<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-19 20:30:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326522" ref_strand="+" ref_description="SGN-U326522        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, similar to DEFECTIVE IN ANTHER DEHISCENCE1 (Arabidopsis thaliana) GI:16215706; contains Pfam profile PF01764: Lipase | chr1:2089275-2091685 REVERSE | Aliases: F4H5.11, F4H5_11(evalue: 2e-23, score=106) genbank/nr: gi|30679836|ref|NP_849603.1| lipase (class 3) family [Arabidopsis thaliana] gi|25406940|pir||H86202 hypothetical protein [imported] - Arabidopsis thaliana gi|7523699|gb|AAF63138.1| Similar to lipases [Arabidopsis thaliana] gi|20466266|gb|AAM20450.1| lipase, putative [Arabidopsis thaliana](evalue: 2e-21, score=106)">
      <seq>aactttctaaaacattatgttaaaactaataaaaaataagttcacgtctgaaaggagtttagattgaaggttttggtacgaaatgttaaatagagatgatatcttctacacgatagaaaatatattaatataattttatagattctgattcgacactaaacatatatatatatatattaaggtggttgtgaggtagacaactgggattcgaaattatttaaagttgagcatattattattattattattatctcgaacagatgcatagatgaagacttcaaaaagaaaaaataataaacaaagacaagtaacatcatcatatttttttaaataatgaataaagtaagatgagtcatcacttatatatttgtttattaatggcatggccatatatatatatatatattatatatcttgttttggcatttctagacatacagatcttattcacatgagtccacaccgtgtgaaaactctaattccaacaacaattttttgaaattctattgaatttttgtgagtggtagctttaattggtaaaaataattagtgcgattatttttgacattgtgagcttttcaagtcaaagtcataactaaaatttagtattgtcgtacgtatcttaaaatatcagatgaaatgattatatttttttaaaaatataaaaatttgaatgacgttaaaattatgatcatatttcaatatcatttcaaattatagtcttgaatttctatataactttcacataaggaacgtaatgaatgcatagctatatatattatattaaaaatgtgatttttttaacagtttagacttttaaacgtagaacgtatttatctgtttgacagatatcatggaaaagggagaagatttgtgcttgaaaaaggcagagacatagccttagtgaacaaagcatgtgattttttgaaagatcattattgtgttcctcctaattggagacaagatgaaaataaaggtatgattagagacaaagatggacgttgggttcaacctgaacgtcctagacttgatgatcatactcatgatattcatcatcatatcaaacatttaggactttaatcttgtacattattaatatgtgttactatgtaatcttgtatggaatataatataatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="6118" stop="7863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6418" g_stop="7564" g_length="1147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1140" r_length="1140" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U326522" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1147</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6418" e_stop="7564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACGTAAGGAACGTAATGAATGCATAGCTATATATATTATATTGAAAATGTGATTTTTTTAACAGTTTAGACTTTGAAACATAGAATGTATTTATCTGTTAGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCATAGACATACCCTTAGTGAACAAAAGCATGTGATTTTTTGAAAGAACATTATTGTGTTCCTCCTTTTTTGGAGACATGAAGGAAAAAAGGTGTATGATTTAGAGACTATGATGGTTGTGGGGTACACCCTGATCTTCCTACACTTGATGAACATATTCGAGATATTTCTTCATCTAATCGAAAATTAAAGACGTCCCTCTTGTAACATAAAAATATGTGTTACTATGAAAATCTTGGTATGAAAAAAAAAAAAGGGTTA</genome_strand>
        <mrna_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAATGACGTTAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACATAAGGAACGTAATGAATGCATAGCTATATATATTATATTAAAAATGTGATTTTTTTAACAGTTTAGACTTTTAAACGTAGAACGTATTTATCTGTTTGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCAGAGACATAGCCTTAGTGAAC-AAAGCATGTGATTTTTTGAAAGATCATTATTGTGTTCCTCC-TAATTGGAGACAAGATGAAAATAAAG-GTATGA-TTAGAGACAAAGATGGACGTTGGGTTCAACCTGAACGTCCTAGACTTGATGATCATACTCATGATA-TTCATCATCATATCAAACATTTAGGACTTTAATCTTGTACATTATTAATATGTGTTACTATG-TAATCTT-GTATGGAATATAATATAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315455" ref_strand="+" ref_description="SGN-U315455        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | gluthatione reductase, chloroplast, nearly identical to SP:P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 | chr3:20240723-20244160 REVERSE | Aliases: T5N23.20(evalue: 0, score=855) genbank/nr: gi|431955|emb|CAA53925.1| glutathione reductase (NADPH) [Nicotiana tabacum] >gi|1708059|sp|P80461|GSHRP_TOBAC Glutathione reductase, chloroplast precursor (GR) (GRase) (evalue: 0, score=964)">
      <seq>caaaaaagaaaaaaaacagagaaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgatagaagggcggggaaaggtggtggatcctcatacagtggatgtggatggtaaactctactcggctaagaacatactaatttcagttgggggccgcccatttatcccagacattcctggaagcgagtatgctatagattctgatgctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacagggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttctaagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgactaatatcttgatgatgcttttctccgttattctacttttctgctgggtttgagggcgcatttgggcggtgtaattataacattgcttattaagtattgtttttgtaattataaaattagttgatatgctgcaataatagcagttaagcggattgcttaatggcttttatatattggaaatgttcattttcctaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21119" stop="13479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20819" g_stop="20408" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18889" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="638" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18804" g_stop="18526" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="917" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1094" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1095" r_stop="1148" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1149" r_stop="1297" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1298" r_stop="1361" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16973" g_stop="16803" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1362" r_stop="1532" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16713" g_stop="16579" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1533" r_stop="1667" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1668" r_stop="1756" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="14251" g_stop="13779" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1757" r_stop="2229" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2230" polyA_stop="2248"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U315455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2229</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20819" e_stop="20408"/>
          <exon e_start="19114" e_stop="18889"/>
          <exon e_start="18804" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16803"/>
          <exon e_start="16713" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</genome_strand>
        <mrna_strand>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG....................................................................................GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345579" ref_strand="+" ref_description="SGN-U345579        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tggatgtgggatattgtaactgcacaactcttttatgatgcatctaattaagtgttcaatttttggtttcttattttattctcttacaactgnagtgattgttggtgtccaaaatgattactgctccttcggctccagtttatgcgacactgtgtccttattattctgtttaaaaatgagtgacacgattctatatttggaagcatgaacttacttttttgctcttaatttgaactttgaaacttttattgccatactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="15302" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="14742" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U345579" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="14742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATG</genome_strand>
        <mrna_strand>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGNAGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAACTTTTATTGCCATACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338782" ref_strand="+" ref_description="SGN-U338782        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II reaction center W (PsbW) protein-related, similar to photosystem II reaction center W protein SP:Q41387 from (Spinacia oleracea) | chr2:13026105-13027271 REVERSE | Aliases: T6B20.8, T6B20_8(evalue: 1e-31, score=134) genbank/nr: gi|15224531|ref|NP_180615.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|30684638|ref|NP_850149.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|25354997|pir||A84710 photosystem II reaction center 6.1KD protein [imported] - Arabidopsis thaliana gi|1946362|gb|AAB63080.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|11762232|gb|AAG40394.1| At2g30570 [Arabidopsis thaliana] gi|14030715|gb|AAK53032.1| At2g30570/T6B20.8 [Arabidopsis thaliana] gi|21593002|gb|AAM64951.1| photosystem II reaction center 6.1KD protein [Arabidopsis thaliana] gi|23506075|gb|AAN28897.1| At2g30570/T6B20.8 [Arabidopsis thaliana](evalue: 8e-30, score=134)">
      <seq>taaaaattagaatttgtgatcattctctctcactaatacagaaggggcaattcatcactgcttgcaccacaacttcttcagtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcgattgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaaaggaaagggtgaatcaaagtttggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtcatactataatcaaactttaattaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="5951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23334" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="531" r_length="393" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23333" i_stop="23268" i_length="66">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.503" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23267" g_stop="23243" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="556" r_length="25" r_score="0.640"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U338782" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23334"/>
          <exon e_start="23267" e_stop="23243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAA-CCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAACAAAATTAGTGATTTTTAGAAAGGGAAGAAAGAA</genome_strand>
        <mrna_strand>TAAAAATTAGAATTTGTGATCATTCTCTCTCACTAATACAGAAGGGGCAATTCATCACTGCTTGCACCACAACTTCTTCAGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCGATTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAAGGAAAGGGTGAATCAAAGTTTGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTC---------T-T-TA--A-----TTTTTGTCATACTATAATCAAACTTTAATTAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTAT..................................................................TTTTCTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322694" ref_strand="+" ref_description="SGN-U322694        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium transporter CorA-like family protein (MRS2-2), weak similarity to SP:Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein | chr5:25823995-25826867 REVERSE | Aliases: MUB3.8, MUB3_8(evalue: 8e-92, score=214) genbank/nr: gi|30698045|ref|NP_851269.1| expressed protein [Arabidopsis thaliana] gi|10178059|dbj|BAB11423.1| contains similarity to unknown protein~emb|CAB89361.1~gene_id:MUB3.8 [Arabidopsis thaliana] gi|17529326|gb|AAL38890.1| unknown protein [Arabidopsis thaliana] gi|20465371|gb|AAM20089.1| unknown protein [Arabidopsis thaliana] gi|21536628|gb|AAM60960.1| putative magnesium transporter [Arabidopsis thaliana] gi|25360813|gb|AAN73212.1| MRS2-2 [Arabidopsis thaliana](evalue: 6e-90, score=214)">
      <seq>taatgttcttcctgttgttgaagaacttcaaagaagattgccattgccagctattagcttaggagaaggtgaagatgatgatcaatctgttgttaatgggacacgaaatgaaatgcaaaccattgaaccaactgagtttccttttgaatttcgagctttagaagtagcactagaaggagtatgcagttatcttgacactcagacacgagaactagagactgctgcttacccggctttagatgagctcacctcaaagattagtagtcgcaacctggatagagtgcgcaaattgaagagtgcaatgactaggttgactagtcgggttcaaaaagtaagggatgatcttgaacaactactcgaagatgatggtgacatggctgacctttatctctcaagaaaattagttgccggagtttcatcccccctgagtggtcaggtggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacggtaagacaatgaaaaaaacaggaacctggtgccctttacatagccaaaatgaaataatgaactgatcattgataactctaattacatagtgatactcgtgttcctttatccagctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattctttctggaattgcttctgcatccgttttcctatcaataattgcatatgctaggcacaagggtcttgttggatcttaaatcttaatacctattactcctccgatctctatatataaatataaaatacaccagacatgtcaacatgttgaaatttaatttctaaattgtaacttttagaggacgaggcagagccatgattggagataagatatgcaaaaatgttacgatacgaatttatgacctaaaacatgcttgttatgtattgatgaattcaacaatcaatatatatatatatatatatatataaaatctcacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="28989" stop="32895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29422" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29532" g_stop="29653" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="256" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30611" g_stop="30685" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30855" g_stop="31082" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="559" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31166" g_stop="31368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="762" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="792" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="912" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32269" g_stop="32611" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="913" r_stop="1255" r_length="343" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U322694" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29422"/>
