Y  F  I  E  N  E  F  *  V  F  S  R  I  D  </first_frame>
            <second_frame>  K  K  *  N  T  F  S  *  Y  C  S  F  S  C  *  N  A  L  A  F  C  H  K  L  Q  L  R  L  Q  V  H  H  L  H  *  T  *  Q  R  Y  S  K  K  Q  V  N  V  Q  R  S  Y  V  Y  Y  K  T  H  N  N  S  M  K  S  P  H  N  S  T  I  P  T  M  E  S  Q  C  L  C  Q  Q  I  M  H  F  *  T  *  K  Q  A  R  *  I  R  L  T  I  N  K  K  L  N  L  S  N  S  I  S  F  L  H  T  I  H  S  L  N  S  K  L  L  V  T  L  *  E  H  K  L  E  E  Q  R  I  E  S  S  R  *  I  *  Q  Q  L  E  V  Q  L  T  L  Q  Q  E  L  *  M  Q  V  Y  Q  I  Q  Y  I  L  I  T  N  W  L  Y  I  K  *  T  T  F  F  F  R  Y  N  S  L  F  L  Q  H  Q  H  Q  H  Q  H  L  *  R  V  K  G  K  Q  D  P  L  T  L  H  Q  N  K  M  L  P  L  L  L  L  C  F  K  K  C  T  M  G  *  F  S  F  S  C  F  L  L  H  F  F  R  V  Y  K  Y  D  D  H  V  S  I  C  V  Y  V  C  L  *  F  F  T  Y  I  S  L  K  M  N  F  E  C  F  Q  E  *  I </second_frame>
            <third_frame>   K  N  E  T  H  F  L  D  I  V  L  F  L  V  E  M  H  W  H  F  V  T  S  S  S  S  G  S  R  S  T  T  S  I  K  R  D  K  D  T  R  K  S  R  S  M  F  N  V  H  T  S  T  T  K  H  T  T  T  Q  *  N  H  L  T  T  Q  Q  F  Q  Q  W  N  H  N  V  C  A  N  R  *  C  I  F  K  H  E  S  R  H  V  E  F  V  *  R  S  T  K  S  *  T  Y  P  I  P  Y  P  S  Y  I  L  F  T  H  S  I  P  N  C  *  *  P  F  K  N  T  S  W  R  N  N  G  *  R  V  P  D  K  Y  N  N  N  W  K  F  S  *  H  Y  N  R  N  C  E  C  K  Y  I  K  Y  N  I  Y  *  *  P  I  G  Y  I  S  S  R  Q  R  S  S  S  V  T  I  L  C  S  S  S  T  S  T  S  T  N  T  Y  N  A  *  K  E  S  R  I  L  *  L  F  I  K  T  R  C  F  L  C  Y  F  S  A  S  R  N  V  Q  W  D  D  F  H  F  L  V  F  Y  C  I  F  F  E  F  I  S  M  M  I  M  L  V  F  V  C  M  Y  A  C  D  S  L  P  I  F  H  *  K  *  I  L  S  V  F  K  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90729" stop="90004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMKHIFLILFFFLLKCIGILSQAPAPAPGPPPPLNVTKILEKAGQCSTFIRLLQNTQQLNEITSQLNNSNNGITMFVPTDNAFLNMKAGTLNSFNDQQKAELIQFHILPTYYSLTQFQTASNPLRTQAGGTTDREFPINITTTGSSVNITTGIVNASISNTIYTDNQLAIYQVDNVLLPLQFFVPPAPAPAPTPITRKRKAGSSDSSSKQDASSATSLLQEMYNGMIFIFLFSTAFFSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="102644" PGL_stop="97081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102644" e_stop="102487"/>
            <exon e_start="101239" e_stop="101074"/>
            <exon e_start="100540" e_stop="100339"/>
            <exon e_start="100250" e_stop="100090"/>
            <exon e_start="99966" e_stop="99873"/>
            <exon e_start="99454" e_stop="99242"/>
            <exon e_start="99087" e_stop="99007"/>
            <exon e_start="98368" e_stop="98150"/>
            <exon e_start="97905" e_stop="97453"/>
            <exon e_start="97099" e_stop="97081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102644" e_stop="102487" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102486" i_stop="101240" i_length="1247"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101239" e_stop="101074" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101073" i_stop="100541" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100540" e_stop="100339" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="100338" i_stop="100251" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100250" e_stop="100090" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.958">
            <gDNA_intron_boundary i_start="100089" i_stop="99967" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99966" e_stop="99873" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.636" acc_prob="0.828">
