<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 09:08:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479414" ref_strand="+" ref_description="SGN-E479414 [cSTD-9-F12]">
      <seq>tggtaccacccacgcttgcagatctgtaccaaccgccaagctctggcatcagctctctctcaagcctcgaacaagttcgttgctctcgctgtttttcaggctggtgaaaccgttgataccagctgtatcacaatttcattactgattttgagaccaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagaatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtcagcattattgggagacaacatatacaattttggggagctacttgctcatcctattatnaagaggtttggttgggacacaagttgaatggctatatcatatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="484" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="550" r_length="482" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="631" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2472" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="681" r_length="50" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E479414" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACAC-GTTGATA-CAGCTGTATCACAATTTCATCACTGATTTTGAGAC-AAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAG-ATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGA-GTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTG</genome_strand>
        <mrna_strand>GAACAAGTT-CG-TTGCTCTCGCTGTTTT--TC--AGGCTGGTGAAACCGTTGATACCAGCTGTATCACAATTTCATTACTGATTTTGAGACCAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGAATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCAGCATTATTGGGAGACAACATATACAATTTTGGGGAGCTACTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATNAAGAGGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578894" ref_strand="+" ref_description="SGN-E578894 [86016]">
      <seq>gaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8" g_stop="397" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E578894" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8" e_stop="397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACG</genome_strand>
        <mrna_strand>GAACAGTTCGTTGCTCTCGCTGTTTTTCAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542646" ref_strand="+" ref_description="SGN-E542646 [TUS-64-A21]">
      <seq>acagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcacattctgtgcttgatggaaatcatcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10" g_stop="484" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="556" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="752" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E542646" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG</genome_strand>
        <mrna_strand>ACAGTTTGTCGCTCTCGCTGTTTTTCAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATC-ACATTCTGTGCTTGATGGAAATCATCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561637" ref_strand="+" ref_description="SGN-E561637 [17874]">
      <seq>acagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatgggctatatcatatcccttgaaggcattcaaccactggtgatttagctcgttatcaagaattgtgcccggtcccatcaagctgctttaagtgctcaaccagcatgggtgcaaaaacgagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10" g_stop="484" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="557" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2573" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="713" r_length="156" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E561637" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAG-AACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAAT-GGCTATATCATAT-CCTTGAA-GCATTCAA-CACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGT-CCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGC-AGAACGAGAAAAAG</genome_strand>
        <mrna_strand>ACAGTTCGTTGCTCTCGCTGTTTTTCAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGGCTATATCATATCCCTTGAAGGCATTCAACCACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCCGGTCCCATCAAGCTGCTTTAAGTGCTCAACCAGCATGGGTGCAAAAACGAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301615" ref_strand="+" ref_description="SGN-E301615 [cLEW-23-E1]">
      <seq>cagtttgttgctctcgctgtttttcaggctggtgacacggtgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaagagtagcagagaagctccaaaatacttaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaagggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactatggggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtgcgatttgtccttgtctgctttactgggagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="1428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11" g_stop="484" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1128" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="519" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E301615" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11" e_stop="484"/>
          <exon e_start="1084" e_stop="1128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAAC</genome_strand>
        <mrna_strand>CAGTTTGTTGCTCTCGCTGTTTTTCAGGCTGGTGACACGGTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAAGAGTAGCAGAGAAGCTCCAAAATACTTAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAAGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATGGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTGCGATTTGTCCTTGTCTGCTTTACTGGGAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411999" ref_strand="+" ref_description="SGN-E411999 [STM-15-H17]">
      <seq>gttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagctcgttatcaagaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgntgcaaaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49" g_stop="484" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="714" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2706" g_stop="2714" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="723" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E411999" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGC</genome_strand>
        <mrna_strand>GTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGNTGCAAAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469917" ref_strand="+" ref_description="SGN-E469917 [cSTB-15-J3]">
      <seq>gttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagctcgttatcaagaattgtgccgtgtccatcaagctgctttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49" g_stop="484" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2543" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="637" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E469917" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCT</genome_strand>
        <mrna_strand>GTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561140" ref_strand="+" ref_description="SGN-E561140 [17085]">
      <seq>ctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtcagcattattgggagacaacatatacaattttggggagctacttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcattatcaagaattgtgccgtgtccatcaagctgctttaagttgctcaaacaagcattgttgcagaacgaagaaaaatcttctcgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="2884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59" g_stop="484" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="507" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2584" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="671" r_length="164" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E561140" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAG-TGCTC-AACCAGCATTATTGCAGAACG-AGAAAAAGCTTCTCGAGAA</genome_strand>
        <mrna_strand>CTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCAGCATTATTGGGAGACAACATATACAATTTTGGGGAGCTACTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCATTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTTGCTCAAACAAGCATTGTTGCAGAACGAAGAAAAATCTTCTCGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339828" ref_strand="+" ref_description="SGN-E339828 [cTOF-3-E1]">
      <seq>ctcgtgccgatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="3049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162" g_stop="484" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="404" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="601" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2706" g_stop="2749" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="645" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E339828" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAG</genome_strand>
        <mrna_strand>CTCGTGCCGATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700977" ref_strand="+" ref_description="SGN-E700977 [FA14CG07]">
      <seq>ccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="1" stop="4075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="255" g_stop="484" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="311" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="508" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="608" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3521" g_stop="3775" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="863" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E700977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="255" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</genome_strand>
        <mrna_strand>CCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590127" ref_strand="-" ref_description="SGN-E590127 [43716]">
      <seq>aggagtttgcagagttttacaaaagtgccctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcatttgatttgtccttgtcagcattactgggagacaacgtatacaattttggggagctgcttgctcatcctataataaagagtttggtagggacacaagtcgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaggaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgttgcagaacgagaaaaagcttcttgagaagatcaacattctatgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcacttcctggtccctgcaacactccgatttcttcgtcctctcttttttgctgtccttattagagcttgtaacacaagcagaggaagtagggagacatttgtttagtttctcatgcctacactctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="102" stop="4151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="402" g_stop="484" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1084" g_stop="1164" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="164" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="361" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="461" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3521" g_stop="3849" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="790" r_length="329" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E590127" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590127" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="402" e_stop="484"/>
          <exon e_start="1084" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAA-CAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCT</genome_strand>
        <mrna_strand>AGGAGTTTGCAGAGTTTTACAAAAGTGCCCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCATTTGATTTGTCCTTGTCAGCATTACTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTCGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAGGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTGCAGAACGAGAAAAAGCTTCTTGAGAAGATCAACATTCTATGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAACACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATTAGAGCTTGTAACACAAGCAGAGGAA-GTAGGGAGACATTTGTTTAG-TTTCTCATGCCTACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542645" ref_strand="+" ref_description="SGN-E542645 [TUS-64-A21](-)">
      <seq>atttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtgcttacgagagcttgtaacacaacagaggaattttgtgagacatttgtttagttttctcaggcctacactctgtactgtggcttatatcccaaatcattgatctgtcactgttttctggaaaaaaaaaaaaataagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="797" stop="4197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1097" g_stop="1164" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="265" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="365" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3521" g_stop="3896" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="741" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="757"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E542645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1097" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGG</genome_strand>
        <mrna_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449002" ref_strand="+" ref_description="SGN-E449002 [cSTS-5-G7]">
      <seq>atttgtccttgtcagcattactgggagacaacgtatacaattttggggagctgcttgctcatcctataataaagagtttggtagggacacaagtcgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaggaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgttgcagaacgagaaaaagcttcttgagaagatcaacattctatgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgngttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcactttctggtccctgcaacactnncgattcttcgtcctctcttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="797" stop="4075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1097" g_stop="1164" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2424" g_stop="2620" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="265" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="365" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3521" g_stop="3775" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="621" r_length="256" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E449002" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1097" e_stop="1164"/>
          <exon e_start="2424" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</genome_strand>
        <mrna_strand>ATTTGTCCTTGTCAGCATTACTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTCGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAGGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTGCAGAACGAGAAAAAGCTTCTTGAGAAGATCAACATTCTATGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGNGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTTCTGGTCCCTGCAACACTNNCGATTCTTCGTCCTCTCTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352152" ref_strand="+" ref_description="SGN-E352152 [cTOS-13-O13]">
      <seq>aatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtgcttacgagagcttgtaacacaacagaggaattttgtgagacatttgtttagttttctcaggcctacactctgtactgtggcttatatcccaaatcattgatctgtcactgttttctggatttaggtgcttgttcagtcaccactttgtagtctatagactactatagcgacgacatcgtcttaacggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="2152" stop="4268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2452" g_stop="2620" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="269" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3521" g_stop="3968" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="717" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E352152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2452" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</genome_strand>
        <mrna_strand>AATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603141" ref_strand="-" ref_description="SGN-E603141 [56223]">
      <seq>gatttaggtcattatccagaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgtttgcagaacgagaaaaatcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccggcagaggatagaactattccattgagtgccattgcagagcgcactaagcttagtgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagacaattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcataatctttagtttcccagtttgcacttcctggtgcctgcaacactccgatttcttcgtcctctcttttttgctgtccttatgagagcttgtaacacaacagaggaagtagggagacatttgtttagtttctcaggcgtacactctatgctgtggcttttatcccaaatcattgatctgtcactgttttctggatttaggtgcttgttctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="2190" stop="4217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2490" g_stop="2620" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2706" g_stop="2805" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="232" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715">
            <donor d_prob="0.682" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3521" g_stop="3918" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="629" r_length="397" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E603141" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603141" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2490" e_stop="2620"/>
          <exon e_start="2706" e_stop="2805"/>
          <exon e_start="3521" e_stop="3918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATT-ATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCAC</genome_strand>
        <mrna_strand>GATTTAGGTCATTATCCAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTTGCAGAACGAGAAAAATCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCGGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAGCTTAGTGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTGCCTGCAACACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATGAGAGCTTGTAACACAACAGAGGAA-GTAGGGAGACATTTGTTTAG-TTTCTCAGGCGTACACTCTATGCTGTGGCTTTTATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584421" ref_strand="+" ref_description="SGN-E584421 [10247]">
      <seq>tctgataagggaataatcgatcagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtccttatgagagcttgtaacacaacagaggaagtagggagacatttatttagtttctcaggcgtacactctatactgtggcttatatcccaaatcattgatctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="3226" stop="4184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3526" g_stop="3884" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E584421" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3526" e_stop="3884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTC</genome_strand>
        <mrna_strand>TCTGATA-AGGGAATAATCGATC-AGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATGAGAGCTTGTAACACAACAGAGGAA-GTAGGGAGACATTTATTTAG-TTTCTCAGGCGTACACTCTATACTGTGGCTTATATCCCAAATCATTGATCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426543" ref_strand="-" ref_description="SGN-E426543 [STM-46-B22]">
      <seq>gctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaggggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgatttctcttcttcagatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagagggagaacgaaggaaaataaccaaaccatttttggtggaagcaaaacaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgaccaaatgataagcacgaggagcaagacgaaagcagaagtagtttcagacttgaagaatcacaattcatgtcaaaacagacatcatatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacatgtggaaataagggctcaaaagagacggatgatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatccaagtcgaagaacacaccttcaagaaggcgatcaacatcctgttcgttcaaaagtaaaacagtaagcagggctaagtagtcagcccattctagcctgcatatactaattcgaaaagtttgtgagtgatgctactctagttgacaaaagttataactaaacttgaaaactcttcaaagagaaaccttattgagtttgattgactcatcctcggtagtgaaaaattctgcatttccccatttagttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="9696" stop="5902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9396" g_stop="9357" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="157" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="238" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7521" g_stop="7423" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6656" g_stop="6244" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="747" r_length="410" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E426543" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9396" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7423"/>
          <exon e_start="6656" e_stop="6244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGACGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGGTATGTAGTCAACTCATACTAGCCTGCATATTATAGTAATTCGAAAAGTTTGTGAGGTGATGCTACTCTACTTGACCAAAGTTATAACTTAACTTG-AAACTCTTTAAACAGAAACCTTATTAA</genome_strand>
        <mrna_strand>GCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAGGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGATTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAG...........................................................................GGAGAACGAAGGAAAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGACCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGTAGTTTCAGACTTGAAGAATCACAATTCATGTCAAAACAGACATCATATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACATGTGGAAATAAGGGCTCAAAAGAGACGGATGATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGGCGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGCTAAGTAGTCAGCCCATTCTAGCCTGC--A-TATACTAATTCGAAAAGTTTGTGA-GTGATGCTACTCTAGTTGACAAAAGTTATAACTAAACTTGAAAACTCTTCAAAGAGAAACCTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711074" ref_strand="+" ref_description="SGN-E711074 [FA57DG05]">
      <seq>gacctctcatacaaacaatattgttaaaagaataggaaaagaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgcattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataatcaaagcatttttggtggaagcaaaccaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagacttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacaagtggaaataagtgctcaaaagagaccgataatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10063" stop="6133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9763" g_stop="9516" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="299" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="416" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="497" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7521" g_stop="7423" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="596" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6656" g_stop="6433" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="820" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E711074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9763" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7423"/>
          <exon e_start="6656" e_stop="6433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGT</genome_strand>
        <mrna_strand>GACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGCATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAATCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688076" ref_strand="+" ref_description="SGN-E688076 [T3_tus_85_I05]">
      <seq>cacaatttggcccttttgacctctcatacaaacaatattgttaaaagaataggaaaagaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataaccaaagcatttttggtggaagcaaaccaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagacttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacaagtggaaataagtgctcaaaagagaccgataatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10080" stop="6137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9780" g_stop="9516" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="433" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7521" g_stop="7423" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="613" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6656" g_stop="6437" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="833" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E688076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9780" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7423"/>
          <exon e_start="6656" e_stop="6437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</genome_strand>
        <mrna_strand>CACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601861" ref_strand="+" ref_description="SGN-E601861 [54910]">
      <seq>gatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagaggttacatacttctttaacaactttttgttaccactcactttgcaagtggattgactttcactcggttgattggcagggagaacgaaggaaaataaccaaaccatttttggtggaagcaaaacaaatacaagggccacttcagtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaaggtgaaagcagaagtagtttcagacttgaagaatcacaattcatgtcaaaacagacatcatatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacatgtggaaataagggctcaaaagagacggatgatgggaaacttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="7978" stop="6171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7678" g_stop="7423" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6656" g_stop="6471" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="443" r_length="186" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E601861" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7678" e_stop="7423"/>
          <exon e_start="6656" e_stop="6471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAAC-TTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATC</genome_strand>
        <mrna_strand>GATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAGGTTACATACTTCTTTAACAACTTTTTGTTACCACTCACTTTGCAAGTGGATTGACTTTCACTCGGTTGATTGGCAGGGAGAACGAAGGAAAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATACAAGGGCCACTTCAGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGGTGAAAGCAGAAGTAGTTTCAGACTTGAAGAATCACAATTCATGTCAAAACAGACATCATATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACATGTGGAAATAAGGGCTCAAAAGAGACGGATGATGGGAAACTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334847" ref_strand="+" ref_description="SGN-E334847 [cTOE-3-I18]">
      <seq>acaatttggcccttttgacctctcatacaaacaatattgttaaaagaacaggaaaagaaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagacatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataaccaaagcatttttggtggaagcaaaccaaatacaagggcccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagccttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10079" stop="6233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9779" g_stop="9516" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="433" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7521" g_stop="7423" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="614" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6656" g_stop="6533" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="738" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E334847" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9779" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7423"/>
          <exon e_start="6656" e_stop="6533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAG-AAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGG-CCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCA</genome_strand>
        <mrna_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAACAGGAAAAGAAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGACATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGCCTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482873" ref_strand="+" ref_description="SGN-E482873 [cSTE-5-L8]">
      <seq>gaaacttgaaagcaacctgcaattagttgaccatatgatctttcttccattacctaccgtacatgcttgtaaaaagcatcagattctgtcaactttgccgaaagtgcttcaaaaaaggacccttactatatagtcccctcaatttgcccccttttgacctctcatacaaacaatattttaaaaaataggcaaagaaagccccttttaatgatttgtgtccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacagcaggaagaggagagttttgagctatttgtaaagtgctgaagcatattctaagttaggagtcagggacagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgatttctcttcttcagatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagagggagaacgaanganaataaccaaaccatttttggtggaagcaaaacaaatacagggccacttctgtccctcnaccacgtgcagtcttatcaagcccctgttatgaccaaatgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10220" stop="7112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9920" g_stop="9516" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="446" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="563" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="644" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7521" g_stop="7429" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="736" r_length="92" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E482873" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9920" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTG-GCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAA</genome_strand>
        <mrna_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATG--ATCTTTCTTCCATTACCTACCGTACATGCTTGT-AAAAAGCATCAGATTCTGTCAACTTTGCCGAAAGTGCTTCAAAAAAGGACCCTTACTATATAGTCCCCTCAATTTGCCCCCTTTTGACCTCTCATACAAACAATATT-TTAAAA-AATAGGCAAAGAAAG---CCCCTTTTAATGATTTGTGTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGCAGGA--A-GAGGAGAGTTTTGAGCTATTTGTAAAGTGCTGAAGCATATTCTAAGTTAGGAGTCAG............................................................................................................GGACAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGATTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAG...........................................................................GGAGAACGAANGANAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATAC-AGGGCCACTTCTGTCCCTCNACCACGTGCAGTCTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322936" ref_strand="+" ref_description="SGN-E322936 [cTOB-30-I2]">
      <seq>tttgagctatttgtatagttctaaagcatattctaagttaggactcaggaatagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="9863" stop="7333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9563" g_stop="9516" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="99" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="216" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7633" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="261" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E322936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9563" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTT</genome_strand>
        <mrna_strand>TTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAATAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426542" ref_strand="+" ref_description="SGN-E426542 [STM-46-B22]">
      <seq>gaaacttgaaagcaacctgcaattagttgaccatatgatctttcttccattacctaccgtacatgcttgtaaaaagcatcagattctgtcaactttgccgaaagtgcttcaaaaaaggacccttactatatagtcccctcaatttgcccccttttgacctctcatacaaacaatattttaaaaaataggcaaagaaagccccttttaatgatttgtgtccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacagcaggaagaggagagttttgagctatttgtaaagtgctgaagcatattctaagttaggagtcagggacagagatagctggttgactcttgatagcttctgcaagttannagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttcataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10220" stop="8847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9920" g_stop="9516" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="446" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="0.92"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9147" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="546" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E426542" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9920" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTG-GCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGT</genome_strand>
        <mrna_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATG--ATCTTTCTTCCATTACCTACCGTACATGCTTGT-AAAAAGCATCAGATTCTGTCAACTTTGCCGAAAGTGCTTCAAAAAAGGACCCTTACTATATAGTCCCCTCAATTTGCCCCCTTTTGACCTCTCATACAAACAATATT-TTAAAA-AATAGGCAAAGAAAG---CCCCTTTTAATGATTTGTGTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGCAGGA--A-GAGGAGAGTTTTGAGCTATTTGTAAAGTGCTGAAGCATATTCTAAGTTAGGAGTCAG............................................................................................................GGACAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTANNAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTT-CATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746005" ref_strand="+" ref_description="SGN-E746005 [GI|47105397]">
      <seq>ggatatatagtttgcgttgactactattgaggtagtaggtagcatctattatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10752" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11050" g_stop="11164" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="13637" g_length="1709"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="1824" r_length="1709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1825" polyA_stop="1838"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E746005" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1824</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11050" e_stop="11164"/>
          <exon e_start="11929" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>GGATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447317" ref_strand="+" ref_description="SGN-E447317 [cSTA-26-C5]">
      <seq>tattgaggtagtaggtagcatctatctcttttagggttccatcgcccacacacactcttcactctggggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcacatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcaactgaagagggtaagcgtatatatggtgacatcattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10774" stop="12781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11074" g_stop="11164" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.791"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.63"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12481" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="535" r_length="438" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E447317" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11074" e_stop="11164"/>
          <exon e_start="12044" e_stop="12481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTC-T--C-C-G--GTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCAT</genome_strand>
        <mrna_strand>TATTGAGGTAGTAGGTAGCATCTA-TCTCTTTTAGGGTTCCATCGCCCACACACACTCTTCACTCTGGGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCACATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAACTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739065" ref_strand="+" ref_description="SGN-E739065 [LC16AA07]">
      <seq>cttatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggtttcaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctangcggtaatgcaccttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10798" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11097" g_stop="11164" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12873" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="898" r_length="830" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E739065" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11097" e_stop="11164"/>
          <exon e_start="12044" e_stop="12873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATC</genome_strand>
        <mrna_strand>CTTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTTCACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTANGCGGTAATGCACCTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328850" ref_strand="+" ref_description="SGN-E328850 [cTOC-24-M21]">
      <seq>tatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatgggattttcccttggctatgattaccccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccatttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10799" stop="12980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11099" g_stop="11164" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12680" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="704" r_length="638" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E328850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11099" e_stop="11164"/>
          <exon e_start="12044" e_stop="12680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTA-CCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</genome_strand>
        <mrna_strand>TATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGGATTTTCCCTTGGCTATGATTACCCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272807" ref_strand="+" ref_description="SGN-E272807 [cLEM-21-P20]">
      <seq>tcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10801" stop="12786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11101" g_stop="11164" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12486" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="622" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E272807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11101" e_stop="11164"/>
          <exon e_start="11929" e_stop="12486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCA</genome_strand>
        <mrna_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272540" ref_strand="+" ref_description="SGN-E272540 [cLEM-21-C24]">
      <seq>tcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10801" stop="12731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11101" g_stop="11164" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12431" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="567" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E272540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11101" e_stop="11164"/>
          <exon e_start="11929" e_stop="12431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTAT</genome_strand>
        <mrna_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698982" ref_strand="+" ref_description="SGN-E698982 [FA08AG10]">
      <seq>cttttaggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10802" stop="12906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11102" g_stop="11164" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12606" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="740" r_length="678" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E698982" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11102" e_stop="11164"/>
          <exon e_start="11929" e_stop="12606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGT</genome_strand>
        <mrna_strand>CTTTTA-GGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365579" ref_strand="+" ref_description="SGN-E365579 [cLPT-12-L16]">
      <seq>ttttagggttccattgctcacacacactctccggtagatctcccagattcttcgacggaaaaggtcctgtgccactgatgacgacagacacacaaagtgttgctgctaagctgagcagctttggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagactaaccatgcaatatcttctgcctatgatgcatttagttcatggagcggacttactgccgctgaaaggagcacatatttaaggaagtggtgctatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10803" stop="12720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11103" g_stop="11164" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12420" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="440" r_length="377" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E365579" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11103" e_stop="11164"/>
          <exon e_start="12044" e_stop="12420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCA-ATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGG</genome_strand>
        <mrna_strand>TTTTAGGGTTCCATTGCTCACACACACTCTCCGGTAGATCTCCCAGATTCTTCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCCACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTTTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACTAACCATGCAATATCTTCTGCCTATGATGCATTTAGTTCATGGAGCGGACTTACTGCCGCTGAAAGGAGCACATATTTAAGGAAGTGGTGCTATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313653" ref_strand="+" ref_description="SGN-E313653 [cTOA-12-N13]">
      <seq>ttttagggtttcatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggttataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10803" stop="12645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11103" g_stop="11164" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12345" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="479" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E313653" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11103" e_stop="11164"/>
          <exon e_start="11929" e_stop="12345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAA</genome_strand>
        <mrna_strand>TTTTAGGGTTTCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTTATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454696" ref_strand="+" ref_description="SGN-E454696 [cSTS-24-I5]">
      <seq>ccatcgctcacacacactctcttcactctccggtagatctccaaattctccgacgaaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagaactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaaataccaccgggcgtagtgaatgttgatatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaatacattcacaggttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10827" stop="13087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11128" g_stop="11164" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="61" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12787" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="806" r_length="745" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E454696" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11128" e_stop="11164"/>
          <exon e_start="12044" e_stop="12787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAG-ACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGG-AATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAA</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGAACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAAATACCACCGGGCGTAGTGAATGTTGATATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAA-TACATTCACAGGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478758" ref_strand="+" ref_description="SGN-E478758 [cSTD-6-L12]">
      <seq>cttttagggttccatcgctcacacacactctcttcactctccggtagatctccaaattctccgacgaaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttggtggtgcaattacgccatggaattttcccttggctatgattacccgaaagggttgccctgctcttgcttgtggttggacagggggtggataaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10802" stop="13062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11128" g_stop="11164" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="72" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12759" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="788" r_length="716" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E478758" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11128" e_stop="11164"/>
          <exon e_start="12044" e_stop="12759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACA-GTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAG</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGGTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGGTTGCCCTGCTCTTGCTTGTGGTTGGACAGGGGGTGGATAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACC-CCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592048" ref_strand="+" ref_description="SGN-E592048 [45773]">
      <seq>ctcacacacactcttcactctccggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagccacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10827" stop="12980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11128" g_stop="11164" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="53" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12680" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="690" r_length="637" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E592048" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11128" e_stop="11164"/>