          <exon e_start="29532" e_stop="29653"/>
          <exon e_start="30611" e_stop="30685"/>
          <exon e_start="30855" e_stop="31082"/>
          <exon e_start="31166" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTGGTATGCACCTACTGCTTCTTATTTCGGTGTTGAGTTGTTGGTTACTATGTGTTCTTTCTATGCAAGCAACACGATTGCTAATCATCCGTTCCTATTATTTGTGATGCAGAGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAGGTAAGATAGTAAATCGATATGTTATAAGGTCACTTTCATGTTTAGTGCAACTAACTACCTGTAAAAGAGTGTGGTAATCGTTTGAAGCTGATCAAATTGCCTAAAATTGTCTACCTAAGTAGATAAAATTTGTTTGGTTTGAAATTATCTTTGATTATTTTGCATTGAGTTGCTCTAATTACCATTAATCAATTGCCATGTCCTGCCGCTCTTGAAAGTTATATCTACTTGCTACCACCGAATGTCCAACAAGTTTCTGTTGTTCGATAAGTTGACATGTTATATATGATGGTTTCGTCATTGTTTTCTTCCAAAGCAGTGGATTAGCACCTTCCTTTTCTAATTGATTAATGTAGAACTAAGTTAACAGCGGAAGATCTATTGTGAAAACGCTATATTTAGCGTTCTCCCACTTGTCTATGGCTTGAAAGTCAGAAGGGAAGAAAAGGGAAAAAGATAATTAGTTTGTTGCAATGTTATGTTAAGCATAGACTTATAAAACAATGTTCATAGAAGAGGGAATTACAGAGTCTTTATAGGTAAGGGAAACGATCACTTCTAACTGATGGATGGATTAATGAAGTTTTATTACAAAAACTTGCTATCAGATATATTTACCTCACCGCAGAATCAGGTCGAATGTGTTGTAAGAATTATCCTAGATATAGACTTATCTACGTCAACCAAGATTGGTTTTATTTGAACAGGAGGCAACATATTAATAACGACCTTGCCTGATTGTTTTGCATAAATTTGAATTGACAAAATGTCCCTCCTCAACTGTTTGTTCATCCCAAGTACAACTAAGGAAACCATTGTTTAGTTGCTTTACTGGATAGCATTTTGGTTATGATATGTATGTGCTTGCGCACAGAGCATTTATTAGTCTCTCTTGATCAGTTTGTTTCCCAAGTACCTTTTCTTCTAATGTGTGATTTTTCTTTTACTAATTTGCAGATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAAGTATGTCTCTCTTTTTCTTCTACATGTTATATCCTGAAACATACAAGATGTTCTGGTCTATGCGTCCGTTTATGGACTAATGATATGGTGTCTAAAAGGAAAAAGATGAGTTCATCTAGAGCTGAATGTTTTGTTAATCTAATTTAATCTAAATTATGCCAATATCTAGGTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATACGCACAAATGTAATTT</genome_strand>
        <mrna_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG.............................................................................................................AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA.........................................................................................................................................................................GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316506" ref_strand="+" ref_description="SGN-U316506        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-actin capping protein alpha subunit family protein, contains Pfam profile: PF01267 F-actin capping protein alpha subunit | chr3:1598556-1601306 FORWARD | Aliases: F22F7.25(evalue: 3e-129, score=458) genbank/nr: F-actin(evalue: 2e-132, score=475)">
      <seq>aaaagagaggggaaagcgactctggtggggttatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgttaggccagcaagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctgctaggcatagtcctcagaatttctgcaatggaagctggcgatcaatatggaatattgaatttaaggatgaaattcaatctgtagaagtgagaggcgagatgcaggttggcgcacattactttgaagagggaaatgtacagctagatgcaaaacacgaatgtaaggatacaacgctaattcagtccccagatgattctgcattttccctggtcaacattattcgccaccatgagactgagtatctggcttctcttcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttacaagagacattgaaaaagaacttggaattggaaaatagaaacattgcacgtcttttgtacaagttgaacatgtatacaccattcctgatatgacaagcgggtttacttgagattgccgtctccagctatttgttgtcttctcccttttgtgttcctttgagggagggattttcactttcagttattttaccatgtttgctaatgtgtgaacttccccttaagttgttaatttggcagttggcctgagggagttgtgaagagttgtcaagtactgaatgggaagtctttcttcatggtttttaaccttggaatgactgaacaatgctggtaaagaatgataatttttagttattatagtgtacttacttttttcaaaggtcgaggcgaatataaccatcaaaatgttcaaactttgttgtaatttcatataatttgtctcttttaagattttgttggatcattacatctgtgaacctttgtttggatggttgttatatcatttaataatttatcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53129" stop="46248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52829" g_stop="52588" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="340" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="495" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49107" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="657" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48813" g_stop="48735" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="736" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48490" g_stop="48413" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="814" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47348" g_stop="47274" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="889" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47119" g_stop="47084" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="925" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46991" g_stop="46549" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1372" r_length="447" r_score="0.781"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1511" polyA_stop="1520"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U316506" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>1386</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52829" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49107"/>
          <exon e_start="48813" e_stop="48735"/>
          <exon e_start="48490" e_stop="48413"/>
          <exon e_start="47348" e_stop="47274"/>
          <exon e_start="47119" e_stop="47084"/>
          <exon e_start="46991" e_stop="46549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTGGTGTGTTGGATTATTAAAATTCTAACCCTGACTAATTTGTGCAACACTCCCTTCATAATTTCTAAATAGTTATACTTATCGTGGTGCAGAACTTGTAAACAGATACTGAAGTAATAGGTTGCTATATATAAACAAAGAATGAGGGATTCTATTGCCTATTTTCCTGTCAGCTTCACACTTGTCACTTGCGTCAAGTGATATCTTGTTATAGCACGTGTGACTTGTCAATTGGGTCAACTGATACTTCTTATAGCTTTGTCTAAAGAAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAGGTAAGTGACTATAGTTTGTTCATAAAATTCTCTTTGCTTTGTTATCGTGTCTCCTGGTCTTAAATCATAAGGGTATAGCAGTTGTTCTCTGCTGTAGATTGTACTGTTTCTTTTGTTTGTTCTTAACCAGTCTAAGGGTTAACGCTTCAAAACAGCACATAGAGACTGTAGATTGATGCCTCGTGAAAGTACTCAGAGAATGCAATGAGAGTTCAATTCTTTTGGCAATAAATCATGATAAATTTTCTCAAAAGAAATTTAAGAGCAGTCTGAGTTTAGCTATTTTTCACCTCCCTTCTGCAGTGTGAGACTCTGGTTGTTGGTACTTGTTTTCAATAAGCAAAGTCTGTTAGTTCTCAACTTCATGGTATGTATTGTTTCCAGATTACCATGTCTGGAGCAAAATTATAAGCATTACTATCCAACTCTAGCAGTGGAAGAGACTTCCGTCTATGATAGCTTTTTTCATAATTTTCTTTCATTTAACATGATTTGTCTGTAATTTATACTTTCAATGAGAGTAAAAAGGCACTAGGATGGTTAGACAACCAAGAAAATGAAAAATGATATAGCTGCTTCTGCACATCCTACTTTTTGTATCTGTGTAGAGATTGAAGGTCATATTAATATCAACACTTTGTATCTTAAGCAATCTGATTGGAAATCATATTGTAGAAGAAATAGAAGTAGCATGCCAAGAAAATAAATGGTGAGACACAACAGTTTCTGGATATCCTATATTTTGCTGGTCTATTGTTGGAAAAAGGTAAAAGCTAAAATTTTATAAAAAATAATCTTGAGTGATCTGATTAGTAATCGAACAGGGAAGAAAAGAAGTAGCATGGTCAGACAGCCAGAAAGAACAAAAAGTGAGACAACTGTTTCTGGAAATCCTATTTGCTTAACTAGTGTAAATTTGAAGGTCAAGTTAAAGGAGAAGTTATTTTCTTGAACAATCTTATTAACTCGAAGAAATAAAAGTTTGATCAAGTCTATCTTGTGATTTTGTGTATATTTTCAATGGTTCAAGTTTGAATTTACTGATTTTGTGTTGTCTTTCTTAGTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCA-TGCTAATT-TGTGAAC-TG-TCCCTTAGTTGT-CTGTTTGCC---AGTTG-GGCTGAGAGAGTT-G--T--GTATGCTGTGAAGAGTTGTAAAGTACTGATTTAGAAGTCTATCTTCATGTTTTTTAACCTTGGAATGACTGAATAATGCTGGTGAAGAATGATACTTTTTAGTTGTTATAATGTACTTACTTTTTTCAAAC</genome_strand>
        <mrna_strand>AAAAGAGAGGGGAAAGCGACTCTGGTGGGGTT-ATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGA-T------AA-AAATG-T-----T---AGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGATGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG.....................................................................................................................................................................................................................................................................................................CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG....................................................................................................................................................................................................................................................GTTGGCGCACATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACGAATGTAAGGATACAACGCTAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCAGATGATTCTGCATTTTCCCTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG..........................................................................................................................................................ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACAAGAGACATTGAAAAAGAACTTGGAATTGGAAAATAGAAACATTGCACGTC-TTTTGTACAAGTTGAACATGT----A-T--ACACCATTCCTGATATGACAAGCG-GGTT-TACTTGAGATTGCCGTCTCCAGCTATTTGTTGTCTTCTCCCTTTTGTGTTCCTTTGAGGGAGGGATTTTCACTTTCAGTTATTTTACCATGTTTGCTAATGTGTGAACTTCCCCTTAAGTTGTTAATTTGGCAGTTGGCCTGAGGGAGTTGTGAAGAGTTGTCAAGTACTGAATGGGAAGTCTTTCTTCATGGTTTTTAACCTTGGAATGACTGAACAATGCTGGTAAAGAATGATAATTTTTAGTTATTATAGTGTACTTACTTTTTTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316505" ref_strand="+" ref_description="SGN-U316505        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-actin capping protein alpha subunit family protein, contains Pfam profile: PF01267 F-actin capping protein alpha subunit | chr3:1598556-1601306 FORWARD | Aliases: F22F7.25(evalue: 4e-17, score=82.8) genbank/nr: F-actin(evalue: 2e-16, score=87)">
      <seq>aagtctctgttgccggtattttcgttccaagttactgatcgactttttactggcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttactcgagatattgaaaaagaacttcgaattggaaaatagaaacattgcatgtctttttatacaagttgaatatgtacacagtacacaccattcttgatatgacaagcgagtttatacttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="47475" stop="46500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47175" g_stop="47084" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46991" g_stop="46801" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="283" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="301"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U316505" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47175" e_stop="47084"/>
          <exon e_start="46991" e_stop="46801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</genome_strand>
        <mrna_strand>AAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316507" ref_strand="+" ref_description="SGN-U316507        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-actin capping protein alpha subunit family protein, contains Pfam profile: PF01267 F-actin capping protein alpha subunit | chr3:1598556-1601306 FORWARD | Aliases: F22F7.25(evalue: 6e-30, score=127) genbank/nr: gi|3702368|emb|CAA05054.1| alpha subunit of F-actin capping protein [Arabidopsis thaliana] >gi|11279632|pir||T51820 F-actin capping protein alpha chain [imported] - Arabidopsis thaliana (evalue: 4e-28, score=127)">
      <seq>tatcttcctctttgttattctgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatcatttagtgaggttcataaggatgagtatcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56356" stop="51227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56056" g_stop="55937" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="254" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="538" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="654" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51575" g_stop="51527" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="703" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U316507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56056" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATC</genome_strand>