            <gDNA_intron_boundary i_start="99872" i_stop="99455" i_length="418"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99454" e_stop="99242" e_length="213"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99241" i_stop="99088" i_length="154"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99087" e_stop="99007" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="99006" i_stop="98369" i_length="638"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98368" e_stop="98150" e_length="219"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98149" i_stop="97906" i_length="244"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="97905" e_stop="97453" e_length="453"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97452" i_stop="97100" i_length="353"/>
          </intron>
          <exon e_serial="10" e_score="0.737">
            <gDNA_exon_boundary e_start="97099" e_stop="97081" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102644" stop="102487"/>
              <exon start="101239" stop="101074"/>
              <exon start="100540" stop="100339"/>
              <exon start="100250" stop="100090"/>
              <exon start="99966" stop="99873"/>
              <exon start="99454" stop="99242"/>
              <exon start="99087" stop="99007"/>
              <exon start="98368" stop="98150"/>
              <exon start="97905" stop="97581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97669" stop="97453"/>
              <exon start="97099" stop="97081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340697" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAG : ACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAG : ATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAG : GCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACG : GCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGC : GCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG : AGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG : GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG : GTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTAA : ATAACAAGGACAAAAATAA</gDNA_template>
            <first_frame> S  I  G  E  F  A  K  L  N  D  G  A  I  D  E  D  M  E  L  *  S  C  G  M  E  G  F  L  V  F  S  I  D  T  *  L  Y  I  R  L  P  T  L  F  P  S  T  P  C  I  C  F  R :   R  Q  T  W  *  C  C  C  I  V  *  E  S  C  T  K  C  K  S  *  E  I  Q  *  G  T  *  *  S  K  F  S  H  R  G  R  P  N  T  F  R  G  V  L  A  P  C  I  S  P  S  S  V  V  Q  :  I  *  G  I  G  K  K  L  Q  K  V  S  G  D  E  T  K  R  L  S  C  R  E  G  A  F  S  D  A  P  S  *  E  C  S  *  F  S  Y  Q  P  V  G  H  G  *  H  *  K  S  V  G  V  Y  *  *  S  R  T  S  F  L  S  S  M  L  Q   : G  Q  T  P  *  G  E  A  I  A  S  R  *  R  L  F  R  C  H  I  R  G  R  I  Y  T  *  R  G  *  G  *  S  G  G  F  T  S  T  R  P  C  L  L  L  S  G  *  S  *  C  I  L  T  :  A  L  P  K  R  S  S  F  R  P  R  A  R  G  I  E  E  S  L  F  W  L  E  K  L  T  *  K  N  *  K   : R  R  R  *  R  K  *  G  *  I  S  S  C  C  G  G  V  Q  S  S  P  G  V  G  P  Q  P  F  C  T  *  C  K  S  S  S  W  F  V  Q  S  L  G  K  A  W  K  G  E  G  C  Y  I  K  L  F  R  S  P  *  T  *  W  R  A  Y  R  C  S  S  A   : E  G  *  S  Q  A  S  N  R  R  L  G  G  S  C  C  R  F  E  R  S  S  *  K  I  S  S   : G  *  E  Y  S  *  S  A  D  E  G  *  E  I  I  K  I  K  *  T  E  G  L  V  *  D  I  G  S  V  K  D  I  I  C  I  R  D  K  K  G  I  Q  K  A  C  A  A  M  A  P  *  Q  E  R  *  Q  Q  R  R  S  *  R  K  V  S  *  N  S  S  C  I  *   : G  S  R  G  *  G  K  T  Y  T  I  *  P  R  G  R  H  *  R  H  G  F  R  D  G  W  W  R  I  Q  P  I  R  W  R  I  W  W  R  I  W  R  R  R  A  A  V  H  I  P  L  *  R  R  I  S  R  W  R  R  G  R  G  I  W  R  I  S  F  L  T  S  M  A  F  V  Y  T  P  L  M  V  A  A  *  H  K  V  Q  *  A  L  L  I  L  *  F  P  R  S  F  C  F  A  D  T  I  F  I  S  F  L  A  L  A  L  R  R  I  I  W  I  N  *  T  D  P  F  C  N  F  L  A  D  V  V  T  F  L  N  S  V  I  L  K  P  S  E  V  I  L   : N  N  K  D  K  N   </first_frame>