          <exon e_start="12044" e_stop="12680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGCCACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443018" ref_strand="+" ref_description="SGN-E443018 [cSTA-35-L4]">
      <seq>cttttagggttccatcgcccacacacactcttcactctccggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10802" stop="12817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11128" g_stop="11164" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="70" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12044" g_stop="12517" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="544" r_length="474" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E443018" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11128" e_stop="11164"/>
          <exon e_start="12044" e_stop="12517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGC</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590922" ref_strand="+" ref_description="SGN-E590922 [44528]">
      <seq>ctcttttagggttccatcgctcacacactctcttcactctccggtagatctccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10801" stop="12746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11128" g_stop="11164" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="72" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12446" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="590" r_length="518" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E590922" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11128" e_stop="11164"/>
          <exon e_start="11929" e_stop="12446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGA</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548853" ref_strand="+" ref_description="SGN-E548853 [TUS-65-A10]">
      <seq>gtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggaaggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttattttgtttaaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10836" stop="12820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11136" g_stop="11164" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12520" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="621" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E548853" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11136" e_stop="11164"/>
          <exon e_start="11929" e_stop="12520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAAC</genome_strand>
        <mrna_strand>GTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAAGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTTGTTTAAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303144" ref_strand="+" ref_description="SGN-E303144 [cLEX-5-D17]">
      <seq>tagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10837" stop="12586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11137" g_stop="11164" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="12286" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="386" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E303144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11137" e_stop="11164"/>
          <exon e_start="11929" e_stop="12286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTA</genome_strand>
        <mrna_strand>TAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445007" ref_strand="+" ref_description="SGN-E445007 [cSTA-44-O10]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagcaccagttgggtgttgttggtgcaattactccgtggaattttcccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12564" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="658" r_length="636" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E445007" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTT-GGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTG</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGC-ACCAGTTGGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417164" ref_strand="+" ref_description="SGN-E417164 [STM-24-L6]">
      <seq>tccgacggaaaaggttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12533" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="618" r_length="605" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E417164" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGT</genome_strand>
        <mrna_strand>GTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444522" ref_strand="+" ref_description="SGN-E444522 [cSTA-43-A4]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaagttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12496" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="590" r_length="568" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E444522" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAAGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474442" ref_strand="+" ref_description="SGN-E474442 [cSTB-36-F11]">
      <seq>ccaaattctccgactaaaaagtttattcatttggatgcttgaagttggaattggggtgccctgatgcaaatgattcgtgtgcgtaccaaaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcatctctggattgctgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagaccaatgatgcaatttcttctgcctatgatgcatttagcttatggagcaaacttactgccgatgaaaggagcaaatatttaaggaagtggtgtgatttcgataatggcccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12344" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="438" r_length="417" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E474442" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTT-GATAATGGCCCATAA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTGGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAAAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCATCTCTGGATTGCTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACCAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTTATGGAGCAAACTTACTGCCGATGAAAGGAGCAAATATTTAAGGAAGTGGTGTGATTTCGATAATGGCCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445718" ref_strand="+" ref_description="SGN-E445718 [cSTA-18-E20]">
      <seq>tccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12331" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="416" r_length="403" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E445718" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414769" ref_strand="+" ref_description="SGN-E414769 [STM-20-I17]">
      <seq>ccaaattctccgacgaaaaagtttattcatttggatgcttgaagttggaatttgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacnnttactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12291" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="386" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E414769" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAAC--TTACTGCC</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTTGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACNNTTACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445008" ref_strand="+" ref_description="SGN-E445008 [cSTA-44-O10]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11627" stop="12470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11929" g_stop="12170" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="264" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E445008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11929" e_stop="12170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474444" ref_strand="+" ref_description="SGN-E474444 [cSTB-36-F17]">
      <seq>cctgatgcacatgattcccgtgcgtaccataatggctctttctgcttgtgcgatgttacataggtcctcaattacaagtcctgtgccactgatgacgacagacacacaaagtattgctgataagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggatggtgcatatgatgggaagactataaaggtgcacaatcctgcaacaggggaggtgataacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11668" stop="12505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11967" g_stop="12205" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E474444" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11967" e_stop="12205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAG</genome_strand>
        <mrna_strand>CCTGATGCACATGATTCCCGTGCGTACCATAATGGCTCTTTCTGCTTGTGCGATGTTACATAGGTCCTCAATTACAAGTCCTGTGCCACTGATGACGACAGACACACAAAGTATTGCTGATAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGATGGTGCATATGATGGGAAGACTATAAAGGTGCACAATCCTGCAACAGGGGAGGTGATAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561323" ref_strand="+" ref_description="SGN-E561323 [17296]">
      <seq>tgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagccacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggcctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11678" stop="12896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11978" g_stop="12596" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E561323" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11978" e_stop="12596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCT</genome_strand>
        <mrna_strand>TGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGCCACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGG-CCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454224" ref_strand="+" ref_description="SGN-E454224 [cSTS-22-H11]">
      <seq>gctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaaagtggccctgctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11701" stop="12881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12001" g_stop="12599" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E454224" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12001" e_stop="12599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGC</genome_strand>
        <mrna_strand>GCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAAGTGGCCCTGCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449381" ref_strand="+" ref_description="SGN-E449381 [cSTS-6-E18]">
      <seq>ctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11742" stop="12979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12044" g_stop="12679" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="650" r_length="636" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E449381" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12044" e_stop="12679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAG</genome_strand>
        <mrna_strand>GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542576" ref_strand="-" ref_description="SGN-E542576 [TUS-63-P7]">
      <seq>tcaagagacacctttttagcggtggcagcagcacattccatcaattttttcccaaccttggttgaacctgtgaatgtaatttttcttacgtgtgggcttgcaagcagtgcgtctccaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaagggtgtgagttcagacggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtaatcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacactttgtgtgtctgtcgtcatcagtcgcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13148" stop="11746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12848" g_stop="12546" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12269" g_stop="12046" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="527" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E542576" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12848" e_stop="12546"/>
          <exon e_start="12269" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</genome_strand>
        <mrna_strand>TCAAGAGACACCTTTTTAGCGGTGGCAGCAGCACATTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACGTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542569" ref_strand="-" ref_description="SGN-E542569 [TUS-63-P3]">
      <seq>atttttcttagccgcgggcttgcaagcagtaagtctccaaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaaggagtgtgagttccgccggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtagtcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacacttcgtgtgtctgtcgtcatcagtcgcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13070" stop="11746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12770" g_stop="12546" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276">
            <donor d_prob="0.729" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12269" g_stop="12046" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="451" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E542569" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12770" e_stop="12546"/>
          <exon e_start="12269" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCC-AATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGG-GTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</genome_strand>
        <mrna_strand>ATTTTTCTTAGCCGCGGGCTTGCAAGCAGTAAGTCTCCAAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGAGTGTGAGTTCCGCCGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAGTCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTCGTGTGTCTGTCGTCATCAGTCGCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301175" ref_strand="-" ref_description="SGN-E301175 [cLEW-22-H3]">
      <seq>taaagctacttcaagatctgcgtcatcaaagatgatgcaaggtgcattaccgcctagctcaagagacacctttttaacggtggcagcagcaccttccatcaattttttcccaaccttggttgaacctgtgaatgtaatttttcttacctgtgggcttgcaagcagtgcgtctccaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaagggtgtgagttcagacggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtaatcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacactttgtgtgtctgtcgtcatcagtcgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13206" stop="11747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12906" g_stop="12546" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12269" g_stop="12047" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="584" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E301175" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12906" e_stop="12546"/>
          <exon e_start="12269" e_stop="12047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTG</genome_strand>
        <mrna_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591981" ref_strand="+" ref_description="SGN-E591981 [45704]">
      <seq>gcggagtcaggctcttattcgagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctggctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11811" stop="13061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12111" g_stop="12759" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E591981" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12111" e_stop="12759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCT-GCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAG</genome_strand>
        <mrna_strand>GCGGAGTCAGGCTCTTATTCGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480588" ref_strand="+" ref_description="SGN-E480588 [cSTD-14-B21]">
      <seq>gtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11816" stop="13027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12116" g_stop="12728" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E480588" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12116" e_stop="12728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGA</genome_strand>
        <mrna_strand>GTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463210" ref_strand="+" ref_description="SGN-E463210 [cPRO-13-N18]">
      <seq>tcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaagttccgtaacaccggacaaacatgtgtatgcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11947" stop="13260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12247" g_stop="12960" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E463210" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12247" e_stop="12960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCG</genome_strand>
        <mrna_strand>TCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAAC-AAGTTCCGTAACACCGGACAAACATGTGTATGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457944" ref_strand="+" ref_description="SGN-E457944 [cPRO-4-O9]">
      <seq>aaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgatnaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatggtgttatgggaaatgcacctgctattggagacgcactgcttgncagcccacaggtaagaaaattacattcacaggttcaaccaaggttgggaaaaaatgatggaagtgctgctgccaccgttaaaaagtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaggagctctggcgancaagtccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaatttcgcaatgcttttgcaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11980" stop="13322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="13022" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E457944" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="13022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGT</genome_strand>
        <mrna_strand>AAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATNAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGGTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGNCAGCCCACAGGTAAG-AAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAA-TGATGGAA-GTGCTGCTGCCACCGTTAAAAA-GTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTT-AAAGGAGCTCTGGCGANCAAG-TCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTTCGCAATGCTTTTGC-AAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474824" ref_strand="+" ref_description="SGN-E474824 [cSTB-38-G17]">
      <seq>gctgaaaggagcaaatatttaaagaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacacttgagcaagggaaacctctgaaagatgccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaagttcaaccaaagttgggaaaaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="11992" stop="13110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12292" g_stop="12810" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E474824" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12292" e_stop="12810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATG</genome_strand>
        <mrna_strand>GCTGAAAGGAGCAAATATTTAAAGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTTGAGCAAGGGAAACCTCTGAAAGATGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAAGTTCAACCAAAGTTGGGAAAAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701355" ref_strand="+" ref_description="SGN-E701355 [FA15DA01]">
      <seq>aagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaaaggagccaaagtccttgttggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12044" stop="13457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12344" g_stop="13157" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E701355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12344" e_stop="13157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGG</genome_strand>
        <mrna_strand>AAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAAGGAGCCAAAGTCCTTGTTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456756" ref_strand="+" ref_description="SGN-E456756 [cSTS-30-O8]">
      <seq>ctagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12070" stop="13223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12370" g_stop="12923" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E456756" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12370" e_stop="12923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAAC</genome_strand>
        <mrna_strand>CTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706150" ref_strand="+" ref_description="SGN-E706150 [FA29AF05]">
      <seq>atatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12162" stop="13695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12462" g_stop="12792" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="12865" i_length="73">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12866" g_stop="13395" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="861" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E706150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12462" e_stop="12792"/>
          <exon e_start="12866" e_stop="13395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</genome_strand>
        <mrna_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG.........................................................................GTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706826" ref_strand="+" ref_description="SGN-E706826 [FA31AB09]">
      <seq>gttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggcccatcgcccctcttttgaagttcaaaacagacgaagaaccaatccaaatggctaacgacactaatgctgggtttacctgcttatatattctcaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12223" stop="13650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12523" g_stop="13350" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E706826" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12523" e_stop="13350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCT-GGTTTAGCTGCTTATATATTCTCAACAAAC</genome_strand>
        <mrna_strand>GTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCCATCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAACCAATCCAAATGGCTAACGACACTAATGCTGGGTTTACCTGCTTATATATTCTCAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690239" ref_strand="+" ref_description="SGN-E690239 [LH_Ea02P21]">
      <seq>cgtttgctcttgcttgtggttgcacagtggtgattaaaccttctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccggtgcgtattgaatgttgtcatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcacaaatgcttttgcgaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacatctaagggagccaaagtcctcgttggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagaccaataagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12291" stop="13642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12587" g_stop="13342" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E690239" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12587" e_stop="13342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGG-GCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCT</genome_strand>
        <mrna_strand>CGTTTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCTTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGTGCGTATTGAATGTTGTCATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCACAAATGCTTTTGCGAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACATCTAAGGGAGCCAAAGTCCTCGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACCAATAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557605" ref_strand="+" ref_description="SGN-E557605 [16429]">
      <seq>cccgggctgcaggatccggcacgagggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttacagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaagttgaatcttttgtagaagaagctacttcgaagggagccaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12304" stop="13446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12614" g_stop="13147" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="567" r_length="532" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E557605" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12614" e_stop="13147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCC</genome_strand>
        <mrna_strand>TGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTA-CAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAA-GTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450615" ref_strand="+" ref_description="SGN-E450615 [cSTS-9-J22]">
      <seq>gtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12316" stop="13531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12616" g_stop="13231" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E450615" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12616" e_stop="13231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGG</genome_strand>
        <mrna_strand>GTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583349" ref_strand="+" ref_description="SGN-E583349 [9170]">
      <seq>tgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagcaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12330" stop="13521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12630" g_stop="13221" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E583349" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12630" e_stop="13221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAG-AAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAG</genome_strand>
        <mrna_strand>TGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGCAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710227" ref_strand="+" ref_description="SGN-E710227 [FA54CH06]">
      <seq>cgatctctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaataccggatggatgaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12364" stop="13801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12663" g_stop="13501" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E710227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12663" e_stop="13501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATT</genome_strand>
        <mrna_strand>CGATCTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACCGGATGGATGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439926" ref_strand="+" ref_description="SGN-E439926 [cSTA-14-K15]">
      <seq>cactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12440" stop="13656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12740" g_stop="13356" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E439926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12740" e_stop="13356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAA</genome_strand>
        <mrna_strand>CACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451796" ref_strand="+" ref_description="SGN-E451796 [cSTS-14-A22]">
      <seq>ggttgggaaaaaattgatggaaggtgctgctgccaccgtcaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgagtcttttgtagaagaagctacttcaaagggagccaaagtcctcgttggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttacatattctcaacaaacattaaaagagcttggcgtgttactgaagctctcgaaatggaattgtcggagttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12492" stop="13708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12792" g_stop="13408" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E451796" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12792" e_stop="13408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATG</genome_strand>
        <mrna_strand>GGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTCAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAGTCTTTTGTAGAAGAAGCTACTTCAAAGGGAGCCAAAGTCCTCGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTACATATTCTCAACAAACATTAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAA-ATGGAATTGTCGGAGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542567" ref_strand="+" ref_description="SGN-E542567 [TUS-63-P3](-)">
      <seq>gtagcttaaaaggagctctcgcaacaaagttccgtaccaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12598" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12898" g_stop="13637" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="753"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E542567" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12898" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>GTAGC-TTAAAAGGAGCTCTCGCAACAAAGTTCCGTACCACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590209" ref_strand="+" ref_description="SGN-E590209 [43800]">
      <seq>attcataaagacgtgaaaactgcattaaacccaaaatgagactggcaccattgtgtctcttattagtgagaaaaaaaaattacataggtgatttagctcatacttcccaagcacacatatttcatctctaaatattcatccatcccgtatttagaaccttcgcggccaagacctgattgtttcacgcctccgaatggagctacctcggttgaaactagtccttcattaactccgacaattccatattcgagagcttcagtaacacgccaagctcttttaatgtttgttgagaatatgtaagcagctaaaccagcattggtgtcgttagccatttggattgcttcttcgtctgttttgaacttcaaaagaggggcgactggcccaaatacttcctctttcgccaagagcatctcactgttaactccagttacgactgtaggctcgtagaaagtcatgccaaggctgtgtctcttcccaccaacgaggactttggctccctttgaagtagcttcttctacaaaagactcaaccttctgtactgctgcttcattgattagagggccttggctccacaccttcaggtgaaaccatctccaactttcatgttttggacagcttttgcaaaagcatttgcgaatttatcatatatcccttcttgcacaagtattctgttcgcgcatacacatgtttgtccggtgttacggaactttgttgccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13934" stop="12614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13634" g_stop="12914" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E590209" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13634" e_stop="12914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTAACAACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACAAGGACTTTGGCTCCCTTTGAAGTAGCTTCATCCACAAAATATTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTT-GCTCTACACCTTCA-GTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTAGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCACATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCGAGAG</genome_strand>
        <mrna_strand>ATTCATAAAGACGTG-AAAACTGCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTAGTGAGAAA--AAAAAATTACATAGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACGCCTCCGAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTAATGTTTGTTGAGAATATGTAAGCAGCTAAACCAGCATTGGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTTACGACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACGAGGACTTTGGCTCCCTTTGAAGTAGCTTCTTCTACAAAAGACTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTTGGCTCCACACCTTCAGGTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTTGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCGCATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414770" ref_strand="-" ref_description="SGN-E414770 [STM-20-I17]">
      <seq>gtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttttacgagcctacagtcgtaactggagttaacagtgagatgctattggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccattcggaggcgtgaaacaatcaggttttggccgcgaaggttttaaatacgggatggatgaatatttagagatgaaatatgtgtgcttggggagtatgagctaaatcccctgtgtaatttttttttttctcactaataagggacacaatggtgccagtctcattttgggtttaatgcagttttcacgtctttatgaatgaacacatttttagtgtctttattgcctctcttctttacaaaaaaaaaaaaaaaaaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12673" stop="13974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12973" g_stop="13673" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="727"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E414770" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414770" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12973" e_stop="13673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACA-TTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</genome_strand>
        <mrna_strand>GTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTTTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTCGGAGGCGTGAAACAATCAGGTTTTGGCCGCGAAGGTTTTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGGAGTATGAGCTAAATCCCCTGTGTAATTTTTTTTTTTCTCACTAATAAGGGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGCAG-TTTTCACGTCTTTATGAATGAACACATTTTTAGTGTCTTTATTGCCTCTCTTCTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555773" ref_strand="-" ref_description="SGN-E555773 [cTSD-1-F6]">
      <seq>gaagggatatatgataaatttgcaaatgcttttgctaaagctgtccaaaacctgaaagttggggatggtttccctgaaggtgtagagcaaggcccttttatcaatgaagcagccgtacagaaggttgaatattttgtgggtgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgacttttttcgagcctacagttgtttctggagttaaccgtgagatgcttttggcgaaagaggaagtatttgggcccgtcgccccttttttgaagttcaaaaccggcgaagaagcaatccaaatggctaacggccctaatgctggtttagctgcttatatattttcaacaaacatcaaaagagcttggggtgttactgaagctcttgaatatggaattgttggagttaatgaagggctagtttcaaccggggtagctccctttgggggtgtgaaacaatcaggttttggccgcgaaggttttaaatacgggatgggtgaatttttagggatgaaatatgtgtgcttgggaagtatgagctaaatcccccctgtaaaaaaaaaatttttcaataataagagacccaatggtgcccgtctcattttgggtttaatgaagtttttcacgtctttatgaatgaacccattttagtgttttataaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12679" stop="13956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12979" g_stop="13648" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="696"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E555773" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555773" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12979" e_stop="13648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGT</genome_strand>
        <mrna_strand>GAAGGGATATATGATAAATTTGCAAATGCTTTTGCTAAAGCTGTCCAAAACCTGAAAGTTGGGGATGGTTTCCCTGAAGGTGTAGAGCAAGGCCCTTTTATCAATGAAGCAGCCGTACAGAAGGTTGAATATTTTGTGGGTGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTTTTCGAGCCTACAGTTGTTTCTGGAGTTAACCGTGAGATGCTTTTGGCGAAAGAGGAAGTATTTGGGCCCGTCGCCCCTTTTTTGAAGTTCAAAACCGGCGAAGAAGCAATCCAAATGGCTAACGGCCCTAATGCTGGTTTAGCTGCTTATATATTTTCAACAAACATCAAAAGAGCTTGGGGTGTTACTGAAGCTCTTGAATATGGAATTGTTGGAGTTAATGAAGGGCTAGTTTCAACCGGGGTAGCTCCCTTTGGGGGTGTGAAACAATCAGGTTTTGGCCGCGAAGGTTTTAAATACGGGATGGGTGAATTTTTAGGGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCCCCCCTGTAAAAAAAAAATTTTTCAATAATAAGAGACCCAATGGTGCCCGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACCCATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716168" ref_strand="+" ref_description="SGN-E716168 [FB16BC01]">
      <seq>gggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12682" stop="127791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12982" g_stop="13624" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E716168" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12982" e_stop="13624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGT</genome_strand>
        <mrna_strand>GGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542574" ref_strand="+" ref_description="SGN-E542574 [TUS-63-P7](-)">
      <seq>tgggaagagacacagccttggcatgactttttacgagcctaccagtttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12855" stop="13935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13155" g_stop="13635" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E542574" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13155" e_stop="13635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTA-CAG-TTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATG</genome_strand>
        <mrna_strand>TGGGAAGAGACACAGCCTTGGCATGACTTTTTACGAGCCTACCAGTTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266340" ref_strand="-" ref_description="SGN-E266340 [cLEI-3-E21]">
      <seq>aagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgatatgctcttggcgaaagagaaagtatttgggccagtagcccctcttttgaagttcaaaacagacgaagaagcaatcccaatggctaacgacactaatgctggtttagcaggttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtaggtccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttgtaaattcgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatctcccctgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagttcctcacgtctttatgaatgcacacattttagtgaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12859" stop="13949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13159" g_stop="13648" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="512"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E266340" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13159" e_stop="13648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGT</genome_strand>
        <mrna_strand>AAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGATATGCTCTTGGCGAAAGAGAAAGTATTTGGGCCAGTAGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCCAATGGCTAACGACACTAATGCTGGTTTAGCAGGTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGGTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTGTAAATTCGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCTCCCCTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTCCTCACGTCTTTATGAATGCACACATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219562" ref_strand="+" ref_description="SGN-E219562 [cLEL-11-I16](-)">
      <seq>gcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12875" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13175" g_stop="13640" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="481"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E219562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13175" e_stop="13640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAC</genome_strand>
        <mrna_strand>GCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587396" ref_strand="+" ref_description="SGN-E587396 [78512]">
      <seq>ctacgagcctacagtcgtaactggagttaacagtgagatgctattggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccattcggaggcgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttggggagtatgagctaaatcacctgtgtaattttttttttctcactaataagggacacaatggtgccagtctcattttgggtttaatgcagttttcacgtctttatgaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12885" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13185" g_stop="13637" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="469"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E587396" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13185" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>CTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTCGGAGGCGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGGAGTATGAGCTAAATCACCTGTGT-AATTTTTTTTTTCTCACTAATAAGGGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGCAG-TTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215604" ref_strand="+" ref_description="SGN-E215604 [cLEL-15-G15](-)">
      <seq>tacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgancaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12894" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13194" g_stop="13640" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="462"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E215604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13194" e_stop="13640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAC</genome_strand>
        <mrna_strand>TACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGANCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226208" ref_strand="+" ref_description="SGN-E226208 [cLEL-31-E4](-)">
      <seq>tgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacaggcgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcacccctgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12923" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13223" g_stop="13637" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="434"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E226208" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13223" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>TGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGGCGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCCCTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208535" ref_strand="+" ref_description="SGN-E208535 [cLEC-39-H17]">
      <seq>ttcataaagacgtgaaaaacttcattaaacccaaaatgagactggcaccattgtgtctcttattattgagaaattttttttttacagtggtgatttagctcatacttcccaagcacacatatttcatctctaaatattcatccatcccgtatttagaaccttcgcggccaagacctgattgtttcacacccccaaatggagctacctcggttgaaactagtccttcattaactccgacaattccatattcgagagcttcagtaacacgccaagctcttttgatgtttgttgagaatatataagcagctaaaccagcattagtgtcgttagccatttggattgcttcttcgtctgttttgaacttcaaaagaggggcgactggcccaaattctttctttttcgccaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13933" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13633" g_stop="13225" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E208535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13633" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAG</genome_strand>
        <mrna_strand>TTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATTCTTTCTTTTTCGCCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538153" ref_strand="+" ref_description="SGN-E538153 [TUS-57-C8]">
      <seq>ttagagagggtttttggtggaaatatgttgaagttgcctaaacggaatttgccatggctgcagctgagacgattatcaacggcgattcgacaaactgtagaagatgaaggcgactggttttattcatcggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccaaaccagaaaactgttattgggggaaaacagagaattggcttcaaaagaggtatgaaaagatgtatccaagagatgaacaggaagggaatttcaggattcttggttaccaatggcggaatcttcactttaatgaggagactcgtcaaagcacagttaaaataatggctgcttatagggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggctaccattgcatcttgtagattcgatcttgaaagtgcagtttgtgggagaaaaccaatgaaaattttatgcattgggcatggcggaggaagcataccgttgtttttggctagtaaaatccaaggtgctgaagtgcacatagctgaaatcgaccctgtggtaatctcagcctcagttcaagcaatggggttcccatcttactcagttatgactccatctggtagccgtgcacactcaactcctgatcttatccaagaagttcaatggaaaggcattcatgagaggattncattacatgaatcagatgctgagaaattcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="14042" stop="17041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14342" g_stop="14575" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14671" g_stop="14899" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="463" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15433" g_stop="15585" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="616" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15586" i_stop="16544" i_length="959">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16545" g_stop="16741" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="813" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E538153" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14342" e_stop="14575"/>
          <exon e_start="14671" e_stop="14899"/>
          <exon e_start="15433" e_stop="15585"/>
          <exon e_start="16545" e_stop="16741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAGGTTTGAACTGAGTGCTGTTTTTCCTGCCTTTGCTGCTCTTTAAGTCTCTGAATTTGAGCATTTTTTTGGGTGACATTGTGTATTTGACAAAGTATGAACGGGAAATCATTATCCAATCCTTCTTTTCACTGGATGTGATATTAAAGACACATACTTTCTCCCTTTTATGTAAAATCTTATCTTGAATGTAAATTTTGGGGAGGTAATCTGACATGAGATGATGCAGAAAACTCAAGATTATGTATTTCTTCAACTATAGTTGATATCCTCTGGATGACCTCAAATACAATATTGACTGAATTTCTTTCAAGTTTCTGAGGGAACTTCCATTTTCTCATAGATTATGTACAGGATGTGAGGTCTGCTGGAAGAACAAATAATAAAAATGAGTGTTTTTTTAACTACAGAAATTTCATTACTGTATGCTTGGATCGCTAGGACAAGGGGCTTAAATAATGAAAGATTGTGTGTATCATACCACAAATTCATCCCTGTAGTTCTTGTTTGGTTCACATAGATGTGGTAAATTTGGATATGCTGTTGTTCGTAGTAGTAGAATTTGAAGCACTGCTACTCCAAATATTACAAAGTTCTGAAGCTCACTCTTGGCTTTTTGGATAAAGTTGTAAAATGAACACCTTGGATAGCTTGTATTCTTGCATTGCATATCTCCCAGTCAGTGTTTCCTTACTATCCACTTGGATATATTTACGAATTTCAGTGATAATAGTCATAGTACTTCTGTCCAACATTTTCTCGGAGAAAAGATATGAATATCAGATTACCTAGAATTGGAACTACTTTGTTCTCTGCTTTTTGAATCCCTTCAATGGCATTGCAACTTCAATTTCTAGTTTGACAGACTTGACACTCGTTCCGAAACTAACTGTTGCTTGTCTTAATTTGTTGTACCAATTTGCGAAATGTCTGTTTTGGAATTAACCTCTTCGATGTATCAGGTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTC</genome_strand>