        <mrna_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335710" ref_strand="+" ref_description="SGN-U335710        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttgcaatcttattaacagatattctctctccattgaattcaattcaattcaaattcgaagaagataccatcaaccccaccagagtcgctttcccctctcttttgttactagatgtagtgtgcccgtgcgaggcacggacatgtgcctgacattgttgtttgttatatcgtttaatttgataaaagataaggagaatataaagatgaaatacacatcaaagaatgtctgaagaagtctaagtcagatttgaaagctaaagagctattcactcttttcccataaagaaaaatcataaaattatcttaaagttagttcactactaaccagccaattagtgtataaaaaataagaaaccagagaagtatttggagaagccaacttcacaaatttcaacagacattgcaaaccaaagaagcatccggagcagacaacttcagaaatttcaacacaccttgcatctgccattacaaagtacgattcgaacattatcaagtgtgtaatgacacatcaaactctaattcttctagcacaagaagtacgtgatgatgaccgtcaacggatgcgtaatatatcaatatttgaagacgaaagaagaggattaatcataaagaagtaaaattgaaacaaagacagctcattctgaaacttgcaaaacaaaatctggtagtcatctatcaaacactaattgaatgccgaaaaggttgcctatagtaaggcactaataacttacccgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="52420" stop="53763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52718" g_stop="53463" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U335710" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52718" e_stop="53463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATTTTTTGCAATCTTATTAACAGATATTCT-TCTCCATTGAATTCAATTCAATTCAAATTCGAAGAAGATACCATCAACCCCACCAGAGTCGCTTTCCCCTCTCTTTTGTTACTAGATGTAGTGTGCCCGTGCGAGGCACGGACATGTGCCTGACATTGTTGTTTGTTATATCGTTTAATTTGATAAAAGATAAGGAGAATATAAAGATGAAATACACATCAAAGAATGTCTGAAGAAGTCTAAGTCAGATTTGAAAGCTAAAGAGCTATTCACTCTTTTCCCATAAAGAAAAATCATAAAATTATCTTAAAGTTAGTTCACTACTAACCAGCCAATTAGTGTATAAAAAATAAGAAACCAGAGAAGTATTTGGAGAAGCCAACTTCACAAATTTCAACAGACATTGCAAACCAAAGAAGCATCCGGAGCAGACAACTTCAGAAATTTCAACACACCTTGCATCTGCCATTACAAAGTACGATTCGAACATTATCAAGTGTGTAATGACACATCAAACTCTAATTCTTCTAGCACAAGAAGTACGTGATGATGACCGTCAACGGATGCGTAATATATCAATATTTGAAGACGAAAGAAGAGGATTAATCATAAAGAAGTAAAATTGAAACAAAGACAGCTCATTCTGAAACTTGCAAAACAAAATCTGGTAGTCATCTATCAAACACTAATTGAATGCCGAAAAGGTTGCCTATAGTAAGGCACTAATAACTTACCCGCATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGCAATCTTATTAACAGATATTCTCTCTCCATTGAATTCAATTCAATTCAAATTCGAAGAAGATACCATCAACCCCACCAGAGTCGCTTTCCCCTCTCTTTTGTTACTAGATGTAGTGTGCCCGTGCGAGGCACGGACATGTGCCTGACATTGTTGTTTGTTATATCGTTTAATTTGATAAAAGATAAGGAGAATATAAAGATGAAATACACATCAAAGAATGTCTGAAGAAGTCTAAGTCAGATTTGAAAGCTAAAGAGCTATTCACTCTTTTCCCATAAAGAAAAATCATAAAATTATCTTAAAGTTAGTTCACTACTAACCAGCCAATTAGTGTATAAAAAATAAGAAACCAGAGAAGTATTTGGAGAAGCCAACTTCACAAATTTCAACAGACATTGCAAACCAAAGAAGCATCCGGAGCAGACAACTTCAGAAATTTCAACACACCTTGCATCTGCCATTACAAAGTACGATTCGAACATTATCAAGTGTGTAATGACACATCAAACTCTAATTCTTCTAGCACAAGAAGTACGTGATGATGACCGTCAACGGATGCGTAATATATCAATATTTGAAGACGAAAGAAGAGGATTAATCATAAAGAAGTAAAATTGAAACAAAGACAGCTCATTCTGAAACTTGCAAAACAAAATCTGGTAGTCATCTATCAAACACTAATTGAATGCCGAAAAGGTTGCCTATAGTAAGGCACTAATAACTTACCCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346016" ref_strand="+" ref_description="SGN-U346016        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctcacgaaatatattctgtaatacccaaacacatttactacccatggggatccccgagtagtttaccagacaaattgagttgtgggcaacatcgaagattctcttcaccatctaggctatggaagagattactatagagatagatgaaagattgtttagtcaatgggtgtgaattatcactacacttgcaactactatgtcgtagtcgatatgaacttagtatatgtgtattttaaattgctcaaattagtgtatagagagttgagggtggtacggctgccacaccacatcttacctggggttggtgatagtttcacagattactttgactgtagtttgatatataatatctgatgcttttgttttgtgagtatcagaatgaactgtctttgtttcgattttacttccttatgattaatcctcttctttcgtctttaaatattgacatattaggcatgctttgactgtcctatcattacgtacttcttgtgctagaagatgtaacattcttcacctttttggtttgcctcctgtaacgtgaaaattttttggtagataattgaacataacaggctgtgttatccttatagatgttaaacaacagcatatcttgagcccatatgcaatattgcgaggtgctgataaagttcattattacgtacgtgtgatcatatgaataaatctgaacgtgtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="55353" stop="54057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55053" g_stop="54357" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U346016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55053" e_stop="54357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</genome_strand>
        <mrna_strand>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAAACAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAG-TTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338454" ref_strand="+" ref_description="SGN-U338454        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|8843876|dbj|BAA97402.1| mutator-like transposase [Arabidopsis thaliana] >gi|3047068|gb|AAC13582.1| similar to maize transposon MuDR (GB:M76978) [Arabidopsis thaliana] (evalue: 9e-06, score=45.4)">
      <seq>tgccatcaacggctattacttttctcatttcttgaaaatcaattatccaagcagcatatgataaaaaaagtactggattctcccattttcatcgagagacaatgtcgtcttgcttcctggattcgcaacttcaagcatataccggtacgcattaagcactgtgcacctgtgcttatgtgttcccctaacattagacttagcaggatccatgcccttataaatattcaaatagattaccttataataacatatagtattaaataaatagtattaaataatattagtatttactgtgtactaatccaagtcctattaggattagtactccttaatcctagtcctattaggattagtactccttcctatatctcctatatatatctcccatgtattcccttattaggttaacacttcaatacaatcaatattccttcatggtatcaagagccagaaaacctagatctttttttctctagttttttttctctctttagggcaccgatcgttccctctcttctcttgggcggcggcagccatgacaaccgaggtggatcctctcgatccacttccttctggcgttaaactccttctcaggcatcttcatgccctgattcccaaaaaattatcagacataaattaccctacatggaaaattaccgttcttacagcccttgaggccaattaccttctcaaatacgttgatggaagcacagaaccggcgccggcagtcatcaccgccacagacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="64933" stop="66280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65233" g_stop="65984" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U338454" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65233" e_stop="65984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAATCAG</genome_strand>
        <mrna_strand>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="67931" stop="68979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68231" g_stop="68671" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68231" e_stop="68671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCATCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTACCTCATGGAAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCTATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAAATGACAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343389" ref_strand="+" ref_description="SGN-U343389        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | prenylated rab acceptor (PRA1) family protein, contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) | chr3:4495026-4495963 REVERSE | Aliases: MMM17.14(evalue: 1e-26, score=117) genbank/nr: gi|21617895|gb|AAM66945.1| unknown [Arabidopsis thaliana](evalue: 4e-25, score=118)">
      <seq>tttgaacgtgaatcacagtgcaaccctaattgaataatcatgcgtccatcttatgacttctctttcagtcgggctagatccggcatgcttaccgtctatgctcgtcgtcgtccatggagagagctattgacccatccgtcttcctataccctacctatttccgtcagcgatttcgcatctcgggtgaagcgaaatctgagctactttcgggtcaactatgcgatgattgtactggttgtactcttcttaagcattttatggcatccaatttcaatgattgtgttcttaatcgtgtcggtaggttggtatttcctctacttccatcgcgacgaaccgttgatggtttttaatcgtacgattgatgatagaattgttctggttgttctcggagttgttacagtggtgagcttggtgctcactcatgtttggttgaatgtgttggtgtcgattgtcgtagggattgtgttgatatttttgcatgcaacttttagaattacagagaatttgtttctggaagaagaagatgccgctgatggtggattgcactcttttgttggtacctatgtgtgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="87210" stop="86036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86910" g_stop="86336" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U343389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86910" e_stop="86336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</genome_strand>
        <mrna_strand>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329260" ref_strand="+" ref_description="SGN-U329260        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G30590.1 | Symbol: None | WRKY family transcription factor | chr2:13040553-13042670 FORWARD | Aliases: T6B20.6, T6B20_6 (evalue: 2e-29, score=126) genbank/nr: gi|18402397|ref|NP_565703.1| WRKY family transcription factor [Arabidopsis thaliana] gi|20978769|sp|O04336|WR21_ARATH Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) gi|25408091|pir||C84710 hypothetical protein At2g30590 [imported] - Arabidopsis thaliana gi|1946360|gb|AAB63078.1| expressed protein [Arabidopsis thaliana] gi|13507099|gb|AAK28441.1| WRKY DNA-binding protein 21 [Arabidopsis thaliana] gi|22531205|gb|AAM97106.1| expressed protein [Arabidopsis thaliana] gi|23198046|gb|AAN15550.1| expressed protein [Arabidopsis thaliana](evalue: 2e-27, score=126)">
      <seq>gtctagtggagtagtagtagtaaataacaacctcttctctctctttctttctttgtcagagagttgaagaaaattgttgattaatatttaatactactaccactgattctctgtttctctttctaatggagtagtagtagcaataaaatgcaaaagtgtattgaaaaaaaataaagataacagctgtttttttttttttgaacatgtcaaaaattatctttggctgaacaaagtcttctctttcacacctcccaaacccctcttctctctgtctatcaagtatcaactacagccctatagagattgaagaatctagggttttgtgtcttgtttgttttctttctttgctcaatgttatagctctgcttcctgtcttgtttgttgtttgattgattaaatcaccttcaggtcatgttttgttttttctggttgattttacctttcttcagttgaatttctcgataccccttttgtttctttgtgttgtatcaattggttgttggtatctaggctctaccatttttatctgtttgttgtatctttttgtttttaaaatatggaggagattgaggaagctaacagagttgcagttgagagttgtcatagagttattagtaagttatctcaacctcatgatgagaaaattttagcaagagagactggagaggctgttcacaagtttaagaaagtggtgactctcttaaattctaatttgggtcatgcaagagtaagaaaaaccaagaaaattctgaccccttttccccatagcctcttgttagagaattcaagttgtaaaattgttgatgatcagcttaaacccttacaactgcttcctatcacctatcctgaaaatatcagactagaaattggttctaatgtgaatagtattcacccttcattggagttaaattcacatagtaaaaatcctcttcagttagcccaacaaacaagctatcactttgcccaacagcagcagcaacagaggcggtatcagcttcagcagcaggcggatatgatgtatcggcgtagtaatagtgggattagtttaaactttgatagctctacatgtactccaactatgtcatcaacgaggtcgtttatctcctcgttgagtattgatggaagtgtagctaacttggatggtaatgccttccattttatcggggcttcgcgctccgcggatcagagctcagttcaacataagaaaaggtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="98295" stop="100108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98595" g_stop="99808" g_length="1214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1215" r_length="1215" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U329260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98595" e_stop="99808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCT-TTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</genome_strand>
        <mrna_strand>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCTGTTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGTATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327588" ref_strand="+" ref_description="SGN-U327588        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G30590.1 | Symbol: None | WRKY family transcription factor | chr2:13040553-13042670 FORWARD | Aliases: T6B20.6, T6B20_6 (evalue: 1e-24, score=108) genbank/nr: gi|25140464|gb|AAN71732.1| WRKY transcription factor IId-3 [Lycopersicon esculentum](evalue: 4e-27, score=122)">
      <seq>gatcaaaggttctccgcaccctaggggatactacaagtgtagcagcatgagaggctgtcctgccaggaagcacgttgagagatgcttggaagagccatcaatgcttattgtcacttacgaaggagaacataaccatcctaggttgccatcccaatcggcaaatgcatgagatctttagagaaatgcgaacaaagatcatcatcatcataagcctcgagaaatttcgaatactctattttaaaccggcttcaattgttcctgtacatattttgctttgaagtgcaatgcacatggggccaaatactagttcaaaaattggaagggtatatggaaaggcaaatgtaaagccaggttaatgatgcagtgagactttaaaggtttcctaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="99762" stop="118533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100062" g_stop="100085" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100086" i_stop="100475" i_length="390">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100476" g_stop="100858" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="407" r_length="383" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100859" i_stop="100997" i_length="139">
            <donor d_prob="0.464" d_score="0.70"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100998" g_stop="101002" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="412" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U327588" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100062" e_stop="100085"/>
          <exon e_start="100476" e_stop="100858"/>
          <exon e_start="100998" e_stop="101002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAGGTTCTCCGCACCCTAGGTATAATGCAGCGGTATTAACTGCAAATTTGCTGTGGTTGCTTCTTAGTGTATGTACTACACGTCTTGTTGTTTTTGATGTTTGTTTCAGCTGCTTTTTTTGTCTTCTCATGTTTCCCACTTTGTTTCGCTGGAACGTGTCTTGTTTATCTTACTTGGCTGGTGGAGATAGCAAGTCCCTGGATAGTTAACAGATTGGATAATTTAACTGAATCGGCTTTGTTAACATCTTTGCTAACCGAAAGGGGATGTTGTAATGGTTCATTTGTTGATAAAAAATTGCTAGACTAGAGAATGTGAACTGGCAGCTTTGTGTAGTCTTACCTTTCCGTGTAGTTTTTTTTAGTTCGTCGAGTACAGACTCAGCTAAATCTTTCCTTGGCTTGTGCAGGGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAATTGTAAGATTATCCTCATAAAGTATGACTCCTTTTTTGAAAAAAAGTTTTAGGATTTGCTTATTTAACAATCATACTACTTAGGATGCTTGGACGGTACCAACAAGGTAAAAGTTTACATAACCAATCAACTGAGCTAAACGTCTGCCCCTAAAACGTAGGAGTA</genome_strand>
