<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 01:51:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0130H12-hMwNC/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-6oTuLl/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-6oTuLl/sgn_marker_seqs" ref_id="SGN-M548-R" ref_strand="+" ref_description="SGN-M548-R CT225-R [rflp_markers_reverse]">
      <seq>acatcttggttgtgttgctcagcactttggacatggttagtcactggatttgcaaggaattgaagttctgagcagtaagaagccattgcaatttcagctcccttgagtccataatccaagcttggattccttcctgctgtgagattagatggcaacccattgttgtaatagtcgttgacaagttccgaaaattgggcaaacatcaatttcccaatagatgcaagggccaatcttgtattatccatggacacaccaataggggtaccttggaagtttccaccgtgtaaggccttgtttcttgaaacatcgatcaatgggttgtcgttcactgagttaatctctctctcaatcatcttagttgctgcacggatgacttcaatttgaggtccaagccactgtggagatgttcgaagagcataacgatcttgcttcggtttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-hMwNC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0130H12.2" temp_strand="+" temp_description="C09SLe0130H12.2  EF576814.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576814.1| upload_account_name:spain (1 - 83892)">
        <position start="20988" stop="22028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21288" g_stop="21728" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.2" gen_strand="+" ref_id="SGN-M548-R" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M548-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21288" e_stop="21728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGA</genome_strand>
        <mrna_strand>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTCGGTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-6oTuLl/sgn_marker_seqs" ref_id="SGN-M548-R" ref_strand="+" ref_description="SGN-M548-R CT225-R [rflp_markers_reverse]">
      <seq>acatcttggttgtgttgctcagcactttggacatggttagtcactggatttgcaaggaattgaagttctgagcagtaagaagccattgcaatttcagctcccttgagtccataatccaagcttggattccttcctgctgtgagattagatggcaacccattgttgtaatagtcgttgacaagttccgaaaattgggcaaacatcaatttcccaatagatgcaagggccaatcttgtattatccatggacacaccaataggggtaccttggaagtttccaccgtgtaaggccttgtttcttgaaacatcgatcaatgggttgtcgttcactgagttaatctctctctcaatcatcttagttgctgcacggatgacttcaatttgaggtccaagccactgtggagatgttcgaagagcataacgatcttgcttcggtttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-hMwNC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0130H12.2" temp_strand="-" temp_description="C09SLe0130H12.2  EF576814.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576814.1| upload_account_name:spain (1 - 83892)">
        <position start="37711" stop="36671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37411" g_stop="36971" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.2" gen_strand="-" ref_id="SGN-M548-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M548-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37411" e_stop="36971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGA</genome_strand>
        <mrna_strand>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTCGGTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-6oTuLl/sgn_marker_seqs" ref_id="SGN-M7424" ref_strand="-" ref_description="SGN-M7424 C2_At2g37025 [cosii_markers]">