            <second_frame>  L  *  V  N  L  Q  S  *  M  M  E  P  L  M  K  I  W  S  F  D  L  V  A  W  R  G  F  L  F  S  A  L  I  L  N  F  I  F  A  C  Q  L  F  F  L  Q  P  L  V  S  A  L   : D  A  K  P  G  D  A  A  A  L  F  E  R  V  A  Q  N  V  K  V  K  K  Y  S  E  A  L  N  D  L  N  S  A  I  E  A  D  P  T  L  S  E  A  Y  W  H  R  A  S  L  L  R  Q  L  C  R :   Y  E  E  S  E  K  S  Y  K  K  F  L  E  M  K  P  R  D  S  A  A  E  K  E  L  S  Q  M  H  Q  A  K  S  A  L  D  S  A  T  N  L  L  D  T  D  D  I  K  K  A  L  E  Y  I  D  K  V  V  L  V  F  S  P  A  C  S  K  :  A  K  L  L  K  V  K  L  L  L  A  D  K  D  Y  S  G  V  I  S  E  A  G  F  I  L  K  E  D  E  D  N  L  E  A  L  L  L  R  G  R  A  Y  Y  Y  L  A  D  H  D  V  S  L  R :   H  Y  Q  K  G  L  R  S  D  P  E  H  G  E  L  K  K  A  Y  F  G  L  K  N  L  L  K  K  T  K  S  :  A  D  D  N  V  S  K  G  K  F  R  L  A  V  E  E  Y  K  A  A  L  A  L  D  P  N  H  S  A  H  N  V  N  L  H  L  G  L  C  K  V  L  V  K  L  G  R  G  K  D  A  I  S  S  C  S  E  A  L  E  L  D  G  E  L  I  D  A  L  V  Q  :  R  G  E  A  K  L  L  T  E  D  W  E  G  A  V  A  D  L  K  E  A  A  E  K  S  P  Q  :  D  R  N  I  R  E  V  L  M  R  A  E  R  S  L  K  L  S  K  R  K  D  W  Y  K  I  L  G  V  S  K  T  S  S  V  S  E  I  K  K  A  Y  K  K  L  A  L  Q  W  H  P  D  K  N  V  D  N  R  E  E  A  E  E  K  F  R  E  I  A  A  A  Y  E  :  V  L  G  D  E  E  K  R  T  R  Y  D  Q  G  E  D  I  E  D  M  G  S  G  M  G  G  G  G  F  N  P  F  G  G  G  F  G  G  G  F  G  G  G  G  Q  Q  Y  T  F  H  F  E  G  G  F  P  G  G  G  G  G  G  G  F  G  G  F  H  F  *  P  P  W  R  S  F  I  L  L  S  W  L  L  H  S  I  K  Y  S  R  L  F  L  Y  S  D  S  Q  E  V  F  A  L  Q  I  P  F  L  S  L  F  *  L  *  L  *  G  E  S  F  G  S  I  K  Q  I  H  F  V  T  F  *  L  M  *  L  H  S  *  I  V  L  F  *  N  Q  V  K  *  F  *  :  I  T  R  T  K  I  </second_frame>
            <third_frame>   Y  R  *  I  C  K  V  E  *  W  S  H  *  *  R  Y  G  A  L  I  L  W  H  G  G  V  S  C  F  Q  H  *  Y  L  T  L  Y  S  L  A  N  S  F  S  F  N  P  L  Y  L  L  *  :  T  P  N  L  V  M  L  L  H  C  L  R  E  L  H  K  M  *  K  L  R  N  T  V  R  H  L  M  I  *  I  Q  P  *  R  Q  T  Q  H  F  Q  R  R  I  G  T  V  H  L  S  F  V  S  C  A   : D  M  R  N  R  K  K  A  T  K  S  F  W  R  *  N  Q  E  T  Q  L  Q  R  R  S  F  L  R  C  T  K  L  R  V  L  L  I  Q  L  P  T  C  W  T  R  M  T  L  K  K  R  W  S  I  L  I  K  S  Y  *  F  S  L  Q  H  A  P  R :   P  N  S  L  R  *  S  Y  C  *  Q  I  K  I  I  Q  V  S  Y  P  R  Q  D  L  Y  L  K  R  M  R  I  I  W  R  L  Y  F  Y  E  A  V  P  T  T  I  W  L  I  M  M  Y  P  Y   : G  T  T  K  K  V  F  V  Q  T  Q  S  T  G  N  *  R  K  P  I  L  A  *  K  T  Y  L  K  K  L  K  A :   Q  T  I  T  *  V  R  V  N  F  V  L  L  W  R  S  T  K  Q  P  W  R  W  T  P  T  I  L  H  I  M  *  I  F  I  L  V  C  A  K  S  W  *  S  L  E  G  G  R  M  L  Y  Q  A  V  Q  K  P  L  N  L  M  E  S  L  S  M  L  *  C  R :   G  V  K  P  S  F  *  Q  K  I  G  R  E  L  L  Q  I  *  K  K  Q  L  K  N  L  L  R :   I  G  I  F  V  K  C  *  *  G  L  R  D  H  *  N  *  V  N  