        <mrna_strand>GATCAAAGGTTCTCCGCACCCTAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAAAAAAAAAAAAAAAAAACTCGA...........................................................................................................................................GACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="103361" stop="104355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103661" g_stop="104055" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103661" e_stop="104055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAATGGCTGTAATGATCGAGAAATTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGTTGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAATGGGCAGAAGTCAGAACATGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-bxCkA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="116487" stop="115516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116239" g_stop="115816" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116239" e_stop="115816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACAAAGAGTGTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAGCAGTTTTTCACAGTC-AAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTATCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTAAAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGAGTTTTTCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>ATTTTTCAGAGAGAGTTTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6418" PGL_stop="7564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6418" e_stop="7564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="6418" e_stop="7564" e_length="1147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6418" stop="7564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACGTAAGGAACGTAATGAATGCATAGCTATATATATTATATTGAAAATGTGATTTTTTTAACAGTTTAGACTTTGAAACATAGAATGTATTTATCTGTTAGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCATAGACATACCCTTAGTGAACAAAAGCATGTGATTTTTTGAAAGAACATTATTGTGTTCCTCCTTTTTTGGAGACATGAAGGAAAAAAGGTGTATGATTTAGAGACTATGATGGTTGTGGGGTACACCCTGATCTTCCTACACTTGATGAACATATTCGAGATATTTCTTCATCTAATCGAAAATTAAAGACGTCCCTCTTGTAACATAAAAATATGTGTTACTATGAAAATCTTGGTATGAAAAAAAAAAAAGGGTTA</gDNA_template>
            <first_frame> N  F  L  K  H  Y  V  K  T  N  K  K  *  V  H  V  *  K  E  F  R  L  K  V  L  V  R  N  V  K  *  R  *  Y  L  L  H  D  R  K  Y  I  N  I  I  L  *  I  L  I  R  H  *  T  Y  I  Y  I  Y  *  G  G  C  E  V  D  N  W  D  S  K  L  F  K  V  E  H  I  I  I  I  I  I  I  S  N  R  C  I  D  E  D  F  K  K  K  K  *  *  T  K  T  S  N  I  I  I  F  F  *  I  M  N  K  V  R  *  V  I  T  Y  I  F  V  Y  *  W  H  G  H  I  Y  I  Y  I  L  Y  I  L  F  W  H  F  *  T  Y  R  S  Y  S  H  E  S  T  P  C  E  N  S  N  S  N  N  N  F  L  K  F  Y  *  I  F  V  S  G  S  F  N  W  *  K  *  L  V  R  L  F  L  T  L  *  A  F  Q  V  K  V  I  T  K  I  *  Y  C  R  T  Y  L  K  I  S  D  E  M  I  I  F  F  *  K  Y  K  N  L  S  D  V  K  I  M  I  I  F  Q  Y  H  F  K  L  *  S  *  I  S  I  *  L  S  R  K  E  R  N  E  C  I  A  I  Y  I  I  L  K  M  *  F  F  *  Q  F  R  L  *  N  I  E  C  I  Y  L  L  D  R  Y  H  G  K  G  R  R  F  V  L  E  K  G  I  D  I  P  L  V  N  K  S  M  *  F  F  E  R  T  L  L  C  S  S  F  F  G  D  M  K  E  K  R  C  M  I  *  R  L  *  W  L  W  G  T  P  *  S  S  Y  T  *  *  T  Y  S  R  Y  F  F  I  *  S  K  I  K  D  V  P  L  V  T  *  K  Y  V  L  L  *  K  S  W  Y  E  K  K  K  R  V  </first_frame>
            <second_frame>  T  F  *  N  I  M  L  K  L  I  K  N  K  F  T  S  E  R  S  L  D  *  R  F  W  Y  E  M  L  N  R  D  D  I  F  Y  T  I  E  N  I  L  I  *  F  Y  R  F  *  F  D  T  K  H  I  Y  I  Y  I  K  V  V  V  R  *  T  T  G  I  R  N  Y  L  K  L  S  I  L  L  L  L  L  L  S  R  T  D  A  *  M  K  T  S  K  R  K  N  N  K  Q  R  Q  V  T  S  S  Y  F  F  K  *  *  I  K  *  D  E  S  S  L  I  Y  L  F  I  N  G  M  A  I  Y  I  Y  I  Y  Y  I  S  C  F  G  I  S  R  H  T  D  L  I  H  M  S  P  H  R  V  K  T  L  I  P  T  T  I  F  *  N  S  I  E  F  L  *  V  V  A  L  I  G  K  N  N  *  C  D  Y  F  *  H  C  E  L  F  K  S  K  S  *  L  K  F  S  I  V  V  R  I  L  K  Y  Q  M  K  *  L  Y  F  F  K  N  I  K  I  *  V  T  *  K  L  *  S  Y  F  N  I  I  S  N  Y  S  L  E  F  L  Y  N  F  H  V  R  N  V  M  N  A  *  L  Y  I  L  Y  *  K  C  D  F  F  N  S  L  D  F  E  T  *  N  V  F  I  C  *  T  D  I  M  E  K  G  E  D  L  C  L  K  K  A  *  T  Y  P  *  *  T  K  A  C  D  F  L  K  E  H  Y  C  V  P  P  F  L  E  T  *  R  K  K  G  V  *  F  R  D  Y  D  G  C  G  V  H  P  D  L  P  T  L  D  E  H  I  R  D  I  S  S  S  N  R  K  L  K  T  S  L  L  *  H  K  N  M  C  Y  Y  E  N  L  G  M  K  K  K  K  G  L </second_frame>
            <third_frame>   L  S  K  T  L  C  *  N  *  *  K  I  S  S  R  L  K  G  V  *  I  E  G  F  G  T  K  C  *  I  E  M  I  S  S  T  R  *  K  I  Y  *  Y  N  F  I  D  S  D  S  T  L  N  I  Y  I  Y  I  L  R  W  L  *  G  R  Q  L  G  F  E  I  I  *  S  *  A  Y  Y  Y  Y  Y  Y  Y  L  E  Q  M  H  R  *  R  L  Q  K  E  K  I  I  N  K  D  K  *  H  H  H  I  F  L  N  N  E  *  S  K  M  S  H  H  L  Y  I  C  L  L  M  A  W  P  Y  I  Y  I  Y  I  I  Y  L  V  L  A  F  L  D  I  Q  I  L  F  T  *  V  H  T  V  *  K  L  *  F  Q  Q  Q  F  F  E  I  L  L  N  F  C  E  W  *  L  *  L  V  K  I  I  S  A  I  I  F  D  I  V  S  F  S  S  Q  S  H  N  *  N  L  V  L  S  Y  V  S  *  N  I  R  *  N  D  Y  I  F  L  K  I  *  K  F  E  *  R  E  N  Y  D  H  I  S  I  S  F  Q  I  I  V  L  N  F  Y  I  T  F  T  *  G  T  *  *  M  H  S  Y  I  Y  Y  I  E  N  V  I  F  L  T  V  *  T  L  K  H  R  M  Y  L  S  V  R  Q  I  S  W  K  R  E  K  I  C  A  *  K  R  H  R  H  T  L  S  E  Q  K  H  V  I  F  *  K  N  I  I  V  F  L  L  F  W  R  H  E  G  K  K  V  Y  D  L  E  T  M  M  V  V  G  Y  T  L  I  F  L  H  L  M  N  I  F  E  I  F  L  H  L  I  E  N  *  R  R  P  S  C  N  I  K  I  C  V  T  M  K  I  L  V  *  K  K  K  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20819" PGL_stop="13779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20819" e_stop="20408"/>
            <exon e_start="19114" e_stop="18889"/>
            <exon e_start="18804" e_stop="18526"/>
            <exon e_start="18425" e_stop="18249"/>
            <exon e_start="17643" e_stop="17590"/>
            <exon e_start="17482" e_stop="17334"/>
            <exon e_start="17105" e_stop="17042"/>
            <exon e_start="16973" e_stop="16803"/>
            <exon e_start="16713" e_stop="16579"/>
            <exon e_start="15775" e_stop="15687"/>
            <exon e_start="14251" e_stop="13779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.220" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.853" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.010" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20819" e_stop="20408" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19114" e_stop="18889" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.220" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18804" e_stop="18526" e_length="279"/>
          </exon>
          <intron i_serial="3" don_prob="0.853" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18425" e_stop="18249" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17643" e_stop="17590" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17482" e_stop="17334" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.125">
            <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17105" e_stop="17042" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16973" e_stop="16803" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16713" e_stop="16579" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15775" e_stop="15687" e_length="89"/>
          </exon>
          <intron i_serial="10" don_prob="0.010" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14251" e_stop="13779" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20819" stop="20408"/>
              <exon start="19114" stop="18889"/>
              <exon start="18804" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16803"/>
              <exon start="16713" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC : GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG : GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA : ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG : AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG : GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG : GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG : GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG : GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG : GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA : GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</gDNA_template>
            <first_frame> Q  K  R  K  K  T  E  K  F  I  P  P  W  L  H  L  *  A  H  Q  S  S  V  Q  L  F  L  L  Q  L  S  I  L  F  T  R  P  N  S  L  I  S  L  F  F  L  S  L  T  L  S  S  L  S  A  S  I  F  S  L  I  P  V  P  H  H  Y  L  M  A  A  V  S  L  L  L  V  L  S  H  L  M  E  L  K  L  L  G  I  T  I  S  I  Y  S  L  *  V  L  V  V  V  A  L  G  L  L  V  L  L  L  I  L  G  L  R  L  L  F  V  S  F  L  S  L  L  Y  L  L  I  Q  L  E  A  S  V  A   : R  V  C  F  G  D  V  Y  P  R  N  C  S  Y  M  H  Q  N  I  L  M  S  L  R  R  V  V  V  L  D  G  T  M  R  Q  N  L  N  M  I  G  A  P  S  L  L  I  K  M  P  S  C  S  A  S  R  V  S  T  R  I  F  *  R  M  R  M  S  L  *  *  K  G  G  E  R :   W  W  I  L  I  Q  W  M  W  M  V  N  S  T  R  L  R  T  Y  *  F  Q  L  G  A  A  H  L  S  Q  T  F  L  E  A  S  M  L  *  I  L  M  L  P  L  I  C  Q  R  S  L  T  K  L  P  L  L  E  A  V  I  L  H  L  N  L  L  E  S  S  M  D  *  K  V  R  S  M  Y  L  Y  D  K  R  R  F  *  E  A  L  M  K  K :   L  G  I  L  L  V  N  R  C  H  *  E  A  L  S  S  I  P  R  S  R  L  R  L  L  S  S  Q  Q  M  V  H  C  L  *  R  L  T  E  E  Q  L  K  V  S  L  I  S  C  L  Q  Q  D  E  V  Q  I  L  R :   I  *  D  *  I  Q  W  E  *  K  *  Q  R  T  E  P  *  R :   L  T  S  I  L  V  H  Q  C  H  Q  F  G  Q  L  E  M  L  L  I  E  L  I  *  L  Q  L  L  *  W  R  E  E  H  W  Q  K  L  F  L  L  V  N  P  Q  N  L  I  I   : G  T  Y  H  V  Q  Y  F  P  S  H  L  L  D  *  L  A  *  Q  K  K  R :   P  S  K  N  M  V  M  L  M  F  I  Q  Q  I  L  D  H  *  R  P  L  F  L  V  F  Q  I  G  F  S  *  N  W  *  Y  V  R  S  L  A  K  F  W  A  C  T  C  V  E  T  M  H  Q  K  L  Y  R :   D  L  R  L  Q  S  K  Q  G  *  P  R  R  T  S  I  P  L  W  V  F  T  L  Q  Q  Q  R  S  L  S  P  C  E  P  Q  Q  G  R  F  E  A  V  H  L  R :   V  R  Q  S  T  T  L  K  L  L  Q  E  F  D  M  R  R  *  R  L  N  L  L  S  D  T  E  N  T   : S  T  I  *  K  R  F  *  T  D  E  S  L  W  N  I  S  M  E  L  Q  R  A  K  N  F  L  R  Q  *  V  T  N  T  S  W  N  K  C  *  L  H  Y  L  K  R  S  L  K  V  V  A  M  M  V  Y  A  F  I  H  W  L  A  S  C  Q  Q  C  F  L  *  S  K  *  L  R  L  N  I  L  S  R  F  Y  L  G  E  S  R  G  L  L  T  N  I  L  M  M  L  F  S  V  I  L  L  F  C  W  V  *  G  R  I  W  A  V  *  L  *  H  C  L  L  S  I  V  F  V  I  I  K  L  V  D  M  L  Q  *  *  Q  L  S  G  L  L  N  G  F  Y  I  L  E  M  F  I  F  L  K </first_frame>
            <second_frame>  K  K  E  K  K  Q  R  N  L  F  R  H  G  Y  I  F  E  L  T  K  A  Q  Y  N  S  F  F  S  N  F  P  F  S  L  Q  D  Q  I  L  *  F  L  S  S  F  S  L  *  P  Y  Q  A  S  P  L  Q  F  S  L  S  Y  P  Y  L  I  I  I  L  W  P  P  F  H  Y  S  S  C  *  V  I  *  W  S  *  N  S  S  A  L  R  F  R  F  I  H  Y  R  C  W  *  W  W  R  *  G  F  S  F  C  F  *  F  W  G  F  G  C  C  L  *  A  S  F  L  Y  Y  I  F  *  F  N  W  R  R  R  W  H  :  V  C  A  S  G  M  C  T  Q  E  I  A  R  I  C  I  K  I  F  S  *  V  *  G  E  L  W  F  W  M  E  L  *  G  R  T  *  T  *  L  E  H  P  H  C  *  *  K  C  R  V  A  A  P  H  G  Y  L  Q  E  Y  S  E  E  C  G  C  H  S  D  R  R  A  G  K   : G  G  G  S  S  Y  S  G  C  G  W  *  T  L  L  G  *  E  H  T  N  F  S  W  G  P  P  I  Y  P  R  H  S  W  K  R  V  C  Y  R  F  *  C  C  P  *  F  A  N  E  A  *  Q  N  C  H  C  W  R  R  L  Y  C  T  *  I  C  W  N  L  Q  W  I  E  K  *  G  P  C  I  Y  T  T  K  E  G  F  E  R  L  *  *  R   : N  *  G  F  C  W  *  T  D  V  T  E  R  H  *  V  P  Y  R  G  V  A  S  G  Y  C  Q  V  S  R  W  F  T  V  Y  K  D  *  Q  R  N  S  *  R  F  L  S  Y  H  V  C  N  R  T  K  S  K  Y  *   : E  F  R  I  R  Y  S  G  S  E  N  D  K  E  R  S  H  R   : G  *  R  V  F  S  Y  I  S  A  I  N  L  G  S  W  R  C  Y  *  *  N  *  S  N  S  S  C  F  D  G  G  R  S  I  G  K  N  Y  F  C  W  *  T  H  K  T  *  L  *  :  E  R  T  M  C  S  I  F  P  A  T  Y  W  T  S  W  P  D  R  R  R   : G  H  Q  R  I  W  *  C  *  C  L  Y  S  K  F  *  T  I  K  G  H  S  F  W  S  S  R  S  G  F  H  E  I  G  S  M  C  E  V  *  Q  S  S  G  L  A  H  V  W  R  R  C  T  R  N  C  T   : G  I  C  G  C  S  Q  S  R  V  D  Q  G  G  L  R  Y  H  C  G  Y  S  P  Y  S  S  R  G  V  C  H  H  A  N  P  N  K  E  D  S  K  Q  S  I  *   : G  *  G  R  A  R  L  *  S  C  C  K  S  L  I  C  G  D  K  G  S  I  C  *  V  T  Q  R  T  R  :  V  Q  F  E  R  G  F  R  L  M  R  A  Y  G  T  S  V  W  S  Y  N  E  Q  K  T  F  *  D  N  E  S  L  I  L  L  G  T  N  A  N  F  T  T  *  K  G  L  S  R  W  L  R  *  W  Y  M  H  L  S  I  G  L  H  L  V  N  S  V  S  F  D  Q  S  N  *  G  *  T  F  C  P  D  F  I  *  G  S  P  E  D  C  *  L  I  S  *  *  C  F  S  P  L  F  Y  F  S  A  G  F  E  G  A  F  G  R  C  N  Y  N  I  A  Y  *  V  L  F  L  *  L  *  N  *  L  I  C  C  N  N  S  S  *  A  D  C  L  M  A  F  I  Y  W  K  C  S  F  S  *   </second_frame>