        <mrna_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA...............................................................................................GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTNCATTACATGAATCAGATGCTGAGAAATTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268129" ref_strand="+" ref_description="SGN-E268129 [cLEI-15-C24]">
      <seq>tagagagggtttttggtggaaatatgttgaagttgcctaaacggaatttgccatggctgcagctgagacgattatcaacggcgattcgacaaactgtagaagatgaaggcgactggttttattcatcggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccgaaccagaaaactgttattgtgggaaaacagagaattggcttccaaagaggtatgaaaagatgtatccaagagatgaacatgaagggaatttcaggattcttggttaccaatggcggaatcttcactctaatgaggagactcgtcaaagcacagttaaaataatggctgcttatacggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggcttccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="14043" stop="15772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14343" g_stop="14575" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14671" g_stop="14899" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="462" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15433" g_stop="15472" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="502" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E268129" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14343" e_stop="14575"/>
          <exon e_start="14671" e_stop="14899"/>
          <exon e_start="15433" e_stop="15472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGC</genome_strand>
        <mrna_strand>TAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCGAACCA...............................................................................................GAAAACTGTTATTGTGGGAAAACAGAGAATTGGCTTCCAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACATGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTCTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATACGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTTCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203698" ref_strand="+" ref_description="SGN-E203698 [cLEC-15-F10]">
      <seq>cggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccaaaccagaaaactgttattgggggaaaacagagaattggcttcaaaagaggtatgaaaagatgtatccaagagatgaacaggaagggaatttcaggattcttggttaccaatggcggaatcttcactttaatgaggagactcgtcaaagcacagttaaaataatggctgcttatagggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggctaccattgcatcttgtagattcgatcttgaaagtgcagtttgtgggagaaaaccaatgaaaattttatgcattgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="14169" stop="15841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14469" g_stop="14575" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14671" g_stop="14899" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="336" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15433" g_stop="15541" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="445" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E203698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14469" e_stop="14575"/>
          <exon e_start="14671" e_stop="14899"/>
          <exon e_start="15433" e_stop="15541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCA</genome_strand>
        <mrna_strand>CGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA...............................................................................................GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548009" ref_strand="+" ref_description="SGN-E548009 [TUS-57-C8](-)">
      <seq>agttatgactccatctggtagccgtgcacactcaactcctgatcttatccaagaagttcaatggaaaggcattcatgagaggattcaattacatgaatcagatgctgagaaattcctcctcgagaacaaaaatctttatgatcttgttttcatagacgcatatgacggggaagatatctttcctcacaccctatgggatccacactctccattcctcaatgctctcgcagaccaacttcaccctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="16324" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16624" g_stop="17244" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="655"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E548009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16624" e_stop="17244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</genome_strand>
        <mrna_strand>AGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236806" ref_strand="+" ref_description="SGN-E236806 [cLEL-7-H1](-)">
      <seq>attcctcaatgctctcgcagaccaacttcaccctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="16534" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16834" g_stop="17260" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E236806" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16834" e_stop="17260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>ATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236944" ref_strand="+" ref_description="SGN-E236944 [cLEL-7-H1](-)">
      <seq>caatgctctcgcagaccaacttcacctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="16540" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16840" g_stop="17260" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E236944" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16840" e_stop="17260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>CAATGCTCTCGCAGACCAACTTCA-CCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236727" ref_strand="+" ref_description="SGN-E236727 [cLEL-7-J17](-)">
      <seq>atgctctcgcagaccaacttcaccctgagcatggaactgttgttgaaaccttcactcagnatgtagacttcagggatcatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattaggcagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="16542" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16842" g_stop="17260" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E236727" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16842" e_stop="17260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAG-ATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>ATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTTG-AAACCTTCACTCAGNATGTAGACTTCAGGGATCATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGCAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237167" ref_strand="+" ref_description="SGN-E237167 [cLEL-7-J17](-)">
      <seq>agcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaaaaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggtttttctctggttaattaatatgaattaaaagtatttccccttcaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="16569" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16869" g_stop="17244" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="392"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E237167" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16869" e_stop="17244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</genome_strand>
        <mrna_strand>AGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAAAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTTCTCTGGTTAATTAATATGAATTAAAAGTATTTCCCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="20986" stop="50053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21286" g_stop="21607" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21286" e_stop="21607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="20986" stop="21881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21286" g_stop="21590" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21286" e_stop="21590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354530" ref_strand="+" ref_description="SGN-E354530 [cTOS-17-O17]">
      <seq>tccaaaaagctcaggttgaatgtggtagctcaatttctggccaaatatttcttcataagtgctttgttagttataattattatccaaatggggctcccacaaaatcatcatcatcatcatcttcatactggtctccatctccttcagcagggacaggccaaaacacagggaaaacagtggctataatactaggaggagcagcaggagttggttttctagtcatttgcatgctctttgcaaggaaccaaatgaagaaacatgatgattattgaagggatcagctgtgtattattattataaaaggctggcaaaagctttttatgaggtggattctttccttgtcaagattttctacctagaaggaaaatatattttcttggaaattcctgaaaaaaagtgagggagtttgtgagctgtaattcttggaattattaggtaaaaagagaaaaacaaaaatactattttggggacataaatttttggagaaatgatgtaacaatacatgttttttttgtcaactatgaagaagattggcaagagcattataatgtttttttggcctttttctcctatggccatgtgcatgttgtatcttttctctttgtctctgaataattgtttcacccttttttttcttcttctaaagttttttactttttaaaaacnaaaaaaaaaaaaaaaaaaaaaagaaaggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="26984" stop="24952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26684" g_stop="26535" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26534" i_stop="25983" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25982" g_stop="25869" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="264" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25868" i_stop="25651" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25650" g_stop="25252" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="663" r_length="399" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="692"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E354530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26684" e_stop="26535"/>
          <exon e_start="25982" e_stop="25869"/>
          <exon e_start="25650" e_stop="25252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAGGTACTTTTCCTTGAATTGACTGCTTAGCTAGCGCTTAGTCATAAATTTCAAAAATTAATCTTTGAATATCTGTTTGACCATATATTTTGGATCAGATTTTGAAAATCTGTCTTAAAAAGATTTTCAAGTTCCAAAAACTGCTCCAGACCATATTTGTTTAGTCCTAGTCAAAAAATTCATGCTTAAGCACAAAAAGAGTTTCAGAAACTTAACTTGTCGAGTTTCAACTTCAAAATTTATGATCAAGAGCTAAACATGCTAAGACTGTGACAATGGTTTCTGGTTTGGTTTGCTAGTGTTAACACTCTAATCAAGATTTTGTCTTTCTTAGAACTTTTGAGCTGTCTACCTCATTTAATTAGTTGTATACTTCAATAAAAAATGGATCTTGGAATAAACAAACAAGGAGCATGATAAAATGTGTTTTTTTAAATAATATGTCTCTGTTAACAAGATGTTTGTCTAGCTTAGATTTGTGTGCTCTCATTTCATATTTTTGTTATAAAAAAGTTGTATAGTAATGAGAGTTGTGTATGTTCAATGAATGTGTAGGGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATGGTAAGTGTGAAAAATATATTTTCGATCTCTCGATTATTGGTAAATTATGATTTTGATCCTCGTGATATATGACTCAGACTTGTGTGTCTAACCTTTGGTTAGGACTAGAATTAGAATTTCTCAATAACTGAGGGACTAAAAATATTATGAACTCTAAATTTTTACCATGGTTTAAAATATTGCCACTTGCTTATGTATGATTTAAATATTTGTTGCAGATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</genome_strand>
        <mrna_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG..........................................................................................................................................................................................................................ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219924" ref_strand="+" ref_description="SGN-E219924 [cLEL-24-C12](-)">
      <seq>atttctggccaaatatttcttcataagtgctttgttagttataattattatccaaatggggctcccacaaaatcatcatcatcatcatcttcatactggtctccatctccttcagcagggacaggccaaaacacaagggaaaacagtggctataatactaggaggagcagcaggagttggttttctagtcatttgcatgctctttgcaaggaaccaaatgaagaaacatgatgattattgaagggatcagctgtgtattattattataaaaggctggcaaaagctttttatgaggtggattctttccttgtcaagagtttctacctagaaggaaaatatattttcttggaaattcctgaaaaaaagtgagggagtttgtgagctgtaattcttggaattattgggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="26952" stop="25159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26652" g_stop="26535" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26534" i_stop="25983" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25982" g_stop="25869" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="233" r_length="115" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25868" i_stop="25651" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25650" g_stop="25460" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="424" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E219924" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26652" e_stop="26535"/>
          <exon e_start="25982" e_stop="25869"/>
          <exon e_start="25650" e_stop="25460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAGGTACTTTTCCTTGAATTGACTGCTTAGCTAGCGCTTAGTCATAAATTTCAAAAATTAATCTTTGAATATCTGTTTGACCATATATTTTGGATCAGATTTTGAAAATCTGTCTTAAAAAGATTTTCAAGTTCCAAAAACTGCTCCAGACCATATTTGTTTAGTCCTAGTCAAAAAATTCATGCTTAAGCACAAAAAGAGTTTCAGAAACTTAACTTGTCGAGTTTCAACTTCAAAATTTATGATCAAGAGCTAAACATGCTAAGACTGTGACAATGGTTTCTGGTTTGGTTTGCTAGTGTTAACACTCTAATCAAGATTTTGTCTTTCTTAGAACTTTTGAGCTGTCTACCTCATTTAATTAGTTGTATACTTCAATAAAAAATGGATCTTGGAATAAACAAACAAGGAGCATGATAAAATGTGTTTTTTTAAATAATATGTCTCTGTTAACAAGATGTTTGTCTAGCTTAGATTTGTGTGCTCTCATTTCATATTTTTGTTATAAAAAAGTTGTATAGTAATGAGAGTTGTGTATGTTCAATGAATGTGTAGGGACAGGCCAAAACAC-AGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATGGTAAGTGTGAAAAATATATTTTCGATCTCTCGATTATTGGTAAATTATGATTTTGATCCTCGTGATATATGACTCAGACTTGTGTGTCTAACCTTTGGTTAGGACTAGAATTAGAATTTCTCAATAACTGAGGGACTAAAAATATTATGAACTCTAAATTTTTACCATGGTTTAAAATATTGCCACTTGCTTATGTATGATTTAAATATTTGTTGCAGATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAA</genome_strand>
        <mrna_strand>ATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCCAAAACACAAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG..........................................................................................................................................................................................................................ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGAGTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTGGGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268033" ref_strand="+" ref_description="SGN-E268033 [cLEI-15-F15]">
      <seq>tgaatctgcatctggaaacactaatttagtgtacaaaggttgtgcaaaacaggcattatcagatccatctggtgtttactcacaagccctttcaaccctttttggcactcttgtttcacaatcttcaaaatccaagttctacaaaactacaactggtactggccaaactacaataactggtctttttcagtgtagaggtgaccttactaatattgattgttacaactgtgtaaatggtttgccaatactgattgacaagctctgtggcacccctgttgctgcaagaatccagcttttaagctgttacatgctgtatgaagtctcaagcttcccacaaatctcaggaatggagatgttgtacaagacttgtagtggaaaaaatgcaccagggagtggatttgaggagaagagggatactgctttttcaacactggaaaatggaatgtctagtgctaataatggattttacacttcaaattatgagtctgtttttgttttgggacaatgtgaaagggatgtaagctcttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="27541" stop="26409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27241" g_stop="26709" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E268033" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27241" e_stop="26709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</genome_strand>
        <mrna_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAAGCTGTTACATGCTGTATGAAGTCTCAAGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAAGGGATGTAAGCTCTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607451" ref_strand="+" ref_description="SGN-E607451 [23416]">
      <seq>ctttttcctctcaaaatctacaaaacagcaaaaaaacaacaaccatggtatacatatttcaagaatctccaaaaaatggtaatggggttgtccaagaaaccatttttattcattttcttggccattctagctattttcaagaatctcccaaaaatggggttgtccaagaaaccatttttttgcattctctctgtttatttagtcattctagccattttccagaatgtagcaccagctgaatctgcatctggaaacactaatttagtgtacaaaggttgtgcaaaacaggcattatcagatccatctggtgtttactcacaagccctttcaaccctttttggcactcttgtttcacaatcttcaaaatccaagttttacaaaactacaactggtactggccaaactacaataactggtctttttcagtgtacaggtgacctctctaatattgattgttataactgtgtaaatggtttgccaatactgattgacaagctctgtggcacccctgttgctgcaagaatccagctttaaggctgttacatgctctatgaagtctctggtttcccacaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="27774" stop="26601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27474" g_stop="26901" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E607451" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27474" e_stop="26901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAA-ACAACCACCAT-GTATA-GTTTTTCAAGAATCTCTAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATGCATTTTCTTGGCCATTCTAGCCATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTTTCTGTGTTTATTTAGCCATTCTAGCAATTTTCAAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCT</genome_strand>
        <mrna_strand>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAAAACAACAACCATGGTATACATATTTCAAGAATCTCCAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATTCATTTTCTTGGCCATTCTAGCTATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTCTCTCTGTTTATTTAGTCATTCTAGCCATTTTCCAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTTTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTACAGGTGACCTCTCTAATATTGATTGTTATAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTAAGGCTGTTACATGCTCTATGAAGTCTCTGGTTTCCCACAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709383" ref_strand="+" ref_description="SGN-E709383 [FA51DA02]">
      <seq>catattttgtgaatgtaagagatcgaagagaggtccaaccacttcaatcaaattcttttacgtggagaagtaaaagtttctcgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagagataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgcccagcggttctgaaacttttgaagatgctcctgatagacaccagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacggccagacacggtatatcactccgcactcttattcgcaagagtgctgatatttctggtccttgcttgctgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="32526" stop="33715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32826" g_stop="33243" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33244" i_stop="33340" i_length="97">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33341" g_stop="33413" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="493" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33414" i_stop="33533" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33534" g_stop="33539" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="499" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E709383" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32826" e_stop="33243"/>
          <exon e_start="33341" e_stop="33413"/>
          <exon e_start="33534" e_stop="33539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTG-CCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACA-CAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAGGTAACCTTGATTTTAAAATAGTTTCTGCTATGACGTATATTATAACTTCAGTATCCTGAATACTAATATCTATCCTGTTCATTCTAATGAAGGGCAGTACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTGGTATGTTCACCTAAATTGCTGCAAATATTTGTCGTGCATACATTCCTGACTTCTATAGCAATTTTTAAAGGATCTCATCTTTCTTTTGAAGATGAATTTTCTTTATAATGTTTGTGTCAGATTACT</genome_strand>
        <mrna_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCCAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACCAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG.................................................................................................TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG........................................................................................................................ATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256488" ref_strand="+" ref_description="SGN-E256488 [cLEG-38-N21]">
      <seq>cgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagagataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgccagcggttctgaaacttttgaagatgctcctgatagacacagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacggccagacacggtatatcactccgcactcttattcgcaagagtgctgatatttctggtccttgcttgctgattactggtgataagaagggtgctgtgtttggtgggttgctcgaggcaccgttaaagcctactgcaaagaggaaataccaaggaacaaatcaatcatttgtattcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="32607" stop="34193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32907" g_stop="33243" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33244" i_stop="33340" i_length="97">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33341" g_stop="33413" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="410" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33414" i_stop="33533" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33534" g_stop="33614" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="491" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33615" i_stop="33862" i_length="248">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33863" g_stop="33893" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="522" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E256488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32907" e_stop="33243"/>
          <exon e_start="33341" e_stop="33413"/>
          <exon e_start="33534" e_stop="33614"/>
          <exon e_start="33863" e_stop="33893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAGGTAACCTTGATTTTAAAATAGTTTCTGCTATGACGTATATTATAACTTCAGTATCCTGAATACTAATATCTATCCTGTTCATTCTAATGAAGGGCAGTACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTGGTATGTTCACCTAAATTGCTGCAAATATTTGTCGTGCATACATTCCTGACTTCTATAGCAATTTTTAAAGGATCTCATCTTTCTTTTGAAGATGAATTTTCTTTATAATGTTTGTGTCAGATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAAGTAAGGAAGCAAATACATGCAGTATTTAATTTTCTTTTAACTGATACAACCTAATGTTCGAAGAGAAAACCACCAGTTTCTGGTCTAATCTTACTCTTGGTAATTGACTTGGTGCGAGTAAAGCATTTCAAACCCCCTTTACTTCAAATGAAGAGTTAAAAAGCAATTGCCTATGTCTGCATTCTCCATTCTCACTGAGCATTGGTTTTATTTCTAATGCTTATGTGGTTATTGTATTATTGTGACAGGGAACAAATCAATCATTTGTATTCACAACTC</genome_strand>
        <mrna_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG.................................................................................................TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG........................................................................................................................ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA........................................................................................................................................................................................................................................................GGAACAAATCAATCATTTGTATTCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262088" ref_strand="+" ref_description="SGN-E262088 [cLEG-58-I7]">
      <seq>cgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagttataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgccagcggttctgaaacttttgaagatgctcctgatagacacagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="32607" stop="33546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32907" g_stop="33243" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E262088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32907" e_stop="33243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG</genome_strand>
        <mrna_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGTTATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378589" ref_strand="+" ref_description="SGN-E378589 [TUS-36-G23]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcatgttcaagagttgatctgaattcattgttgtgtacatcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36553" stop="35243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36253" g_stop="36205" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36116" g_stop="35543" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="623" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E378589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36253" e_stop="36205"/>
          <exon e_start="36116" e_stop="35543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375090" ref_strand="+" ref_description="SGN-E375090 [TUS-36-G23](-)">
      <seq>gcccgtaattttaaaaatattgggggcggcctggtagggatcaaatggaggattaggctcatttccagcgttaaaacaaacagctttttcctttgcatttgctgcaagatcccagtgttatttcaagggtaggaggtcgatgaaagccctgttctttaatatgtactttgggtttttggtaaattttgggggtgggcaagctaatagacataaccccaaacttgagataacatttgaagtgcaaagtttattcggtcatcccaaaaccacccttgggttattagtattctgttggatcattcttgggtaaccatattgcccttcctggaagcaaaactttgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgccctttgtacgctattattttttttcatgttcaaaagttgatttgaattcattgttgtgtacctcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttgctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36357" stop="35220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36057" g_stop="35545" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="550"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E375090" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36057" e_stop="35545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGTAA-TCTAAGAATATTCG-GGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</genome_strand>
        <mrna_strand>GCCCGTAATTTTAAAAATATTGGGGGCGGCCTGGTAGGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAACAAACAGCTTTTTCCTTTGCATTTGCTGCAAGATCCCAGTGTTATTTCAAGGGTAGGAGGTCGATGAAAGCCCTGTTCTTTAATATGTACTTTGGGTTTTTGGTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCCCAAACTTGAGATAACATTTGAAGTGCAAAGTTTATTCGGTCATCCCAAAACCACCCTTGGGTTATTAGTATTCTGTTGGATCATTCTTGGGTAACCATATTGCCCTTCCTGGAAGCAAAACTTTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCCCTTTGTACGCTATTATTTTTTTTCATGTTCAAAAGTTGATTTGAATTCATTGTTGTGTACCTCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375091" ref_strand="+" ref_description="SGN-E375091 [TUS-36-G23]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcatgttcaagagttgatctgaattcattgttgtgtacatcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36553" stop="35247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36253" g_stop="36205" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36116" g_stop="35547" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="619" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E375091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36253" e_stop="36205"/>
          <exon e_start="36116" e_stop="35547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTG</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230968" ref_strand="+" ref_description="SGN-E230968 [cLED-5-I21]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctggtgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36553" stop="35328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36253" g_stop="36205" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36116" g_stop="35628" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="538" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E230968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36253" e_stop="36205"/>
          <exon e_start="36116" e_stop="35628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCAT</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGGTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223927" ref_strand="+" ref_description="SGN-E223927 [cLEL-19-I1](-)">
      <seq>agcaacatgtctaaatttggtccagatgcagcatatatagctgtcggatctattggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagcttttttcctttgcatctgctgcaagatcacatgtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36412" stop="35339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36112" g_stop="35640" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="496"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E223927" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36112" e_stop="35640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTA-TGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGC-TTTTTCCTTTGCATCTGCTGCAAGATCACA-GTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATT</genome_strand>
        <mrna_strand>AGCAACATGTCT-AAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATTGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTTCCTTTGCATCTGCTGCAAGATCACATGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712900" ref_strand="+" ref_description="SGN-E712900 [FB06AE09]">
      <seq>ccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36355" stop="35342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36055" g_stop="35643" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="431"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E712900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36055" e_stop="35643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</genome_strand>
        <mrna_strand>CCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224311" ref_strand="+" ref_description="SGN-E224311 [cLEL-19-I1](-)">
      <seq>gagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaggctaatagacatagcccccaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctgttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36216" stop="35339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35916" g_stop="35643" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="278" polyA_stop="296"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E224311" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35916" e_stop="35643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</genome_strand>
        <mrna_strand>GAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAGGCTAATAGACATAGCCCCCAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571926" ref_strand="+" ref_description="SGN-E571926 [30999]">
      <seq>agtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccaaggctgattggaatcacatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagtcctgttctttaatatgtaggttcttctggtttttgctaaattttggggtgggcaggctaatagacatataaccacaaacttgggataacatctgaggtgcagagtttattcagtcaatcccaaaaccagccttgggttagtattgtgttgtatcattcttgtgtaaccgtatcgtccttcctggaagcaaaactctgaatggataatgatcagttacagtacattgagatgttatgtttgtagccatagtaatattgcattaaaggattttccatgatggttactaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="37957" stop="35374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37766" g_stop="37761" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="84" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="181" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="233" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36275" g_stop="36205" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="298" r_length="65" r_score="0.859"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36116" g_stop="35698" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="718" r_length="420" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E571926" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37766" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36275" e_stop="36205"/>
          <exon e_start="36116" e_stop="35698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGAC--ATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTC-ATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACA</genome_strand>
        <mrna_strand>AGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGT---C-GC--CAAGGCTGATTGGAATCACATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTAGGTTCTTCTGGTTTTTGCTAAATTTT-GGGGTGGGCAGGCTAATAGACATATAACCACAAACTTGGGATAACATCTGAGGTGCAGAGTTTATTCAGTCAATCCCAAAACCAGCCTTGGG---TTAGTATTGTGTTGTATCATTCTTGTGTAACCGTATCGTCCTTCCTGGAAGCAAAACTCTGAATGGATAATGATCAGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556371" ref_strand="+" ref_description="SGN-E556371 [cTSD-3-E19]">
      <seq>gcaggattcggcacgagggggacttcagggtctttggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaaggtgatggccatgttgggtctgtaactgccatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaacttcaaaactttcgctccttacgatgataacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccagcgtcaaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtatcctgttgtatcattcttgtgtaacccatattgcccttcctggaagcaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="38105" stop="35422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37822" g_stop="37761" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.790"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="238" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="290" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36275" g_stop="36205" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="361" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36116" g_stop="35722" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="757" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E556371" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37822" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36275" e_stop="36205"/>
          <exon e_start="36116" e_stop="35722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATCCT-TGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAA-CCATATTGCCCTTCCTGGAAGCAAAACT</genome_strand>
        <mrna_strand>GCAGGATTCGGCACGAGGGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAAGGTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATCCTGTTGTATCATTCTTGTGTAACCCATATTGCCCTTCCTGGAAGCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586159" ref_strand="+" ref_description="SGN-E586159 [60210]">
      <seq>cggcacgaggatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagagtactatctcgagggtaggaggtcgatgagtcctgttctttaatatgtaggttcttctggtttttgctaaattttggggtgggcaggctaatagacatataaccacaaacttgggataacatctgaggtgcagagtttattcagtcatcccaaaaccagccttgggttagtattctgttgtatcattcttgtgtaaccatatcgtccttcctggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36535" stop="35427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36245" g_stop="36205" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="0.78"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36116" g_stop="35727" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="433" r_length="392" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E586159" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36245" e_stop="36205"/>
          <exon e_start="36116" e_stop="35727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCAC--AGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGAC--ATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCA</genome_strand>
        <mrna_strand>CGGCACGAGGATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGAGTACTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTAGGTTCTTCTGGTTTTTGCTAAATTTT-GGGGTGGGCAGGCTAATAGACATATAACCACAAACTTGGGATAACATCTGAGGTGCAGAGTTTATTCAGTCATCCCAAAACCAGCCTTGGG---TTAGTATTCTGTTGTATCATTCTTGTGTAACCATATCGTCCTTCCTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398559" ref_strand="+" ref_description="SGN-E398559 [TUS-19-I3]">
      <seq>caaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatatacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36554" stop="35442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36254" g_stop="36205" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36116" g_stop="35743" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="424" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E398559" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36254" e_stop="36205"/>
          <exon e_start="36116" e_stop="35743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATT</genome_strand>
        <mrna_strand>CAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATATACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237598" ref_strand="+" ref_description="SGN-E237598 [cLED-19-A5]">
      <seq>cagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="36389" stop="35553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36089" g_stop="35853" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E237598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36089" e_stop="35853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAG</genome_strand>
        <mrna_strand>CAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408175" ref_strand="+" ref_description="SGN-E408175 [PPI-10-G10]">
      <seq>gtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttacgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttgggaggctcagatatacgagtttatcaagtcgccagtgtcaaggctgattggaatcacatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagagtactatctcgagggtaggaggtcgatgagtcctgttctttaatatgtanggtcttctggtttttgctaaattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="37957" stop="35570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37772" g_stop="37761" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="90" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="187" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="239" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36275" g_stop="36205" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="310" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36116" g_stop="35870" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="561" r_length="251" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E408175" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37772" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36275" e_stop="36205"/>
          <exon e_start="36116" e_stop="35870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACA--GTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGG</genome_strand>
        <mrna_strand>GTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTACGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTGGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGTGTCAAGGCTGATTGGAATCACATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGAGTACTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTANGGTCTTCTGGTTTTTGCTAAATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250297" ref_strand="+" ref_description="SGN-E250297 [cLEG-6-K14]">
      <seq>ttttatgatcttgcttctggtttatgccttacacatgtagcagatgcttcagaatctgagggctatacttctgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctttggtcaagatatgggatgtaaaaagtcatgcaaatgttgcaaaatttgatggccatgttgggtctgtaactgccatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaacttcaaaactttcgctccttacgatgataacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttagcgaggccccttccccgatatacgagtttatcaagtcgccagcgtcaaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttgggccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="38328" stop="35642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38028" g_stop="37993" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37877" g_stop="37761" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="153" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="231" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="380" r_length="52" r_score="0.827"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36807" i_stop="36698" i_length="110">
            <donor d_prob="0.996" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36697" g_stop="36691" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="387" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36690" i_stop="36276" i_length="415">
            <donor d_prob="0.660" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36275" g_stop="36205" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="458" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36116" g_stop="35942" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="633" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E250297" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38028" e_stop="37993"/>
          <exon e_start="37877" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36697" e_stop="36691"/>
          <exon e_start="36275" e_stop="36205"/>
          <exon e_start="36116" e_stop="35942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAG-GAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGC</genome_strand>
        <mrna_strand>TTTTATGATCTTGCTTCTGGTTTATGCCTTACACAT...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAT...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGCGAGGC-CCCTTCCCCG..............................................................................................................ATATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGGCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439538" ref_strand="+" ref_description="SGN-E439538 [cSTA-12-F9]">
      <seq>ctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccatcctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttacgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccagtgtcaaggctgattggaatcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="39324" stop="35933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="92" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38097" g_stop="37993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="197" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37877" g_stop="37761" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="314" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="392" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="489" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="541" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36275" g_stop="36233" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="584" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E439538" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="37993"/>
          <exon e_start="37877" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36275" e_stop="36233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATC</genome_strand>
        <mrna_strand>ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCATCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTACGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGTGTCAAGGCTGATTGGAATCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582682" ref_strand="+" ref_description="SGN-E582682 [8315]">
      <seq>actaagtggtcattcaaagagggttaccagtgttaagtttgcggctgagggtgaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcacgaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaattgaccatagtggaagttatcttgccttaggaggctcagatatacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="40104" stop="36508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39804" g_stop="39783" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39645" g_stop="39586" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38097" g_stop="37993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="262" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37877" g_stop="37761" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="458" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="555" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="606" r_length="51" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E582682" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39804" e_stop="39783"/>
          <exon e_start="39645" e_stop="39586"/>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="37993"/>
          <exon e_start="37877" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCA-GAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</genome_strand>