G  R  I  G  I  R  Y  W  E  C  Q  R  H  H  L  Y  Q  R  *  K  R  H  T  K  S  L  R  C  N  G  T  L  T  R  T  L  T  T  E  K  K  L  K  K  S  F  V  K  *  Q  L  H  M  R :   F  S  G  M  R  K  N  V  H  D  M  T  K  G  K  T  L  K  T  W  V  Q  G  W  V  V  E  D  S  T  H  S  V  E  D  L  V  E  D  L  A  E  E  G  S  S  T  H  S  T  L  K  E  D  F  Q  V  E  A  G  E  G  D  L  A  D  F  I  F  D  L  H  G  V  R  L  Y  S  S  H  G  C  C  I  A  *  S  T  V  G  S  S  Y  T  L  I  P  K  K  F  L  L  C  R  Y  H  F  Y  L  F  F  S  F  S  F  K  E  N  H  L  D  Q  L  N  R  S  I  L  *  L  S  S  *  C  S  Y  I  L  K  *  C  Y  S  E  T  K  *  S  D  S  K :   *  Q  G  Q  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102619" stop="102487"/>
                    <exon start="101239" stop="101074"/>
                    <exon start="100540" stop="100339"/>
                    <exon start="100250" stop="100090"/>
                    <exon start="99966" stop="99873"/>
                    <exon start="99454" stop="99242"/>
                    <exon start="99087" stop="99007"/>
                    <exon start="98368" stop="98150"/>
                    <exon start="97905" stop="97696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1476</number_coding_nucleotides>
                  <number_encoded_amino_acids>492</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMEPLMKIWSFDLVAWRGFLFSALILNFIFACQLFFLQPLVSALDAKPGDAAALFERVAQNVKVKKYSEALNDLNSAIEADPTLSEAYWHRASLLRQLCRYEESEKSYKKFLEMKPRDSAAEKELSQMHQAKSALDSATNLLDTDDIKKALEYIDKVVLVFSPACSKAKLLKVKLLLADKDYSGVISEAGFILKEDEDNLEALLLRGRAYYYLADHDVSLRHYQKGLRSDPEHGELKKAYFGLKNLLKKTKSADDNVSKGKFRLAVEEYKAALALDPNHSAHNVNLHLGLCKVLVKLGRGKDAISSCSEALELDGELIDALVQRGEAKLLTEDWEGAVADLKEAAEKSPQDRNIREVLMRAERSLKLSKRKDWYKILGVSKTSSVSEIKKAYKKLALQWHPDKNVDNREEAEEKFREIAAAYEVLGDEEKRTRYDQGEDIEDMGSGMGGGGFNPFGGGFGGGFGGGGQQYTFHFEGGFPGGGGGGGFGGFHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103826" PGL_stop="104284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103826" e_stop="104284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="103826" e_stop="104284" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103826" stop="104284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCAAATACGGAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAAGAATGAAAGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATAATTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAAATAATTTTTTAATTTCCGTTAAATAAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGACACTTTTATAACGAGGATATATCAGCTCTAAATGACAAAGTCGAGGGGTATATCAGACCCTTTCCCCTAAATTTATTTTATTCTAAAC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  Q  I  R  N  *  I  T  I  H  T  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  K  N  *  K  *  Q  I  *  I  *  K  *  F  F  N  F  R  *  I  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  D  T  F  I  T  R  I  Y  Q  L  *  M  T  K  S  R  G  I  S  D  P  F  P  *  I  Y  F  I  L  N </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  K  Y  G  I  K  L  Q  Y  T  Q  K  K  *  F  K  F  F  F  F  K  L  K  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  I  Y  T  P  K  *  F  F  K  K  I  R  S  N  K  Y  K  F  K  N  N  F  L  I  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  T  L  L  *  R  G  Y  I  S  S  K  *  Q  S  R  G  V  Y  Q  T  L  S  P  K  F  I  L  F  *   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  E  L  N  Y  N  T  H  K  K  N  S  L  N  F  F  S  L  N  *  R  M  K  E  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  K  E  S  Y  I  P  L  N  N  F  L  K  K  L  E  V  T  N  I  