            <third_frame>   K  K  K  K  N  R  E  I  Y  S  A  M  A  T  S  L  S  S  P  K  L  S  T  T  L  S  S  P  T  F  H  S  L  Y  K  T  K  F  S  N  F  S  L  L  S  L  S  N  P  I  K  P  L  R  F  N  F  L  S  H  T  R  T  S  S  L  S  Y  G  R  R  F  T  T  P  R  A  E  S  S  N  G  A  E  T  P  R  H  Y  D  F  D  L  F  T  I  G  A  G  S  G  G  V  R  A  S  R  F  A  S  N  F  G  A  S  V  A  V  C  E  L  P  F  S  T  I  S  S  D  S  T  G  G  V  G  G  T :   C  V  L  R  G  C  V  P  K  K  L  L  V  Y  A  S  K  Y  S  H  E  F  E  E  S  C  G  F  G  W  N  Y  E  A  E  P  K  H  D  W  S  T  L  I  A  N  K  N  A  E  L  Q  R  L  T  G  I  Y  K  N  I  L  K  N  A  D  V  T  L  I  E  G  R  G  K  :  V  V  D  P  H  T  V  D  V  D  G  K  L  Y  S  A  K  N  I  L  I  S  V  G  G  R  P  F  I  P  D  I  P  G  S  E  Y  A  I  D  S  D  A  A  L  D  L  P  T  K  P  D  K  I  A  I  V  G  G  G  Y  I  A  L  E  F  A  G  I  F  N  G  L  K  S  E  V  H  V  F  I  R  Q  K  K  V  L  R  G  F  D  E  E  :  I  R  D  F  V  G  E  Q  M  S  L  R  G  I  E  F  H  T  E  E  S  P  Q  A  I  V  K  S  A  D  G  S  L  S  I  K  T  N  R  G  T  V  E  G  F  S  H  I  M  F  A  T  G  R  S  P  N  T  K  :  N  L  G  L  D  T  V  G  V  K  M  T  K  N  G  A  I  E  :  V  D  E  Y  S  R  T  S  V  P  S  I  W  A  V  G  D  V  T  D  R  I  N  L  T  P  V  A  L  M  E  G  G  A  L  A  K  T  I  F  A  G  E  P  T  K  P  D  Y  R :   N  V  P  C  A  V  F  S  Q  P  P  I  G  L  V  G  L  T  E  E  E  :  A  I  K  E  Y  G  D  V  D  V  Y  T  A  N  F  R  P  L  K  A  T  L  S  G  L  P  D  R  V  F  M  K  L  V  V  C  A  K  S  S  K  V  L  G  L  H  M  C  G  D  D  A  P  E  I  V  Q  :  G  F  A  V  A  V  K  A  G  L  T  K  A  D  F  D  T  T  V  G  I  H  P  T  A  A  E  E  F  V  T  M  R  T  P  T  R  K  I  R  S  S  P  S  E  :  G  K  A  E  H  D  S  K  A  A  A  R  V  *  Y  A  A  I  K  A  Q  F  V  K  *  H  R  E  H  E :   Y  N  L  K  E  V  L  D  *  *  E  L  M  E  H  Q  Y  G  V  T  T  S  K  K  L  S  K  T  M  S  H  *  Y  F  L  E  Q  M  L  T  S  L  L  K  K  V  S  Q  G  G  C  D  D  G  I  C  I  Y  P  L  A  C  I  L  S  T  V  F  P  L  I  K  V  I  E  V  K  H  S  V  Q  I  L  F  R  G  V  Q  R  I  A  D  *  Y  L  D  D  A  F  L  R  Y  S  T  F  L  L  G  L  R  A  H  L  G  G  V  I  I  T  L  L  I  K  Y  C  F  C  N  Y  K  I  S  *  Y  A  A  I  I  A  V  K  R  I  A  *  W  L  L  Y  I  G  N  V  H  F  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20817" stop="20408"/>
                    <exon start="19114" stop="18889"/>
                    <exon start="18804" stop="18526"/>
                    <exon start="18425" stop="18249"/>
                    <exon start="17643" stop="17590"/>
                    <exon start="17482" stop="17334"/>
                    <exon start="17105" stop="17042"/>
                    <exon start="16973" stop="16803"/>
                    <exon start="16713" stop="16579"/>
                    <exon start="15775" stop="15734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1704</number_coding_nucleotides>
                  <number_encoded_amino_acids>568</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKNREIYSAMATSLSSPKLSTTLSSPTFHSLYKTKFSNFSLLSLSNPIKPLRFNFLSHTRTSSLSYGRRFTTPRAESSNGAETPRHYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYEAEPKHDWSTLIANKNAELQRLTGIYKNILKNADVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAIDSDAALDLPTKPDKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVGEQMSLRGIEFHTEESPQAIVKSADGSLSIKTNRGTVEGFSHIMFATGRSPNTKNLGLDTVGVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAGEPTKPDYRNVPCAVFSQPPIGLVGLTEEEAIKEYGDVDVYTANFRPLKATLSGLPDRVFMKLVVCAKSSKVLGLHMCGDDAPEIVQGFAVAVKAGLTKADFDTTVGIHPTAAEEFVTMRTPTRKIRSSPSEGKAEHDSKAAARV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15002" e_stop="14742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15002" e_stop="14742" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15002" stop="14742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATG</gDNA_template>
            <first_frame> W  M  W  D  I  V  T  A  Q  L  F  Y  D  A  S  N  *  V  F  N  F  W  F  L  I  L  F  S  Y  N  *  G  D  C  W  C  P  K  *  L  L  L  L  R  L  Q  F  M  R  H  C  V  L  I  I  L  F  K  N  E  *  H  D  S  I  F  G  S  M  N  L  L  F  C  S  *  F  E  L  *  S  F  Y  C  H  T  M </first_frame>
            <second_frame>  G  C  G  I  L  *  L  H  N  S  F  M  M  H  L  I  K  C  S  I  F  G  F  L  F  Y  S  L  T  T  E  V  I  V  G  V  Q  N  D  Y  C  S  F  G  S  S  L  C  D  T  V  S  L  L  F  C  L  K  M  S  D  T  I  L  Y  L  E  A  *  T  Y  F  F  A  L  N  L  N  F  E  A  F  I  A  I  L   </second_frame>
            <third_frame>   D  V  G  Y  C  N  C  T  T  L  L  *  C  I  *  L  S  V  Q  F  L  V  S  Y  F  I  L  L  Q  L  R  *  L  L  V  S  K  M  I  T  A  P  S  A  P  V  Y  A  T  L  C  P  Y  Y  S  V  *  K  *  V  T  R  F  Y  I  W  K  H  E  L  T  F  L  L  L  I  *  T  L  K  L  L  L  P  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24544" PGL_stop="23243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24544" e_stop="24408"/>
            <exon e_start="23744" e_stop="23334"/>
            <exon e_start="23267" e_stop="23243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.920"/>
          <exon-intron don_prob="0.000" acc_prob="0.503" e_score="0.946"/>
          <exon-only e_score="0.640"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="24544" e_stop="24408" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="23744" e_stop="23334" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.503">
            <gDNA_intron_boundary i_start="23333" i_stop="23268" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="0.640">
            <gDNA_exon_boundary e_start="23267" e_stop="23243" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23334"/>
              <exon start="23267" stop="23243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG : GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTAT : TGATTTTTAGAAAGGGAAGAAAGAA</gDNA_template>
            <first_frame> K  K  L  E  V  V  I  I  L  S  H  *  Y  R  N  G  N  H  H  C  L  H  H  N  F  F  G  G  A  C  R  P  R  A  K  G  I  C  I  S  H  L  S  C  S  W :   I  T  I  N  E  Q  G  W  K  S  E  M  F  N  G  R  K  G  K  G  *  I  K  V  G  N  G  R  I  I  D  G  S  S  S  S  S  K  H  V  K  P  S  S  N  G  F  G  *  *  K  N  E  H  *  R  N  R  A  T  I  W  T  Q  Q  Q  S  S  W  L  D  P  F  R  C  I  W  F  D  L  V  S  L  H  C  L  H  F  W  T  *  *  R  *  R  I  W  N  V  S  L  I  F  V  Y  Y  F  F  F  V  I  L  *  S  N  F  N  E  F  N  Y  F  F  *  C  C  I  S  Y  T  L  Q  L  K  Y  C  I :   D  F  *  K  G  K  K  E </first_frame>
            <second_frame>  K  S  *  K  L  *  S  F  S  L  T  N  T  E  M  A  T  I  T  A  C  T  T  T  S  S  V  A  R  A  A  L  V  Q  R  G  S  V  S  R  T  S  V  V  L   : G  L  P  S  M  S  K  G  G  K  V  K  C  S  M  E  G  K  G  K  G  E  S  K  L  G  M  G  E  S  L  M  A  A  A  V  A  A  S  M  S  S  P  V  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  L  G  V  F  G  L  I  W  S  L  Y  T  V  Y  T  S  G  L  D  E  D  E  E  S  G  M  S  L  *  F  L  S  I  I  F  F  L  S  Y  Y  N  Q  T  L  M  N  L  T  T  S  F  D  V  V  S  L  T  L  F  N  *  S  I  V   : L  I  F  R  K  G  R  K   </second_frame>
            <third_frame>   K  V  R  S  C  D  H  S  L  S  L  I  Q  K  W  Q  P  S  L  L  A  P  Q  L  L  R  W  R  V  P  P  S  C  K  G  D  L  Y  L  A  P  Q  L  F  L  :  D  Y  H  Q  *  A  R  V  E  K  *  N  V  Q  W  K  E  R  E  R  V  N  Q  S  W  E  W  E  N  H  *  W  Q  Q  Q  *  Q  Q  A  C  Q  A  Q  *  Q  W  L  W  L  M  K  E  *  A  L  K  E  Q  G  Y  H  L  D  S  A  T  I  F  L  V  G  S  F  *  V  Y  L  V  *  F  G  L  S  T  L  F  T  L  L  D  L  M  K  M  K  N  L  E  C  L  F  N  F  C  L  L  F  F  F  C  H  T  I  I  K  L  *  *  I  *  L  L  L  L  M  L  Y  L  L  H  S  S  I  E  V  L  Y  :  *  F  L  E  R  E  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24525" stop="24408"/>
                    <exon start="23744" stop="23440"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLTNTEMATITACTTTSSVARAALVQRGSVSRTSVVLGLPSMSKGGKVKCSMEGKGKGESKLGMGESLMAAAVAASMSSPVAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESGMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29289" PGL_stop="32611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29289" e_stop="29422"/>
            <exon e_start="29532" e_stop="29653"/>
            <exon e_start="30611" e_stop="30685"/>
            <exon e_start="30855" e_stop="31082"/>
            <exon e_start="31166" e_stop="31368"/>
            <exon e_start="31469" e_stop="31498"/>
            <exon e_start="31606" e_stop="31725"/>
            <exon e_start="32269" e_stop="32611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29289" e_stop="29422" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.892">
            <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29532" e_stop="29653" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30611" e_stop="30685" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30855" e_stop="31082" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31166" e_stop="31368" e_length="203"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31498" e_length="30"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.643">
            <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31606" e_stop="31725" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543"/>
          </intron>
          <exon e_serial="8" e_score="0.971">
            <gDNA_exon_boundary e_start="32269" e_stop="32611" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29422"/>
              <exon start="29532" stop="29653"/>
              <exon start="30611" stop="30685"/>
              <exon start="30855" stop="31082"/>
              <exon start="31166" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG : AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG : ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA : GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG : GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG : CTGGACAATCATCGAAATCAGCTGATCCAG : TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG : GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATACGCACAAATGTAATTT</gDNA_template>
            <first_frame> *  C  S  S  C  C  *  R  T  S  K  K  I  A  I  A  S  Y  *  L  R  R  R  *  R  *  *  S  I  C  C  *  W  D  T  K  *  N  A  N  H  *  T  N  * :   V  S  F  *  I  S  S  F  R  S  S  T  R  R  S  M  Q  L  S  *  H  S  D  T  R  T  R  D  C  C  L  P  G  F  R  *  A  H  L  K   : D  *  *  S  Q  P  G  *  S  A  Q  I  E  E  C  N  D  *  V  D  *  S  G  S  K   : S  K  G  *  S  *  T  T  T  R  R  *  W  *  H  G  *  P  L  S  L  K  K  I  S  C  R  S  F  I  P  P  E  W  S  G  G  T  L  L  V  S  *  Y  V  L  N  T  L  K  A  I  I  Q  S  K  Q  D  Q  W  D  N  S  *  G  D  *  C  *  G  T  *  N  V  A  *   : G  V  L  C  A  N  *  K  H  D  E  Q  I  D  N  G  K  T  M  K  K  T  G  T  W  C  P  L  H  S  Q  N  E  I  M  N  *  S  L  I  T  L  I  T  *  *  Y  S  C  S  F  I  Q  L  R  E  Y  I  D  D  T  E  D  Y  I  N  I  Q  :  L  D  N  H  R  N  Q  L  I  Q  :  L  E  L  F  L  S  S  G  T  V  C  L  T  V  Y  S  L  V  A  A  I  F  G  M  N  I  P  V  P  W  K  K  D  H  G  Y  L  F  K  W  :  V  V  I  L  S  G  I  A  S  A  S  V  F  L  S  I  I  A  Y  A  R  H  K  G  L  V  G  S  *  I  L  I  P  I  T  P  P  I  S  I  Y  K  Y  K  I  H  Q  T  C  Q  H  V  E  I  *  F  L  N  C  N  F  *  R  T  R  Q  S  H  D  W  R  *  D  M  Q  K  C  Y  D  T  N  L  *  P  K  T  C  L  L  C  I  D  E  F  N  N  Q  Y  I  Y  I  Y  I  Y  I  K  S  H  I  R  T  N  V  I  </first_frame>