        <mrna_strand>ACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAGTTTGCGGCTGAGGGTGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCACGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAA-TTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453854" ref_strand="+" ref_description="SGN-E453854 [cSTS-21-I12]">
      <seq>ggagaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcacaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="39918" stop="36506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39618" g_stop="39586" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="108" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38097" g_stop="37993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="213" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37877" g_stop="37761" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="330" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="505" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="557" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E453854" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39618" e_stop="39586"/>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="37993"/>
          <exon e_start="37877" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</genome_strand>
        <mrna_strand>GGAGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317821" ref_strand="+" ref_description="SGN-E317821 [cTOA-30-D23]">
      <seq>acaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgctactggtggagtcgattcaaacgctgtggtctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactagtggtctctggttcagcagataagacagttcgtgtgtggcaaagttccgaaaatggaaattatgactgtaggcatgtcttgaaggatcatactgcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttctgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="41416" stop="37485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41116" g_stop="41055" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="184" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39878" g_stop="39783" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="397" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39645" g_stop="39586" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="457" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="532" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38097" g_stop="37993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="637" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37877" g_stop="37785" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="730" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E317821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41116" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
          <exon e_start="39878" e_stop="39783"/>
          <exon e_start="39645" e_stop="39586"/>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="37993"/>
          <exon e_start="37877" e_stop="37785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTC</genome_strand>
        <mrna_strand>ACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307718" ref_strand="+" ref_description="SGN-E307718 [cLEY-16-C14]">
      <seq>ggttacttgcccaggctgaaagacaaatacccatggcaggcactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgctactggtggagtcgattcaaacgctgtggtctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactactggtctctggttcagcagataagacagttcgtgtgtggcaaagttccgaaaatggaaattatgactgtaggcatgtcttgaaggatcatactgcagaggtgcaagctgtcactgtccatgcaaccaataattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="41438" stop="37759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41138" g_stop="41055" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="206" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="323" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39878" g_stop="39783" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="419" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39645" g_stop="39586" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="479" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="554" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38097" g_stop="38059" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="593" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E307718" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41138" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
          <exon e_start="39878" e_stop="39783"/>
          <exon e_start="39645" e_stop="39586"/>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="38059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTT</genome_strand>
        <mrna_strand>GGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGGCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTACTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572079" ref_strand="+" ref_description="SGN-E572079 [31176]">
      <seq>tgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacattggcccctgtggatgctttggcgagatatacccaactgaatagttttcctcttcacaaaaccaacaaaccgggcattttgtctttggatattcattatgctaaggacataattgctactggtggagttgattcaaatgctgtgatctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="42800" stop="38655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42500" g_stop="42464" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="124" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="266" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="388" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="505" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39878" g_stop="39783" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="601" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39645" g_stop="39586" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="661" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39022" g_stop="38953" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="731" r_length="70" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E572079" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42500" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
          <exon e_start="39878" e_stop="39783"/>
          <exon e_start="39645" e_stop="39586"/>
          <exon e_start="39022" e_stop="38953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTG</genome_strand>
        <mrna_strand>TGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCCCTGTGGATGCTTTGGCGAGATATACCCAACTGAATAGTTTTCCTCTTCACAAAACCAACAAACCGGGCATTTTGTCTTTGGATATTCATTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTTGATTCAAATGCTGTGATCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482474" ref_strand="+" ref_description="SGN-E482474 [cSTD-22-G16]">
      <seq>ccagactgagagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacaggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacattggcccctgtggatgctttggcgagatatacccaactgaatagttttcctcttcaacaaaaacaacaaaccgggcattttgtctttggatattcattatgctaaggacataattgctactggtggagttgattccaatgctgtgatctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="41428" stop="39531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41128" g_stop="41055" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="196" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="314" r_length="118" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39878" g_stop="39831" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="362" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E482474" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41128" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
          <exon e_start="39878" e_stop="39831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTC-ACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGAT</genome_strand>
        <mrna_strand>CCAGACTGAGAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACAGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCCCTGTGGATGCTTTGGCGAGATATACCCAACTGAATAGTTTTCCTCTTCAACAAAAACAACAAACCGGGCATTTTGTCTTTGGATATTCATTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTTGATTCCAATGCTGTGATCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738822" ref_strand="+" ref_description="SGN-E738822 [LC15AD01]">
      <seq>actctttctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44056" stop="40232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43756" g_stop="43685" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="79" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="165" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="237" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="300" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="529" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="651" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="768" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E738822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43756" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576329" ref_strand="+" ref_description="SGN-E576329 [59529]">
      <seq>tctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaaccaaaggacaaagcgacagataccgggcaacatttggcctctgtggatgcttttggcgacgatatacccaattgaatagtttcctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44072" stop="40542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43772" g_stop="43685" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="174" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="246" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="396" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="538" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="661" r_length="123" r_score="0.934"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40595" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="731" r_length="70" r_score="0.791"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E576329" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43772" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAA-CAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACC-CGCAACA-TTGGCCCCTGTGGATGC-TGTGGCGA-GATATACCCAACTGAATAGTTTTCCCCTTC</genome_strand>
        <mrna_strand>TCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACCAAAGGACAAAGCGACAG.......................................................................................................................................................................................ATACCGGGCAACATTTGGCCTCTGTGGATGCTTTTGGCGACGATATACCCAATTGAATAG-TTTCCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315580" ref_strand="+" ref_description="SGN-E315580 [cTOA-22-I4]">
      <seq>tcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgangatgtgggccctgatggaaagaaaatcgccctgngatatcacactctgtcattgagactcttactgaaatgtatgctggtctttcacacaaaggaaaaaacgacagatacccgcaacattggccccctgtgatgctgtggcgagatataccaactgaatagttttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44070" stop="40297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43770" g_stop="43685" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="172" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="244" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="394" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="536" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="656" r_length="120" r_score="0.943"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40597" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="720" r_length="64" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E315580" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43770" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTG-AATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCT</genome_strand>
        <mrna_strand>TCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGANGATGTGGGCCCTGATGGAAAGAAAA-TCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAAATGT-ATGCTGGTCTTTCAC-ACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCCTGTGATGCTGTGGCGAGATATA-CCAACTGAATAGTTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484749" ref_strand="+" ref_description="SGN-E484749 [cSTE-14-J18]">
      <seq>ctctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaagcgacagataccggcaacattggcctctgtggatgctttggcgagatatacccaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44067" stop="40310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43767" g_stop="43685" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="169" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="241" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="304" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="533" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="655" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40610" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="707" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E484749" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43767" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGA</genome_strand>
        <mrna_strand>CTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAGCGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCTCTGTGGATGCTTTGGCGAGATATACCCAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480339" ref_strand="+" ref_description="SGN-E480339 [cSTD-13-H21]">
      <seq>cctcgctctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaaggggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgangatacgggccctgatggaaagaaaattcgccctgngatatcacactctgtcattgagactcttactgaatgtnatgctgggtctttcacaacaaagggaaaagcgacagataccgggcacattggcctctgtggatgctttggcgagatataccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44078" stop="40315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43778" g_stop="43685" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="252" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="315" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="545" r_length="143" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="668" r_length="123" r_score="0.910"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40615" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="715" r_length="47" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E480339" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43778" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA-GGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCT-GGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCA</genome_strand>
        <mrna_strand>CCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGANGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAATGTNATGCTGGGTCTTTCACAACAAAGGGAAAAGCGACAG.......................................................................................................................................................................................ATACCGGGCACATTGGCCTCTGTGGATGCTTTGGCGAGATATACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602371" ref_strand="+" ref_description="SGN-E602371 [55350]">
      <seq>ctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaggcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgggcaacattggcccctgtgggatgctttggcgagatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44056" stop="40319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43756" g_stop="43685" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="158" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="293" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="522" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="644" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40619" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="690" r_length="46" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E602371" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43756" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCC--GCAACATTGGCCCCTGT-GGATGCTGTGGCGAGATATA</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAGGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGGGCAACATTGGCCCCTGTGGGATGCTTTGGCGAGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456300" ref_strand="+" ref_description="SGN-E456300 [cSTS-29-I23]">
      <seq>attgaccggcagatgaacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgngatatcacactctgtcattgagactcttactgaatgtnaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="42984" stop="40542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42684" g_stop="42645" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="105" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="192" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="334" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="457" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40661" g_stop="40649" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="470" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E456300" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42684" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGA-CGGCAGATG-ACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGT-AATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACAT</genome_strand>
        <mrna_strand>ATTGACCGGCAGATGAACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAATGTNAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339667" ref_strand="+" ref_description="SGN-E339667 [cTOE-16-G21]">
      <seq>tccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44055" stop="40565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43755" g_stop="43685" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="157" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="229" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="521" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40865" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="623" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E339667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43755" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCAC</genome_strand>
        <mrna_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329103" ref_strand="+" ref_description="SGN-E329103 [cTOC-24-D18]">
      <seq>tccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44055" stop="40568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43755" g_stop="43685" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="157" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="229" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="521" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40868" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="620" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E329103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43755" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTT</genome_strand>
        <mrna_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721925" ref_strand="+" ref_description="SGN-E721925 [FC15CG09]">
      <seq>tcggccgaattgctcgctctcactctgcctcttctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44077" stop="40570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43789" g_stop="43685" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="191" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="263" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="413" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="555" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40870" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="652" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E721925" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43789" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCT</genome_strand>
        <mrna_strand>TCGGCCGAATTGCTCGCTCTCACTCTGCCTCTTCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469765" ref_strand="+" ref_description="SGN-E469765 [cSTB-14-K13]">
      <seq>ctcgctctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44077" stop="40753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43777" g_stop="43685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="179" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="251" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="314" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="543" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40955" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="555" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E469765" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43777" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATG</genome_strand>
        <mrna_strand>CTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335393" ref_strand="+" ref_description="SGN-E335393 [cTOE-2-G18]">
      <seq>catcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44062" stop="40777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43762" g_stop="43685" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="164" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="236" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="299" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41077" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="506" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E335393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43762" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACT</genome_strand>
        <mrna_strand>CATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200582" ref_strand="+" ref_description="SGN-E200582 [cLEB-8-P22]">
      <seq>gcacgagtctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44071" stop="40785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43774" g_stop="43685" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="175" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="247" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41085" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="509" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E200582" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43774" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTG</genome_strand>
        <mrna_strand>GCAC-GAGTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582029" ref_strand="+" ref_description="SGN-E582029 [7662]">
      <seq>ctccttttgtgctacttaaaccctagctctacctctttgcctttctctctactttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgagagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgattaaaactggcaagatagttaagagccccgacgctgtacaggctgctagcattcctgggatgttgggaatgttccaacatagaatgggatggcctgatgctgtcaagattttgcattggaacaatcaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaacgggatgaggcaagggggttgcttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44056" stop="40827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43756" g_stop="43685" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="159" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="232" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="299" r_length="67" r_score="0.873"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41127" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E582029" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43756" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCT-CTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTG-TTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAA-A-CCCCGAC-CTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAA-ATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAA-ATTTTGCATTGGAACAA-CAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAA-GGGATGAGGCAAGGGGGTTACTTGCCC</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTACTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTACTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAGAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGATTAAAACTGGCAAG......................................................................................................................ATAGTTAAGAGCCCCGACGCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAACATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAGATTTTGCATTGGAACAATCAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAACGGGATGAGGCAAGGGGGTTGCTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561617" ref_strand="+" ref_description="SGN-E561617 [17705]">
      <seq>cacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaggcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="43863" stop="40840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43701" g_stop="43685" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="103" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="238" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41140" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="382" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E561617" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43701" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGG</genome_strand>
        <mrna_strand>CACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAGGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303071" ref_strand="+" ref_description="SGN-E303071 [cLEW-26-L7]">
      <seq>atcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctgtcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44061" stop="40842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43761" g_stop="43685" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="163" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="235" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41142" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="440" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E303071" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43761" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA</genome_strand>
        <mrna_strand>ATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTGTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445819" ref_strand="+" ref_description="SGN-E445819 [cSTA-18-P7]">
      <seq>cttttgtgctgcttaaaccctagctctacccctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtaatttctaagaagtccggactccttttcgagaagcgttgaattgaaagacatatctctgattatggcaaatgccctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcancatgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44053" stop="41801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43753" g_stop="43685" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="155" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="227" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E445819" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43753" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>CTTTTGTGCTGCTTAAACCCTAGCTCTACCCCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAATTTCTAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTGAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGCCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366447" ref_strand="+" ref_description="SGN-E366447 [cLPT-1-N4]">
      <seq>ttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcancatgatgctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44052" stop="41801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43752" g_stop="43685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="154" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="226" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E366447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43752" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365956" ref_strand="+" ref_description="SGN-E365956 [cLPT-11-E4]">
      <seq>ttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44052" stop="41800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43752" g_stop="43685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="154" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="226" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E365956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43752" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438742" ref_strand="+" ref_description="SGN-E438742 [cSTA-9-M20]">
      <seq>ctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44034" stop="41800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43734" g_stop="43685" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="136" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="208" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="271" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="358" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E438742" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43734" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>CTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447003" ref_strand="+" ref_description="SGN-E447003 [cSTA-24-C19]">
      <seq>tatctctgattatggcaaatgtcctattactggagagccattgacggcagatgaccattatccctgttaaaactggcaagaaagttaaacccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaaccacaattacctactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="43016" stop="41800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="80" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="144" r_length="64" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E447003" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGA-CATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAA-CCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACCATTATCCCTGTTAAAACTGGCAAG......................................................................................................................AAAGTTAAACCCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACCACAATTACCTACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338859" ref_strand="+" ref_description="SGN-E338859 [cTOE-21-K23]">
      <seq>cctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44025" stop="41841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43725" g_stop="43685" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="127" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="199" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="308" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E338859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43725" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAAT</genome_strand>
        <mrna_strand>CCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327772" ref_strand="+" ref_description="SGN-E327772 [cTOC-20-D21]">
      <seq>ggtttggtattcttcttctagaatcaagattcgtctaaaaacaggtattttgttgttggaggtgaaagtggtggatgaggtttcttccatgtggtatacttttgtagaagtaatttttatttctttaataaccaaagtttcttgcttttctttctctactttgttttaaaatagactttttgaaggactaattgtatatcttatctttgtttagtggggttgtcttgaaattggctaacattaagtatatctttatgtggggtttgttgtttctgaaggggattgaaagagcttatagcttgatctgcaaggtgaatttgaagtggggtttcatatttttttggagtgctggtggatttcggtctctttgtataaccgtgtttatactgtggaacgtgaaggaagaaagatcattttatctgatttctaatgtttaatcagcttggatgtggaatatggacaacagaaacatggactatgatgaacctattattgaacgtttattgcagcttgtgaacaacgaagaacaagcagaggagaatatttgtttgtcgacaagattagtagaagagttagaacctcagcacctacggagattagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="63822" stop="65589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64122" g_stop="64467" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64468" i_stop="65031" i_length="564">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65032" g_stop="65289" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="604" r_length="258" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E327772" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64122" e_stop="64467"/>
          <exon e_start="65032" e_stop="65289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAGGTGAGTGAGGAAGTTATTGAACTTTTGATTTTACTTCTGATGTTTGATGTTTAGTACTTTGCTTACTATTTATTGAACATGTTATGTTTGTATTTTTTGTGCAATTTGTCTAGGAGTTGTTGCAAACTTGCAATTGTTTATACTGTTTTTGTTGATTCTTGAAATGTAACTAGGATCTGCTTAAGCTTAATGAGATATATATATATAACACTGTTCATTCTTCTTTGTTCTTTCTTTTCACTGTTTGTATCTCTCCCAGCTATTGGGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAGGAGATTTGTTGCCAAAGATTTGATTTTTTTTTCTTCTGTTTTTCAGCTGTTACAGTCTGAGACTTGTTTTGTAGACGGGGAATCTTAGTAGCTAAGTTGATTGGCTACCTGAGTTCGATTCCCCATTTTGTAATCTTGTTCACCTACAAAACACTTGTTTTGTATACCCTCTTGTAGCTCATTATTTGATCAAGTTTTAATCTTTTGAGTAATTTAACTTGTAAAGATTCTGTCTTCTGATTTATGCATAAAAATTCTTGTAGTGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAA</genome_strand>
        <mrna_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGGTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAACCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTATATCTTTATGTGGGGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTATAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAACGTGAAGGAAGAAAGATCATTTTATCTGATTTCTAATGTTTAATCAGCTTGGATGTGGAATATGGACAACAGAAACATGGACTATGATGAACCTATTATTGAACGTTTATTGCAGCTTGTGAACAACGAAGAACAAGCAGAGGAGAATATTTGTTTGTCGACAAGATTAGTAGAAGAGTTAGAACCTCAGCACCTACGGAGATTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478921" ref_strand="+" ref_description="SGN-E478921 [cSTD-7-P5]">
      <seq>gttattttgtagttggaggtgaaagtggtggatgaggtttcttccatgtggggattggaagagcataaagcttgatctgagtggtgaatttgaagtggggtttcatttttttggagcctatttccccaaattagaattgggacgatacaagtgctggtggattttggtctctttgtataaaccgtatttatatcgcagaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="63865" stop="65835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64165" g_stop="64214" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64215" i_stop="64399" i_length="185">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64400" g_stop="64467" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64468" i_stop="64732" i_length="265">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64733" g_stop="64768" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="151" r_length="35" r_score="0.556"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64769" i_stop="65031" i_length="263">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.577" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65032" g_stop="65534" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="654" r_length="503" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E478921" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64165" e_stop="64214"/>
          <exon e_start="64400" e_stop="64467"/>
          <exon e_start="64733" e_stop="64768"/>
          <exon e_start="65032" e_stop="65534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAGGTGAGTGAGGAAGTTATTGAACTTTTGATTTTACTTCTGATGTTTGATGTTTAGTACTTTGCTTACTATTTATTGAACATGTTATGTTTGTATTTTTTGTGCAATTTGTCTAGGAGTTGTTGCAAACTTGCAATTGTTTATACTGTTTTTGTTGATTCTTGAAATGTAACTAGGATCTGCTTAAGCTTAATGAGATATATATATATAACACTGTTCATTCTTCTTTGTTCTTTCTTTTCACTGTTTGTATCTCTCCCAGCTATTGGGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAGGAGATTTGTTGCCAAAGATTTGATTTTTTTTTCTTCTGTTTTTCAGCTGTTACAGTCTGAGACTTGTTTTGTAGACGGGGAATCTTAGTAGCTAAGTTGATTGGCTACCTGAGTTCGATTCCCCATTTTGTAATCTTGTTCACCTACAAAACACTTGTTTTGTATACCCTCTTGTAGCTCATTATTTGATCAAGTTTTAATCTTTTGAGTAATTTAACTTGTAAAGATTCTGTCTTCTGATTTATGCATAAAAATTCTTGTAGTGCTGGTGGATTTCGGTCTCTTTGTAT-AACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTC</genome_strand>
        <mrna_strand>GTTATTTTGTAGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTG.........................................................................................................................................................................................GGGATTGGAAGAGCATAAAGCTTGATCTGAGTGGTGAATTTGAAGTGGGGTTTC--ATTTTTTTGGAG.........................................................................................................................................................................................................................................................................CCTATTTCCCCA-AATTAGAATTGGGACGATACAAG.......................................................................................................................................................................................................................................................................TGCTGGTGGATTTTGGTCTCTTTGTATAAACCGTATTTATATCGCAGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441917" ref_strand="+" ref_description="SGN-E441917 [cSTA-31-F19]">
      <seq>cgaggcgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="64774" stop="65873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65067" g_stop="65573" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E441917" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65067" e_stop="65573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACT</genome_strand>
        <mrna_strand>CGAGGC-GCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441916" ref_strand="+" ref_description="SGN-E441916 [cSTA-31-F19]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattttaaagagtcctttacttaatcaatttggatctgttaactgtactgttgattctggaaagggaaattacatgacagtgaagaaagcagtttttncgatttcatgagctctcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="64774" stop="66044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65744" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E441916" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCG</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGGAAAT-TACATGACAGTGAAGAAAGCAGTTTTTNCGATTTCATGAGCTCTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418486" ref_strand="+" ref_description="SGN-E418486 [STM-27-L13]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattgtaaagagtcctttacttaatcaatttggatctgttaactgtactgttgattctggaaaggaaaatatacatgacagtgaagaagcaacgttttccgatttcatgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="64774" stop="66039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65739" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E418486" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTC</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTGTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATACATGACAGTGAAGAAGCAACGTTTTCCGATTTCATGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418427" ref_strand="+" ref_description="SGN-E418427 [STM-27-B9]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatagaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctacgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattttaaagagttctttacttaataattttggatctggtaactgtactgttgattctggaaaggaaaatatacatgacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="64774" stop="66009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65709" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E418427" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGA</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATAGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTACGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTTCTTTACTTAATAATTTTGGATCTGGTAACTGTACTGTTGATTCTGGAAAGGAAAATATACATGACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418472" ref_strand="+" ref_description="SGN-E418472 [STM-27-J13]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcataactggtagtaagagtatgctgaacattttaaagagtcctttacttaatcaatttggatctgttaactgtactgntgattctggaaaggaaaatatacatgacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="64774" stop="66009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65709" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E418472" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGA</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGC-ATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGNTGATTCTGGAAAGGAAAATATACATGACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726439" ref_strand="+" ref_description="SGN-E726439 [LA11DC05]">
      <seq>aagatacttccttcgctgccttgaattggtacacatacactccacatgtaacttctcttcaaagatgcaaattatatcaaagagttcaggttcaagagaggttagaaatgaaaatctccacactaatggtaatctggcgaccgaatgtcctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgctataactggtagtaagagtatgctgaacattttaaagagtcccttacttaatcaatttggatctgttaactgtactgttgattctggaaaggaaaatataaatgacagtgaagaaggaagtttttctgatttcatgagctctcccggtggttttagtgtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65086" stop="66517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65386" g_stop="66217" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E726439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65386" e_stop="66217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATC</genome_strand>
        <mrna_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728523" ref_strand="+" ref_description="SGN-E728523 [LA18AD08]">
      <seq>gtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacaaaaagttggcaaagaaagtaacagatgtgttcagaactagtcagtcttataagcagagaagcttatccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaaagtaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctaaaacagacatgctgggccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65456" stop="66951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65756" g_stop="66651" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E728523" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65756" e_stop="66651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTC</genome_strand>
        <mrna_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAAGTAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTA-AAACAGACATGCTGGGCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725867" ref_strand="+" ref_description="SGN-E725867 [LA08CC07]">
      <seq>gtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacanaaagttggcaaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65456" stop="66549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65756" g_stop="66249" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E725867" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65756" e_stop="66249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGT</genome_strand>
        <mrna_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACANAAAGTTGGCAAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702829" ref_strand="+" ref_description="SGN-E702829 [FA19DC05]">
      <seq>gttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacaaaaagttggcaaagaaagtaacagatgtgttcagaactagtcagtcttataagcagagaagcttatccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacctttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagtaagatgacaccaagtatggtatctgttgttatagctctctttctttaaagaagtcagacaaatcgaccattagaaatggntcaaagatataacatatgattgtctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65874" stop="67488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66174" g_stop="66799" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67188" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="904" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E702829" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66174" e_stop="66799"/>