N  L  K  I  I  F  *  F  P  L  N  K  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  R  H  F  Y  N  E  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  P  L  N  L  F  Y  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="139474" PGL_stop="139035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139474" e_stop="139035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="139474" e_stop="139035" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139474" stop="139035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAAATTTTTTTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTCTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATGATTATAATAAAAGAAGTCACAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTAAACTTTGATAGAAAATCATATATACCCCTAAATAATTTTTTTAAAAAAAATAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGAGTATATGCGAGCCATTTTGTAACGACAGGGGTATATATGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTATAACGAGGGTATATTAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  I  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  N  F  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  Q  N  N  L  C  M  K  K  N  *  N  I  P  *  T  L  I  E  N  H  I  Y  P  *  I  I  F  L  K  K  I  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  E  Y  M  R  A  I  L  *  R  Q  G  Y  I  *  A  V  C  I  T  I  R  A  Y  M  S  H  F  Y  N  E  G  I  L  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </first_frame>
            <second_frame>  Y  C  R  *  S  N  F  F  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  D  Y  N  K  R  S  H  K  I  I  Y  V  *  K  K  I  K  I  Y  L  K  L  *  *  K  I  I  Y  T  P  K  *  F  F  *  K  K  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  S  I  C  E  P  F  C  N  D  R  G  I  Y  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  V  Y  *  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  F  F  S  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  M  I  I  I  K  E  V  T  K  *  F  M  Y  E  K  K  L  K  Y  T  L  N  F  D  R  K  S  Y  I  P  L  N  N  F  F  K  K  N  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  A  S  H  F  V  T  T  G  V  Y  M  S  R  L  Y  N  D  K  G  I  Y  E  P  L  L  *  R  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="147319" PGL_stop="145796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147319" e_stop="147041"/>
            <exon e_start="146612" e_stop="145796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="147319" e_stop="147041" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="147040" i_stop="146613" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146612" e_stop="145796" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147319" stop="147041"/>
              <exon start="146612" stop="145796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG : GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</gDNA_template>
            <first_frame> H  T  E  R  K  S  S  E  K  M  A  A  S  P  L  L  L  H  S  T  A  S  S  F  Y  N  A  E  F  P  A  Y  S  V  R  L  P  V  G  N  T  K  V  R  S  S  N  K  L  T  V  K  A  S  A  T  V  L  V  D  K  S  E  A  E  K  V  N  R  L  K  T  N  Y  L  E  K  I  V  P  L  L  K  E  E  F  S  Y  T  N  I  L  Q  :  V  P  K  V  E  K  I  V  V  N  C  G  I  G  D  A  A  Q  N  S  K  G  L  D  A  A  M  N  D  L  A  L  I  T  G  Q  R  P  V  K  T  R  A  K  N  A  I  A  T  F  K  I  R  E  G  Q  P  L  G  I  A  V  T  L  R  G  N  V  M  Y  S  F  L  D  R  L  I  N  L  G  L  P  R  T  R  D  F  Q  G  V  N  P  N  S  F  D  G  H  G  N  Y  S  I  G  F  R  E  Q  S  V  F  P  E  L  S  Y  D  A  L  G  K  P  R  G  M  D  V  C  I  T  T  T  A  E  T  D  K  E  A  H  R  L  L  A  L  M  G  M  P  F  R  E  G  S  G  G  Q  T  T  F  T  K  K  K  K  L  R  A  H  H  F  D  S  K  A  K  Q  R  S  R  R  *  G  G  S  N  L  Q  G  *  *  V  D  L  L  F  F  N  C  S  V  V  Y  Q  L  F  L  A  Y  N  L  N  R  K  I  C  N  C  T  F  T  I  W  L  V  M  S  R  I  Y  V  I  Y  V  F  F  L  *  K  N  K  N  K  N  C  F  Y  L  *  L  S  F  Y  Y  S  *  I  L  I  T  V  I  C  M  L  L  N  I  S  Y  P  L  </first_frame>