      <seq>atgcatctgatgcgatacttgttttcaaacctcacaaggaggagcctcctcataaggaggctactacagttgtgaatcataaagatgatgatgttacaccaaagaagttggtacaagatggtgtgcggaggaaacatcacaggctctggactgtttcagaggttagaaagttgattgatggagttgcccaatatggagttggaagatggagtcacataaagaagctctatttctcatcatctgttcatagaacacctgtggatctcaaggataaatggaggaatcttcttaaagcaacttatctacagaaacaaagcaaatcaacggaaaagggtaaacataacctgtcttggcgacctttgccaaagtctgtcctgcatcgagtcagtgaactggcgaacatgcatccatatccaagaaaccggaggtgcaagagttcccgttctccatgtgcctcatcttctcctgagcattctaacagttctaacaccccgtgacgaccccacctgtgatattcctctcctatgcatagttacaggagtaacatctggtaataacccgatttttacgttcaaatattggcttttagctctcttataccaactcgctgcatagttcgtgtatagagcagcttcatttcaagtgaaaagaaggttctgtataatttttcgttacctctagaaatgcaatcgtcacatctgtaaacttttttttttgtatttccaattgatacaagtgcttatgtttcagcattttgtgtatatgaagtagtttgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-hMwNC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0130H12.2" temp_strand="-" temp_description="C09SLe0130H12.2  EF576814.1 htgs_phase:1 submitted_to_sgn_as:gb|EF576814.1| upload_account_name:spain (1 - 83892)">
        <position start="63770" stop="9685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63470" g_stop="63451" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63450" i_stop="62845" i_length="606">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62844" g_stop="62596" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="269" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62595" i_stop="62474" i_length="122">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62473" g_stop="62417" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="326" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62416" i_stop="61639" i_length="778">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61638" g_stop="61186" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="779" r_length="453" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61185" i_stop="60377" i_length="809">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60376" g_stop="60361" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="795" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.2" gen_strand="-" ref_id="SGN-M7424" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63470" e_stop="63451"/>
          <exon e_start="62844" e_stop="62596"/>
          <exon e_start="62473" e_stop="62417"/>
          <exon e_start="61638" e_stop="61186"/>
          <exon e_start="60376" e_stop="60361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATCTGATGCGATACAGGTACACTCCAAAATAAATTTGAAACAAAATTTATAATTTCATTTATGTGATCCTTGCACTGCATCCATGTATGAGCACATTGAAGGTGTTCTTAGTAGGCTAGTTTTATAATCTCGGTTGTGCAAGTCGGTTCACAAATAACATTTAACCAACCAATCTTTGTTGACAACTTGTTCAAAACTCAAAATGAATGAGAGTCTCTGTAATACTATGCTTGCTTGAACTTTTTTTTTGGACGACAAGGGAAACCCGCAGCCGCTACCCTTTATGGGTGCACACAGGTAAAACCCTGCTCCTATGCAATAGCTCGCAAACCTCATAGGAGAGATAACCCGCACTAGGCAAGCCTAGTGCGACGAGCTCGAACCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACGTGGAAGTCCCAAGGTGGTAAGTTCAGGTACTTTTTGAAACAAGGGTGATCTTCCATGCCAATTTGTTATTGAGCATATCACGATACTCTACATACCTACCCCCGATCTTTTTGCAACTTTTTAGTAACGTTTTAATCTTCAGTTAGTATTTTCCTTAACATAAAAGTTGATCTCCTTGAAGGTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAGGTAAGCACAATGGCCACTATCAGGCATTCTTCAACCAGACGAGTCAAGAAACACCATGCATCATCTAGTGTTTGCATGCTACTTACCTAAAGTCGGCACTCTGTTGCTCATACGTCTTGCAGGATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACGGTGAGTATTTATTTGAATTTGATTAATAATGCTTGATGTTTGCTGTGAATCATCAATTATGAGCCTTTTAAACTTGATGCAATAGTTTCTTGCTGTTCTGTTATAGAATTACTTTGTATGTATAGCCATCATACATTCTGCGGACATGACCCTAGATAAGAAGTTTTGGAGGCTGATGAGATTAGGGTAGAAGAGTAATAGGTAGCAACGTGTTGTAGCACTTTTCTGGGGGAGAAGCAGGGAACTGGTCTCTTTTTCTCATCTTTTAGTATTCTTATCTGGTATGCACATAGTATCTTATTTTTCAGTTTTACTACTACAGCTTACTTCAATTACAGATTACCCTCCCCGGACCCTCCACTTGTGGGATTACATAGGGTATGTTGTTGTATAGCCATCATATTTTTATTTGTTTTGAAATTTTTTTGTTTGTGTTTGTGCGCACTAGAGTCAATAGTAATACTAAATTATGTTGGTGAAATCAGATTGTTGTATAGTGGAGTGTAATTTGAGTATAATTTCTGCTCAACTTATTTATTCATGTTTCGTTGCATTTTCGGTTTCAAGTAGCATGAGTCGATCTCGTCAAAGTTAGTAGGAAGCTTAACACACAAGAATCTATAATATATGCTGGTTTTGGTATATGTTGTTTAGTCTAGCCACTTCGTTTGATGGATAATATAGCAACATGGAGTGCTTGACATTGTTCAAACTTCTCCCTTATTCCAGAGAGCTTACTTTTCTCATATGATATTTGACCCGATTATCATTGATGCAGGAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGACGTCGCGCTGATTCCTCCTTTACTGCTTCAAAAATTTTGTGGAGAGATTTGCAACATAAGGGAAATTGATTTGTGGTAACATTCTTTGCTCAGTATTCCACATAAAAGTACCAATTTTTTGGAAATGGGAAGTTGGATTGAAAGGACTCTAACATATCGAGATGTAGACTCGTTTTTCGCGCCCCGAGATGGGCAATTTGTTAACCCTATTTAGACCTTTGGTTAATTGATTAAGGAAAAGATTCACAACCAGGGTGGAAAAGAATAAAGTATACGCAAATTTTATTTCTATTTTTTACGAGGACAAGTAAGGAGTAAAACACTTACTATTAAGATTCACAAATTTACATCGAGTAGGTGCATTAGAGATAAAGCGCTCCCTTCGCGTTTAATATTACATAGAACGGAAGGTAGACAAACACACATACATAGTTTCTAATACGTATAACATCATTATTCATAGTTGCAAGACATGCAAAGCTCAACCTCTTCCGTTATCACTATTATCACCAGCACCACCACTATCACCAGAAGAGTTATCTCCTCTCTGACCGAAATATTCTCTTGGTATGTTATGATGATTATCTACATCGCGATCGGGGTATATATACTTTTTCCTTGCACCAAATCCAACTCCATAGTCCATTACATGTTCTTCAAGTCCCTCTCCTCCAATTAAGGCTTTTCTAGGATATGCATCTCCCAAACAAGAACAAAACATGATTATAATCAACATAAACACTAATAATTTCCTCATATTGAAACACAATAACTTCATATATATGGCACAACTCCCAAAAAGAAAGAAAGGATAAGAAAGAAAATA</genome_strand>
        <mrna_strand>ATGCATCTGATGCGATACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG..........................................................................................................................GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="21288" PGL_stop="21728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21288" e_stop="21728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="21288" e_stop="21728" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21288" stop="21728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M548-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGA</gDNA_template>
            <first_frame> T  S  W  L  C  C  S  A  L  W  T  W  L  V  T  G  F  A  R  N  *  S  S  E  Q  *  E  A  I  A  I  S  A  P  L  S  P  *  S  K  L  G  F  L  P  A  V  R  L  D  G  N  P  L  L  *  *  S  L  T  S  S  E  N  W  A  N  I  N  F  P  I  D  A  R  A  N  L  V  L  S  M  E  T  P  I  G  V  P  W  K  F  P  P  C  K  A  L  F  L  E  T  S  I  N  G  L  S  F  T  E  L  I  S  L  S  I  I  L  V  A  A  R  M  T  S  I  *  G  P  S  H  C  G  D  V  R  R  A  *  R  S  C  F  G  F  * </first_frame>
            <second_frame>  H  L  G  C  V  A  Q  H  F  G  H  G  *  S  L  D  L  Q  G  I  E  V  L  S  S  K  K  P  L  Q  F  Q  L  P  *  V  H  N  P  S  L  D  S  F  L  L  *  D  *  M  A  T  H  C  C  N  S  R  *  Q  V  P  K  I  G  Q  T  S  I  S  Q  *  M  Q  G  P  I  L  Y  Y  P  W  R  H  Q  *  G  Y  L  G  S  F  H  R  V  R  P  C  F  L  K  H  R  S  M  G  C  R  S  L  S  *  S  L  S  Q  S  S  *  L  L  H  G  *  L  Q  F  E  V  Q  A  T  V  E  M  F  E  E  H  N  D  L  A  L  V  F   </second_frame>
            <third_frame>   I  L  V  V  L  L  S  T  L  D  M  V  S  H  W  I  C  K  E  L  K  F  *  A  V  R  S  H  C  N  F  S  S  L  E  S  I  I  Q  A  W  I  P  S  C  C  E  I  R  W  Q  P  I  V  V  I  V  V  D  K  F  R  K  L  G  K  H  Q  F  P  N  R  C  K  G  Q  S  C  I  I  H  G  D  T  N  R  G  T  L  E  V  S  T  V  *  G  L  V  S  *  N  I  D  Q  W  V  V  V  H  *  V  N  L  S  L  N  H  L  S  C  C  T  D  D  F  N  L  R  S  K  P  L  W  R  C  S  K  S  I  T  I  L  L  W  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21359" stop="21574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVRSHCNFSSLESIIQAWIPSCCEIRWQPIVVIVVDKFRKLGKHQFPNRCKGQSCIIHGDTNRGTLEVSTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21459" stop="21671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTSSENWANINFPIDARANLVLSMETPIGVPWKFPPCKALFLETSINGLSFTELISLSIILVAARMTSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="37411" PGL_stop="36971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37411" e_stop="36971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="37411" e_stop="36971" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37411" stop="36971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M548-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGA</gDNA_template>