          <exon e_start="66910" e_stop="67188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTT</genome_strand>
        <mrna_strand>GTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACCTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTT-AAAGAAGTCAGACAAATCGACCATTAGAAATGGNTCAAAGATATAACATATGATTGTCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688899" ref_strand="+" ref_description="SGN-E688899 [t3_tus_55_E15]">
      <seq>tcccagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgcccaattttgagctggctgccgttgttaccagagatcctcttaatgacagctcccaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65996" stop="67348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66296" g_stop="66799" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67048" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="643" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E688899" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66296" e_stop="66799"/>
          <exon e_start="66910" e_stop="67048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCC</genome_strand>
        <mrna_strand>TCCCAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCCAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCCAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551101" ref_strand="+" ref_description="SGN-E551101 [TUS-55-E15]">
      <seq>tcccagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgcccaattttgagctggctgccgttgttaccagagatcctcttaatgacagctcccaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65996" stop="67329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66296" g_stop="66799" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67029" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="624" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E551101" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66296" e_stop="66799"/>
          <exon e_start="66910" e_stop="67029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATT</genome_strand>
        <mrna_strand>TCCCAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCCAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCCAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260774" ref_strand="+" ref_description="SGN-E260774 [cLEG-55-M5]">
      <seq>ccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65997" stop="67378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66297" g_stop="66799" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67078" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="672" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E260774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66297" e_stop="66799"/>
          <exon e_start="66910" e_stop="67078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTA</genome_strand>
        <mrna_strand>CCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613184" ref_strand="+" ref_description="SGN-E613184 [62955]">
      <seq>tgattgtggaggctgggatctcgggtgccccctcacagttcttaacactggaaatgaagcttcatcacagactacatctggagactgtcaaacttttgatctctatatacagggttcaaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtcttttgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagtaagatgacacaaagtatggtatctgttgttatagttctctacttttaaaagaagtcagacaaatcgaccattagaaatggttcgaagatataacatctgattgtctctcatgttcattaatttatcttagctgctagattattagataggaaattcgtttgttagctcagattattattttgttagtgtaatgaatgatacagtttagaagcagcggtcagtgtacaaatcgtctattggatggggggacatccatttgtaccgttgattaagttactgaaagtcgaaacacattgatttttgagtggtttgttgatcctttgatctttagtgcaactttcaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="66388" stop="67707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66688" g_stop="66799" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67407" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="627" r_length="515" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E613184" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66688" e_stop="66799"/>
          <exon e_start="66910" e_stop="67407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTG--TCTC----TC------TTAGC-T-G--G-TAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</genome_strand>
        <mrna_strand>TGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAACACTGGAAATGAAGCTTCATCACAGACTACATCTGGAGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTCAAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTTGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACAAAGTATGGTATCTGTTGTTATAGTTCTCTACTTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCGAAGATATAACATCTGATTGTCTCTCATGTTCATTAATTTATCTTAGCTGCTAGATTATTAGATAGGAAATTCGTTTGTTAGCTCAGATTATTATTTTGTTAGTGTAATGAATGATACAGTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTACTGAAAGTCGAAACACATTGATTTTTGAGTGGTTTGTTGATCCTTTGATCTTTAGTGCAACTTTCAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338495" ref_strand="+" ref_description="SGN-E338495 [cTOE-15-D24]">
      <seq>taatgtaccgtactttcaggatccaaaaatgtcgaagcgagggcgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80567" stop="83643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80867" g_stop="80907" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="326" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="368" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83343" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="501" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E338495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80867" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTG</genome_strand>
        <mrna_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG...........................................................................................GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462918" ref_strand="+" ref_description="SGN-E462918 [cPRO-13-G17]">
      <seq>caaaaatgtcgaagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgatttaaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaggataatgctggtgtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactctgaactactaagagttaacctgcagattttgataccttgtatttgtaagtgctgttattgtcacatatataaacaaatgcagcaatgttgtattgctctgagatttaaaagttcatataatacccacttatttgctactaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80590" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80890" g_stop="80907" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="303" r_length="285" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="345" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="573" r_length="228" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="584"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E462918" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80890" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAA-GAGT--TAGTTAACCTGCAG-TTTTGATACCTTTTATTTG-GAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CAAAAATGTCGAAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGATTTAAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTCTGAACTACTAAGAGTTAACCTGCAGATTTTGATACCTTGTATTTGTAAGTGCTGTTATTGTCACATATATAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTTAAAAGTTCATATAATACCCACTTA-TTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404348" ref_strand="+" ref_description="SGN-E404348 [PPC-13-M12]">
      <seq>gtcgaagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgatttaaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaggataatgctggtgtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactctgaactactaagagttaacctgcagattttgataccttgtatttgtaagtgctgttattgtcacatatataaacaaatgcagcaatgttgtattgctctgagatttaaaagttcatataatacccacttatttgctactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80697" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80897" g_stop="80907" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="296" r_length="285" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="338" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="566" r_length="228" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E404348" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80897" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAA-GAGT--TAGTTAACCTGCAG-TTTTGATACCTTTTATTTG-GAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>GTCGAAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGATTTAAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTCTGAACTACTAAGAGTTAACCTGCAGATTTTGATACCTTGTATTTGTAAGTGCTGTTATTGTCACATATATAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTTAAAAGTTCATATAATACCCACTTA-TTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614721" ref_strand="+" ref_description="SGN-E614721 [64512]">
      <seq>tgagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgaattgaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaagataatgctggtgtgattgtgaatcccaaaggtgaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttaacctggagattttgataacttttatttggaagtgctgttattgtcacatatacaaacaaatgcagcaatgttgtattgctctgagattcaaanattcatataatacccacttatttgctacttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80697" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80900" g_stop="80907" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="293" r_length="285" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83437" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="559" r_length="224" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E614721" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80900" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAG-TTTTGATACCTTTTATTTGG-AGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATA</genome_strand>
        <mrna_strand>TGAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGAATTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGTGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACT-A-AG--AGTTAACCTGGAGATTTTGATAACTTTTATTTGGAAGTGCTGTTATTGTCACATATACAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTCAAANATTCATATAATACCCACTTA-TTTGCTACTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735157" ref_strand="+" ref_description="SGN-E735157 [LB14CD04]">
      <seq>agcgagggcgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80697" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80902" g_stop="80907" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="291" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="333" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="557" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="592"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E735157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80902" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>AGCGAG...........................................................................................GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549903" ref_strand="+" ref_description="SGN-E549903 [TUS-6-G23]">
      <seq>cccgggctgcaggattccgcccagggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80691" stop="83729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="304" r_length="285" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="346" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83429" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="565" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E549903" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCT</genome_strand>
        <mrna_strand>CCCAGGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320827" ref_strand="+" ref_description="SGN-E320827 [cTOB-27-B3]">
      <seq>cgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgcaagtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagactacgtcaaccttggagactaaaggatggtgttttcatgtactttgaacataatgctggagtgattgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80701" stop="83324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81001" g_stop="81283" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83024" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="305" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E320827" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81001" e_stop="81283"/>
          <exon e_start="83003" e_stop="83024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAA</genome_strand>
        <mrna_strand>CGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGCAAGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACTACGTCAACCTTGGAGACTAAAGGATGGTGTTTTCATGTACTTTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549865" ref_strand="+" ref_description="SGN-E549865 [TUS-6-G22](-)">
      <seq>gaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtaggctctaagattttaagtcatatatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80705" stop="83684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81005" g_stop="81283" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="321" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83416" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="523" r_length="202" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E549865" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81005" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACC</genome_strand>
        <mrna_strand>GAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTA-GGCTCTAAGATTT-TAAG-TCATAT-ATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243802" ref_strand="+" ref_description="SGN-E243802 [cLED-35-B12]">
      <seq>aggttctgccggaaacaaattccggatgtcactgggtttaccggcggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaagtgatatgggaatggctactgnaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80706" stop="83319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81006" g_stop="81283" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83019" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="295" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E243802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81006" e_stop="81283"/>
          <exon e_start="83003" e_stop="83019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATT</genome_strand>
        <mrna_strand>AGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGCGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAAGTGATATGGGAATGGCTACTGNAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349217" ref_strand="+" ref_description="SGN-E349217 [cTOS-2-O8]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80747" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81047" g_stop="81283" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E349217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81047" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349960" ref_strand="+" ref_description="SGN-E349960 [cTOS-4-A7]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80747" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81047" g_stop="81283" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E349960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81047" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352487" ref_strand="+" ref_description="SGN-E352487 [cTOS-9-M9]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80747" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81047" g_stop="81283" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E352487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81047" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713720" ref_strand="+" ref_description="SGN-E713720 [FB09BH01]">
      <seq>catcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaatatcactgtcatttacttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80799" stop="83757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81099" g_stop="81283" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="227" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83211" g_stop="83456" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="473" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="485"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E713720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81099" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</genome_strand>
        <mrna_strand>CATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304545" ref_strand="+" ref_description="SGN-E304545 [cLEX-11-M20]">
      <seq>aaatctcaaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85423" stop="87079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85723" g_stop="86119" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86779" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="439" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E304545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85723" e_stop="86119"/>
          <exon e_start="86738" e_stop="86779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAG</genome_strand>
        <mrna_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355391" ref_strand="+" ref_description="SGN-E355391 [cTOS-25-M11]">
      <seq>aaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttaaagttgttcaatcatcttaaagaactaggagttcaaatctttcttgtttcttcgagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgcacagacattcaaggcagagataagaagtaaacttataagtcaaggttatagaattgttggcattattgggagaccatggagtagcattaatgggtcttccagtgcaaaaagatcattcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85430" stop="87476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85730" g_stop="86119" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86947" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="600" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87027" g_stop="87176" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="750" r_length="150" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E355391" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85730" e_stop="86119"/>
          <exon e_start="86738" e_stop="86947"/>
          <exon e_start="87027" e_stop="87176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATT-GGAGACCAATGGAGTAGCATTAAT-GGTCTTCCAAGTGCAAAAAGATCATTCAAACT</genome_strand>
        <mrna_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGGAGACC-ATGGAGTAGCATTAATGGGTCTTCC-AGTGCAAAAAGATCATTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356620" ref_strand="+" ref_description="SGN-E356620 [cTOS-21-P3]">
      <seq>aaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85430" stop="87065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85730" g_stop="86119" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86765" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="418" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E356620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85730" e_stop="86119"/>
          <exon e_start="86738" e_stop="86765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTG</genome_strand>
        <mrna_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357344" ref_strand="+" ref_description="SGN-E357344 [cTOS-23-M24]">
      <seq>aaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttctatttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttaaagttgttcaatcatcttaaagaactaggagttcaaatctttcttgtttcttcgagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgcacagacattcaaggcagagataagaagtaaacttataagtcaagggtatagaattgttggcattattggagaccaatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85432" stop="87435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85732" g_stop="86119" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86947" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="598" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87027" g_stop="87135" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="707" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E357344" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85732" e_stop="86119"/>
          <exon e_start="86738" e_stop="86947"/>
          <exon e_start="87027" e_stop="87135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGT</genome_strand>
        <mrna_strand>AAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCTATTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGGTATAGAATTGTTGGCATTATTGGAGACCAATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435736" ref_strand="+" ref_description="SGN-E435736 [STM-62-C9]">
      <seq>ggagattggaacattttgtcacaacacaaaaccaatagtggtctcaaaattagcctcaagaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgtccctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattctgaaagaactattaatgaatgtatactttatcttagtactaattgtattttggaaaatgaggggaaagatgcttggatttttgatattgatgatactcttctttcctctgttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttgaagttgttcaatcatcttaaaggactaggagttaaaatctttcttgtttcttcaagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgctcaaagcttcaaggcagaaataagaagtaaacttataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85497" stop="87392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85797" g_stop="86119" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86947" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="533" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87027" g_stop="87093" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="600" r_length="67" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E435736" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85797" e_stop="86119"/>
          <exon e_start="86738" e_stop="86947"/>
          <exon e_start="87027" e_stop="87093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGT</genome_strand>
        <mrna_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCAAAATTAGCCTCAAGAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTCCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTCTGAAAGAACTATTAATGAATGTATACTTTATCTTAGTACTAATTGTATTTTGGAAAATGAGGGGAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCTGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTGAAGTTGTTCAATCATCTTAAAGGACTAGGAGTTAAAATCTTTCTTGTTTCTTCAAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCTCAAAGCTTCAAGGCAGAAATAAGAAGTAAACTTATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466982" ref_strand="+" ref_description="SGN-E466982 [cPRO-26-P1]">
      <seq>ggagattggaacattttgtcacaacacaaaaccaatagtggtctcaaaattagcctcaagaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgtccctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattctgaaagaactattaatgaatgtatactttatcttagtactaattgtattttggaaaatgaggggaaagatgcttggatttttgatattgatgatactcttctttcctctgttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttgaagttgttcaatcatcttaaaggactaggagttaaaatctttcttgttttcttcagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85497" stop="87227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85797" g_stop="86119" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86927" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="513" r_length="190" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E466982" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85797" e_stop="86119"/>
          <exon e_start="86738" e_stop="86927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGA</genome_strand>
        <mrna_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCAAAATTAGCCTCAAGAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTCCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTCTGAAAGAACTATTAATGAATGTATACTTTATCTTAGTACTAATTGTATTTTGGAAAATGAGGGGAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCTGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTGAAGTTGTTCAATCATCTTAAAGGACTAGGAGTTAAAATCTTTCTTGTTTTCTTCAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718743" ref_strand="+" ref_description="SGN-E718743 [FC05CF09]">
      <seq>gggcgattggcggccaatcggccgaattgaattcctttacgcctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90364" stop="94247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90664" g_stop="90925" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="291" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="460" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="586" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="649" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93947" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="850" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E718743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90664" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAA</genome_strand>
        <mrna_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745152" ref_strand="+" ref_description="SGN-E745152 [GI|47105976]">
      <seq>gacgcctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90373" stop="94261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90672" g_stop="90925" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="423" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="549" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="612" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93960" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="826" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="827" polyA_stop="840"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E745152" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90672" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTG</genome_strand>
        <mrna_strand>GACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565426" ref_strand="+" ref_description="SGN-E565426 [3867]">
      <seq>cgcctctccgtcgtgaaaaagctaacacaaaggagaggattttgacgtaaaactatggccaccgaagcaccggtagaggcgacggagattccgcggtcgccgcggagagtcggtggagaagcaaccgataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccggcttggggaagttctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90374" stop="91186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90674" g_stop="90886" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E565426" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90674" e_stop="90886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTC-GCTTGGGGAAGTTCTCTTCG</genome_strand>
        <mrna_strand>CGCCTCTCCGTCGTGAAAAAGCTAACACAAAGGAGAGGATTTTGAC-GTAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCG-CGGTCGCCGC-GGAGAGTCGGTGGAGAAGCAACCG-ATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGGCTTGGGGAAGTTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733310" ref_strand="+" ref_description="SGN-E733310 [LB04CB06]">
      <seq>ctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccgccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctatcagaggaagtggacgttcatggttcgataaccagtctaaaccgaaacgaggcgtcgcttggggaagttctcttcaaagagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccgatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcatatgggcattggtaggaagtggaaggagatcgttgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90377" stop="121977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90677" g_stop="90925" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="420" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="546" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="609" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93972" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="835" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93973" i_stop="97282" i_length="3310">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97283" g_stop="97299" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="852" r_length="17" r_score="0.765"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E733310" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90677" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93972"/>
          <exon e_start="97283" e_stop="97299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTA-GAGAGGAAGTGGACGTTC-TGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGGGTAATTTAATGCTTCAAAATGAGCCTCTTTAGTGCTTGTATAATAGAATTTTGGAGGAACGTAGATAGAAATGCACCAAGTATTTACTTAAATTATCATAAAGTAAAGTTGAACGCGTAGACTCACATGGTTAAACATCCCAAATTGTGTGAGTTTTTCTACGTATGTTTATTTGTTTAATTTTATGATAGTAGAATTGTCAGCTAAGGTCTGTTTATATATTATGTCTCTCAAATACGGGTGTGATGTGCCTTCGTTCACCAAAACCTAGACGTTAAAGAAATTTATTTCTTAGGTCTTTTAATTTAAATTCCTCTTCCACGCGACAATTTAAGTTTAATACTTAACCAATTTCGAGTGAAAAGTTAAAAATTGAAATCATGAAGACAACATTTTCTAGACTACAAAGCACATATATATATGTTTGAATAATACATAAAATTAAAGTTGTATCTGATTGATTTGTCTCAATTACACAAAAGAGGCTATAGCTATTTGATCATAACACATTGGCAATAATGATTAATTTTGTGCCATCCATCAAGCAAGAAATCCAAGTTTTTCACCATTCTTCTTTGCCAATCGAATTAATCCTTGCCTTTGCTTCTGATCTGCTCCTATTGACTTGCAAAACTCTGTGATTACCTGATCAAACAAATCCATCAACATTAGCTTTGGTTTCCGCACCGGGAAGTTCCACCTTAGGGTTTAATAATCTAATGGTTCCTATCAAAGGTGACTTCATTCTCAAAGACTCGAACTGCAGACCTGTAGTTAAGGATAGGGGGAGGGGTATTTACGATTGGTACCTGACTAATCTGGTGGACGAGTGTTGGAAGTTCCTCTTTAGGTGTAAAATGGTCCCTATCAAAGGAAATTTCATTTTCAAGACTCGAACTCCAGACATCTAGTTAAGAATACTTGCAATTGGTACCCAACTAATCTAGCAGATTCGTGTTCGGAAGTTCCACTTTTAGAGATAAAACGCGTAGTCCCTACCCAAGGCGATTTCATTTCAGAGGCTCGTACCTCAGACCTCTAGGTAAGTAGAAGAGTGGGGTAGTGGGATGGGGGTTGGGGGTTACCTACAAGCCCATCACTACTATGGGTGGTTGATATTACCATTGAAATTGTGACCTCTTGGCCTTTATCCTTTTTGGAGACTCAAATACCACATTTAACTTGAGAAACATACTAACAAATTGTCCTCTTTGAAATCTTTTATGAATTGTTTGAGTTTGTTTACTTTTTTTCAAGTTTACTTTTGAAAAAGTAAATGAAATAAATTTAATATTACATGACATATATTAGTCAAATCCAACATTGAAAAGCTTAACCTACTTGTTTAGAACAATAAACTAGAATTTTGAGAACTAAAACCTCTAAGCTTAGACTTAATATTAAATTAAGAATTAATGATTTTAAATGCATAACACTTGAAAATTCTTGTCATAAATCCAAAATCAGTCCAAATAGACTAAACTTATATATCTAATTCTCAATTTGAACATCACAAATTAATTTACAATTCATCATTTTTCACCAATTAACTTTGCTATTTTTATTGACTTTATCCCCAAATTAGAACTTTCATAGATCATATTCAATAATATCAACACTAAAGAAAGACTAGATCTACCCAAAAACAATATAAGCAAAGACAAAAATTGTTAGTAGACAATTTTATGAATGAAAAACATAAAATTTCTTCAAAAACAAAATGATTTCTGCTCATATGCACTCGATAGACATTTAAAATTATACGACATCTATGCTGATGGATAATAACGGATATCGAGCAAATGATAAATTACCTGAGAGTGTAAAGCAATAGCTTTGCCCCTAAGTTGATTGAATCTTTTTTTGCCAACAATATTCCTAGTGATAACAACAATTGGTGCAAATAATCCTTTTCCATCATTAACATTACCCATCATTATCCTTGATCTCACTGCCTTTCCAAATTTAACATTCATTAATGGTTGCACTTTCCTCATAAACTTACCATAATCTTCACCACTAACACATGAAGAAAATGAAGTTGTTGCAATTGAACTTGTAATTGCCATTCAAATAACCTTTTTTCTTAGGACTACTAGTAGTAAATAATATTCTTGAATATAAAAGTGATGATAATGGAGCTAAGGGGGGTTTTTGAGCTTATGTTATAAGATTTTTTTGTGTGGTTTATGAAGGTAGGTTGTTGTTGTAATTTTTGTAGCCTTTTATGTTTGGTTTGTATTTTGAGTGGTAATGAAGAGGCAAATTTAGAGCCACACAATTGTATTTGCTAGCTTTTGATTGTCTTTTTTCTTCTTTTTATTGGATTTTGGTTTTTTTCAAATTTTTTACTTGAAAAATAAAAGATTCTTCTTGATTTTTTAATGGTCCACATATTTTATTTATTTTTTTTAAAAAAGTCTGATAATATAAATCGAATAGTGTTGCGTTCGAATGGTGTGCCTTAATTTAAATATGATATAACTATAACATATAATGGATTTCACGGCAATAATAAATTAGAATATTTGTAACCAACACTCTATATTAATATTGTTAAATGTTTCAGTGATTCTGAATATAGTGATACATATTAACTCAAGTGCTGCTAAATGTATTTTTGGTAATATATATTGTCGCTAAAGGGAAAAAGTCTGTTGTTATTGAACGTCTCTTTGTTGTAATCTATACGTAATATGAAGATAACTTTATCATTTATATCTGTTTCCAATATTTTATTTTATTTATTTATCCCATCAGTTTGGAGATCTGTATCTACTATTCTAGTGGTTCTTTCTCTTCATGTAGGGTCTACCATTGTAATCTTGATCATATCCATATGCCAAGTGGTGCCCTTTTGATCAATTGATTTTTTTTTTCAATTTTGGAGTTTGAACCTTTTCTTTTTCTCACATGTATTTTTGCATCATTAATTTCGTGTATAATCAAATTAAGATACAAATCAAAACAATTTAAATAAAGTTTTGTGAAATTTACGTGACTAGGTTGTTAATTTTTTAAGTTTTCATTAGATGTTCATTATTTATAGTAGAGTCAACTAAATTCACGCATTATCTAATTTATTTTTGAGCGTAGCGTTTTCAACATATTCTTTTTTCATTTGCATGGATTCAAACTCGAAACGTTTGATTAAGATTGAAGCAGTCCCGATCATCACAACATAATTGTGTGATTTTAACCCATGTTTTGAACCTCTATGGTTCTGAATTATACACGAAATCTTAAAGGATCCAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCGCCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTATCAGAGGAAGTGGACGTTCATGGTTCGATAACCAGTCTAAACCGAAACGAGGCGTCGCTTGGGGAAGTTCTCTTCAAAGAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCGATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCGTTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714060" ref_strand="+" ref_description="SGN-E714060 [FB10BF06]">
      <seq>ccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgtttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90381" stop="127792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90681" g_stop="90925" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="414" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="540" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93969" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="826" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93970" i_stop="97282" i_length="3313">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97283" g_stop="97305" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="849" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E714060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90681" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93969"/>
          <exon e_start="97283" e_stop="97305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGGGTAATTTAATGCTTCAAAATGAGCCTCTTTAGTGCTTGTATAATAGAATTTTGGAGGAACGTAGATAGAAATGCACCAAGTATTTACTTAAATTATCATAAAGTAAAGTTGAACGCGTAGACTCACATGGTTAAACATCCCAAATTGTGTGAGTTTTTCTACGTATGTTTATTTGTTTAATTTTATGATAGTAGAATTGTCAGCTAAGGTCTGTTTATATATTATGTCTCTCAAATACGGGTGTGATGTGCCTTCGTTCACCAAAACCTAGACGTTAAAGAAATTTATTTCTTAGGTCTTTTAATTTAAATTCCTCTTCCACGCGACAATTTAAGTTTAATACTTAACCAATTTCGAGTGAAAAGTTAAAAATTGAAATCATGAAGACAACATTTTCTAGACTACAAAGCACATATATATATGTTTGAATAATACATAAAATTAAAGTTGTATCTGATTGATTTGTCTCAATTACACAAAAGAGGCTATAGCTATTTGATCATAACACATTGGCAATAATGATTAATTTTGTGCCATCCATCAAGCAAGAAATCCAAGTTTTTCACCATTCTTCTTTGCCAATCGAATTAATCCTTGCCTTTGCTTCTGATCTGCTCCTATTGACTTGCAAAACTCTGTGATTACCTGATCAAACAAATCCATCAACATTAGCTTTGGTTTCCGCACCGGGAAGTTCCACCTTAGGGTTTAATAATCTAATGGTTCCTATCAAAGGTGACTTCATTCTCAAAGACTCGAACTGCAGACCTGTAGTTAAGGATAGGGGGAGGGGTATTTACGATTGGTACCTGACTAATCTGGTGGACGAGTGTTGGAAGTTCCTCTTTAGGTGTAAAATGGTCCCTATCAAAGGAAATTTCATTTTCAAGACTCGAACTCCAGACATCTAGTTAAGAATACTTGCAATTGGTACCCAACTAATCTAGCAGATTCGTGTTCGGAAGTTCCACTTTTAGAGATAAAACGCGTAGTCCCTACCCAAGGCGATTTCATTTCAGAGGCTCGTACCTCAGACCTCTAGGTAAGTAGAAGAGTGGGGTAGTGGGATGGGGGTTGGGGGTTACCTACAAGCCCATCACTACTATGGGTGGTTGATATTACCATTGAAATTGTGACCTCTTGGCCTTTATCCTTTTTGGAGACTCAAATACCACATTTAACTTGAGAAACATACTAACAAATTGTCCTCTTTGAAATCTTTTATGAATTGTTTGAGTTTGTTTACTTTTTTTCAAGTTTACTTTTGAAAAAGTAAATGAAATAAATTTAATATTACATGACATATATTAGTCAAATCCAACATTGAAAAGCTTAACCTACTTGTTTAGAACAATAAACTAGAATTTTGAGAACTAAAACCTCTAAGCTTAGACTTAATATTAAATTAAGAATTAATGATTTTAAATGCATAACACTTGAAAATTCTTGTCATAAATCCAAAATCAGTCCAAATAGACTAAACTTATATATCTAATTCTCAATTTGAACATCACAAATTAATTTACAATTCATCATTTTTCACCAATTAACTTTGCTATTTTTATTGACTTTATCCCCAAATTAGAACTTTCATAGATCATATTCAATAATATCAACACTAAAGAAAGACTAGATCTACCCAAAAACAATATAAGCAAAGACAAAAATTGTTAGTAGACAATTTTATGAATGAAAAACATAAAATTTCTTCAAAAACAAAATGATTTCTGCTCATATGCACTCGATAGACATTTAAAATTATACGACATCTATGCTGATGGATAATAACGGATATCGAGCAAATGATAAATTACCTGAGAGTGTAAAGCAATAGCTTTGCCCCTAAGTTGATTGAATCTTTTTTTGCCAACAATATTCCTAGTGATAACAACAATTGGTGCAAATAATCCTTTTCCATCATTAACATTACCCATCATTATCCTTGATCTCACTGCCTTTCCAAATTTAACATTCATTAATGGTTGCACTTTCCTCATAAACTTACCATAATCTTCACCACTAACACATGAAGAAAATGAAGTTGTTGCAATTGAACTTGTAATTGCCATTCAAATAACCTTTTTTCTTAGGACTACTAGTAGTAAATAATATTCTTGAATATAAAAGTGATGATAATGGAGCTAAGGGGGGTTTTTGAGCTTATGTTATAAGATTTTTTTGTGTGGTTTATGAAGGTAGGTTGTTGTTGTAATTTTTGTAGCCTTTTATGTTTGGTTTGTATTTTGAGTGGTAATGAAGAGGCAAATTTAGAGCCACACAATTGTATTTGCTAGCTTTTGATTGTCTTTTTTCTTCTTTTTATTGGATTTTGGTTTTTTTCAAATTTTTTACTTGAAAAATAAAAGATTCTTCTTGATTTTTTAATGGTCCACATATTTTATTTATTTTTTTTAAAAAAGTCTGATAATATAAATCGAATAGTGTTGCGTTCGAATGGTGTGCCTTAATTTAAATATGATATAACTATAACATATAATGGATTTCACGGCAATAATAAATTAGAATATTTGTAACCAACACTCTATATTAATATTGTTAAATGTTTCAGTGATTCTGAATATAGTGATACATATTAACTCAAGTGCTGCTAAATGTATTTTTGGTAATATATATTGTCGCTAAAGGGAAAAAGTCTGTTGTTATTGAACGTCTCTTTGTTGTAATCTATACGTAATATGAAGATAACTTTATCATTTATATCTGTTTCCAATATTTTATTTTATTTATTTATCCCATCAGTTTGGAGATCTGTATCTACTATTCTAGTGGTTCTTTCTCTTCATGTAGGGTCTACCATTGTAATCTTGATCATATCCATATGCCAAGTGGTGCCCTTTTGATCAATTGATTTTTTTTTTCAATTTTGGAGTTTGAACCTTTTCTTTTTCTCACATGTATTTTTGCATCATTAATTTCGTGTATAATCAAATTAAGATACAAATCAAAACAATTTAAATAAAGTTTTGTGAAATTTACGTGACTAGGTTGTTAATTTTTTAAGTTTTCATTAGATGTTCATTATTTATAGTAGAGTCAACTAAATTCACGCATTATCTAATTTATTTTTGAGCGTAGCGTTTTCAACATATTCTTTTTTCATTTGCATGGATTCAAACTCGAAACGTTTGATTAAGATTGAAGCAGTCCCGATCATCACAACATAATTGTGTGATTTTAACCCATGTTTTGAACCTCTATGGTTCTGAATTATACACGAAATCTTAAAGGATCCAAAAAAAAAAAACATGGA</genome_strand>
        <mrna_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372798" ref_strand="+" ref_description="SGN-E372798 [TUS-32-P18]">
      <seq>ccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattacaccacttcttaagctctttaccatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90381" stop="94150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90681" g_stop="90925" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="414" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="540" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93850" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="705" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E372798" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90681" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAA</genome_strand>
        <mrna_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATT-ACACCACTTCTTAAGCTCTTTACC-ATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543486" ref_strand="+" ref_description="SGN-E543486 [TUS-65-F6]">
      <seq>gtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaagagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtgggattaacaccactccttaagctctttaccatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaatttattcgaacttgatgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90383" stop="94229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90683" g_stop="90925" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="412" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="538" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="601" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93929" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="782" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E543486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90683" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGT</genome_strand>
        <mrna_strand>GTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAGAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGGATTAACACCACTCCTTAAGCTCTTTACC-ATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTG-AATTTATTCGAACTTGATGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327299" ref_strand="+" ref_description="SGN-E327299 [cTOC-19-L19]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaataacaccactcccttagctctttaccatactgaaattgtacgattagcacttttttgcgcttgtctgctgcnaattttgatctttattgaatttattcgaactttgatgtatgttggatgtattgcattaaagattttgttctgatgtttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90384" stop="94270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90684" g_stop="90925" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="537" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="600" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93969" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="821" r_length="221" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E327299" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90684" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAAC-TTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAA-TAACACCACTCCCTTAGCTCTTTACC-ATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCNAATTTTGATCTTTATTGAATTTATTCGAACTTTGATGTATG-TTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328221" ref_strand="+" ref_description="SGN-E328221 [cTOC-21-O4]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaatttaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaagagtcacgataaactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90384" stop="92268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90684" g_stop="90925" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="91968" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E328221" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90684" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="91968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTC</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAATTTAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAAGAGTCACGATAAACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305002" ref_strand="+" ref_description="SGN-E305002 [cLEX-10-C1]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90384" stop="92247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90684" g_stop="90925" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="91947" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="479" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E305002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90684" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="91947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCG</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598718" ref_strand="-" ref_description="SGN-E598718 [51690]">
      <seq>taggcgaaattgggtaccgggccccccgaaaaagctaacacaaaggagaggattttgacgtaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggaggagtcggtggagaagcaaccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcgttaaagattttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90388" stop="94258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90688" g_stop="90925" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="265" r_length="238" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="434" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="560" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="623" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93958" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="832" r_length="209" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E598718" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598718" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90688" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTC</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGAGGAGTCGGTGGAGAAGCAACCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCGTTAAAGATTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454281" ref_strand="+" ref_description="SGN-E454281 [cSTS-22-D10]">