            <second_frame>  T  Q  R  E  K  A  Q  R  K  W  R  L  L  L  F  F  Y  T  P  R  P  P  L  S  T  M  L  S  F  R  R  T  P  F  D  C  R  S  E  I  P  R  S  G  R  P  I  N  *  R  *  K  L  Q  Q  Q  Y  *  W  I  K  V  K  L  K  K  L  I  V  *  K  Q  I  T  S  K  R  L  C  R  C  *  R  K  N  S  V  T  P  I  F  F  R :   F  R  R  S  K  R  L  W  *  I  V  V  *  E  M  L  H  K  I  P  R  V  W  M  Q  Q  *  M  I  W  P  *  L  Q  G  K  G  L  *  R  L  G  L  R  M  L  L  L  L  S  K  L  E  K  V  N  R  L  E  L  L  L  H  F  E  G  M  *  C  I  R  S  L  T  G  *  L  I  W  G  F  L  E  R  G  T  F  K  A  *  T  P  I  A  L  M  V  M  E  I  I  A  L  A  F  V  N  R  V  S  S  Q  S  *  V  M  M  L  L  V  S  Q  E  G  W  M  F  A  *  Q  Q  Q  L  R  Q  I  K  R  H  T  D  C  W  L  S  W  V  C  H  L  E  K  V  L  V  D  R  Q  L  L  R  K  R  K  S  L  E  L  T  I  L  T  R  R  R  S  K  G  L  G  D  E  V  D  P  I  S  R  D  N  E  L  I  C  C  F  L  T  V  L  W  F  I  S  C  F  W  R  T  I  *  I  E  K  S  V  I  A  L  L  P  S  G  W  *  C  L  E  Y  M  L  F  T  F  S  S  S  K  K  I  K  I  R  I  V  F  I  S  S  *  V  F  T  I  H  E  S  *  L  L  *  F  V  C  Y  *  I  F  P  T  R  S </second_frame>
            <third_frame>   H  R  E  K  K  L  R  E  N  G  G  F  S  S  S  S  T  L  H  G  L  L  F  L  Q  C  *  V  S  G  V  L  R  S  I  A  G  R  K  Y  Q  G  P  V  V  Q  *  I  D  G  E  S  F  S  N  S  T  S  G  *  K  *  S  *  K  S  *  S  S  E  N  K  L  P  R  K  D  C  A  V  V  E  G  R  I  Q  L  H  Q  Y  S  S   : G  S  E  G  R  K  D  C  G  K  L  W  Y  R  R  C  C  T  K  F  Q  G  F  G  C  S  N  E  *  F  G  L  N  Y  R  A  K  A  C  E  D  *  G  *  E  C  Y  C  Y  F  Q  N  *  R  R  S  T  A  W  N  C  C  Y  T  S  R  E  C  N  V  F  V  P  *  P  V  N  *  F  G  A  S  S  N  E  G  L  S  R  R  K  P  Q  *  L  *  W  S  W  K  L  *  H  W  L  S  *  T  E  C  L  P  R  V  K  L  *  C  S  W  *  A  K  R  D  G  C  L  H  N  N  N  S  *  D  R  *  R  G  T  Q  I  V  G  S  H  G  Y  A  I  *  R  R  F  W  W  T  D  N  F  Y  E  K  E  K  A  *  S  S  P  F  *  L  E  G  E  A  K  V  *  E  M  R  W  I  Q  S  P  G  I  M  S  *  F  V  V  F  *  L  F  C  G  L  S  V  V  F  G  V  Q  F  E  *  K  N  L  *  L  H  F  Y  H  L  A  G  D  V  S  N  I  C  Y  L  R  F  L  P  L  K  K  *  K  *  E  L  F  L  S  L  V  K  F  L  L  F  M  N  L  D  Y  C  N  L  Y  V  I  K  Y  F  L  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147319" stop="147041"/>
                    <exon start="146612" stop="146067"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTERKSSEKMAASPLLLHSTASSFYNAEFPAYSVRLPVGNTKVRSSNKLTVKASATVLVDKSEAEKVNRLKTNYLEKIVPLLKEEFSYTNILQVPKVEKIVVNCGIGDAAQNSKGLDAAMNDLALITGQRPVKTRAKNAIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGFREQSVFPELSYDALGKPRGMDVCITTTAETDKEAHRLLALMGMPFREGSGGQTTFTKKKKLRAHHFDSKAKQRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 200168 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 11774 bytes was the average size of a spliced alignment
$ 23008 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1533 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-19 20:34:30
-->