            <first_frame> T  S  W  L  C  C  S  A  L  W  T  W  L  V  T  G  F  A  R  N  *  S  S  E  Q  *  E  A  I  A  I  S  A  P  L  S  P  *  S  K  L  G  F  L  P  A  V  R  L  D  G  N  P  L  L  *  *  S  L  T  S  S  E  N  W  A  N  I  N  F  P  I  D  A  R  A  N  L  V  L  S  M  D  T  P  I  G  V  P  W  K  F  P  P  C  K  A  L  F  L  E  T  S  I  N  G  L  S  F  T  E  L  I  S  L  S  I  I  L  V  A  A  R  M  T  S  I  *  G  P  S  H  C  G  D  V  R  R  A  *  R  S  C  F  G  F  * </first_frame>
            <second_frame>  H  L  G  C  V  A  Q  H  F  G  H  G  *  S  L  D  L  Q  G  I  E  V  L  S  S  K  K  P  L  Q  F  Q  L  P  *  V  H  N  P  S  L  D  S  F  L  L  *  D  *  M  A  T  H  C  C  N  S  R  *  Q  V  P  K  I  G  Q  T  S  I  S  Q  *  M  Q  G  P  I  L  Y  Y  P  W  T  H  Q  *  G  Y  L  G  S  F  H  R  V  R  P  C  F  L  K  H  R  S  M  G  C  R  S  L  S  *  S  L  S  Q  S  S  *  L  L  H  G  *  L  Q  F  E  V  Q  A  T  V  E  M  F  E  E  H  N  D  L  A  L  V  F   </second_frame>
            <third_frame>   I  L  V  V  L  L  S  T  L  D  M  V  S  H  W  I  C  K  E  L  K  F  *  A  V  R  S  H  C  N  F  S  S  L  E  S  I  I  Q  A  W  I  P  S  C  C  E  I  R  W  Q  P  I  V  V  I  V  V  D  K  F  R  K  L  G  K  H  Q  F  P  N  R  C  K  G  Q  S  C  I  I  H  G  H  T  N  R  G  T  L  E  V  S  T  V  *  G  L  V  S  *  N  I  D  Q  W  V  V  V  H  *  V  N  L  S  L  N  H  L  S  C  C  T  D  D  F  N  L  R  S  K  P  L  W  R  C  S  K  S  I  T  I  L  L  W  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37340" stop="37125"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVRSHCNFSSLESIIQAWIPSCCEIRWQPIVVIVVDKFRKLGKHQFPNRCKGQSCIIHGHTNRGTLEVSTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37240" stop="37028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTSSENWANINFPIDARANLVLSMDTPIGVPWKFPPCKALFLETSINGLSFTELISLSIILVAARMTSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="63470" PGL_stop="60361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63470" e_stop="63451"/>
            <exon e_start="62844" e_stop="62596"/>
            <exon e_start="62473" e_stop="62417"/>
            <exon e_start="61638" e_stop="61186"/>
            <exon e_start="60376" e_stop="60361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="0.900"/>
          <exon-intron don_prob="0.835" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="63470" e_stop="63451" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="63450" i_stop="62845" i_length="606"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62844" e_stop="62596" e_length="249"/>
          </exon>
          <intron i_serial="2" don_prob="0.835" acc_prob="0.957">
            <gDNA_intron_boundary i_start="62595" i_stop="62474" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62473" e_stop="62417" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.888">
            <gDNA_intron_boundary i_start="62416" i_stop="61639" i_length="778"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="61638" e_stop="61186" e_length="453"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61185" i_stop="60377" i_length="809"/>
          </intron>
          <exon e_serial="5" e_score="0.688">
            <gDNA_exon_boundary e_start="60376" e_stop="60361" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63470" stop="63451"/>
              <exon start="62844" stop="62596"/>
              <exon start="62473" stop="62417"/>
              <exon start="61638" stop="61186"/>