      <seq>gaaaaagctaacacaaaggagaggattttgacggaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggcggcggcggagtcggtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90388" stop="93944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90688" g_stop="90925" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="413" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="602" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93752" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="608" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E454281" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90688" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATT---CC-GT--CGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGAT</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGGAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGCGGCGGCGGAGTCGGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565280" ref_strand="+" ref_description="SGN-E565280 [3720]">
      <seq>gaaaaagctaacacaaaggagaggattttgacgtaaaaactatggccaccgaagcaccggctagaggcgacggagcattccgccggtcgcggcggaggagtcggtggagaagcaaccgcataagctaagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagtgtctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtagagtcaggataaactttccttggtggactaagactgccaccaatgaagcagctcaatgggcattggtaagaagtggaaggagatcattgataaccgaaaagatatctatagtttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90388" stop="93940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90688" g_stop="90925" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="409" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="534" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="597" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E565280" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90688" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGG-TAGAGGCGACGGAG-ATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGT-TCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTT-GTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGAT-GCCGAAAAGATATCCTATAGTTTCCAT</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGCTAGAGGCGACGGAGCATTCCGCCGGTCGCGGCGGAGGAGTCGGTGGAGAAGCAACCGCATAAGCTA-AGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTGTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTA-GAGTCAGGATAAACTTTCCTTGGTGGACTAAGACTGCCACCAATGAAGCAGCTCA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAAGAAGTGGAAGGAGATCATTGATAACCGAAAAGATAT-CTATAGTTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308504" ref_strand="+" ref_description="SGN-E308504 [cLEY-21-D7]">
      <seq>aaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90389" stop="92253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90689" g_stop="90925" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="406" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="91953" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="480" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E308504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90689" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="91953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAG</genome_strand>
        <mrna_strand>AAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325551" ref_strand="+" ref_description="SGN-E325551 [cTOC-15-E10]">
      <seq>agctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgcccgaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttagctctttacaatactgaattgtacgattagcactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90393" stop="94172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90693" g_stop="90925" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="402" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="528" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="591" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93872" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="714" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E325551" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90693" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTT</genome_strand>
        <mrna_strand>AGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCCGAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTT-AGCTCTTTA-CAATACTG-AATTGTACGATTAGCACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573175" ref_strand="+" ref_description="SGN-E573175 [32445]">
      <seq>ctacacaaaggagaggatttgacgtaaaaactatggccatcgaagcacgggtagaggcgacggagattcccgcgggtcgcggggcggaggagtcggtggagaagcaaacgcataagctagagaggaagtggacgtnctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaatttgtacgattagcacttttttgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90398" stop="94176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90695" g_stop="90925" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="401" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="527" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="590" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93876" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="718" r_length="128" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E573175" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90695" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATT-CCGTCGGTAGC--GGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAA-TTGTACGATTAGCACTTTTTTGCGC</genome_strand>
        <mrna_strand>CTACACAA-AGGAGAGGA-TTTGACGTAAAAACTATGGCCATCGAAGCACGGGTAGAGGCGACGGAGATTCCCGCGGGTCGCGGGGCGGAGGAGTCGGTGGAGAAGCAAACGCATAAGCTAGAGAGGAAGTGGACGTNCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTTGTACGATTAGCACTTTTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577954" ref_strand="+" ref_description="SGN-E577954 [LE08BH12]">
      <seq>caaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaanagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattggaatttattcgaacttgatgtatgtttggatgtattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90400" stop="94243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90700" g_stop="90925" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="395" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="521" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="584" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93943" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="781" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E577954" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90700" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCA</genome_strand>
        <mrna_strand>CAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAANAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGGAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456996" ref_strand="+" ref_description="SGN-E456996 [cPRO-2-E19]">
      <seq>attttgacgtaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggcggagtcggtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcagatattcaagcccagcaagttgactgttaatgcggattttcatttgttcaaaactgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagccgaaaggctaatctcgagactatgtggcttgaaacattgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggaccaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90412" stop="94187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90712" g_stop="90925" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="383" r_length="169" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="509" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="572" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93887" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="710" r_length="138" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E456996" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90712" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGC</genome_strand>
        <mrna_strand>ATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGCGGAGTCGGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGATTTTCATTTGTTCAAAACTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCCGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................TTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACCAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543485" ref_strand="+" ref_description="SGN-E543485 [TUS-65-F6](-)">
      <seq>cataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttatgtggtatcactttatatctcaagtagactctatgggagaaagcttagtcgattcattgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90504" stop="94338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90804" g_stop="90925" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="291" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="417" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="480" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="94034" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="768" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="783"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E543485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90804" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="94034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</genome_strand>
        <mrna_strand>CATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372797" ref_strand="+" ref_description="SGN-E372797 [TUS-32-P18](-)">
      <seq>ggacgttttggttcgataaccagtttaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtttgctgcaaattttgattttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttttgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90523" stop="94263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90823" g_stop="90925" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="272" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="398" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="461" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="93962" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="677" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="693"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E372797" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90823" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGAT</genome_strand>
        <mrna_strand>GGACGTTTTGGTTCGATAACCAGTTTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTTTGCTGCAAATTTTGATTTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356250" ref_strand="+" ref_description="SGN-E356250 [cTOS-20-H4]">
      <seq>agcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagattatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttccttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttatgtggtatcactttatatctcaagtagactctatgggagaaagcttagtcgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="91409" stop="94330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91709" g_stop="91747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="227" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93747" g_stop="94034" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="515" r_length="288" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E356250" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91709" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="94034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</genome_strand>
        <mrna_strand>AGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGAT-TATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCCTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220227" ref_strand="+" ref_description="SGN-E220227 [cLEL-12-A11](-)">
      <seq>agtcagaagatatatgtggggtggttgctagtgtgcgtagaagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttaaaaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="91611" stop="94270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91911" g_stop="92005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="158" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93747" g_stop="93969" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="381" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="407"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E220227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91911" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</genome_strand>
        <mrna_strand>AGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGAAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283839" ref_strand="-" ref_description="SGN-E283839 [cLES-1-N8]">
      <seq>tatgtggggtggttgctagtgtgcgtagaagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttacaaaaaaaaaaaaaaaattaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="91623" stop="94274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91923" g_stop="92005" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="146" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93747" g_stop="93973" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="373" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="391"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E283839" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91923" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="93973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTT</genome_strand>
        <mrna_strand>TATGTGGGGTGGTTGCTAGTGTGCGTAGAAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433177" ref_strand="-" ref_description="SGN-E433177 [STM-58-I9]">
      <seq>caatgatggggaatgttaatgatggaaaaggattatttgcaccaattgttgttgtcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggctaagaagaatggtgaaaaacttgggtttcttgcttgatggatggcatataattaatcatcattgccaattgaaaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaacttaattatatgtattattcaaacatatatatatatgctttgtagtctagagaggtatgtcttcatcatttcccccttttgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96272" stop="94128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95973" g_stop="95849" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94394" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="417" r_length="292" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E433177" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95973" e_stop="95849"/>
          <exon e_start="94679" e_stop="94394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCC-------AATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCAATTTTTAACTTTTC</genome_strand>
        <mrna_strand>CAATGATGGGGAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTGTCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCTAAGAAGAATGGTGAAAAACTTGGGTTTCTTGCTTGATGGATGGCATATAATTAATCATCATTGCCAATTGAAAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAAC-TTAATTATATGTATTATTCAAACATATATATATATGCTTTGTAGTCTAGAGAGGTATGTCTTCATCATTTCCCCCTTTTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391267" ref_strand="+" ref_description="SGN-E391267 [TUS-47-K5](-)">
      <seq>gtcctaagaaaaaaggttatttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaatgttgtcttcatgatttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96427" stop="94107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96127" g_stop="95849" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94408" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="551" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E391267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96127" e_stop="95849"/>
          <exon e_start="94679" e_stop="94408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCA</genome_strand>
        <mrna_strand>GTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403065" ref_strand="+" ref_description="SGN-E403065 [PPC-9-D23]">
      <seq>caatgatggggaatgttaatgatggaaaaggattatttgcaccaattgttgttgtcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggctaagaagaatggtgaaaaacttgggtttcttgcttgatggatggcatataattaatcatcattgccaattgaaaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaacttaattatatgtattattcaaacatatatatatatgctttgtagtctagaaaatgttgtcttcatcatttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96272" stop="94107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95973" g_stop="95849" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94408" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="403" r_length="278" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="414"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E403065" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95973" e_stop="95849"/>
          <exon e_start="94679" e_stop="94408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCC-------AATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCA</genome_strand>
        <mrna_strand>CAATGATGGGGAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTGTCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCTAAGAAGAATGGTGAAAAACTTGGGTTTCTTGCTTGATGGATGGCATATAATTAATCATCATTGCCAATTGAAAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAAC-TTAATTATATGTATTATTCAAACATATATATATATGCTTTGTAGTCTAGAAAATGTTGTCTTCATCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433176" ref_strand="+" ref_description="SGN-E433176 [STM-58-I9]">
      <seq>caatgatggggaatgttaatgatggaaaaggattatttgcaccaattgttgttgtcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggctaagaagaatggtgaaaaacttgggtttcttgcttgatggatggcatataattaatcatcattgccaattgaaaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaacttaattatatgtattattcaaacatatatatatatgctttgtagtctagaaaatgttgtcttcatcatttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96272" stop="94107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95973" g_stop="95849" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94408" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="403" r_length="278" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="414"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E433176" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95973" e_stop="95849"/>
          <exon e_start="94679" e_stop="94408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCC-------AATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCA</genome_strand>
        <mrna_strand>CAATGATGGGGAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTGTCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCTAAGAAGAATGGTGAAAAACTTGGGTTTCTTGCTTGATGGATGGCATATAATTAATCATCATTGCCAATTGAAAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAAC-TTAATTATATGTATTATTCAAACATATATATATATGCTTTGTAGTCTAGAAAATGTTGTCTTCATCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616694" ref_strand="+" ref_description="SGN-E616694 [90163]">
      <seq>tatcacttcaacattcaaaaatattattactactactagttgtaaattattattttttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttggtggtgaaagatatggtatgttatgaagaaagtgcaaccattaatgaatgttaaaattggaaaggcagtgagatcaacgacaatgatggggaatgttaatgatggaaaaggattatttgcaccaattgttgttgtcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttgggtttcttgcttgatggatggcacataattaatcatcattgccaattgaaacatgtgttatgatcaaatagctatagcctcttttatgtaattgaaacaaatcaatcagatacaacttaattatatgtattattcaaacatatatatatgctttgtagtctagaaaaaaacaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96411" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96166" g_stop="95849" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="571" r_length="257" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E616694" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96166" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCC-------A-ATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>TATCACTTCAACATTCAAAAATATTA-TTACTACTACTAGTTGT-A-AATTATTATTTTTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTGGTGGTGAAAGATATGGTATG-TTATGAAGAAAGTGCAACCATTAATGAATGTTAAAATTGGAAAGGCAGTGAGATCAACGACAATGATGGGGAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTGTCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGGTTTCTTGCTTGATGGATGGCACATAATTAATCATCATTGCCAATTGAAACATGTGTTATGATCAAATAGCTATAGCCTCTTTTATGTAATTGAAACAAATCAATCAGATACAAC-TTAATTATATGTATTATTCAAACATATATATA--TGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224410" ref_strand="+" ref_description="SGN-E224410 [cLEL-27-L8](-)">
      <seq>tgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96350" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96050" g_stop="95849" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="454" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="469"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E224410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96050" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>TGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224910" ref_strand="+" ref_description="SGN-E224910 [cLEL-27-L8](-)">
      <seq>atgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96310" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96010" g_stop="95849" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="414" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="429"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E224910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96010" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>ATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295733" ref_strand="+" ref_description="SGN-E295733 [cLET-25-E13]">
      <seq>aaaaagattattttcaccaattgttgttatcactaggaaagttgttggcaaaaaaagattcaatccacttacgggcaaagctattgctttacactctcacgtaatcacagagttttgcaagtcaataggagcatatcagaagccaaagcctggattaattcgattggcaaagaacaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcaaatacaactttaattttatgtattattcaaacatatatatatgtgctatgtagtctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96248" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95948" g_stop="95849" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.694" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="352" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E295733" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95948" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>AAAAAGATTATTTTCACCAATTGTTGTTATCACTAGGAAAGTTGTTGGCAAAAAAAGATTCAATCCACTTACGGGCAAAGCTATTGCTTTACACTCTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCATATCAGAAGCCAAAGCCTGGATTAATTCGATTGGCAAAGAACAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAAATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTATGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289462" ref_strand="+" ref_description="SGN-E289462 [cLET-3-J2]">
      <seq>aaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgggttatgatcaaatagctatagcctcttttgtgtaattgggacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96248" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95948" g_stop="95849" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="352" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="362"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E289462" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95948" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>AAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGGGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGGGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224887" ref_strand="+" ref_description="SGN-E224887 [cLEL-27-G5](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtactctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E224887" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTACTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215293" ref_strand="+" ref_description="SGN-E215293 [cLEL-20-E21](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E215293" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215389" ref_strand="+" ref_description="SGN-E215389 [cLEL-20-E21](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E215389" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217907" ref_strand="+" ref_description="SGN-E217907 [cLEL-23-B21](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E217907" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218127" ref_strand="+" ref_description="SGN-E218127 [cLEL-23-B21](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E218127" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224387" ref_strand="+" ref_description="SGN-E224387 [cLEL-27-G5](-)">
      <seq>ggcacgaggattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96194" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95902" g_stop="95849" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="304" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E224387" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95902" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>GGCA-CGA-GGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278601" ref_strand="+" ref_description="SGN-E278601 [cLER-10-D2]">
      <seq>ttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="94965" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94665" g_stop="94428" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="239" polyA_stop="255"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E278601" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94665" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>TTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371738" ref_strand="+" ref_description="SGN-E371738 [TUS-30-G17](-)">
      <seq>ttacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96396" stop="94148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96096" g_stop="95849" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94455" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="473" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="487"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E371738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96096" e_stop="95849"/>
          <exon e_start="94679" e_stop="94455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACAT</genome_strand>
        <mrna_strand>TTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371739" ref_strand="+" ref_description="SGN-E371739 [TUS-30-G17]">
      <seq>tacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96395" stop="94148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96095" g_stop="95849" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94455" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="472" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="487"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E371739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96095" e_stop="95849"/>
          <exon e_start="94679" e_stop="94455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACAT</genome_strand>
        <mrna_strand>TACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347430" ref_strand="+" ref_description="SGN-E347430 [cTOF-33-K9]">
      <seq>cattatcatcacttttatattcaagaatattatttactactagtagtcctaagaaaaaaggttatttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacctnnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96472" stop="94155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96172" g_stop="95849" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94457" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="547" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="570"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E347430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96172" e_stop="95849"/>
          <exon e_start="94679" e_stop="94457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAAC</genome_strand>
        <mrna_strand>CATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278618" ref_strand="+" ref_description="SGN-E278618 [cLER-10-H22]">
      <seq>tcctaagaaaaaaggttatttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagcgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggctaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96426" stop="94158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96126" g_stop="95849" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94458" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="500" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E278618" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96126" e_stop="95849"/>
          <exon e_start="94679" e_stop="94458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAA</genome_strand>
        <mrna_strand>TCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGCGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCTAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283007" ref_strand="+" ref_description="SGN-E283007 [cLER-17-O20]">
      <seq>tacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96395" stop="94158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96095" g_stop="95849" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94458" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="469" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E283007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96095" e_stop="95849"/>
          <exon e_start="94679" e_stop="94458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAA</genome_strand>
        <mrna_strand>TACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279900" ref_strand="+" ref_description="SGN-E279900 [cLER-8-O5]">
      <seq>ggcaattacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96401" stop="94172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96101" g_stop="95849" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94472" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="461" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E279900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96101" e_stop="95849"/>
          <exon e_start="94679" e_stop="94472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTT</genome_strand>
        <mrna_strand>GGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613027" ref_strand="+" ref_description="SGN-E613027 [62796]">
      <seq>cttagctccattatcacttcaacattcaaaaatattattactactactagttgtaattattgttttttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttggtggtgaagattatggtatgtttatctgaagaaagtgcaaccattaatgaatgttaaaattggaaaggcagtgagatcaaggacaatgatggggaatgttaatgatggaaaaggattatttgcaccaattgttgttgtcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggctaagaagaatggtgaaaaacttgggtttcttgcttgatggatggcatataattaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96480" stop="94254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96180" g_stop="95849" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94554" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="453" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E613027" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96180" e_stop="95849"/>
          <exon e_start="94679" e_stop="94554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTCCATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTA--TGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCA</genome_strand>
        <mrna_strand>CTTAGCTCCA-T-T-ATCACTTCAACATTCAAAAATATTA-TTACTACTACTAGT--T-GTAATTATTGTTTTTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTGGTGGTGAAGATTATGGTATGTTTATCTGAAGAAAGTGCAACCATTAATGAATGTTAAAATTGGAAAGGCAGTGAGATCAAGGACAATGATGGGGAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTGTCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCTAAGAAGAATGGTGAAAAACTTGGGTTTCTTGCTTGATGGATGGCATATAATTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340702" ref_strand="+" ref_description="SGN-E340702 [cTOF-1-H14]">
      <seq>atgttggtggccaaagaaagaactcttcgaatcaatcaagctccttacttgtctttaaagtatctttgtactaaattagaagaaaaaaataggtatttttatttttggaccaaggactgctgtcaattacaaaagaagctaggccatctctgttctagaggtagagagcctatgaaatataaaacttaatttacattatctgcaaatgaaaattataccaaacgaacaaagacagaaagtcttgatgctataaggatgattagattttcctcttgaagagttcatacaatgcaaacagggaacaacaatgagtgaaccatgtttttttgcattcctatagcggttttttctagaccagtgcttcagaaagctgctgttggggactttgggttcttattatcatcactgttgcctgaattattttaaagcatatacgttgcattgtacaatctacaatgcaaagacaagtgatttgagtcttaagtatccagatcacagaagtagtatctcttacatgaatataatcccataaaccccttagtatttgttatgcaaatataatcccctgaactccttagtaatttttacgcaaaaataatccccttctccttatattttcttgtgttagacaaacttcangcatatggcataaccattggttccatcagaaatcagaatctgatctcattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="109877" stop="111169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110177" g_stop="110869" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E340702" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110177" e_stop="110869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCAGGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</genome_strand>
        <mrna_strand>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCANGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214713" ref_strand="+" ref_description="SGN-E214713 [cLEC-79-P7]">
      <seq>atcttgtatcttctttctattttttctctttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttgaggttgtttaggtaaaggaatttagaaggaagatttgttttttgttgttgttgttgtgtgtttggaggaatggatactaaaagtaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122113" stop="123201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122413" g_stop="122901" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E214713" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122413" e_stop="122901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAG</genome_strand>
        <mrna_strand>ATCTTGTATCTTCTTTCTA-TTTTTTCTCTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392227" ref_strand="+" ref_description="SGN-E392227 [TUS-36-E16]">
      <seq>cttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcaaagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaaaattagctttttagctttttttgatacatacccatatagttttatgaggatttgaaaatcaaaaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttgaggttgtttaggtaaaggaatttagaaggaagatttgttttttgttgttgttgttgtgtgtttggaggaatggatactaaaagtaataaagatttaaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122116" stop="123283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122415" g_stop="122983" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E392227" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122415" e_stop="122983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGA</genome_strand>
        <mrna_strand>CTTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAAAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAAATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAAATCAAAAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367954" ref_strand="+" ref_description="SGN-E367954 [TUS-22-J11]">
      <seq>ttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttgaggttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122116" stop="123119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122416" g_stop="122819" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E367954" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122416" e_stop="122819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTT</genome_strand>
        <mrna_strand>TTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237702" ref_strand="+" ref_description="SGN-E237702 [cLED-19-H19]">
      <seq>ttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122116" stop="123110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122416" g_stop="122810" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E237702" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122416" e_stop="122810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTG</genome_strand>
        <mrna_strand>TTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233543" ref_strand="+" ref_description="SGN-E233543 [cLED-9-K24]">
      <seq>ttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122116" stop="123109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122416" g_stop="122809" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E233543" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122416" e_stop="122809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTT</genome_strand>
        <mrna_strand>TTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242994" ref_strand="+" ref_description="SGN-E242994 [cLED-31-N24]">
      <seq>ttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122116" stop="123035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122416" g_stop="122735" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E242994" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122416" e_stop="122735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCT</genome_strand>
        <mrna_strand>TTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233405" ref_strand="+" ref_description="SGN-E233405 [cLED-9-F1]">
      <seq>ttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttgaggttgtttaggtaaaggaatttataaggaagatttgttttttgtttgttgtcgttgtgagtttggaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122123" stop="123180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122423" g_stop="122880" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E233405" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122423" e_stop="122880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTG-TTGTTGTTGTTGTGTGTTTGGAGGAA</genome_strand>
        <mrna_strand>TTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTATAAGGAAGATTTGTTTTTTGTTTGTTGTCGTTGTGAGTTTGGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455451" ref_strand="+" ref_description="SGN-E455451 [cSTS-26-G10]">
      <seq>cacagacacacactctatcttgtatcctctttctattttttctctttttttcccaatctaatcatacaaattcaagggtttttgattcattgttgtaccaattctcctacttttttccattttccttcacattcagagaaggaaaattaaaaaaaaaaaacaattcttgaagctaaaccaatacaaagattagctttttagcttttttaatacatacccatatatttttatgaggatttaaagatcaagaatctgcaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaggatagtgcattaaatcttgaaattttgttgtaaagatttgagctttttgaggatttttgttgaaatggggttgttggttttgcattggaatcatctgattttgaggttgtttaggtaaaggaatttagaaggaagatttgtttttgttgttgttgttgtgtgtttggaggaatggatacaaagaataataaagattttaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaaagcattgttgccttctaggaaaggtggattgtcaaaaaaatagctaagccaaagaagaaagttcagtggaatgatacaaatgggaataaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122117" stop="123391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122436" g_stop="123091" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="689" r_length="654" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E455451" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122436" e_stop="123091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACT-TTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATT-AACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTAC</genome_strand>
        <mrna_strand>TTTTTTCTCTTTTTTTCCCAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTGTACCAATTCTCCTACTTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAAAAAAAAAAAACAATTCTTG-AAGCTAAACCAATACAAAGATTAGCTTTTTAGC-TTTTTTAATACATACCCATATATTTTTATGAGGATTTAAAGATCAAGAATCTGCAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAGGATAGTGCATTAAATCTTGAAATTTTGTTGTAAAGATTTGAGCTTTTTGAGGATTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATCTGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTG-TTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACAAAGAATAATAAAGATTTTAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAA-ATAGCTAAGCCAAAGAAGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415394" ref_strand="+" ref_description="SGN-E415394 [STM-21-C2]">
      <seq>cagacaccacacctctatcttgtatcctctttctattttttctctttttttcccaatctaatctacaaattcaagggtttttgattcattgttgtaccaattctcctacttttttccatttttccttcacattcagagaaggaaaattaaaaaaaaaaaacaattcttgaagctaaaccaatacaaagattagctttttagcttttttaatacatacccatatatttttatgaggatttaaagatcaagaatctgcaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaggatagtgcattaaatcttgaaattttgttgtaaagatttgagctttttgaggatttttgttgaaatggggttgttggttttgcattggaatcatctgattttgaggttgtttaggtaaaggaatttagaaggaagatttgtttttgttgttgttgttgtgtgtttggaggaatggatacaaagaataataaagattttaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122117" stop="123274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122436" g_stop="122974" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="573" r_length="538" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E415394" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122436" e_stop="122974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTT-TCCA-TTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAG-CCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAA</genome_strand>
        <mrna_strand>TTTTTTCTCTTTTTTTCCCAATCTAATC-TACAAATTCAAGGGTTTTTGATTCATTGTTGTACCAATTCTCCTACTTTTTTCCATTTTTCCTTCACATTCAGAGAAGGAAAATTAAAAAAAAAAAACAATTCTTG-AAGCTAAACCAATACAAAGATTAGCTTTTTAGC-TTTTTTAATACATACCCATATATTTTTATGAGGATTTAAAGATCAAGAATCTGCAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAGGATAGTGCATTAAATCTTGAAATTTTGTTGTAAAGATTTGAGCTTTTTGAGGATTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATCTGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTG-TTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACAAAGAATAATAAAGATTTTAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554409" ref_strand="-" ref_description="SGN-E554409 [cTSC-4-D2]">
      <seq>ttgaggttgtttaggtaaaggaatttagaaggaagatttgttttttgtttgttgttgttgtgtgtttggaggaatggatactaaaagtaataaagatttaaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaaagcattgttgccttctaggaaaggtggattgtcaaaaaagatagctaagccaaagaggaaagttcagtggaatgatacaaatgggaataaacttactgaggttttggaatttgagccaagtgatgcaagtgactcggatgaagatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcattaccaaaccaattgtgagtcaagaatgttgaatctccttcgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctctaatttggttcaagttatctgagccaaatgaaacgaccctttctcgttgaacacaatcagatagagagaataacttcctctattgtataatgtatatgagtgcttcgagttatagtagataacatacagaacccttcaggttttcttgttttcttttgcttaattataatgtatatgagtgctgagccttacagatgatgactttgttctagcaagaatgattttataacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122508" stop="126250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122808" g_stop="123115" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125950" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="713" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E554409" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554409" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122808" e_stop="123115"/>