            <second_frame>  N  V  L  P  V  V  E  E  L  Q  R  R  L  P  L  P  A  I  S  L  G  E  G  E  D  D  D  Q  S  V  V  N  G  T  R  N  E  M  Q  T  I  E  P  T   : E  F  P  F  E  F  R  A  L  E  V  A  L  E  G  V  C  S  Y  L  D  T  Q  T  R  E  L  E  T  A  A  Y  P  A  L  D  E  L  T  S  K  :  I  S  S  R  N  L  D  R  V  R  K  L  K  S  A  M  T  R  L  T  S  R  V  Q  K  :  V  R  D  D  L  E  Q  L  L  E  D  D  G  D  M  A  D  L  Y  L  S  R  K  L  V  A  G  V  S  S  P  L  S  G  Q  V  A  P  Y  W  S  P  D  T  F  S  I  R  S  K  L  L  S  K  A  S  R  I  S  G  I  T  H  E  E  T  D  V  E  E  L  E  M  L  L  E  :  A  Y  F  V  Q  I  E  S  T  M  N  K  L  T  T  V  R  Q  *  K  K  Q  E  P  G  A  L  Y  I  A  K  M  K  *  *  T  D  H  *  *  L  *  L  H  S  D  T  R  V  P  L  S  S  C  A  N  I  L  M  T  L  R  T  I  S  I  F  S :   W  T  I  I  E  I  S  *  S  S :   W  S  C  S  *  V  L  V  Q  F  V  *  Q  C  T  P  W  W  L  Q  Y  L  E  *  I  F  Q  F  H  G  R  K  T  M  A  T  F  L  N  G :   W  S  F  F  L  E  L  L  L  H  P  F  S  Y  Q  *  L  H  M  L  G  T  R  V  L  L  D  L  K  S  *  Y  L  L  L  L  R  S  L  Y  I  N  I  K  Y  T  R  H  V  N  M  L  K  F  N  F  *  I  V  T  F  R  G  R  G  R  A  M  I  G  D  K  I  C  K  N  V  T  I  R  I  Y  D  L  K  H  A  C  Y  V  L  M  N  S  T  I  N  I  Y  I  Y  I  Y  I  *  N  L  T  Y  A  Q  M  *  F </second_frame>
            <third_frame>   M  F  F  L  L  L  K  N  F  K  E  D  C  H  C  Q  L  L  A  *  E  K  V  K  M  M  I  N  L  L  L  M  G  H  E  M  K  C  K  P  L  N  Q  L  :  S  F  L  L  N  F  E  L  *  K  *  H  *  K  E  Y  A  V  I  L  T  L  R  H  E  N  *  R  L  L  L  T  R  L  *  M  S  S  P  Q  R :   L  V  V  A  T  W  I  E  C  A  N  *  R  V  Q  *  L  G  *  L  V  G  F  K  K :   *  G  M  I  L  N  N  Y  S  K  M  M  V  T  W  L  T  F  I  S  Q  E  N  *  L  P  E  F  H  P  P  *  V  V  R  W  H  L  T  G  L  L  I  R  S  Q  Y  A  Q  S  Y  Y  P  K  Q  A  G  S  V  G  *  L  M  R  R  L  M  L  R  N  L  K  C  C  L  R :   R  T  L  C  K  L  K  A  R  *  T  N  *  Q  R  *  D  N  E  K  N  R  N  L  V  P  F  T  *  P  K  *  N  N  E  L  I  I  D  N  S  N  Y  I  V  I  L  V  F  L  Y  P  A  A  R  I  Y  *  *  H  *  G  L  Y  Q  Y  S   : A  G  Q  S  S  K  S  A  D  P   : V  G  A  V  P  E  F  W  Y  S  L  F  D  S  V  L  L  G  G  C  N  I  W  N  E  Y  S  S  S  M  E  E  R  P  W  L  P  F  *  M   : G  G  H  S  F  W  N  C  F  C  I  R  F  P  I  N  N  C  I  C  *  A  Q  G  S  C  W  I  L  N  L  N  T  Y  Y  S  S  D  L  Y  I  *  I  *  N  T  P  D  M  S  T  C  *  N  L  I  S  K  L  *  L  L  E  D  E  A  E  P  *  L  E  I  R  Y  A  K  M  L  R  Y  E  F  M  T  *  N  M  L  V  M  Y  *  *  I  Q  Q  S  I  Y  I  Y  I  Y  I  Y  K  I  S  H  T  H  K  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29290" stop="29422"/>
                    <exon start="29532" stop="29653"/>
                    <exon start="30611" stop="30685"/>
                    <exon start="30855" stop="31082"/>
                    <exon start="31166" stop="31222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVLPVVEELQRRLPLPAISLGEGEDDDQSVVNGTRNEMQTIEPTEFPFEFRALEVALEGVCSYLDTQTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTSRVQKVRDDLEQLLEDDGDMADLYLSRKLVAGVSSPLSGQVAPYWSPDTFSIRSKLLSKASRISGITHEETDVEELEMLLEAYFVQIESTMNKLTTVRQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31303" stop="31368"/>
                    <exon start="31469" stop="31498"/>
                    <exon start="31606" stop="31725"/>
                    <exon start="32269" stop="32355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSCSFIQLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTVYSLVAAIFGMNIPVPWKKDHGYLFKWVVILSGIASASVFLSIIAYARHKGLVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56056" PGL_stop="46549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56056" e_stop="55937"/>
            <exon e_start="53184" e_stop="53051"/>
            <exon e_start="52871" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="51575" e_stop="51486"/>
            <exon e_start="50207" e_stop="50143"/>
            <exon e_start="49268" e_stop="49107"/>
            <exon e_start="48813" e_stop="48735"/>
            <exon e_start="48490" e_stop="48413"/>
            <exon e_start="47348" e_stop="47274"/>
            <exon e_start="47119" e_stop="47084"/>
            <exon e_start="46991" e_stop="46549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.944"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.969"/>
          <exon-intron don_prob="0.770" acc_prob="0.803" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.974"/>
          <exon-intron don_prob="0.881" acc_prob="0.186" e_score="0.973"/>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.781"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56056" e_stop="55937" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53184" e_stop="53051" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52588" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="51575" e_stop="51486" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="50207" e_stop="50143" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="49268" e_stop="49107" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.770" acc_prob="0.803">
            <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="48813" e_stop="48735" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="48490" e_stop="48413" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064"/>
          </intron>
          <exon e_serial="10" e_score="0.973">
            <gDNA_exon_boundary e_start="47348" e_stop="47274" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.881" acc_prob="0.186">
            <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47084" e_length="36"/>
          </exon>
          <intron i_serial="11" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="0.781">
            <gDNA_exon_boundary e_start="46991" e_stop="46549" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47084"/>
              <exon start="46991" stop="46549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG : ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG : GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA : GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG : GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG : CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG : GTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAG : TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG : ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCATGCTAATTTGTGAACTGTCCCTTAGTTGTCTGTTTGCCAGTTGGGCTGAGAGAGTTGTGTATGCTGTGAAGAGTTGTAAAGTACTGATTTAGAAGTCTATCTTCATGTTTTTTAACCTTGGAATGACTGAATAATGCTGGTGAAGAATGATACTTTTTAGTTGTTATAATGTACTTACTTTTTTCAAAC</gDNA_template>
            <first_frame> Y  L  P  L  C  Y  S  E  K  L  S  Y  F  P  W  K  K  V  D  S  F  F  C  P  V  S  E  T  E  I  P  H  R  F  A  P  T  N  K  K  :  M  Q  G  V  L  K  F  L  K  L  S  A  P  D  A  S  L  V  C  N  V  C  *  N  L  *  S  W  L  L  Q  I  L  L  W  F  L  I  F  Y  T  L  I  G  W :   H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  V  L  I  T  S  F  S  E  V  H  K  D  E  Y  L  D  P  R  T  A  Q  V  A  R  V  D  H  V  K  Q  :  V  C  K  D  V  R  P  A  R  D  E  E  L  P  S  A  F  V  E  E  Y  R :   S  A  M  D  A  E  I  M  K  Y  V  S  E  T  Y  P  K  G  I  C  S  V  Y  C  T  K  G  K  D  V  E  E  P  G  F  D  F  E  L  V  V  V  I  S  A  A  R  H  S  P  Q  N  F  C :   N  G  S  W  R  S  I  W  N  I  E  F  K  D  D  I  Q  S  V  E  V  R  G  E  M  Q  :  V  G  A  H  Y  F  E  E  G  N  V  Q  L  D  A  K  H  K  C  K  D  T  T  L  I  Q  :  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  :  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L  R  L  P  S  P  A  I  C  C  L  L  S  I  V  F  L  *  E  R  K  V  H  A  N  L  *  T  V  P  *  L  S  V  C  Q  L  G  *  E  S  C  V  C  C  E  E  L  *  S  T  D  L  E  V  Y  L  H  V  F  *  P  W  N  D  *  I  M  L  V  K  N  D  T  F  *  L  L  *  C  T  Y  F  F  Q   </first_frame>
            <second_frame>  I  F  L  F  V  I  L  K  N  F  L  T  F  H  G  K  K  *  I  H  S  S  A  Q  F  R  R  R  K  F  L  I  D  L  L  L  R  T  K  R :   C  K  V  C  *  N  F  *  S  C  L  L  R  M  L  L  W  F  A  M  S  V  E  I  C  E  V  G  F  S  K  Y  F  S  G  F  L  F  F  I  H  *  L  A   : G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  M :   Y  *  L  H  H  L  V  R  F  I  R  M  S  I  L  I  P  G  L  R  R  L  P  E  L  T  M  S  S  K :   F  V  K  T  L  G  Q  Q  E  M  K  N  F  H  L  L  S  W  K  S  I   : G  L  P  W  M  L  K  L  *  S  M  *  V  K  H  I  Q  K  A  S  V  Q  F  T  V  R  R  E  R  M  W  K  S  Q  D  L  T  L  N  L  L  W  *  F  Q  L  L  G  I  V  L  R  I  S   : A  M  E  A  G  D  Q  Y  G  I  L  N  L  R  T  I  F  N  L  *  K  *  E  A  R  C  R :   L  A  P  I  T  L  K  R  E  M  Y  S  *  M  Q  N  T  N  V  R  I  Q  R  *  F  S :   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R :   H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  D  C  R  L  R  L  F  V  A  F  F  L  L  Y  S  F  E  R  G  K  F  M  L  I  C  E  L  S  L  S  C  L  F  A  S  W  A  E  R  V  V  Y  A  V  K  S  C  K  V  L  I  *  K  S  I  F  M  F  F  N  L  G  M  T  E  *  C  W  *  R  M  I  L  F  S  C  Y  N  V  L  T  F  F  K  </second_frame>
            <third_frame>   S  S  S  L  L  F  *  K  T  F  L  L  S  M  E  K  S  R  F  I  L  L  P  S  F  G  D  G  N  S  S  *  I  C  S  Y  E  Q  K   : D  A  R  C  V  E  I  S  E  V  V  C  S  G  C  F  F  G  L  Q  C  L  L  K  F  V  K  L  A  S  P  N  T  S  L  V  S  Y  F  L  Y  T  N  W  L  :  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : C  T  D  Y  I  I  *  *  G  S  *  G  *  V  S  *  S  P  D  C  A  G  C  Q  S  *  P  C  Q  A   : S  L  *  R  R  *  A  S  K  R  *  R  T  S  I  C  F  R  G  R  V  *  :  V  C  H  G  C  *  N  Y  E  V  C  E  *  N  I  S  K  R  H  L  F  S  L  L  Y  E  G  K  G  C  G  R  A  R  I  *  L  *  T  C  C  G  D  F  S  C  *  A  *  S  S  E  F  L  :  Q  W  K  L  A  I  N  M  E  Y  *  I  *  G  R  Y  S  I  C  R  S  E  R  R  D  A   : G  W  R  P  L  L  *  R  G  K  C  T  A  R  C  K  T  Q  M  *  G  Y  N  A  N  S   : V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S   : D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E  I  A  V  S  G  Y  L  L  P  S  F  Y  C  I  P  L  R  E  E  S  S  C  *  F  V  N  C  P  L  V  V  C  L  P  V  G  L  R  E  L  C  M  L  *  R  V  V  K  Y  *  F  R  S  L  S  S  C  F  L  T  L  E  *  L  N  N  A  G  E  E  *  Y  F  L  V  V  I  M  Y  L  L  F  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="51575" stop="51486"/>
                    <exon start="50207" stop="50143"/>
                    <exon start="49268" stop="49107"/>
                    <exon start="48813" stop="48735"/>
                    <exon start="48490" stop="48413"/>
                    <exon start="47348" stop="47274"/>
                    <exon start="47119" stop="47084"/>
                    <exon start="46991" stop="46884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDVLITSFSEVHKDEYLDPRTAQVARVDHVKQVCKDVRPARDEELPSAFVEEYRSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNFCNGSWRSIWNIEFKDDIQSVEVRGEMQVGAHYFEEGNVQLDAKHKCKDTTLIQSPDDSAISLVNIIRHHETEYLASLQTSYLKLPDTTFKDLRRKLPVTRTLFPWHNTAQFSLTRDIEKELRIGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55958" stop="55937"/>
                    <exon start="53184" stop="53051"/>
                    <exon start="52871" stop="52770"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSYEQKDARCVEISEVVCSGCFFGLQCLLKFVKLASPNTSLVSYFLYTNWLAHVRASHGHTTSSNKREGKATLVGLMVSSSNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47175" e_stop="47084"/>
            <exon e_start="46991" e_stop="46801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47175" e_stop="47084" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="46991" e_stop="46801" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47175" stop="47084"/>
              <exon start="46991" stop="46801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</gDNA_template>
            <first_frame> K  S  L  L  P  V  F  S  F  Q  V  T  D  R  L  F  T  G  R  H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  </first_frame>
            <second_frame>  S  L  C  C  R  Y  F  R  S  K  L  L  I  D  F  L  L  A  D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E </second_frame>