              <exon start="60376" stop="60361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7424" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCATCTGATGCGATACAG : GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG : GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG : GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAC : GATAAGAAAGAAAATA</gDNA_template>
            <first_frame> M  H  L  M  R  Y  R :   F  S  N  L  T  R  R  S  L  L  I  R  R  L  L  Q  L  *  I  I  K  M  M  M  L  H  Q  R  S  W  Y  K  M  V  C  G  G  N  I  T  G  S  G  L  F  Q  R  L  E  S  *  L  M  E  L  P  N  M  E  L  E  D  G  V  T  *  R  S  S  I  S  H  H  L  F  I  E  H  L  W  I  S  R :   I  N  G  G  I  F  L  K  Q  L  I  Y  R  N  K  A  N  Q  R :   K  R  V  N  I  T  C  L  G  D  L  C  Q  S  L  S  C  I  E  S  V  N  W  R  T  C  I  H  I  Q  E  T  G  G  A  R  V  P  V  L  H  V  P  H  L  L  L  S  I  L  T  V  L  T  P  R  D  D  P  T  C  D  I  P  L  L  C  I  V  T  G  V  T  S  G  N  N  P  I  F  T  F  K  Y  W  L  L  A  L  L  Y  Q  L  A  A  *  F  V  Y  R  A  A  S  F  Q  V  K  R  R  F  C  I  I  F  R  Y  L  *  K  C  N  R  H  I  C  K  L  F  F  L  Y  F  Q  L  I  Q  V  L  M  F  Q  H  F  V  Y  M  K  *  F  V  T :   I  R  K  K  I </first_frame>
            <second_frame>  C  I  *  C  D  T   : G  F  Q  T  S  Q  G  G  A  S  S  *  G  G  Y  Y  S  C  E  S  *  R  *  *  C  Y  T  K  E  V  G  T  R  W  C  A  E  E  T  S  Q  A  L  D  C  F  R  G  *  K  V  D  *  W  S  C  P  I  W  S  W  K  M  E  S  H  K  E  A  L  F  L  I  I  C  S  *  N  T  C  G  S  Q   : G  *  M  E  E  S  S  *  S  N  L  S  T  E  T  K  Q  I  N   : G  K  G  *  T  *  P  V  L  A  T  F  A  K  V  C  P  A  S  S  Q  *  T  G  E  H  A  S  I  S  K  K  P  E  V  Q  E  F  P  F  S  M  C  L  I  F  S  *  A  F  *  Q  F  *  H  P  V  T  T  P  P  V  I  F  L  S  Y  A  *  L  Q  E  *  H  L  V  I  T  R  F  L  R  S  N  I  G  F  *  L  S  Y  T  N  S  L  H  S  S  C  I  E  Q  L  H  F  K  *  K  E  G  S  V  *  F  F  V  T  S  R  N  A  I  V  T  S  V  N  F  F  F  C  I  S  N  *  Y  K  C  L  C  F  S  I  L  C  I  *  S  S  L  *   : R  *  E  R  K   </second_frame>
            <third_frame>   A  S  D  A  I  Q  :  V  F  K  P  H  K  E  E  P  P  H  K  E  A  T  T  V  V  N  H  K  D  D  D  V  T  P  K  K  L  V  Q  D  G  V  R  R  K  H  H  R  L  W  T  V  S  E  V  R  K  L  I  D  G  V  A  Q  Y  G  V  G  R  W  S  H  I  K  K  L  Y  F  S  S  S  V  H  R  T  P  V  D  L  K  :  D  K  W  R  N  L  L  K  A  T  Y  L  Q  K  Q  S  K  S  T  :  E  K  G  K  H  N  L  S  W  R  P  L  P  K  S  V  L  H  R  V  S  E  L  A  N  M  H  P  Y  P  R  N  R  R  C  K  S  S  R  S  P  C  A  S  S  S  P  E  H  S  N  S  S  N  T  P  *  R  P  H  L  *  Y  S  S  P  M  H  S  Y  R  S  N  I  W  *  *  P  D  F  Y  V  Q  I  L  A  F  S  S  L  I  P  T  R  C  I  V  R  V  *  S  S  F  I  S  S  E  K  K  V  L  Y  N  F  S  L  P  L  E  M  Q  S  S  H  L  *  T  F  F  F  V  F  P  I  D  T  S  A  Y  V  S  A  F  C  V  Y  E  V  V  C  D  :  D  K  K  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63468" stop="63451"/>
                    <exon start="62844" stop="62596"/>
                    <exon start="62473" stop="62417"/>
                    <exon start="61638" stop="61468"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASDAIQVFKPHKEEPPHKEATTVVNHKDDDVTPKKLVQDGVRRKHHRLWTVSEVRKLIDGVAQYGVGRWSHIKKLYFSSSVHRTPVDLKDKWRNLLKATYLQKQSKSTEKGKHNLSWRPLPKSVLHRVSELANMHPYPRNRRCKSSRSPCASSSPEHSNSSNTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 107224 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 35741 bytes was the average size of a spliced alignment
$ 8008 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2669 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 25 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 01:51:25
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