          <exon e_start="125547" e_stop="125950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTG-TTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCT</genome_strand>
        <mrna_strand>TTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367953" ref_strand="+" ref_description="SGN-E367953 [TUS-22-J11](-)">
      <seq>tttttgttgttgttgttgtgtgtttggaggaatggatactaaaagtaataaagatttaaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaaagcattgttgccttctaggaaaggtggattgtcaaaaaagatagctaagccaaagaggaaagttcagtggaatgatacaaatgggaataaacttactgaggttttggaatttgagccaagtgatgcaagtgactcggatgaagatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcattaccaaaccaattgtgagtcaagaatgttgaatctccttcgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctctaatttggttcaagttatctgagccaaatgaaacgaccctttctcgttgaacacaatcagatagagagaataacttcctctattgtataatgtatatgagtgcttcgagttatagtagataacatacagaacccttcaggttttcttgttttcttttgcttaattataatgtatatgagtgctgagccttacagatgatgactttgttctagcaagaatgattttataacatctttaattctttgtccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122549" stop="126265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122849" g_stop="123115" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125964" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="685" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="702"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E367953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122849" e_stop="123115"/>
          <exon e_start="125547" e_stop="125964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCC</genome_strand>
        <mrna_strand>TTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392226" ref_strand="+" ref_description="SGN-E392226 [TUS-36-E16](-)">
      <seq>aatggatactaaaagtaataaagatttaaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaaagcattgttgccttctaggaaaggtggattgtcaaaaaagatagctaagccaaagaggaaagttcagtggaatgatacaaatgggaataaacttactgaggttttggaatttgagccaagtgatgcaagtgactcggatgaagatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcattaccaaaccaattgtgagtcaagaatgttgaatctccttcgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctttaatttggttcaagttatttgagccaaatgaaacgaccctttctcgttgaacacaatcagatagagagaataacttcctctattgtataatgtatatgagtgcttcgagttatagtagataacatacagaacccttcaggttttcttgttttcttttgcttaattataatgtatatgagtgctgagccttacagatgatgactttgttgtagcaagaatgattttataacatctttaattctttgtacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122579" stop="126265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122879" g_stop="123115" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125960" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="651" r_length="414" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="673"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E392226" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122879" e_stop="123115"/>
          <exon e_start="125547" e_stop="125960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTT</genome_strand>
        <mrna_strand>AATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTTTAATTTGGTTCAAGTTATTTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTGTAGCAAGAATGATTTTATAACATCTTTAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598230" ref_strand="+" ref_description="SGN-E598230 [73899]">
      <seq>tttaaggggagaaaatccagtatgtggatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaagcattgttgccttcttaganagggtggattggtcaaaaagatagctaagccaaagagaaaagtcagtggaatgatacaaatgggaataaacttactgaggttttggaatttgagccaagtgatgcaagtgactcggatgacgatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcaataccaaaccaattgtgaatcaagaatgttgaatctcctttgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctctaatttggttcaagttttctgagccaaatgaaacgtccctttctcgttgtacacaatcagatagagagaatgacttcctctattgtataatatatatgagtgcttcgagttatagtagataacatacagaaaaccttcggattttcttgttttcttttgcttaattataatgtatatgagtgctgagccttacagatgatgacttttttctagcaagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122608" stop="126237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122905" g_stop="123115" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125937" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="602" r_length="392" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E598230" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122905" e_stop="123115"/>
          <exon e_start="125547" e_stop="125937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTC-TAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAG-AACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGA</genome_strand>
        <mrna_strand>TTTAAGGGGAGAAAATCCAGTATGTGGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCT-AAGCATTGTTGCCTTCTTAGANAGGGTGGATTGGTCAAAAAGATAGCTAAGCCAAAGAGAAAAG-TCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGACGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCAATACCAAACCAATTGTGAATCAAGAATGTTGAATCTCCTTTGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTTTCTGAGCCAAATGAAACGTCCCTTTCTCGTTGTACACAATCAGATAGAGAGAATGACTTCCTCTATTGTATAATATATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAAAACCTTCGGATTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTTTTCTAGCAAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604963" ref_strand="+" ref_description="SGN-E604963 [56982]">
      <seq>aaactagtggatcccccgcggctgcatggttttggaatttgagccaagtgatgcaagtgactcggatgacgatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcaataccaaaccaattgtgaatcaagaatgttgaatctcctttgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctctatcgtttggttcaagttttctgagccaaatgaaacgtccctttctcgttgtacacaatcagatagagagaatgacttcctctattgtataatatatatgagtgcttcgagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122791" stop="126142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123096" g_stop="123115" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="48" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125843" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="347" r_length="299" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E604963" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123096" e_stop="123115"/>
          <exon e_start="125547" e_stop="125843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTA--ATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATAC</genome_strand>
        <mrna_strand>GTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGACGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCAATACCAAACCAATTGTGAATCAAGAATGTTGAATCTCCTTTGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTATCGTTTGGTTCAAGTTTTCTGAGCCAAATGAAACGTCCCTTTCTCGTTGTACACAATCAGATAGAGAGAATGACTTCCTCTATTGTATAATATATATGAGTGCTTCGAGTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554147" ref_strand="+" ref_description="SGN-E554147 [cTSC-3-G1]">
      <seq>gttctagcaagaatgattttataacatctttaattctttgtccatttgctttgttctgtaacagtaaaagaattacaacatgcatatgatatgctatcaaccaaatacaggttccccagatgaaaatcttattgtcttttcttctctcgcggagaagagaatacaacacactgcacacataaatcatgcaaaaaaaacaatcaattctttacacaaacatcaatccaaatgtatttaggtactgcaccttctctgtttatatgatattgacttcatcgagcacgacttcatctgcagctctatgttgattgtaatacacagctgatccatttactgatgttgtttttgctgaaaccatccagttagagaggctggcatctactgaaatatcatgtccttgaagcttagacttaggcttagagttgtatttgggatttaggtccacacaatggctgtttactggttttccatccaatttgattatgttttccttctgatgcttcacttgttgtgctcctcttgctttaactgctttccattgagtgagattttcaactggaagaagcacagaactcctatgatttcgacttactacattcgattcatctgtgttcagtttttcaacatttccatacttgttttctgcttcaatatgcaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="125622" stop="126883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125922" g_stop="126583" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E554147" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125922" e_stop="126583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCCATTTGCTTTGTTCTGTAACAGTAAAAGAATTACAACATGCATATGATATGCTATCAACCAAATACAGGTTCCCCAGATGAAAATCTTATTGTCTTTTCTTCTCTCGCGGAGAAGAGAATACAACACACTGCACACATAAATCATGC-AAAAAAACAATCAATTCTTTACACAAACATCAATCCAAATGTATTTAGGTACTGCACCTTCTCTGTTTATATGATATTGACTTCATCGAGCACGACTTCATCTGCAGCTCTATGTTGATTGTAATACACAGCTGATCCATTTACTGATGTTGTTTTTGCTGAAACCATCCAGTTAGAGAGGCTGGCATCTACTGAAATATCATGTCCTTGAAGCTTAGACTTAGGCTTAGAGTTGTATTTGGGATTTAGGTCCACACAATGGCTGTTTACTGGTTTTCCATCCAATTTGATTATGTTTTCCTTCTGATGCTTCACTTGTTGTGCTCCTCTTGCTTTAACTGCTTTCCATTGAGTGAGATTTTCAACTGGAAGAAGCACAGAACTCCTATGATTTCGACTTACTACATTCGATTCATCTGTGTTCAGTTTTTCAACATTTCCATACTTGTTTTCTGCTTCAATATGCAAAGAAT</genome_strand>
        <mrna_strand>GTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCCATTTGCTTTGTTCTGTAACAGTAAAAGAATTACAACATGCATATGATATGCTATCAACCAAATACAGGTTCCCCAGATGAAAATCTTATTGTCTTTTCTTCTCTCGCGGAGAAGAGAATACAACACACTGCACACATAAATCATGCAAAAAAAACAATCAATTCTTTACACAAACATCAATCCAAATGTATTTAGGTACTGCACCTTCTCTGTTTATATGATATTGACTTCATCGAGCACGACTTCATCTGCAGCTCTATGTTGATTGTAATACACAGCTGATCCATTTACTGATGTTGTTTTTGCTGAAACCATCCAGTTAGAGAGGCTGGCATCTACTGAAATATCATGTCCTTGAAGCTTAGACTTAGGCTTAGAGTTGTATTTGGGATTTAGGTCCACACAATGGCTGTTTACTGGTTTTCCATCCAATTTGATTATGTTTTCCTTCTGATGCTTCACTTGTTGTGCTCCTCTTGCTTTAACTGCTTTCCATTGAGTGAGATTTTCAACTGGAAGAAGCACAGAACTCCTATGATTTCGACTTACTACATTCGATTCATCTGTGTTCAGTTTTTCAACATTTCCATACTTGTTTTCTGCTTCAATATGCAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354834" ref_strand="+" ref_description="SGN-E354834 [cTOS-19-F19]">
      <seq>acagatgaatcgaatgtagtaagtcgaaatcataggagttctgtgcttcttccagttgaaaatctcactcaatggaaagcagttaaagcaagaggagcacaacaagtgaagcatcagaaggaaaacataatcaaattggatggaaaaccagtaaacagccattgtgtggacctaaatcccaaatacaactctaagcctaagtctaagcttcaaggacatgatatttcagtagatgccagcctctctaactggatggtttcagcaaaaacaacatcagtaaatggatcagctgtgtattacaatcaacatagagctgcagatgaagtcgtgctcgatgaagtcaatatcatataaacagagaaggtgcagtacctaaatacatttggattgatgtttgtgtaaagaattgattgtttttttgcatgatttatgtgtgcagtgtgttgtattctcttctccgcgagagaagaaaagacaataagattttcatctggggaacctgtatttggttgatagcatatcatatgcatgttgtaattcttttactgttacagaacaaagcaaatggacaaagaattaaagaatgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="126830" stop="125638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126530" g_stop="125933" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E354834" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126530" e_stop="125933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAAATCATT</genome_strand>
        <mrna_strand>ACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGAATGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354967" ref_strand="+" ref_description="SGN-E354967 [cTOS-19-O4]">
      <seq>acagatgaatcgaatgtagtaagtcgaaatcataggagttctgtgcttcttccagttgaaaatctcactcaatggaaagcagttaaagcaagaggagcacaacaagtgaagcatcagaaggaaaacataatcaaattggatggaaaaccagtaaacagccattgtgtggacctaaatcccaaatacaactctaagcctaagtctaagcttcaaggacatgatatttcagtagatgccagcctctctaactggatggtttcagcaaaaacaacatcagtaaatggatcagctgtgtattacaatcaacatagagctgcagatgaagtcgtgctcgatgaagtcaatatcatataaacagagaaggtgcagtacctaaatacatttggattgatgtttgtgtaaagaattgattgtttttttgcatgatttatgtgtgcagggtgttgtattctcttctccgcgagagaagaaaagacaataagattttcatctggggaacctgtatttggttgatagcatatcatatgcatgttgtaattcttttactgttacagaacaaagcaaatggacaaagaattatagatgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="126830" stop="125638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126530" g_stop="125939" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="602"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E354967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126530" e_stop="125939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAA</genome_strand>
        <mrna_strand>ACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGGGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTATAGATGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554300" ref_strand="+" ref_description="SGN-E554300 [cTSC-3-N24]">
      <seq>tacaacatgcatatgatatgctatcaaccaaatacaggttccccagatgaaaatcttattgtcttttcttctctcgcggagaagagaatacaacacactgcacacataaatcatgcaaaaaaaacaatcaattctttacacaaacatcaatccaaatgtatttaggtactgcaccttctctgtttatatgatattgacttcatcgagcacgacttcatctgcagctctatgttgattgtaatacacagctgatccatttactgatgttgtttttgctgaaaccatccagttagagaggctggcatctactgaaatatcatgtccttgaagcttagacttaggcttagagttgtatttgggatttaggtccacacaatggctgtttactggttttccatccaatttgattatgttttccttctgatgcttcacttgttgtgctcctcttgctttaactgctttccattgagtgagattttcaactggaagaagcacataactcctatgatttcgacttactacattcgattcatctgtgttcagtttttcaacatttccatacttgttttctgcttcaatatgcaaagaatctgcagattcatcaccaccaacatcatcatcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="125695" stop="126919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125995" g_stop="126619" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-E554300" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125995" e_stop="126619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACATGCATATGATATGCTATCAACCAAATACAGGTTCCCCAGATGAAAATCTTATTGTCTTTTCTTCTCTCGCGGAGAAGAGAATACAACACACTGCACACATAAATCATGC-AAAAAAACAATCAATTCTTTACACAAACATCAATCCAAATGTATTTAGGTACTGCACCTTCTCTGTTTATATGATATTGACTTCATCGAGCACGACTTCATCTGCAGCTCTATGTTGATTGTAATACACAGCTGATCCATTTACTGATGTTGTTTTTGCTGAAACCATCCAGTTAGAGAGGCTGGCATCTACTGAAATATCATGTCCTTGAAGCTTAGACTTAGGCTTAGAGTTGTATTTGGGATTTAGGTCCACACAATGGCTGTTTACTGGTTTTCCATCCAATTTGATTATGTTTTCCTTCTGATGCTTCACTTGTTGTGCTCCTCTTGCTTTAACTGCTTTCCATTGAGTGAGATTTTCAACTGGAAGAAGCACAGAACTCCTATGATTTCGACTTACTACATTCGATTCATCTGTGTTCAGTTTTTCAACATTTCCATACTTGTTTTCTGCTTCAATATGCAAAGAATCTGCAGATTCATCACCACCAACATCATCATCATCAT</genome_strand>
        <mrna_strand>TACAACATGCATATGATATGCTATCAACCAAATACAGGTTCCCCAGATGAAAATCTTATTGTCTTTTCTTCTCTCGCGGAGAAGAGAATACAACACACTGCACACATAAATCATGCAAAAAAAACAATCAATTCTTTACACAAACATCAATCCAAATGTATTTAGGTACTGCACCTTCTCTGTTTATATGATATTGACTTCATCGAGCACGACTTCATCTGCAGCTCTATGTTGATTGTAATACACAGCTGATCCATTTACTGATGTTGTTTTTGCTGAAACCATCCAGTTAGAGAGGCTGGCATCTACTGAAATATCATGTCCTTGAAGCTTAGACTTAGGCTTAGAGTTGTATTTGGGATTTAGGTCCACACAATGGCTGTTTACTGGTTTTCCATCCAATTTGATTATGTTTTCCTTCTGATGCTTCACTTGTTGTGCTCCTCTTGCTTTAACTGCTTTCCATTGAGTGAGATTTTCAACTGGAAGAAGCACATAACTCCTATGATTTCGACTTACTACATTCGATTCATCTGTGTTCAGTTTTTCAACATTTCCATACTTGTTTTCTGCTTCAATATGCAAAGAATCTGCAGATTCATCACCACCAACATCATCATCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341895" ref_strand="+" ref_description="SGN-E341895 [cTOF-9-G17]">
      <seq>tctaaaattccttctccattcttctctgtcgattttttcttttttgggggaaaatcaagaaaacagagatcttgaaaacaaaaacaaaaacaaaaacaaatgggatgttttcttggatgttttggttttacaaacaagaaacaaaagcgtataaagccttgtaacaagtttcaagtgcatcaaaagtatgtaccactggattctgagaaggaaattgttgtaaattcagcaaattctgagcccagggataagccaaaagaatcatcaaaacgtaaggtgaaaaagaaagtgagtttcaatttggatgtgaagacttacgagagaatacaagatgatgaaaacaacacaacatatttctcagaggaagaggagaagacaaataaacaagaaacagccaaagcaagtatgtctatgtacccttcgagtcatcgatactataactgcaacaatagctacgatgaggaggaagacgagataatacttgaggacagtgatatcgatgatctagatgacgatgaagaagaagagactatggtgttagtgatgacgatgatgatgatgatgttggtggtgatgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="128472" stop="126287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128172" g_stop="127999" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127458" g_stop="127388" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="245" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126924" g_stop="126587" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="582" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E341895" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128172" e_stop="127999"/>
          <exon e_start="127458" e_stop="127388"/>
          <exon e_start="126924" e_stop="126587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAAGTAAGTTGCGTCTTAAAATTCAATTTTTTGTGTTCATTTATTTGTAATCTAAAGACTTGAGTCGTTTAGATACAGTGACGAAGACAAGATTTTTACTGAAAAAAATTGGATCTTTGTTTTTTTAGATGAATCCTTTCGCCTCTTTAGCTTAGAAATGATGGTTGATATGTGTTACCTGAGGTGGGGTAGAGGCGGAGCTAGGTCGGGGTTTATGGGTACAGATGAACACAGTAGCTTTTTCGGCAGATCCTGTATTTGTATTAGAAAATTTAAATAAATATCTATGTGTATTGGTTTGTGGATCTCTAATAAAATTGATTCACAGTGAAAATGTATTTTATATTAATGCTCAAATTCCTAGTTTTGATTTCGCCTCGTAAAAAGGTTAAGTTTGCTTACATGTATACTCTACCCTAGCTCCCTATACCTACTCGATGGGATTATATTGAATATGTTGTTTGAATTGACGTAAAAAAAAAATATCATTTTGTTTGAATATGAAGAAGTTTGCTTTTTTTTTTTTTAAATATTGTTTTTTAGGTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAGGTGAGTTTAGCAATTCATGTTTTTTTCTTTTTCCACTTTTTGATAGTAATCATGTCTGGATAAGTTTATGCATCTTGATAATTTCATTGAGTTTGCTTTACTTGAGTCGAGAGTGTATCAGAAATCATCGGAACACATGAGTTATTTCAGTTTATCTCAGCTAGTAGTTAGTCGTATTAAGGGTAATACTGTGTACACATCAGTGTCTAAAAATTCCATTTGTCTGTCCCTAAGTCTCACTTGTGAGATTATATTGGGTATGTTGTTGTTGTTATTGACTATTTCTTCGGGGTTATGACAATCAAGACTTAGGCAAATGAGAAGAATACATCTAAAGTTTTTTTTATCTCGATTGAGATTTGAACCTTAATCTATTTTCATTGACTGCTAGGTTATATCATGTTAGGTATTCTCATCAACTTCATTAACGACTAGGTCGTTTTCATGTGTTGTTTGTTTGTAGGGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAGAAGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTG</genome_strand>
        <mrna_strand>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAG-AGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412947" ref_strand="+" ref_description="SGN-E412947 [STM-17-G9]">
      <seq>attccttctccattcttccctgcattttttttttttggggaaatcaagaaagtagagatcttgaaaacaaaaacaaaaacaaaaaaatgggatgttttcttggatgttttggttttacaaacaagaaacaaaagcgtataaggccttgtaacaagtttcaagtgcatcaaaagtatgtaccactggattctgagaaggaaattattgtagattcagcaaattctgtgcccagggataagccaaaagaatcatcaaaacgtaaggtgaaaaagaaagtgagcttcaatttggatgtgaagacttatgagagaattcaagatgatgaaaacaacacaacatatttctcagaggaagaagaggagaagacaaataaacaagaaacagctaaagcaagtatgtctatgtacccttcgagtcatcgatactataactgcaacaatagctacgatgaggaggaagacgagataacacttgaggacagtgatatcgatgatcttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="128466" stop="126358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128166" g_stop="127999" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127458" g_stop="127388" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="232" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126924" g_stop="126658" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="502" r_length="270" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E412947" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128166" e_stop="127999"/>
          <exon e_start="127458" e_stop="127388"/>
          <exon e_start="126924" e_stop="126658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAAGTAAGTTGCGTCTTAAAATTCAATTTTTTGTGTTCATTTATTTGTAATCTAAAGACTTGAGTCGTTTAGATACAGTGACGAAGACAAGATTTTTACTGAAAAAAATTGGATCTTTGTTTTTTTAGATGAATCCTTTCGCCTCTTTAGCTTAGAAATGATGGTTGATATGTGTTACCTGAGGTGGGGTAGAGGCGGAGCTAGGTCGGGGTTTATGGGTACAGATGAACACAGTAGCTTTTTCGGCAGATCCTGTATTTGTATTAGAAAATTTAAATAAATATCTATGTGTATTGGTTTGTGGATCTCTAATAAAATTGATTCACAGTGAAAATGTATTTTATATTAATGCTCAAATTCCTAGTTTTGATTTCGCCTCGTAAAAAGGTTAAGTTTGCTTACATGTATACTCTACCCTAGCTCCCTATACCTACTCGATGGGATTATATTGAATATGTTGTTTGAATTGACGTAAAAAAAAAATATCATTTTGTTTGAATATGAAGAAGTTTGCTTTTTTTTTTTTTAAATATTGTTTTTTAGGTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAGGTGAGTTTAGCAATTCATGTTTTTTTCTTTTTCCACTTTTTGATAGTAATCATGTCTGGATAAGTTTATGCATCTTGATAATTTCATTGAGTTTGCTTTACTTGAGTCGAGAGTGTATCAGAAATCATCGGAACACATGAGTTATTTCAGTTTATCTCAGCTAGTAGTTAGTCGTATTAAGGGTAATACTGTGTACACATCAGTGTCTAAAAATTCCATTTGTCTGTCCCTAAGTCTCACTTGTGAGATTATATTGGGTATGTTGTTGTTGTTATTGACTATTTCTTCGGGGTTATGACAATCAAGACTTAGGCAAATGAGAAGAATACATCTAAAGTTTTTTTTATCTCGATTGAGATTTGAACCTTAATCTATTTTCATTGACTGCTAGGTTATATCATGTTAGGTATTCTCATCAACTTCATTAACGACTAGGTCGTTTTCATGTGTTGTTTGTTTGTAGGGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGA-G--GAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGA</genome_strand>
        <mrna_strand>ATTCCTTCTCCATTCTTCCCTG-C-ATTTTTT-TTTTTT-GGGG-AAATCAAGAAAGTAGAGATCTTGAAAACAAAAACAAAAAC-AAAA-AAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAGGCCTTGTAACAAGTTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTATTGTAGATTCAGCAAATTCTGTGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGCTTCAATTTGGATGTGAAGACTTATGAGAGAATTCAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAAGAGGAGAAGACAAATAAACAAGAAACAGCTAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAACACTTGAGGACAGTGATATCGATGATCTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471432" ref_strand="+" ref_description="SGN-E471432 [cSTB-24-C9]">
      <seq>attccttctccattcttccctgcattttttttttttggggaaatcaagaaagtagagatcttgaaaacaaaaacaaaaacaaaaaaatgggatgttttcttggatgttttggttttacaaacaagaaacaaaagcgtataaggccttgtaacaagtttcaagtgcatcaaaagtatgtaccactggattctgagaaggaaattattgtagattcagcaaattctgtgcccagggataagccaaaagaatcatcaaaacgtaaggtgaaaaagaaagtgagcttcaatttggatgtgaagacttatgagagaattcaagatgatgaaaacaacacaacatatttctcagaggaagaagaggagaagacaaataaacaagaaacagctaaagcaagtatgtctatgtacccttcgagtcatcgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="128466" stop="126434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128166" g_stop="127999" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127458" g_stop="127388" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="232" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126924" g_stop="126734" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="426" r_length="194" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E471432" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128166" e_stop="127999"/>
          <exon e_start="127458" e_stop="127388"/>
          <exon e_start="126924" e_stop="126734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAAGTAAGTTGCGTCTTAAAATTCAATTTTTTGTGTTCATTTATTTGTAATCTAAAGACTTGAGTCGTTTAGATACAGTGACGAAGACAAGATTTTTACTGAAAAAAATTGGATCTTTGTTTTTTTAGATGAATCCTTTCGCCTCTTTAGCTTAGAAATGATGGTTGATATGTGTTACCTGAGGTGGGGTAGAGGCGGAGCTAGGTCGGGGTTTATGGGTACAGATGAACACAGTAGCTTTTTCGGCAGATCCTGTATTTGTATTAGAAAATTTAAATAAATATCTATGTGTATTGGTTTGTGGATCTCTAATAAAATTGATTCACAGTGAAAATGTATTTTATATTAATGCTCAAATTCCTAGTTTTGATTTCGCCTCGTAAAAAGGTTAAGTTTGCTTACATGTATACTCTACCCTAGCTCCCTATACCTACTCGATGGGATTATATTGAATATGTTGTTTGAATTGACGTAAAAAAAAAATATCATTTTGTTTGAATATGAAGAAGTTTGCTTTTTTTTTTTTTAAATATTGTTTTTTAGGTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAGGTGAGTTTAGCAATTCATGTTTTTTTCTTTTTCCACTTTTTGATAGTAATCATGTCTGGATAAGTTTATGCATCTTGATAATTTCATTGAGTTTGCTTTACTTGAGTCGAGAGTGTATCAGAAATCATCGGAACACATGAGTTATTTCAGTTTATCTCAGCTAGTAGTTAGTCGTATTAAGGGTAATACTGTGTACACATCAGTGTCTAAAAATTCCATTTGTCTGTCCCTAAGTCTCACTTGTGAGATTATATTGGGTATGTTGTTGTTGTTATTGACTATTTCTTCGGGGTTATGACAATCAAGACTTAGGCAAATGAGAAGAATACATCTAAAGTTTTTTTTATCTCGATTGAGATTTGAACCTTAATCTATTTTCATTGACTGCTAGGTTATATCATGTTAGGTATTCTCATCAACTTCATTAACGACTAGGTCGTTTTCATGTGTTGTTTGTTTGTAGGGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGA-G--GAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACT</genome_strand>
        <mrna_strand>ATTCCTTCTCCATTCTTCCCTG-C-ATTTTTT-TTTTTT-GGGG-AAATCAAGAAAGTAGAGATCTTGAAAACAAAAACAAAAAC-AAAA-AAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAGGCCTTGTAACAAGTTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTATTGTAGATTCAGCAAATTCTGTGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGCTTCAATTTGGATGTGAAGACTTATGAGAGAATTCAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAAGAGGAGAAGACAAATAAACAAGAAACAGCTAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338183" ref_strand="+" ref_description="SGN-E338183 [cTOE-13-F2]">
      <seq>ccttctgcattcttctctgtcgattttttcttttttgggggaaaatcaagaaaacagagatcttgaaaacaaaaacaaaaacaaaaacaaatgggatgttttcttggatgttttggttttacaaacaagaaacaaaagcgtataaagccttgtaacaagtttcaagtgcatcaaaagtatgtaccactggattctgagaaggaaattgttgtaaattcagcaaattctgagcccatggataagccaaaagaatcatcaaaacgtaaggtgaaaaagaaagtgagtttcaatttggatgtgaagacttacgagagaatacaagatgatgaaaacaacacaacatatttctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="128463" stop="126509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128163" g_stop="127999" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127458" g_stop="127388" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="236" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126924" g_stop="126809" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="352" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-E338183" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128163" e_stop="127999"/>
          <exon e_start="127458" e_stop="127388"/>
          <exon e_start="126924" e_stop="126809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAAGTAAGTTGCGTCTTAAAATTCAATTTTTTGTGTTCATTTATTTGTAATCTAAAGACTTGAGTCGTTTAGATACAGTGACGAAGACAAGATTTTTACTGAAAAAAATTGGATCTTTGTTTTTTTAGATGAATCCTTTCGCCTCTTTAGCTTAGAAATGATGGTTGATATGTGTTACCTGAGGTGGGGTAGAGGCGGAGCTAGGTCGGGGTTTATGGGTACAGATGAACACAGTAGCTTTTTCGGCAGATCCTGTATTTGTATTAGAAAATTTAAATAAATATCTATGTGTATTGGTTTGTGGATCTCTAATAAAATTGATTCACAGTGAAAATGTATTTTATATTAATGCTCAAATTCCTAGTTTTGATTTCGCCTCGTAAAAAGGTTAAGTTTGCTTACATGTATACTCTACCCTAGCTCCCTATACCTACTCGATGGGATTATATTGAATATGTTGTTTGAATTGACGTAAAAAAAAAATATCATTTTGTTTGAATATGAAGAAGTTTGCTTTTTTTTTTTTTAAATATTGTTTTTTAGGTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAGGTGAGTTTAGCAATTCATGTTTTTTTCTTTTTCCACTTTTTGATAGTAATCATGTCTGGATAAGTTTATGCATCTTGATAATTTCATTGAGTTTGCTTTACTTGAGTCGAGAGTGTATCAGAAATCATCGGAACACATGAGTTATTTCAGTTTATCTCAGCTAGTAGTTAGTCGTATTAAGGGTAATACTGTGTACACATCAGTGTCTAAAAATTCCATTTGTCTGTCCCTAAGTCTCACTTGTGAGATTATATTGGGTATGTTGTTGTTGTTATTGACTATTTCTTCGGGGTTATGACAATCAAGACTTAGGCAAATGAGAAGAATACATCTAAAGTTTTTTTTATCTCGATTGAGATTTGAACCTTAATCTATTTTCATTGACTGCTAGGTTATATCATGTTAGGTATTCTCATCAACTTCATTAACGACTAGGTCGTTTTCATGTGTTGTTTGTTTGTAGGGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAG</genome_strand>
        <mrna_strand>CCTTCTGCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>245</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="3968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="484"/>
            <exon e_start="1084" e_stop="1164"/>
            <exon e_start="2424" e_stop="2620"/>
            <exon e_start="2706" e_stop="2805"/>
            <exon e_start="3521" e_stop="3968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="0.971"/>
          <exon-intron don_prob="0.995" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="1" e_stop="484" e_length="484"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="485" i_stop="1083" i_length="599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1084" e_stop="1164" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.960">
            <gDNA_intron_boundary i_start="1165" i_stop="2423" i_length="1259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2424" e_stop="2620" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="2621" i_stop="2705" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2706" e_stop="2805" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.682" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2806" i_stop="3520" i_length="715"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3521" e_stop="3968" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8" stop="397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11" stop="484"/>
              <exon start="1084" stop="1128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="255" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="402" stop="484"/>
              <exon start="1084" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1097" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1097" stop="1164"/>
              <exon start="2424" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2490" stop="2620"/>
              <exon start="2706" stop="2805"/>
              <exon start="3521" stop="3918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603141" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3526" stop="3884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG : GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA : ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG : TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT : GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</gDNA_template>
            <first_frame> *  C  L  P  F  C  F  L  I  L  F  L  G  W  *  H  V  D  T  A  V  S  Q  F  H  H  *  F  *  D  K  D  Q  S  S  E  A  C  T  F  R  C  N  R  L  S  A  I  F  G  E  R  C  W  N  R  L  S  G  R  S  S  R  E  A  P  K  Y  *  R  D  T  D  R  G  T  N  T  L  Y  *  V  A  D  C  P  I  *  A  R  T  R  G  S  K  R  V  Q  E  A  F  R  T  G  E  C  Y  N  *  Q  H  D  R  C  *  P  L  C  L  C  Q  L  L  L  G  F  I  S  V  S  *  N  A  A  G  I  C  R  V  L  Q  K  R  S  P  L  S  C  I  R  F  S  G  F  S  F  G  V  I  Q  A   : G  F  G  V  *  F  V  L  V  C  F  T  G  R  Q  R  I  Q  F  W  G  V  A  C  S  S  Y   : N  K  E  F  G  R  D  T  S  *  M  A  I  S  Y  P  *  S  I  Q  H  W  *  F  S  S  L  S  R  I  V  P  C  P  *  S  C  F  K  C  S  T  S  I  I  A  E  R  E  K  A  S  R  E  D  Q  H  S  V  L  D  G  N  H  L  Q  :  S  P  S  R  G  *  N  Y  S  I  E  C  H  C  R  A  H  *  T  *  R  G  R  C  R  V  S  L  N  E  E  S  L   : C  T  S  D  R  G  N  N  R  S  S  G  R  D  C  S  R  V  L  G  S  T  K  S  F  G  C  S  S  D  Q  V  T  A  R  S  A  R  Q  L  G  G  *  S  T  H  C  L  V  I  C  G  S  *  N  S  *  F  G  F  I  I  I  L  V  S  Q  F  A  L  P  G  P  C  S  T  P  I  S  S  S  S  L  F  C  C  A  Y  E  S  L  *  H  N  R  G  I  L  *  D  I  C  L  V  F  S  G  L  H  S  V  L  W  L  I  S  Q  I  I  D  L  S  L  F  S  G  F  R  C  L  F  S  H  H  F  V  V  Y  R  L  L  *  R  R  H  R  L  N  G   </first_frame>
            <second_frame>  N  A  F  R  F  V  S  L  F  C  S  *  A  G  D  T  L  I  Q  L  Y  H  N  F  I  T  D  F  E  T  K  I  N  L  L  K  L  A  H  F  A  V  I  V  S  R  Q  Y  S  E  K  D  A  G  I  G  Y  L  E  G  V  A  E  K  L  Q  N  T  K  E  T  R  I  E  E  P  I  L  Y  I  K  L  Q  I  A  L  F  K  L  E  Q  G  D  Q  K  E  C  K  R  L  L  E  Q  G  N  A  T  I  D  S  M  T  D  V  D  P  S  V  Y  A  S  Y  Y  W  V  S  S  Q  Y  H  K  T  R  Q  E  F  A  E  F  Y  K  S  A  L  L  Y  L  A  Y  V  S  V  D  S  L  S  E  S  F  K  L  :  D  L  A  F  D  L  S  L  S  A  L  L  G  D  N  V  Y  N  F  G  E  L  L  A  H  P  I  :  I  K  S  L  V  G  T  Q  V  E  W  L  Y  H  I  L  E  A  F  N  T  G  D  L  V  R  Y  Q  E  L  C  R  V  H  K  A  A  L  S  A  Q  P  A  L  L  Q  N  E  K  K  L  L  E  K  I  N  I  L  C  L  M  E  I  I  F  S :   R  P  A  E  D  R  T  I  P  L  S  A  I  A  E  R  T  K  L  S  V  E  D  V  E  Y  L  L  M  K  S  L  S  :  V  H  L  I  E  G  I  I  D  Q  V  E  G  T  V  H  V  S  W  V  Q  P  R  V  L  G  V  P  Q  I  K  S  L  R  D  R  L  D  N  W  V  D  K  V  H  T  A  L  L  S  V  E  A  E  T  P  D  L  V  S  S  *  S  *  F  P  S  L  H  F  L  V  P  A  A  L  R  F  L  R  P  L  F  F  A  V  L  T  R  A  C  N  T  T  E  E  F  C  E  T  F  V  *  F  S  Q  A  Y  T  L  Y  C  G  L  Y  P  K  S  L  I  C  H  C  F  L  D  L  G  A  C  S  V  T  T  L  *  S  I  D  Y  Y  S  D  D  I  V  L  T  V  </second_frame>
            <third_frame>   M  P  S  V  L  F  P  Y  F  V  L  R  L  V  T  R  *  Y  S  C  I  T  I  S  S  L  I  L  R  Q  R  S  I  F  *  S  L  H  I  S  L  *  S  S  L  G  N  I  R  R  K  M  L  E  *  V  I  W  K  E  *  Q  R  S  S  K  I  L  K  R  H  G  *  R  N  Q  Y  F  I  L  S  C  R  L  P  Y  L  S  *  N  K  G  I  K  K  S  A  R  G  F  *  N  R  G  M  L  Q  L  T  A  *  P  M  L  T  P  L  F  M  P  V  T  I  G  F  H  L  S  I  I  K  R  G  R  N  L  Q  S  F  T  K  A  L  S  S  I  L  H  T  F  Q  W  I  L  F  R  S  H  S  S  W :   I  W  R  L  I  C  P  C  L  L  Y  W  E  T  T  Y  T  I  L  G  S  C  L  L  I  L  * :   *  R  V  W  *  G  H  K  L  N  G  Y  I  I  S  L  K  H  S  T  L  V  I  *  F  V  I  K  N  C  A  V  S  I  K  L  L  *  V  L  N  Q  H  Y  C  R  T  R  K  S  F  S  R  R  S  T  F  C  A  *  W  K  S  S  S   : V  A  Q  Q  R  I  E  L  F  H  *  V  P  L  Q  S  A  L  N  L  A  W  K  M  *  S  I  S  *  *  R  V  S  L :   Y  I  *  *  R  E  *  S  I  K  W  K  G  L  F  T  C  P  G  F  N  Q  E  F  W  V  F  L  R  S  S  H  C  E  I  G  *  T  I  G  W  I  K  Y  T  L  P  C  Y  L  W  K  L  K  L  L  I  W  F  H  H  N  L  S  F  P  V  C  T  S  W  S  L  Q  H  S  D  F  F  V  L  S  F  L  L  C  L  R  E  L  V  T  Q  Q  R  N  F  V  R  H  L  F  S  F  L  R  P  T  L  C  T  V  A  Y  I  P  N  H  *  S  V  T  V  F  W  I  *  V  L  V  Q  S  P  L  C  S  L  *  T  T  I  A  T  T  S  S  *  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38" stop="484"/>
                    <exon start="1084" stop="1164"/>
                    <exon start="2424" stop="2620"/>
                    <exon start="2706" stop="2805"/>
                    <exon start="3521" stop="3706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGDTLIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKDAGIGYLEGVAEKLQNTKETRIEEPILYIKLQIALFKLEQGDQKECKRLLEQGNATIDSMTDVDPSVYASYYWVSSQYHKTRQEFAEFYKSALLYLAYVSVDSLSESFKLDLAFDLSLSALLGDNVYNFGELLAHPIIKSLVGTQVEWLYHILEAFNTGDLVRYQELCRVHKAALSAQPALLQNEKKLLEKINILCLMEIIFSRPAEDRTIPLSAIAERTKLSVEDVEYLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGVPQIKSLRDRLDNWVDKVHTALLSVEAETPDLVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9920" PGL_stop="6244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9920" e_stop="9516"/>
            <exon e_start="9407" e_stop="9357"/>
            <exon e_start="9247" e_stop="9131"/>
            <exon e_start="7677" e_stop="7597"/>
            <exon e_start="7521" e_stop="7423"/>
            <exon e_start="6656" e_stop="6244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.928"/>
          <exon-intron don_prob="0.333" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="9920" e_stop="9516" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9407" e_stop="9357" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.333" acc_prob="0.899">
            <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9247" e_stop="9131" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.832">
            <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7677" e_stop="7597" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.892" acc_prob="0.933">
            <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7521" e_stop="7423" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766"/>
          </intron>
          <exon e_serial="6" e_score="0.935">
            <gDNA_exon_boundary e_start="6656" e_stop="6244" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9920" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9920" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9780" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7423"/>
              <exon start="6656" stop="6437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9779" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7423"/>
              <exon start="6656" stop="6533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9763" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7423"/>
              <exon start="6656" stop="6433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9563" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9396" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7423"/>
              <exon start="6656" stop="6244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426543" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG : GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA : TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG : ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG : GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG : TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGACGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGGTATGTAGTCAACTCATACTAGCCTGCATATTATAGTAATTCGAAAAGTTTGTGAGGTGATGCTACTCTACTTGACCAAAGTTATAACTTAACTTGAAACTCTTTAAACAGAAACCTTATTAA</gDNA_template>
            <first_frame> E  T  *  K  Q  P  A  I  S  *  P  Y  D  I  F  L  R  L  P  T  V  H  A  C  E  *  A  S  D  S  V  K  F  A  E  S  A  S  K  M  D  P  F  C  I  V  P  T  I  W  P  F  *  P  L  I  Q  T  I  L  L  K  E  *  E  K  K  A  T  P  F  N  D  L  F  P  F  S  R  I  I  H  S  F  W  L  N  I  H  R  F  P  L  L  F  V  T  F  I  T  K  D  F  T  F  L  K  I  S  K  A  K  Q  E  E  E  V  E  S  F  E  L  F  V  *  F  *  S  I  F  *  V  R  T  Q  :  E  K  R  *  L  V  D  S  *  *  L  L  Q  V  K  R  Q  :  C  I  Q  G  L  R  *  G  Y  R  K  K  K  M  I  S  M  L  I  S  L  C  H  L  *  R  L  L  N  P  F  P  *  V  T  S  L  L  Q  :  M  I  R  L  H  Q  L  *  G  Y  P  E  H  V  F  *  A  Q  T  D  M  D  F  H  H  *  E  :  G  E  *  R  K  I  T  K  A  F  L  V  E  A  N  Q  I  Q  G  P  L  L  S  L  D  H  V  Q  S  Y  Q  A  L  :  L  M  I  K  *  *  A  R  G  A  R  R  K  Q  K  Q  F  Q  T  *  R  I  T  I  H  V  K  T  D  I  T  S  S  A  K  L  F  Q  N  Q  F  K  I  H  I  I  Q  V  E  I  S  A  Q  K  R  P  I  M  G  N  L  I  L  E  Q  E  Q  G  *  *  K  V  I  Q  V  E  E  H  T  F  K  K  T  I  N  I  L  F  V  Q  K  *  N  S  K  Q  G  Y  V  V  N  S  Y  *  P  A  Y  Y  S  N  S  K  S  L  *  G  D  A  T  L  L  D  Q  S  Y  N  L  T  *  N  S  L  N  R  N  L  I   </first_frame>
            <second_frame>  K  L  E  S  N  L  Q  L  V  D  H  M  I  S  F  F  D  Y  L  P  Y  M  L  V  N  K  H  Q  I  L  S  N  L  P  K  V  L  Q  K  W  T  L  S  V  *  S  P  Q  F  G  P  F  D  L  S  Y  K  Q  Y  C  *  K  N  R  K  R  K  Q  P  L  L  M  I  C  F  H  F  Q  E  S  F  I  V  F  G  *  I  F  T  G  F  H  S  F  L  S  L  S  L  P  K  I  S  P  F  *  R  Y  L  K  P  N  R  R  R  R  W  R  V  L  S  Y  L  Y  S  S  K  A  Y  S  K  L  G  L  R :   K  R  D  S  W  L  T  L  D  S  F  C  K  L  K  D  N :   V  S  K  G  *  G  E  G  T  E  R  R  R  *  S  V  C  L  S  V  F  A  I  F  E  G  F  *  I  P  F  H  K  *  L  L  F  F  R :   *  F  A  Y  I  S  C  E  D  T  P  S  M  Y  F  K  P  R  Q  T  W  T  S  I  I  E  R :   E  N  E  G  K  *  P  K  H  F  W  W  K  Q  T  K  Y  K  G  H  F  C  P  S  T  T  C  S  L  I  K  P  C :   *  *  S  N  D  K  H  E  E  Q  D  E  S  R  S  S  F  R  L  E  E  S  Q  Y  M  S  K  Q  T  S  H  Q  V  Q  N  F  S  K  I  N  S  R  F  T  S  Y  K  W  K  *  V  L  K  R  D  R  *  W  E  T  *  S  S  S  K  S  K  A  S  E  R  *  S  K  S  K  N  T  P  S  R  R  R  S  T  S  C  S  F  K  S  K  T  V  S  R  G  M  *  S  T  H  T  S  L  H  I  I  V  I  R  K  V  C  E  V  M  L  L  Y  L  T  K  V  I  T  *  L  E  T  L  *  T  E  T  L  L  </second_frame>
            <third_frame>   N  L  K  A  T  C  N  *  L  T  I  *  Y  L  S  S  I  T  Y  R  T  C  L  *  I  S  I  R  F  C  Q  I  C  R  K  C  F  K  N  G  P  F  L  Y  S  P  H  N  L  A  L  L  T  S  H  T  N  N  I  V  K  R  I  G  K  E  S  N  P  F  *  *  F  V  S  I  F  K  N  H  S  *  F  L  V  E  Y  S  Q  V  S  T  P  F  C  H  F  H  Y  Q  R  F  H  L  F  K  D  I  *  S  Q  T  G  G  G  G  G  E  F  *  A  I  C  I  V  L  K  H  I  L  S  *  D  S   : G  K  E  I  A  G  *  L  L  I  A  S  A  S  *  K  T   : M  Y  P  R  V  K  V  R  V  Q  K  E  E  D  D  Q  Y  A  Y  Q  S  L  P  S  L  K  A  F  E  S  L  S  I  S  D  F  S  S  S   : D  D  S  P  T  S  V  V  R  I  P  R  A  C  I  L  S  P  D  R  H  G  L  P  S  L  R   : G  R  M  K  E  N  N  Q  S  I  F  G  G  S  K  P  N  T  R  A  T  S  V  P  R  P  R  A  V  L  S  S  P   : V  N  D  Q  M  I  S  T  R  S  K  T  K  A  E  A  V  S  D  L  K  N  H  N  T  C  Q  N  R  H  H  I  K  C  K  T  F  P  K  S  I  Q  D  S  H  H  T  S  G  N  K  C  S  K  E  T  D  N  G  K  L  D  P  R  A  R  A  R  L  V  K  G  D  P  S  R  R  T  H  L  Q  E  D  D  Q  H  P  V  R  S  K  V  K  Q  *  A  G  V  C  S  Q  L  I  L  A  C  I  L  *  *  F  E  K  F  V  R  *  C  Y  S  T  *  P  K  L  *  L  N  L  K  L  F  K  Q  K  P  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9363" stop="9357"/>
                    <exon start="9247" stop="9131"/>
                    <exon start="7677" stop="7597"/>
                    <exon start="7521" stop="7423"/>
                    <exon start="6656" stop="6373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTMYPRVKVRVQKEEDDQYAYQSLPSLKAFESLSISDFSSSDDSPTSVVRIPRACILSPDRHGLPSLRGRMKENNQSIFGGSKPNTRATSVPRPRAVLSSPVNDQMISTRSKTKAEAVSDLKNHNTCQNRHHIKCKTFPKSIQDSHHTSGNKCSKETDNGKLDPRARARLVKGDPSRRTHLQEDDQHPVRSKVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7678" e_stop="7423"/>
            <exon e_start="6656" e_stop="6471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.949"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="7678" e_stop="7423" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="6656" e_stop="6471" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7678" stop="7423"/>
              <exon start="6656" stop="6471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG : TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATC</gDNA_template>
            <first_frame> D  D  S  P  T  S  V  V  R  I  P  R  A  C  I  L  S  P  D  R  H  G  L  P  S  L  R  G  Y  I  L  L  *  Q  L  L  L  P  H  T  L  Q  V  G  *  H  S  L  G  *  L  A  G  R  M  K  E  N  N  Q  S  I  F  G  G  S  K  P  N  T  R  A  T  S  V  P  R  P  R  A  V  L  S  S  P   : V  N  D  Q  M  I  S  T  R  S  K  T  K  A  E  A  V  S  D  L  K  N  H  N  T  C  Q  N  R  H  H  I  K  C  K  T  F  P  K  S  I  Q  D  S  H  H  T  S  G  N  K  C  S  K  E  T  D  N  G  K  L  D  </first_frame>
            <second_frame>  M  I  R  L  H  Q  L  *  G  Y  P  E  H  V  F  *  A  Q  T  D  M  D  F  H  H  *  E  V  T  Y  F  F  S  N  F  C  Y  H  T  L  C  K  W  V  D  I  H  S  V  D  W  Q  G  E  *  R  K  I  T  K  A  F  L  V  E  A  N  Q  I  Q  G  P  L  L  S  L  D  H  V  Q  S  Y  Q  A  L  :  L  M  I  K  *  *  A  R  G  A  R  R  K  Q  K  Q  F  Q  T  *  R  I  T  I  H  V  K  T  D  I  T  S  S  A  K  L  F  Q  N  Q  F  K  I  H  I  I  Q  V  E  I  S  A  Q  K  R  P  I  M  G  N  L  I </second_frame>
            <third_frame>   *  F  A  Y  I  S  C  E  D  T  P  S  M  Y  F  K  P  R  Q  T  W  T  S  I  I  E  R  L  H  T  S  L  A  T  F  V  T  T  H  F  A  S  G  L  T  F  T  R  L  I  G  R  E  N  E  G  K  *  P  K  H  F  W  W  K  Q  T  K  Y  K  G  H  F  C  P  S  T  T  C  S  L  I  K  P  C :   *  *  S  N  D  K  H  E  E  Q  D  E  S  R  S  S  F  R  L  E  E  S  Q  Y  M  S  K  Q  T  S  H  Q  V  Q  N  F  S  K  I  N  S  R  F  T  S  Y  K  W  K  *  V  L  K  R  D  R  *  W  E  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7528" stop="7423"/>
                    <exon start="6656" stop="6472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAGRMKENNQSIFGGSKPNTRATSVPRPRAVLSSPVNDQMISTRSKTKAEAVSDLKNHNTCQNRHHIKCKTFPKSIQDSHHTSGNKCSKETDNGKLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11050" PGL_stop="13673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11050" e_stop="11164"/>
            <exon e_start="11929" e_stop="13673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.920" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="11050" e_stop="11164" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11929" e_stop="13673" e_length="1745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11050" stop="11164"/>
              <exon start="11929" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="11164"/>
              <exon start="11929" stop="12486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="11164"/>