            <third_frame>   V  S  V  A  G  I  F  V  P  S  Y  *  S  T  F  Y  W  Q  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55053" e_stop="54357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="55053" e_stop="54357" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55053" stop="54357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</gDNA_template>
            <first_frame> L  T  K  Y  I  L  *  Y  P  N  T  F  T  T  H  G  D  P  R  V  V  Y  Q  T  N  *  V  V  G  N  I  E  D  S  L  H  H  L  G  Y  G  R  D  Y  Y  R  D  R  *  K  I  V  *  S  M  G  V  N  Y  H  Y  T  C  N  Y  Y  V  V  V  D  M  N  L  V  Y  V  Y  F  K  L  L  K  L  V  Y  R  E  L  R  V  V  R  L  P  H  H  I  L  P  G  V  G  D  S  F  T  D  Y  F  D  C  S  L  I  Y  N  I  *  C  F  C  F  V  S  I  R  M  N  C  L  C  F  D  F  T  S  L  *  L  I  L  F  F  R  L  *  I  L  T  Y  *  A  C  F  D  C  P  I  I  T  Y  F  L  C  *  K  M  *  H  S  S  P  F  W  F  A  S  C  N  V  K  I  F  W  *  I  I  E  H  N  R  L  C  Y  P  Y  R  C  *  Q  T  A  Y  L  E  P  I  C  N  I  A  R  C  *  *  S  F  I  I  T  Y  V  *  S  Y  E  *  I  *  T  C  S  </first_frame>
            <second_frame>  S  R  N  I  F  C  N  T  Q  T  H  L  L  P  M  G  I  P  E  *  F  T  R  Q  I  E  L  W  A  T  S  K  I  L  F  T  I  *  A  M  E  E  I  T  I  E  I  D  E  R  L  F  S  Q  W  V  *  I  I  T  T  L  A  T  T  M  S  *  S  I  *  T  *  Y  M  C  I  L  N  C  S  N  *  C  I  E  S  *  G  W  Y  G  C  H  T  T  S  Y  L  G  L  V  I  V  S  Q  I  T  L  T  V  V  *  Y  I  I  S  D  A  F  V  L  *  V  S  E  *  T  V  F  V  S  I  L  L  P  Y  D  *  S  S  S  F  V  F  K  Y  *  H  I  R  H  A  L  T  V  L  S  L  R  T  S  C  A  R  R  C  N  I  L  H  L  F  G  L  P  P  V  T  *  K  F  F  G  R  *  L  N  I  T  G  C  V  I  L  I  D  V  N  K  Q  H  I  L  S  P  Y  A  I  L  R  G  A  D  K  V  S  L  L  R  T  C  D  H  M  N  K  S  E  R  V  V </second_frame>
            <third_frame>   H  E  I  Y  S  V  I  P  K  H  I  Y  Y  P  W  G  S  P  S  S  L  P  D  K  L  S  C  G  Q  H  R  R  F  S  S  P  S  R  L  W  K  R  L  L  *  R  *  M  K  D  C  L  V  N  G  C  E  L  S  L  H  L  Q  L  L  C  R  S  R  Y  E  L  S  I  C  V  F  *  I  A  Q  I  S  V  *  R  V  E  G  G  T  A  A  T  P  H  L  T  W  G  W  *  *  F  H  R  L  L  *  L  *  F  D  I  *  Y  L  M  L  L  F  C  E  Y  Q  N  E  L  S  L  F  R  F  Y  F  L  M  I  N  P  L  L  S  S  L  N  I  D  I  L  G  M  L  *  L  S  Y  H  Y  V  L  L  V  L  E  D  V  T  F  F  T  F  L  V  C  L  L  *  R  E  N  F  L  V  D  N  *  T  *  Q  A  V  L  S  L  *  M  L  T  N  S  I  S  *  A  H  M  Q  Y  C  E  V  L  I  K  F  H  Y  Y  V  R  V  I  I  *  I  N  L  N  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54894" stop="54700"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGVNYHYTCNYYVVVDMNLVYVYFKLLKLVYRELRVVRLPHHILPGVGDSFTDYFDCSLIYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="52718" PGL_stop="53463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52718" e_stop="53463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="52718" e_stop="53463" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52718" stop="53463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTATTTTTTGCAATCTTATTAACAGATATTCTTCTCCATTGAATTCAATTCAATTCAAATTCGAAGAAGATACCATCAACCCCACCAGAGTCGCTTTCCCCTCTCTTTTGTTACTAGATGTAGTGTGCCCGTGCGAGGCACGGACATGTGCCTGACATTGTTGTTTGTTATATCGTTTAATTTGATAAAAGATAAGGAGAATATAAAGATGAAATACACATCAAAGAATGTCTGAAGAAGTCTAAGTCAGATTTGAAAGCTAAAGAGCTATTCACTCTTTTCCCATAAAGAAAAATCATAAAATTATCTTAAAGTTAGTTCACTACTAACCAGCCAATTAGTGTATAAAAAATAAGAAACCAGAGAAGTATTTGGAGAAGCCAACTTCACAAATTTCAACAGACATTGCAAACCAAAGAAGCATCCGGAGCAGACAACTTCAGAAATTTCAACACACCTTGCATCTGCCATTACAAAGTACGATTCGAACATTATCAAGTGTGTAATGACACATCAAACTCTAATTCTTCTAGCACAAGAAGTACGTGATGATGACCGTCAACGGATGCGTAATATATCAATATTTGAAGACGAAAGAAGAGGATTAATCATAAAGAAGTAAAATTGAAACAAAGACAGCTCATTCTGAAACTTGCAAAACAAAATCTGGTAGTCATCTATCAAACACTAATTGAATGCCGAAAAGGTTGCCTATAGTAAGGCACTAATAACTTACCCGCATT</gDNA_template>
            <first_frame> H  L  F  F  A  I  L  L  T  D  I  L  L  H  *  I  Q  F  N  S  N  S  K  K  I  P  S  T  P  P  E  S  L  S  P  L  F  C  Y  *  M  *  C  A  R  A  R  H  G  H  V  P  D  I  V  V  C  Y  I  V  *  F  D  K  R  *  G  E  Y  K  D  E  I  H  I  K  E  C  L  K  K  S  K  S  D  L  K  A  K  E  L  F  T  L  F  P  *  R  K  I  I  K  L  S  *  S  *  F  T  T  N  Q  P  I  S  V  *  K  I  R  N  Q  R  S  I  W  R  S  Q  L  H  K  F  Q  Q  T  L  Q  T  K  E  A  S  G  A  D  N  F  R  N  F  N  T  P  C  I  C  H  Y  K  V  R  F  E  H  Y  Q  V  C  N  D  T  S  N  S  N  S  S  S  T  R  S  T  *  *  *  P  S  T  D  A  *  Y  I  N  I  *  R  R  K  K  R  I  N  H  K  E  V  K  L  K  Q  R  Q  L  I  L  K  L  A  K  Q  N  L  V  V  I  Y  Q  T  L  I  E  C  R  K  G  C  L  *  *  G  T  N  N  L  P  A   </first_frame>
            <second_frame>  I  Y  F  L  Q  S  Y  *  Q  I  F  F  S  I  E  F  N  S  I  Q  I  R  R  R  Y  H  Q  P  H  Q  S  R  F  P  L  S  F  V  T  R  C  S  V  P  V  R  G  T  D  M  C  L  T  L  L  F  V  I  S  F  N  L  I  K  D  K  E  N  I  K  M  K  Y  T  S  K  N  V  *  R  S  L  S  Q  I  *  K  L  K  S  Y  S  L  F  S  H  K  E  K  S  *  N  Y  L  K  V  S  S  L  L  T  S  Q  L  V  Y  K  K  *  E  T  R  E  V  F  G  E  A  N  F  T  N  F  N  R  H  C  K  P  K  K  H  P  E  Q  T  T  S  E  I  S  T  H  L  A  S  A  I  T  K  Y  D  S  N  I  I  K  C  V  M  T  H  Q  T  L  I  L  L  A  Q  E  V  R  D  D  D  R  Q  R  M  R  N  I  S  I  F  E  D  E  R  R  G  L  I  I  K  K  *  N  *  N  K  D  S  S  F  *  N  L  Q  N  K  I  W  *  S  S  I  K  H  *  L  N  A  E  K  V  A  Y  S  K  A  L  I  T  Y  P  H  </second_frame>
            <third_frame>   F  I  F  C  N  L  I  N  R  Y  S  S  P  L  N  S  I  Q  F  K  F  E  E  D  T  I  N  P  T  R  V  A  F  P  S  L  L  L  L  D  V  V  C  P  C  E  A  R  T  C  A  *  H  C  C  L  L  Y  R  L  I  *  *  K  I  R  R  I  *  R  *  N  T  H  Q  R  M  S  E  E  V  *  V  R  F  E  S  *  R  A  I  H  S  F  P  I  K  K  N  H  K  I  I  L  K  L  V  H  Y  *  P  A  N  *  C  I  K  N  K  K  P  E  K  Y  L  E  K  P  T  S  Q  I  S  T  D  I  A  N  Q  R  S  I  R  S  R  Q  L  Q  K  F  Q  H  T  L  H  L  P  L  Q  S  T  I  R  T  L  S  S  V  *  *  H  I  K  L  *  F  F  *  H  K  K  Y  V  M  M  T  V  N  G  C  V  I  Y  Q  Y  L  K  T  K  E  E  D  *  S  *  R  S  K  I  E  T  K  T  A  H  S  E  T  C  K  T  K  S  G  S  H  L  S  N  T  N  *  M  P  K  R  L  P  I  V  R  H  *  *  L  T  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53076" stop="53342"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETREVFGEANFTNFNRHCKPKKHPEQTTSEISTHLASAITKYDSNIIKCVMTHQTLILLAQEVRDDDRQRMRNISIFEDERRGLIIKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52743" stop="52955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIFFSIEFNSIQIRRRYHQPHQSRFPLSFVTRCSVPVRGTDMCLTLLFVISFNLIKDKENIKMKYTSKNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53069" stop="53269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRNQRSIWRSQLHKFQQTLQTKEASGADNFRNFNTPCICHYKVRFEHYQVCNDTSNSNSSSTRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65233" PGL_stop="65984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65233" e_stop="65984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="65233" e_stop="65984" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65233" stop="65984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAATCAG</gDNA_template>
            <first_frame> C  H  Q  R  L  L  L  F  S  F  L  E  N  Q  L  S  K  Q  H  M  I  K  K  V  L  D  S  P  I  F  I  E  R  Q  C  R  L  A  S  W  I  R  N  F  K  H  I  P  V  R  I  K  H  C  A  P  V  L  M  C  S  P  N  I  R  L  S  R  I  H  A  L  I  N  I  Q  I  D  Y  L  I  I  T  Y  S  I  K  *  I  V  L  N  N  I  S  I  Y  C  V  L  I  Q  V  L  L  G  L  V  L  L  N  P  S  P  I  R  I  S  T  P  S  Y  I  S  Y  I  Y  L  P  C  I  P  L  L  G  *  H  F  N  T  I  N  I  P  S  W  Y  Q  E  P  E  N  L  D  L  F  F  S  S  F  F  S  L  F  R  A  P  I  V  P  S  L  L  L  G  G  G  S  H  D  N  R  G  G  S  S  R  S  T  S  F  W  R  *  T  P  S  Q  A  S  S  C  P  D  S  Q  K  I  I  R  H  K  L  P  Y  M  E  N  Y  R  S  Y  S  P  *  G  Q  L  P  S  Q  I  R  *  W  K  H  R  T  G  A  G  S  H  H  R  H  R  Q  I   </first_frame>
            <second_frame>  A  I  N  G  Y  Y  F  S  H  F  L  K  I  N  Y  P  S  S  I  *  *  K  K  Y  W  I  L  P  F  S  S  R  D  N  V  V  L  L  P  G  F  A  T  S  S  I  Y  R  Y  A  L  S  T  V  H  L  C  L  C  V  P  L  T  L  D  L  A  G  S  M  P  L  *  I  F  K  *  I  T  L  *  *  H  I  V  L  N  K  *  Y  *  I  I  L  V  F  T  V  Y  *  S  K  S  Y  *  D  *  Y  S  L  I  L  V  L  L  G  L  V  L  L  P  I  S  P  I  Y  I  S  H  V  F  P  Y  *  V  N  T  S  I  Q  S  I  F  L  H  G  I  K  S  Q  K  T  *  I  F  F  S  L  V  F  F  L  S  L  G  H  R  S  F  P  L  F  S  W  A  A  A  A  M  T  T  E  V  D  P  L  D  P  L  P  S  G  V  K  L  L  L  R  H  L  H  A  L  I  P  K  K  L  S  D  I  N  Y  P  T  W  K  I  T  V  L  T  A  L  E  A  N  Y  L  L  K  Y  V  D  G  S  T  E  P  A  P  A  V  I  T  A  T  D  K  S  </second_frame>
            <third_frame>   P  S  T  A  I  T  F  L  I  S  *  K  S  I  I  Q  A  A  Y  D  K  K  S  T  G  F  S  H  F  H  R  E  T  M  S  S  C  F  L  D  S  Q  L  Q  A  Y  T  G  T  H  *  A  L  C  T  C  A  Y  V  F  P  *  H  *  T  *  Q  D  P  C  P  Y  K  Y  S  N  R  L  P  Y  N  N  I  *  Y  *  I  N  S  I  K  *  Y  *  Y  L  L  C  T  N  P  S  P  I  R  I  S  T  P  *  S  *  S  Y  *  D  *  Y  S  F  L  Y  L  L  Y  I  S  P  M  Y  S  L  I  R  L  T  L  Q  Y  N  Q  Y  S  F  M  V  S  R  A  R  K  P  R  S  F  F  L  *  F  F  F  S  L  *  G  T  D  R  S  L  S  S  L  G  R  R  Q  P  *  Q  P  R  W  I  L  S  I  H  F  L  L  A  L  N  S  F  S  G  I  F  M  P  *  F  P  K  N  Y  Q  T  *  I  T  L  H  G  K  L  P  F  L  Q  P  L  R  P  I  T  F  S  N  T  L  M  E  A  Q  N  R  R  R  Q  S  S  P  P  Q  T  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65693" stop="65983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFSLVFFLSLGHRSFPLFSWAAAAMTTEVDPLDPLPSGVKLLLRHLHALIPKKLSDINYPTWKITVLTALEANYLLKYVDGSTEPAPAVITATDKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65233" stop="65496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQRLLLFSFLENQLSKQHMIKKVLDSPIFIERQCRLASWIRNFKHIPVRIKHCAPVLMCSPNIRLSRIHALINIQIDYLIITYSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68231" PGL_stop="68671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68231" e_stop="68671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="68231" e_stop="68671" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68231" stop="68671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCATCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTACCTCATGGAAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCTATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAAATGACAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  Y  L  M  E  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  V  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  S  T  R  L  V  W  L  L  K </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  I  T  A  R  A  T  P  Q  Y  S  S  H  V  T  S  W  K  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  L  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  K  *  Q  Y  F  Q  V  Q  G  S  F  G  C  *   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  S  P  P  V  P  P  P  N  T  H  P  M  L  P  H  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  Y  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  N  D  S  I  S  K  Y  K  A  R  L  V  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68233" stop="68670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPESSPPVPPPNTHPMLPHGKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPYGRHPVGCKWVYKIKHNANDSISKYKARLVAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="86910" PGL_stop="86336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86910" e_stop="86336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86910" e_stop="86336" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86910" stop="86336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</gDNA_template>
            <first_frame> F  E  R  E  S  Q  C  N  P  N  *  I  I  M  R  P  S  Y  D  F  S  F  S  R  A  R  S  G  M  L  T  V  Y  A  R  R  R  P  W  R  E  L  L  T  H  P  S  S  Y  T  L  P  I  S  V  S  D  F  A  S  R  V  K  R  N  L  S  Y  F  R  V  N  Y  A  M  I  V  L  V  V  L  F  L  S  I  L  W  H  P  I  S  M  I  V  F  L  I  V  S  V  G  W  Y  F  L  Y  F  H  R  D  E  P  L  M  V  F  N  R  T  I  D  D  R  I  V  L  V  V  L  G  V  V  T  V  V  S  L  V  L  T  H  V  W  L  N  V  L  V  S  I  V  V  G  I  V  L  I  F  L  H  A  T  F  R  I  T  E  N  L  F  L  E  E  E  D  A  A  D  G  G  L  H  S  F  V  G  T  Y  V  *  F   </first_frame>
            <second_frame>  L  N  V  N  H  S  A  T  L  I  E  *  S  C  V  H  L  M  T  S  L  S  V  G  L  D  P  A  C  L  P  S  M  L  V  V  V  H  G  E  S  Y  *  P  I  R  L  P  I  P  Y  L  F  P  S  A  I  S  H  L  G  *  S  E  I  *  A  T  F  G  S  T  M  R  *  L  Y  W  L  Y  S  S  *  A  F  Y  G  I  Q  F  Q  *  L  C  S  *  S  C  R  *  V  G  I  S  S  T  S  I  A  T  N  R  *  W  F  L  I  V  R  L  M  I  E  L  F  W  L  F  S  E  L  L  Q  W  *  A  W  C  S  L  M  F  G  *  M  C  W  C  R  L  S  *  G  L  C  *  Y  F  C  M  Q  L  L  E  L  Q  R  I  C  F  W  K  K  K  M  P  L  M  V  D  C  T  L  L  L  V  P  M  C  D  F  </second_frame>
            <third_frame>   *  T  *  I  T  V  Q  P  *  L  N  N  H  A  S  I  L  *  L  L  F  Q  S  G  *  I  R  H  A  Y  R  L  C  S  S  S  S  M  E  R  A  I  D  P  S  V  F  L  Y  P  T  Y  F  R  Q  R  F  R  I  S  G  E  A  K  S  E  L  L  S  G  Q  L  C  D  D  C  T  G  C  T  L  L  K  H  F  M  A  S  N  F  N  D  C  V  L  N  R  V  G  R  L  V  F  P  L  L  P  S  R  R  T  V  D  G  F  *  S  Y  D  *  *  *  N  C  S  G  C  S  R  S  C  Y  S  G  E  L  G  A  H  S  C  L  V  E  C  V  G  V  D  C  R  R  D  C  V  D  I  F  A  C  N  F  *  N  Y  R  E  F  V  S  G  R  R  R  C  R  *  W  W  I  A  L  F  C  W  Y  L  C  V  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86877" stop="86341"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMRPSYDFSFSRARSGMLTVYARRRPWRELLTHPSSYTLPISVSDFASRVKRNLSYFRVNYAMIVLVVLFLSILWHPISMIVFLIVSVGWYFLYFHRDEPLMVFNRTIDDRIVLVVLGVVTVVSLVLTHVWLNVLVSIVVGIVLIFLHATFRITENLFLEEEDAADGGLHSFVGTYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="98595" PGL_stop="99808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98595" e_stop="99808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="98595" e_stop="99808" e_length="1214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98595" stop="99808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCTTTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</gDNA_template>
            <first_frame> V  *  W  S  S  S  S  K  *  Q  P  L  L  S  L  S  F  F  V  R  E  L  K  K  I  V  D  *  Y  L  I  L  L  P  L  I  L  C  F  S  F  *  W  S  S  S  S  N  K  M  Q  K  C  I  E  K  K  *  R  *  Q  L  F  F  F  F  E  H  V  K  N  Y  L  W  L  N  K  V  F  S  F  T  P  P  K  P  L  F  S  L  S  I  K  Y  Q  L  Q  P  Y  R  D  *  R  I  *  G  F  V  S  C  L  F  S  F  F  A  Q  C  Y  S  S  A  S  C  L  V  C  C  L  I  D  *  I  T  F  R  S  C  F  V  F  S  G  *  F  Y  L  S  S  V  E  F  L  D  T  P  F  V  S  L  C  C  I  N  W  L  L  V  S  R  L  Y  H  F  Y  L  F  V  V  S  F  C  F  *  N  M  E  E  I  E  E  A  N  R  V  A  V  E  S  C  H  R  V  I  S  K  L  S  Q  P  H  D  E  K  I  L  A  R  E  T  G  E  A  V  H  K  F  K  K  V  V  T  L  L  N  S  N  L  G  H  A  R  V  R  K  T  K  K  I  L  T  P  F  P  H  S  L  L  L  E  N  S  S  C  K  I  V  D  D  Q  L  K  P  L  Q  L  L  P  I  T  Y  P  E  N  I  R  L  E  I  G  S  N  V  N  R  I  H  P  S  L  E  L  N  S  H  S  K  N  P  L  Q  L  A  Q  Q  T  S  Y  H  F  A  Q  Q  Q  Q  Q  Q  R  R  Y  Q  L  Q  Q  Q  A  D  M  M  Y  R  R  S  N  S  G  I  S  L  N  F  D  S  S  T  C  T  P  T  M  S  S  T  R  S  F  I  S  S  L  S  I  D  G  S  V  A  N  L  D  G  N  A  F  H  F  I  G  A  S  R  S  A  D  Q  S  S  V  Q  H  K  K  R  C   </first_frame>
            <second_frame>  S  S  G  V  V  V  V  N  N  N  L  F  S  L  F  L  S  L  S  E  S  *  R  K  L  L  I  N  I  *  Y  Y  Y  H  *  F  S  V  S  L  S  N  G  V  V  V  A  I  K  C  K  S  V  L  K  K  N  K  D  N  S  F  F  F  F  L  N  M  S  K  I  I  F  G  *  T  K  S  S  L  S  H  L  P  N  P  S  S  L  C  L  S  S  I  N  Y  S  P  I  E  I  E  E  S  R  V  L  C  L  V  C  F  L  S  L  L  N  V  I  A  L  L  P  V  L  F  V  V  *  L  I  K  S  P  S  G  H  V  L  F  F  L  V  D  F  T  F  L  Q  L  N  F  S  I  P  L  L  F  L  C  V  V  S  I  G  C  W  Y  L  G  S  T  I  F  I  C  L  L  Y  L  F  V  F  K  I  W  R  R  L  R  K  L  T  E  L  Q  L  R  V  V  I  E  L  L  V  S  Y  L  N  L  M  M  R  K  F  *  Q  E  R  L  E  R  L  F  T  S  L  R  K  W  *  L  S  *  I  L  I  W  V  M  Q  E  *  E  K  P  R  K  F  *  P  L  F  P  I  A  S  C  *  R  I  Q  V  V  K  L  L  M  I  S  L  N  P  Y  N  C  F  L  S  P  I  L  K  I  S  D  *  K  L  V  L  M  *  I  G  F  T  L  H  W  S  *  I  H  I  V  K  I  L  F  S  *  P  N  K  Q  A  I  T  L  P  N  S  S  S  N  R  G  G  I  S  F  S  S  R  R  I  *  C  I  G  V  V  I  V  G  L  V  *  T  L  I  A  L  H  V  L  Q  L  C  H  Q  R  G  R  L  S  P  R  *  V  L  M  E  V  *  L  T  W  M  V  M  P  S  I  L  S  G  L  R  A  P  R  I  R  A  Q  F  N  I  R  K  G  A  </second_frame>
            <third_frame>   L  V  E  *  *  *  *  I  T  T  S  S  L  S  F  F  L  C  Q  R  V  E  E  N  C  *  L  I  F  N  T  T  T  T  D  S  L  F  L  F  L  M  E  *  *  *  Q  *  N  A  K  V  Y  *  K  K  I  K  I  T  A  F  F  F  F  *  T  C  Q  K  L  S  L  A  E  Q  S  L  L  F  H  T  S  Q  T  P  L  L  S  V  Y  Q  V  S  T  T  A  L  *  R  L  K  N  L  G  F  C  V  L  F  V  F  F  L  C  S  M  L  *  L  C  F  L  S  C  L  L  F  D  *  L  N  H  L  Q  V  M  F  C  F  F  W  L  I  L  P  F  F  S  *  I  S  R  Y  P  F  C  F  F  V  L  Y  Q  L  V  V  G  I  *  A  L  P  F  L  S  V  C  C  I  F  L  F  L  K  Y  G  G  D  *  G  S  *  Q  S  C  S  *  E  L  S  *  S  Y  *  *  V  I  S  T  S  *  *  E  N  F  S  K  R  D  W  R  G  C  S  Q  V  *  E  S  G  D  S  L  K  F  *  F  G  S  C  K  S  K  K  N  Q  E  N  S  D  P  F  S  P  *  P  L  V  R  E  F  K  L  *  N  C  *  *  S  A  *  T  L  T  T  A  S  Y  H  L  S  *  K  Y  Q  T  R  N  W  F  *  C  E  *  D  S  P  F  I  G  V  K  F  T  *  *  K  S  S  S  V  S  P  T  N  K  L  S  L  C  P  T  A  A  A  T  E  A  V  S  A  S  A  A  G  G  Y  D  V  S  A  *  *  *  W  D  *  F  K  L  *  *  L  Y  M  Y  S  N  Y  V  I  N  E  V  V  Y  L  L  V  E  Y  *  W  K  C  S  *  L  G  W  *  C  L  P  F  Y  R  G  F  A  L  R  G  S  E  L  S  S  T  *  E  K  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99147" stop="99806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMEEIEEANRVAVESCHRVISKLSQPHDEKILARETGEAVHKFKKVVTLLNSNLGHARVRKTKKILTPFPHSLLLENSSCKIVDDQLKPLQLLPITYPENIRLEIGSNVNRIHPSLELNSHSKNPLQLAQQTSYHFAQQQQQQRRYQLQQQADMMYRRSNSGISLNFDSSTCTPTMSSTRSFISSLSIDGSVANLDGNAFHFIGASRSADQSSVQHKKRC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="100062" PGL_stop="101002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100062" e_stop="100085"/>
            <exon e_start="100476" e_stop="100858"/>
            <exon e_start="100998" e_stop="101002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.464" acc_prob="0.104" e_score="0.961"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100062" e_stop="100085" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100086" i_stop="100475" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="100476" e_stop="100858" e_length="383"/>
          </exon>
          <intron i_serial="2" don_prob="0.464" acc_prob="0.104">
            <gDNA_intron_boundary i_start="100859" i_stop="100997" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="100998" e_stop="101002" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100062" stop="100085"/>
              <exon start="100476" stop="100858"/>
              <exon start="100998" stop="101002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAAAGGTTCTCCGCACCCTAG : GGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAATTGTAAGATTATCCTCATAAA : GAGTA</gDNA_template>
            <first_frame> D  Q  R  F  S  A  P  *  :  G  I  L  Q  V  *  Q  H  E  R  L  S  C  Q  E  A  R  *  E  M  L  G  R  A  I  N  A  Y  C  H  L  R  R  R  T  *  P  S  *  V  A  I  P  I  G  K  C  M  R  S  L  E  K  C  E  Q  R  S  S  S  S  *  A  S  R  N  F  E  Y  S  I  L  N  R  L  Q  L  F  L  Y  I  F  C  F  E  V  Q  C  T  W  G  Q  I  L  V  Q  K  L  E  G  Y  M  E  R  Q  M  *  S  Q  V  N  D  A  V  R  L  *  R  F  P  N  C  K  I  I  L  I  K :   S  </first_frame>
            <second_frame>  I  K  G  S  P  H  P  R :   G  Y  Y  K  C  S  S  M  R  G  C  P  A  R  K  H  V  E  R  C  L  E  E  P  S  M  L  I  V  T  Y  E  G  E  H  N  H  P  R  L  P  S  Q  S  A  N  A  *  D  L  *  R  N  A  N  K  D  H  H  H  H  K  P  R  E  I  S  N  T  L  F  *  T  G  F  N  C  S  C  T  Y  F  A  L  K  C  N  A  H  G  A  K  Y  *  F  K  N  W  K  G  I  W  K  G  K  C  K  A  R  L  M  M  Q  *  D  F  K  G  F  L  I  V  R  L  S  S  *   : R  V </second_frame>
            <third_frame>   S  K  V  L  R  T  L   : G  D  T  T  S  V  A  A  *  E  A  V  L  P  G  S  T  L  R  D  A  W  K  S  H  Q  C  L  L  S  L  T  K  E  N  I  T  I  L  G  C  H  P  N  R  Q  M  H  E  I  F  R  E  M  R  T  K  I  I  I  I  I  S  L  E  K  F  R  I  L  Y  F  K  P  A  S  I  V  P  V  H  I  L  L  *  S  A  M  H  M  G  P  N  T  S  S  K  I  G  R  V  Y  G  K  A  N  V  K  P  G  *  *  C  S  E  T  L  K  V  S  *  L  *  D  Y  P  H  K  :  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100502" stop="100729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAVLPGSTLRDAWKSHQCLLSLTKENITILGCHPNRQMHEIFREMRTKIIIIISLEKFRILYFKPASIVPVHILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="103661" PGL_stop="104055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103661" e_stop="104055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="103661" e_stop="104055" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103661" stop="104055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAATGGCTGTAATGATCGAGAAATTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGTTGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAATGGGCAGAAGTCAGAACATGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  V  F  Q  M  A  V  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  K  N  V  E  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  H  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  F  F  K  W  L  *  *  S  R  N  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  K  M  L  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  M  G  R  S  Q  N  M  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  N  G  C  N  D  R  E  I  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  *  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  W  A  E  V  R  T  C  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103661" stop="104053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEVFQMAVMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNKNVEKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEHAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="116239" PGL_stop="115816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116239" e_stop="115816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="116239" e_stop="115816" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116239" stop="115816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATACAAAGAGTGTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAGCAGTTTTTCACAGTCAAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTATCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTAAAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGAGTTTTTCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> *  I  Q  R  V  F  F  S  S  Q  K  E  R  K  R  A  V  F  H  S  Q  I  S  A  I  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  Y  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  K  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </first_frame>
            <second_frame>  K  Y  K  E  C  F  S  A  A  K  K  R  E  R  E  Q  F  F  T  V  K  F  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  C  S  F  S  F  A  I  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  K  L  L  V  P  W  F  F  T  L  H  I  E  E  F  F  T  *  I  L  V </second_frame>
            <third_frame>   N  T  K  S  V  F  Q  Q  P  K  R  E  K  E  S  S  F  S  Q  S  N  F  S  H  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  *  S  F  W  S  R  G  F  L  L  F  T  S  K  S  F  S  R  K  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 48 chains have been computed
$ 
$ memory statistics:
$ 104344 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 6137 bytes was the average size of a spliced alignment
$ 20960 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1612 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 57 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-19 20:31:07
-->