              <exon start="11929" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11102" stop="11164"/>
              <exon start="11929" stop="12606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11103" stop="11164"/>
              <exon start="11929" stop="12345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="11929" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11136" stop="11164"/>
              <exon start="11929" stop="12520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11164"/>
              <exon start="11929" stop="12286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11967" stop="12205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11978" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12001" stop="12599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12044" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12111" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12116" stop="12728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12247" stop="12960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="13022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="12810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12344" stop="13157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12370" stop="12923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12523" stop="13350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12587" stop="13342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12614" stop="13147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12616" stop="13231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12630" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12663" stop="13501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12740" stop="13356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12792" stop="13408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12898" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12973" stop="13673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12979" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12982" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13155" stop="13635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13175" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13185" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13194" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13223" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> *  Y  I  V  C  V  D  Y  Y  *  G  S  R  *  H  L  L  S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : V  Y  S  F  G  C  L  K  L  E  F  G  C  S  D  A  N  D  S  C  A  Y  Q  N  G  S  F  C  L  C  D  V  I  S  F  L  N  F  R  S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q  G  W  E  K  I  D  G  R  C  C  C  H  R  *  K  G  V  S  *  A  R  R  *  C  T  L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </first_frame>
            <second_frame>  N  I  *  F  A  L  T  T  I  E  V  V  G  S  I  Y  Y  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  F  I  H  L  D  A  *  S  W  N  S  G  A  L  M  Q  M  I  R  V  R  T  R  M  A  L  S  A  C  A  M  L  Y  R  S  S  I  S  G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  V  G  K  K  L  M  E  G  A  A  A  T  V  K  K  V  S  L  E  L  G  G  N  A  P  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </second_frame>
            <third_frame>   I  Y  S  L  R  *  L  L  L  R  *  *  V  A  S  I  I  F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  S :   L  F  I  W  M  L  E  V  G  I  R  V  L  *  C  K  *  F  V  C  V  P  E  W  L  F  L  L  V  R  C  Y  I  V  P  Q  F  Q  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  R  L  G  K  N  *  W  K  V  L  L  P  P  L  K  R  C  L  L  S  *  A  V  M  H  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11950" stop="13539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNSGALMQMIRVRTRMALSACAMLYRSSISGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKVGKKLMEGAAATVKKVSLELGGNAPCIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGIVGVNEGLVSTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11074" e_stop="11164"/>
            <exon e_start="12044" e_stop="13673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11074" e_stop="11164" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="11165" i_stop="12043" i_length="879"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="12044" e_stop="13673" e_length="1630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11074" stop="11164"/>
              <exon start="12044" stop="12481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11097" stop="11164"/>
              <exon start="12044" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11099" stop="11164"/>
              <exon start="12044" stop="12680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11103" stop="11164"/>
              <exon start="12044" stop="12420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="12044" stop="12787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="12044" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="12044" stop="12680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="12044" stop="12517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12044" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12111" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12116" stop="12728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12247" stop="12960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="13022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="12810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12344" stop="13157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12370" stop="12923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12523" stop="13350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12587" stop="13342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12614" stop="13147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12616" stop="13231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12630" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12663" stop="13501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12740" stop="13356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12792" stop="13408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12898" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12973" stop="13673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12979" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12982" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13155" stop="13635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13175" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13185" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13194" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13223" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> Y  *  G  S  R  *  H  L  L  S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  V  G  K  K  L  M  E  G  A  A  A  T  V  K  K  V  S  L  E  L  G  G  N  A  P  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </first_frame>
            <second_frame>  I  E  V  V  G  S  I  Y  Y  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  R  L  G  K  N  *  W  K  V  L  L  P  P  L  K  R  C  L  L  S  *  A  V  M  H  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </second_frame>
            <third_frame>   L  R  *  *  V  A  S  I  I  F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  R :   S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q  G  W  E  K  I  D  G  R  C  C  C  H  R  *  K  G  V  S  *  A  R  R  *  C  T  L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11140" stop="11164"/>
                    <exon start="12044" stop="13539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQFSDGKGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKVGKKLMEGAAATVKKVSLELGGNAPCIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGIVGVNEGLVSTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11101" e_stop="11164"/>
            <exon e_start="11929" e_stop="12792"/>
            <exon e_start="12866" e_stop="13673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11101" e_stop="11164" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="11929" e_stop="12792" e_length="864"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12793" i_stop="12865" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="12866" e_stop="13673" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="11164"/>
              <exon start="11929" stop="12486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11101" stop="11164"/>
              <exon start="11929" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11102" stop="11164"/>
              <exon start="11929" stop="12606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11103" stop="11164"/>
              <exon start="11929" stop="12345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11128" stop="11164"/>
              <exon start="11929" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11136" stop="11164"/>
              <exon start="11929" stop="12520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11164"/>
              <exon start="11929" stop="12286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11929" stop="12170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11967" stop="12205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11978" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12001" stop="12599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12044" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12111" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12116" stop="12728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12462" stop="12792"/>
              <exon start="12866" stop="13395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12898" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12973" stop="13673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12979" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12982" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13155" stop="13635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13175" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13185" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13194" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13223" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG : CTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : V  Y  S  F  G  C  L  K  L  E  F  G  C  S  D  A  N  D  S  C  A  Y  Q  N  G  S  F  C  L  C  D  V  I  S  F  L  N  F  R  S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q   : A  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </first_frame>
            <second_frame>  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  F  I  H  L  D  A  *  S  W  N  S  G  A  L  M  Q  M  I  R  V  R  T  R  M  A  L  S  A  C  A  M  L  Y  R  S  S  I  S  G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  :  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </second_frame>
            <third_frame>   F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  S :   L  F  I  W  M  L  E  V  G  I  R  V  L  *  C  K  *  F  V  C  V  P  E  W  L  F  L  L  V  R  C  Y  I  V  P  Q  F  Q  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  S :   L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11950" stop="12792"/>
                    <exon start="12866" stop="12901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNSGALMQMIRVRTRMALSACAMLYRSSISGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKLASSLMTQILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12906" PGL_stop="12046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12906" e_stop="12546"/>
            <exon e_start="12269" e_stop="12046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.729" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="12906" e_stop="12546" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.729" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12269" e_stop="12046" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12906" stop="12546"/>
              <exon start="12269" stop="12047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12848" stop="12546"/>
              <exon start="12269" stop="12046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12770" stop="12546"/>
              <exon start="12269" stop="12046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGG : CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</gDNA_template>
            <first_frame> *  S  Y  F  K  I  C  V  I  K  D  D  A  R  C  I  T  A  *  L  K  R  H  L  F  N  G  G  S  S  T  F  H  Q  F  F  P  N  L  G  *  T  C  E  C  N  F  S  Y  L  W  A  C  K  Q  C  V  S  N  I  R  C  I  S  H  N  N  I  H  Y  A  R  W  Y  S  S  L  N  G  E  F  S  C  C  *  S  S  Q  G  C  E  F  R  R  F  N  H  H  C  A  T  T  S  K  S  R  A  N  L  S  G  N  H  S  Q  G  K  I  P  W   : A  K  C  I  I  G  R  R  N  C  I  V  R  L  P  P  S  H  A  W  H  I  C  Y  Y  L  P  C  C  R  I  V  D  L  Y  S  L  P  I  I  C  I  N  P  F  P  S  N  K  S  L  T  P  Q  Q  S  R  A  A  Q  L  S  S  N  T  L  C  V  C  R  H  Q  S  H  W </first_frame>
            <second_frame>  K  A  T  S  R  S  A  S  S  K  M  M  Q  G  A  L  P  P  S  S  R  D  T  F  L  T  V  A  A  A  P  S  I  N  F  F  P  T  L  V  E  P  V  N  V  I  F  L  T  C  G  L  A  S  S  A  S  P  I  S  G  A  F  P  I  T  T  F  T  T  P  G  G  I  P  A  *  M  E  S  S  A  A  A  K  A  V  K  G  V  S  S  D  G  L  I  T  T  V  Q  P  Q  A  R  A  G  P  T  F  R  V  I  I  A  K  G  K  F  H  G  :  L  N  A  S  *  A  E  E  I  A  S  F  V  S  L  P  P  M  H  G  T  S  V  I  T  S  P  V  A  G  L  W  T  F  I  V  F  P  S  Y  A  S  T  H  F  P  P  I  R  A  *  L  R  N  N  P  E  L  L  S  L  A  A  T  L  C  V  S  V  V  I  S  R  T   </second_frame>
            <third_frame>   K  L  L  Q  D  L  R  H  Q  R  *  C  K  V  H  Y  R  L  A  Q  E  T  P  F  *  R  W  Q  Q  H  L  P  S  I  F  S  Q  P  W  L  N  L  *  M  *  F  F  L  P  V  G  L  Q  A  V  R  L  Q  Y  Q  V  H  F  P  *  Q  H  S  L  R  P  V  V  F  Q  L  E  W  R  V  Q  L  L  L  K  Q  S  R  V  *  V  Q  T  V  *  S  P  L  C  N  H  K  Q  E  Q  G  Q  P  F  G  *  S  *  P  R  E  N  S  M  G :   *  M  H  H  R  Q  K  K  L  H  R  S  S  P  S  L  P  C  M  A  H  L  L  L  P  P  L  L  Q  D  C  G  P  L  *  S  S  H  H  M  H  Q  P  I  S  L  Q  *  E  P  D  S  A  T  I  Q  S  C  S  A  *  Q  Q  H  F  V  C  L  S  S  S  V  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12651" stop="12546"/>
                    <exon start="12269" stop="12046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQGCEFRRFNHHCATTSKSRANLSGNHSQGKIPWAKCIIGRRNCIVRLPPSHAWHICYYLPCCRIVDLYSLPIICINPFPSNKSLTPQQSRAAQLSSNTLCVCRHQSHW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12905" stop="12675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KATSRSASSKMMQGALPPSSRDTFLTVAAAPSINFFPTLVEPVNVIFLTCGLASSASPISGAFPITTFTTPGGIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="13634" PGL_stop="12914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13634" e_stop="12914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="13634" e_stop="12914" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13634" stop="12914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13633" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTAACAACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACAAGGACTTTGGCTCCCTTTGAAGTAGCTTCATCCACAAAATATTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTTGCTCTACACCTTCAGTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTAGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCACATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCGAGAG</gDNA_template>
            <first_frame> I  H  K  D  V  K  N  F  I  K  P  K  M  R  L  A  P  L  C  L  L  L  L  R  N  F  F  F  T  V  V  I  *  L  I  L  P  K  H  T  Y  F  I  S  K  Y  S  S  I  P  Y  L  E  P  S  R  P  R  P  D  C  F  T  P  P  N  G  A  T  S  V  E  T  S  P  S  L  T  P  T  I  P  Y  S  R  A  S  V  T  R  Q  A  L  L  M  F  V  E  N  I  *  A  A  K  P  A  L  V  S  L  A  I  W  I  A  S  S  S  V  L  N  F  K  R  G  A  T  G  P  N  T  S  S  F  A  K  S  I  S  L  L  T  P  V  T  T  V  G  S  *  K  V  M  P  R  L  C  L  F  P  P  T  R  T  L  A  P  F  E  V  A  S  S  T  K  Y  S  T  F  C  T  A  A  S  L  I  R  G  P  C  S  T  P  S  V  K  P  S  P  T  F  M  F  W  T  A  L  A  K  A  F  A  N  L  S  Y  I  P  S  C  T  S  I  L  F  A  H  T  H  V  C  P  V  L  R  N  F  V  A  R  </first_frame>
            <second_frame>  F  I  K  T  *  K  T  S  L  N  P  K  *  D  W  H  H  C  V  S  Y  Y  *  E  I  F  F  L  Q  W  *  F  S  S  Y  F  P  S  T  H  I  S  S  L  N  I  H  P  S  R  I  *  N  L  R  G  Q  D  L  I  V  S  H  P  Q  M  E  L  P  R  L  K  L  V  L  H  *  L  R  Q  F  H  I  R  E  L  Q  *  H  A  K  L  F  *  C  L  L  R  I  Y  K  Q  L  N  Q  H  *  C  R  *  P  F  G  L  L  L  R  L  F  *  T  S  K  E  G  R  L  A  Q  I  L  P  L  S  P  R  A  S  H  C  *  L  Q  *  Q  L  *  A  R  R  K  S  C  Q  G  C  V  S  S  H  Q  Q  G  L  W  L  P  L  K  *  L  H  P  Q  N  I  Q  P  S  V  L  L  L  H  *  L  E  G  L  A  L  H  L  Q  *  N  H  L  Q  L  S  C  F  G  Q  L  *  Q  K  H  L  R  I  Y  H  I  S  L  L  A  Q  V  F  C  S  H  I  H  M  F  V  R  C  Y  G  T  L  L  R  E </second_frame>
            <third_frame>   S  *  R  R  E  K  L  H  *  T  Q  N  E  T  G  T  I  V  S  L  I  I  E  K  F  F  F  Y  S  G  D  L  A  H  T  S  Q  A  H  I  F  H  L  *  I  F  I  H  P  V  F  R  T  F  A  A  K  T  *  L  F  H  T  P  K  W  S  Y  L  G  *  N  *  S  F  I  N  S  D  N  S  I  F  E  S  F  S  N  T  P  S  S  F  D  V  C  *  E  Y  I  S  S  *  T  S  I  S  V  V  S  H  L  D  C  F  F  V  C  F  E  L  Q  K  R  G  D  W  P  K  Y  F  L  F  R  Q  E  H  L  T  V  N  S  S  N  N  C  R  L  V  E  S  H  A  K  A  V  S  L  P  T  N  K  D  F  G  S  L  *  S  S  F  I  H  K  I  F  N  L  L  Y  C  C  F  I  D  *  R  A  L  L  Y  T  F  S  E  T  I  S  N  F  H  V  L  D  S  F  S  K  S  I  C  E  F  I  I  Y  P  F  L  H  K  Y  S  V  R  T  Y  T  C  L  S  G  V  T  E  L  C  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13184" stop="12915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMPRLCLFPPTRTLAPFEVASSTKYSTFCTAASLIRGPCSTPSVKPSPTFMFWTALAKAFANLSYIPSCTSILFAHTHVCPVLRNFVAR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13535" stop="13332"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILPKHTYFISKYSSIPYLEPSRPRPDCFTPPNGATSVETSPSLTPTIPYSRASVTRQALLMFVENI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13323" stop="13129"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSISVVSHLDCFFVCFELQKRGDWPKYFLFRQEHLTVNSSNNCRLVESHAKAVSLPTNKDFGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="14342" PGL_stop="17260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14342" e_stop="14575"/>
            <exon e_start="14671" e_stop="14899"/>
            <exon e_start="15433" e_stop="15585"/>
            <exon e_start="16545" e_stop="17260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.287" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14342" e_stop="14575" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14671" e_stop="14899" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15433" e_stop="15585" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.287" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15586" i_stop="16544" i_length="959"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16545" e_stop="17260" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14342" stop="14575"/>
              <exon start="14671" stop="14899"/>
              <exon start="15433" stop="15585"/>
              <exon start="16545" stop="16741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14343" stop="14575"/>
              <exon start="14671" stop="14899"/>
              <exon start="15433" stop="15472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14469" stop="14575"/>
              <exon start="14671" stop="14899"/>
              <exon start="15433" stop="15541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16624" stop="17244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16834" stop="17260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16840" stop="17260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16842" stop="17260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16869" stop="17244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA : GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT : ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG : GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</gDNA_template>
            <first_frame> L  E  R  V  F  G  G  N  M  L  K  L  P  K  R  N  L  P  W  L  Q  L  R  R  L  S  T  A  I  R  Q  T  V  E  D  E  G  D  W  F  Y  S  S  E  W  W  G  T  T  S  G  G  G  D  T  V  F  R  S  I  S  D  K  G  N  G  V  V  S  V  V  A  Y  P  S  S  K  P  :  E  N  C  Y  W  G  K  T  E  N  W  L  Q  K  R  Y  E  K  M  Y  P  R  D  E  Q  E  G  N  F  R  I  L  G  Y  Q  W  R  N  L  H  F  N  E  E  T  R  Q  S  T  V  K  I  M  A  A  Y  R  D  S  A  P  G  S  I  Y  L  M  Q  Q  A  E  C  L  A  V  P   : Y  V  K  S  M  V  S  A  G  L  A  T  I  A  S  C  R  F  D  L  E  S  A  V  C  G  R  K  P  M  K  I  L  C  I  G  H  G  G  G  S  I  P  L  F  L  A  S  K  I  Q   : G  A  E  V  H  I  A  E  I  D  P  V  V  I  S  A  S  V  Q  A  M  G  F  P  S  Y  S  V  M  T  P  S  G  S  R  A  H  S  T  P  D  L  I  Q  E  V  Q  W  K  G  I  H  E  R  I  Q  L  H  E  S  D  A  E  K  F  L  L  E  N  K  N  L  Y  D  L  V  F  I  D  A  Y  D  G  E  D  I  F  P  H  T  L  W  D  P  H  S  P  F  L  N  A  L  A  D  Q  L  H  P  E  H  G  T  V  V  V  N  L  H  S  D  V  D  F  R  D  D  D  F  I  P  P  G  S  H  L  L  P  M  G  K  Y  I  S  K  V  C  R  S  Y  K  E  A  L  L  G  S  K  S  S  Y  N  G  L  A  Y  V  V  S  V  P  W  V  C  N  T  S  L  V  V  S  R  G  L  E  K  S  N  R  D  M  V  M  R  N  I  M  S  K  S  L  V  V  E  N  T  L  D  L  P  F  S  C  M  Q  Y  L  K  R  G  F  T  L  V  N  *  Y  E  L  K  V  F  C  L  H  F  K  D  V  I </first_frame>
            <second_frame>  *  R  G  F  L  V  E  I  C  *  S  C  L  N  G  I  C  H  G  C  S  *  D  D  Y  Q  R  R  F  D  K  L  *  K  M  K  A  T  G  F  I  H  R  N  G  G  A  Q  L  P  V  V  A  T  Q  F  S  D  Q  F  P  I  K  E  T  A  S  F  L  S  *  L  T  L  L  P  N  Q :   K  T  V  I  G  G  K  Q  R  I  G  F  K  R  G  M  K  R  C  I  Q  E  M  N  R  K  G  I  S  G  F  L  V  T  N  G  G  I  F  T  L  M  R  R  L  V  K  A  Q  L  K  *  W  L  L  I  G  I  Q  L  L  V  L  Y  T  *  C  S  R  Q  S  V  S  L  F  H  :  M  *  R  A  W  S  L  L  G  W  L  P  L  H  L  V  D  S  I  L  K  V  Q  F  V  G  E  N  Q  *  K  F  Y  A  L  G  M  A  E  E  A  Y  R  C  F  W  L  V  K  S  K  :  V  L  K  C  T  *  L  K  S  T  L  W  *  S  Q  P  Q  F  K  Q  W  G  S  H  L  T  Q  L  *  L  H  L  V  A  V  H  T  Q  L  L  I  L  S  K  K  F  N  G  K  A  F  M  R  G  F  N  Y  M  N  Q  M  L  R  N  S  S  S  R  T  K  I  F  M  I  L  F  S  *  T  H  M  T  G  K  I  S  F  L  T  P  Y  G  I  H  T  L  H  S  S  M  L  S  Q  T  N  F  T  L  S  M  E  L  L  S  *  T  F  T  Q  M  *  T  S  G  M  M  I  S  F  H  L  V  L  T  F  C  Q  W  E  S  I  F  R  K  C  A  D  H  I  K  K  L  Y  *  G  V  R  V  P  I  M  V  W  L  M  *  F  L  C  L  G  Y  V  I  H  L  L  L  *  A  E  V  *  R  N  L  I  E  I  W  L  *  G  I  S  C  Q  N  P  *  L  L  R  I  L  L  T  C  H  F  L  V  C  N  I  *  K  E  V  L  L  W  L  I  N  M  N  *  K  Y  F  A  F  T  S  K  T  L   </second_frame>
            <third_frame>   R  E  G  F  W  W  K  Y  V  E  V  A  *  T  E  F  A  M  A  A  A  E  T  I  I  N  G  D  S  T  N  C  R  R  *  R  R  L  V  L  F  I  G  M  V  G  H  N  F  R  W  W  R  H  S  F  P  I  N  F  R  *  R  K  R  R  R  F  C  R  S  L  P  F  F  Q  T   : R  K  L  L  L  G  E  N  R  E  L  A  S  K  E  V  *  K  D  V  S  K  R  *  T  G  R  E  F  Q  D  S  W  L  P  M  A  E  S  S  L  *  *  G  D  S  S  K  H  S  *  N  N  G  C  L  *  G  F  S  S  W  F  Y  I  L  D  A  A  G  R  V  S  R  C  S  I :   C  E  E  H  G  L  C  W  V  G  Y  H  C  I  L  *  I  R  S  *  K  C  S  L  W  E  K  T  N  E  N  F  M  H  W  A  W  R  R  K  H  T  V  V  F  G  *  *  N  P  R :   C  *  S  A  H  S  *  N  R  P  C  G  N  L  S  L  S  S  S  N  G  V  P  I  L  L  S  Y  D  S  I  W  *  P  C  T  L  N  S  *  S  Y  P  R  S  S  M  E  R  H  S  *  E  D  S  I  T  *  I  R  C  *  E  I  P  P  R  E  Q  K  S  L  *  S  C  F  H  R  R  I  *  R  G  R  Y  L  S  S  H  P  M  G  S  T  L  S  I  P  Q  C  S  R  R  P  T  S  P  *  A  W  N  C  C  R  K  P  S  L  R  C  R  L  Q  G  *  *  F  H  S  T  W  F  S  P  F  A  N  G  K  V  Y  F  E  S  V  P  I  I  *  R  S  S  I  R  E  *  E  F  L  *  W  S  G  L  C  S  F  C  A  L  G  M  *  Y  I  S  C  C  E  Q  R  F  R  E  I  *  *  R  Y  G  Y  E  E  Y  H  V  K  I  P  S  C  *  E  Y  S  *  L  A  I  F  L  Y  A  I  S  E  K  R  F  Y  S  G  *  L  I  *  I  K  S  I  L  P  S  L  Q  R  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14342" stop="14575"/>
                    <exon start="14671" stop="14899"/>
                    <exon start="15433" stop="15585"/>
                    <exon start="16545" stop="17218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LERVFGGNMLKLPKRNLPWLQLRRLSTAIRQTVEDEGDWFYSSEWWGTTSGGGDTVFRSISDKGNGVVSVVAYPSSKPENCYWGKTENWLQKRYEKMYPRDEQEGNFRILGYQWRNLHFNEETRQSTVKIMAAYRDSAPGSIYLMQQAECLAVPYVKSMVSAGLATIASCRFDLESAVCGRKPMKILCIGHGGGSIPLFLASKIQGAEVHIAEIDPVVISASVQAMGFPSYSVMTPSGSRAHSTPDLIQEVQWKGIHERIQLHESDAEKFLLENKNLYDLVFIDAYDGEDIFPHTLWDPHSPFLNALADQLHPEHGTVVVNLHSDVDFRDDDFIPPGSHLLPMGKYISKVCRSYKEALLGSKSSYNGLAYVVSVPWVCNTSLVVSRGLEKSNRDMVMRNIMSKSLVVENTLDLPFSCMQYLKRGFTLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="21286" PGL_stop="21607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21286" e_stop="21607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="21286" e_stop="21607" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21286" stop="21607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21286" stop="21590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  L  Y  F  T  A  T  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  G  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  E  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0008K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="26684" PGL_stop="25252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26684" e_stop="26535"/>
            <exon e_start="25982" e_stop="25869"/>
            <exon e_start="25650" e_stop="25252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26684" e_stop="26535" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26534" i_stop="25983" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25982" e_stop="25869" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25868" i_stop="25651" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="25650" e_stop="25252" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26684" stop="26535"/>
              <exon start="25982" stop="25869"/>
              <exon start="25650" stop="25252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26652" stop="26535"/>
              <exon start="25982" stop="25869"/>
              <exon start="25650" stop="25460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG : GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG : ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</gDNA_template>
            <first_frame> S  K  K  L  R  L  N  V  V  A  Q  F  L  A  K  Y  F  F  I  S  A  L  L  V  I  I  I  I  Q  M  G  L  P  Q  N  H  H  H  H  H  L  H  T  G  L  H  L  L  Q  Q  :  G  Q  A  K  T  Q  G  K  Q  W  L  *  Y  *  E  E  Q  Q  E  L  V  F  *  S  F  A  C  S  L  Q  G  T  K  *  R  N  M  M  :  I  I  E  G  I  S  C  V  L  L  L  *  K  A  G  K  S  F  L  *  G  G  F  F  P  C  Q  D  F  L  P  R  R  K  I  Y  F  L  G  N  S  *  K  K  V  R  E  F  V  S  C  N  S  W  N  Y  *  V  K  R  E  K  Q  K  Y  Y  F  G  D  I  N  F  W  R  N  D  V  T  I  H  V  F  F  V  N  Y  E  E  D  W  Q  E  H  Y  N  V  F  L  A  F  F  S  Y  G  H  V  H  V  V  S  F  L  F  V  S  E  *  L  F  H  P  F  F  S  S  S  K  V  F  Y  F  *  K </first_frame>
            <second_frame>  P  K  S  S  G  *  M  W  *  L  N  F  W  P  N  I  S  S  *  V  L  C  *  L  *  L  L  S  K  W  G  S  H  K  I  I  I  I  I  I  F  I  L  V  S  I  S  F  S  R :   D  R  P  K  H  R  E  N  S  G  Y  N  T  R  R  S  S  R  S  W  F  S  S  H  L  H  A  L  C  K  E  P  N  E  E  T  *  * :   L  L  K  G  S  A  V  Y  Y  Y  Y  K  R  L  A  K  A  F  Y  E  V  D  S  F  L  V  K  I  F  Y  L  E  G  K  Y  I  F  L  E  I  P  E  K  K  *  G  S  L  *  A  V  I  L  G  I  I  R  *  K  E  K  N  K  N  T  I  L  G  T  *  I  F  G  E  M  M  *  Q  Y  M  F  F  L  S  T  M  K  K  I  G  K  S  I  I  M  F  F  W  P  F  S  P  M  A  M  C  M  L  Y  L  F  S  L  S  L  N  N  C  F  T  L  F  F  L  L  L  K  F  F  T  F  R   </second_frame>
            <third_frame>   Q  K  A  Q  V  E  C  G  S  S  I  S  G  Q  I  F  L  H  K  C  F  V  S  Y  N  Y  Y  P  N  G  A  P  T  K  S  S  S  S  S  S  S  Y  W  S  P  S  P  S  A   : G  T  G  Q  N  T  G  K  T  V  A  I  I  L  G  G  A  A  G  V  G  F  L  V  I  C  M  L  F  A  R  N  Q  M  K  K  H  D   : D  Y  *  R  D  Q  L  C  I  I  I  I  K  G  W  Q  K  L  F  M  R  W  I  L  S  L  S  R  F  S  T  *  K  E  N  I  F  S  W  K  F  L  K  K  S  E  G  V  C  E  L  *  F  L  E  L  L  G  K  K  R  K  T  K  I  L  F  W  G  H  K  F  L  E  K  *  C  N  N  T  C  F  F  C  Q  L  *  R  R  L  A  R  A  L  *  C  F  F  G  L  F  L  L  W  P  C  A  C  C  I  F  S  L  C  L  *  I  I  V  S  P  F  F  F  F  F  *  S  F  L  L  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26682" stop="26535"/>
                    <exon start="25982" stop="25869"/>
                    <exon start="25650" stop="25643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAQVECGSSISGQIFLHKCFVSYNYYPNGAPTKSSSSSSSYWSPSPSAGTGQNTGKTVAIILGGAAGVGFLVICMLFARNQMKKHDDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="27474" PGL_stop="26709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27474" e_stop="26709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="27474" e_stop="26709" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27474" stop="26901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27241" stop="26709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAAACAACCACCATGTATAGTTTTTCAAGAATCTCTAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATGCATTTTCTTGGCCATTCTAGCCATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTTTCTGTGTTTATTTAGCCATTCTAGCAATTTTCAAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</gDNA_template>
            <first_frame> L  F  P  L  K  I  Y  K  T  A  K  N  N  H  H  V  *  F  F  K  N  L  *  K  M  V  M  G  L  S  K  K  P  F  L  C  I  F  L  A  I  L  A  I  F  K  N  L  P  K  M  G  L  S  K  K  P  F  F  C  I  F  C  V  Y  L  A  I  L  A  I  F  K  N  V  A  P  A  E  S  A  S  G  N  T  N  L  V  Y  K  G  C  A  K  Q  A  L  S  D  P  S  G  V  Y  S  Q  A  L  S  T  L  F  G  T  L  V  S  Q  S  S  K  S  K  F  Y  K  T  T  T  G  T  G  Q  T  T  I  T  G  L  F  Q  C  R  G  D  L  T  N  I  D  C  Y  N  C  V  N  G  L  P  I  L  I  D  K  L  C  G  T  P  V  A  A  R  I  Q  L  L  G  C  Y  M  L  Y  E  V  S  G  F  P  Q  I  S  G  M  E  M  L  Y  K  T  C  S  G  K  N  A  P  G  S  G  F  E  E  K  R  D  T  A  F  S  T  L  E  N  G  M  S  S  A  N  N  G  F  Y  T  S  N  Y  E  S  V  F  V  L  G  Q  C  E  G  D  V  G  S  S  D  </first_frame>
            <second_frame>  F  F  L  S  K  S  T  K  Q  Q  K  T  T  T  M  Y  S  F  S  R  I  S  K  K  W  *  W  G  C  P  R  N  H  F  Y  A  F  S  W  P  F  *  P  F  S  R  I  S  Q  K  W  G  C  P  R  N  H  F  F  A  F  S  V  F  I  *  P  F  *  Q  F  S  R  M  *  H  Q  L  N  L  H  L  E  T  L  I  *  C  T  K  V  V  Q  N  R  H  Y  Q  I  H  L  V  F  T  H  K  P  F  Q  P  F  L  A  L  L  F  H  N  L  Q  N  P  S  S  T  K  L  Q  L  V  L  A  K  L  Q  *  L  V  F  F  S  V  E  V  T  L  L  I  L  I  V  T  T  V  *  M  V  C  Q  Y  *  L  T  S  S  V  A  P  L  L  L  Q  E  S  S  F  *  A  V  T  C  C  M  K  S  Q  A  S  H  K  S  Q  E  W  R  C  C  T  R  L  V  V  E  K  M  H  Q  G  V  D  L  R  R  R  G  I  L  L  F  Q  H  W  K  M  E  C  L  V  L  I  M  D  F  T  L  Q  I  M  S  L  F  L  F  W  D  N  V  K  G  M  *  A  L  L  I </second_frame>
            <third_frame>   F  S  S  Q  N  L  Q  N  S  K  K  Q  P  P  C  I  V  F  Q  E  S  L  K  N  G  N  G  V  V  Q  E  T  I  F  M  H  F  L  G  H  S  S  H  F  Q  E  S  P  K  N  G  V  V  Q  E  T  I  F  L  H  F  L  C  L  F  S  H  S  S  N  F  Q  E  C  S  T  S  *  I  C  I  W  K  H  *  F  S  V  Q  R  L  C  K  T  G  I  I  R  S  I  W  C  L  L  T  S  P  F  N  P  F  W  H  S  C  F  T  I  F  K  I  Q  V  L  Q  N  Y  N  W  Y  W  P  N  Y  N  N  W  S  F  S  V  *  R  *  P  Y  *  Y  *  L  L  Q  L  C  K  W  F  A  N  T  D  *  Q  A  L  W  H  P  C  C  C  K  N  P  A  F  R  L  L  H  A  V  *  S  L  R  L  P  T  N  L  R  N  G  D  V  V  Q  D  L  *  W  K  K  C  T  R  E  W  I  *  G  E  E  G  Y  C  F  F  N  T  G  K  W  N  V  *  C  *  *  W  I  L  H  F  K  L  *  V  C  F  C  F  G  T  M  *  R  G  C  R  L  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27405" stop="26710"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVMGLSKKPFLCIFLAILAIFKNLPKMGLSKKPFFCIFCVYLAILAIFKNVAPAESASGNTNLVYKGCAKQALSDPSGVYSQALSTLFGTLVSQSSKSKFYKTTTGTGQTTITGLFQCRGDLTNIDCYNCVNGLPILIDKLCGTPVAARIQLLGCYMLYEVSGFPQISGMEMLYKTCSGKNAPGSGFEEKRDTAFSTLENGMSSANNGFYTSNYESVFVLGQCEGDVGSSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="32826" PGL_stop="33893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32826" e_stop="33243"/>
            <exon e_start="33341" e_stop="33413"/>
            <exon e_start="33534" e_stop="33614"/>
            <exon e_start="33863" e_stop="33893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.548" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="32826" e_stop="33243" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.548">
            <gDNA_intron_boundary i_start="33244" i_stop="33340" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33341" e_stop="33413" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33414" i_stop="33533" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33534" e_stop="33614" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33615" i_stop="33862" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33863" e_stop="33893" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32826" stop="33243"/>
              <exon start="33341" stop="33413"/>
              <exon start="33534" stop="33539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32907" stop="33243"/>
              <exon start="33341" stop="33413"/>
              <exon start="33534" stop="33614"/>
              <exon start="33863" stop="33893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32907" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG : TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG : ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA : GGAACAAATCAATCATTTGTATTCACAACTC</gDNA_template>
            <first_frame> H  I  L  *  M  *  E  I  E  E  R  S  N  H  F  N  Q  I  L  L  R  G  E  V  K  V  S  R  C  A  I  N  L  W  M  S  L  R  F  T  M  I  I  K  R  Y  Q  I  F  I  Q  K  K  V  K  M  V  P  S  G  V  Q  S  V  *  R  R  R  *  M  Q  T  T  I  M  E  S  L  L  L  L  G  A  L  P  A  V  L  K  L  L  K  M  L  L  I  D  T  A  L  S  S  H  W  P  I  S  L  L  I  L  F  S  L  L  Q  I  C  M  I  F  S  S  L  P  F  L  I  *  *  K  V  V  N  G  S  C  Y  I   : V  R  P  D  T  V  Y  H  S  A  L  L  F  A  R  V  L  I  F  L  V  L  A  C  * :   L  L  V  I  R  R  V  L  C  L  V  G  C  S  R  H  R  *  S  L  L  Q  R  G  N  T  K :   E  Q  I  N  H  L  Y  S  Q  L </first_frame>
            <second_frame>  I  F  C  E  C  K  R  S  K  R  G  Q  T  T  S  I  K  F  F  Y  V  E  K  *  K  F  L  V  A  R  *  T  S  G  *  V  *  G  S  Q  *  L  *  R  D  T  R  Y  S  S  R  R  R  *  K  W  F  H  Q  E  F  S  L  C  E  G  D  G  K  C  R  Q  R  *  W  R  A  Y  F  C  W  E  H  C  Q  R  F  *  N  F  *  R  C  S  *  *  T  Q  L  *  A  V  T  G  L  S  H  Y  *  F  C  F  H  Y  S  K  F  V  *  F  F  P  V  F  P  S  *  Y  S  E  R  L  S  M  G  L  V  I  *  :  Y  G  Q  T  R  Y  I  T  P  H  S  Y  S  Q  E  C  *  Y  F  W  S  L  L  A   : D  Y  W  *  *  E  G  C  C  V  W  W  V  A  R  G  T  V  K  A  Y  C  K  E  E  I  P   : R  N  K  S  I  I  C  I  H  N   </second_frame>
            <third_frame>   Y  F  V  N  V  R  D  R  R  E  V  K  P  L  Q  S  N  S  F  T  W  R  S  K  S  F  S  L  R  D  K  P  L  D  E  F  E  V  H  N  D  Y  K  E  I  P  D  I  H  P  E  E  G  E  N  G  S  I  R  S  S  V  C  V  K  E  T  V  N  A  D  N  D  N  G  E  P  T  S  A  G  S  I  A  S  G  S  E  T  F  E  D  A  P  D  R  H  S  F  E  Q  S  L  A  Y  L  T  T  D  S  V  F  I  T  P  N  L  Y  D  F  F  Q  S  S  L  P  N  I  V  K  G  C  Q  W  V  L  L  Y  S :   T  A  R  H  G  I  S  L  R  T  L  I  R  K  S  A  D  I  S  G  P  C  L  L  :  I  T  G  D  K  K  G  A  V  F  G  G  L  L  E  A  P  L  K  P  T  A  K  R  K  Y  Q  :  G  T  N  Q  S  F  V  F  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32828" stop="33243"/>
                    <exon start="33341" stop="33413"/>
                    <exon start="33534" stop="33614"/>
                    <exon start="33863" stop="33892"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVNVRDRREVKPLQSNSFTWRSKSFSLRDKPLDEFEVHNDYKEIPDIHPEEGENGSIRSSVCVKETVNADNDNGEPTSAGSIASGSETFEDAPDRHSFEQSLAYLTTDSVFITPNLYDFFQSSLPNIVKGCQWVLLYSTARHGISLRTLIRKSADISGPCLLITGDKKGAVFGGLLEAPLKPTAKRKYQGTNQSFVFTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="43789" PGL_stop="35543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43789" e_stop="43685"/>
            <exon e_start="43557" e_stop="43472"/>
            <exon e_start="42716" e_stop="42645"/>
            <exon e_start="42526" e_stop="42464"/>
            <exon e_start="42186" e_stop="42100"/>
            <exon e_start="41196" e_stop="41055"/>
            <exon e_start="40966" e_stop="40845"/>
            <exon e_start="40661" e_stop="40545"/>
            <exon e_start="39878" e_stop="39783"/>
            <exon e_start="39645" e_stop="39586"/>
            <exon e_start="39022" e_stop="38948"/>
            <exon e_start="38097" e_stop="37993"/>
            <exon e_start="37877" e_stop="37761"/>
            <exon e_start="37653" e_stop="37576"/>
            <exon e_start="37467" e_stop="37371"/>
            <exon e_start="36859" e_stop="36808"/>
            <exon e_start="36275" e_stop="36205"/>
            <exon e_start="36116" e_stop="35543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.982" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36089" stop="35853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36057" stop="35545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36055" stop="35643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35916" stop="35643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA : TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT : GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG : ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA : GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG : CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG : TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG : ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG : GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG : GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG : ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG : GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG : GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG : GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA : ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG : TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG : AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG : GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</gDNA_template>
            <first_frame> S  F  I  S  L  A  L  T  L  H  Q  L  L  L  C  C  L  N  P  S  S  T  S  L  P  F  S  L  F  Q  Q  *  T  V  Q  :  F  P  A  R  C  R  R  I  Q  *  F  R  R  S  P  D  S  F  S  R  S  V  *  L  K  D  I  S  L :   I  M  A  N  V  L  L  L  E  S  H  *  R  Q  M  T  S  S  L  L  K  L  A  R :   *  L  N  P  D  L  Y  R  L  L  A  F  L  G  C  W  E  C  S  K  * :   N  G  M  V  *  C  C  Q  I  L  H  W  N  N  N  C  I  L  Q  G  K  S  *  A  M  L  Y  I  S :   M  M  L  L  A  G  *  L  Q  G  *  K  R  K  G  M  R  Q  G  G  Y  L  P  R  L  K  D  K  Y  P  W  Q  P  L  Q  Q  L  A  L  L  L  *  A  T  G  K  E  :  L  P  R  M  R  M  W  A  L  M  E  R  K  F  A  L  G  Y  H  T  L  S  L  R  L  L  L  N  V  M  L  V  F  H  N  K  G  K  N  D  R :   Y  P  Q  H  W  P  L  W  M  L  W  R  D  I  P  N  *  I  V  F  P  F  T  K  P  T  S  R  A  F  C  L  W  I  F  T  M  L  R :   T  *  L  L  L  V  E  S  I  Q  T  L  W  S  L  I  D  L  Q  D  R  S  Y  Q  H  *  V  V  I  Q  R  G :   L  P  V  L  N  L  R  L  R  V  N  *  W  S  L  V  Q  Q  I  R :   Q  F  V  C  G  K  V  P  K  M  E  I  M  T  V  G  M  S  *  R  I  I  L  Q  R :   C  K  L  S  L  S  M  Q  P  I  I  I  L  L  L  L  L  L  I  A  R  G  A  F  M  I  L  L  L  V  Y  A  L  H  R :   *  Q  M  L  Q  N  L  R  A  I  L  L  Q  L  S  T  L  M  V  *  S  L  E  Q  G  L  Q  G  L  W  S  R  Y  G  M  *  K  V  R :   Q  M  L  Q  N  L  M  A  M  L  G  L  *  L  P  F  P  F  Q  K  M  V  I  S  *  Q :   L  L  L  M  M  V  L  N  F  G  I  Y  A  N  *  R  T  S  K  L  S  L  L  T  M  I  T  H  Q  L  N  Q  :  W  N  L  T  I  V  E  V  I  L  P  *  E  A  Q  I  Y   : E  F  I  K  S  P  A  S  R  L  N  G  I  P  S  K  P  S  P  T  Y  Q  A  Q  :  A  K  Q  H  V  *  N  L  V  Q  M  Q  H  I  *  L  S  D  L  W  T  V  I  *  E  Y  S  G  C  L  V  R  I  K  W  R  I  R  L  I  S  S  V  K  A  N  S  F  F  L  C  I  C  C  K  I  T  V  L  S  R  G  *  E  V  D  E  S  P  V  L  *  Y  V  L  L  V  F  A  K  F  W  G  W  A  S  *  *  T  *  P  Q  T  *  D  N  I  *  S  A  E  F  I  R  S  S  Q  N  Q  P  W  V  I  S  I  L  L  Y  H  S  C  V  T  I  L  P  F  L  E  A  K  L  *  M  D  S  D  Q  L  Q  Y  I  D  I  S  C  L  V  I  V  D  I  K  C  T  L  Y  A  I  I  F  F  H  V  Q  E  L  I  *  I  H  C  C  V  H  H  E  R  L  K  V  K  I  V  N  L  T  C  S  L  L  </first_frame>
            <second_frame>  H  S  S  P  S  L  S  L  C  I  S  S  F  C  A  A  *  T  L  A  L  P  L  C  L  S  L  S  F  N  N  E  L  F  N :   F  R  R  G  A  G  G  S  S  S  F  E  E  V  R  T  P  F  R  E  A  F  N  *  K  T  Y  L   : *  L  W  Q  M  S  Y  Y  W  R  A  I  D  G  R  *  H  H  P  C  *  N  W  Q   : D  S  *  T  P  T  C  T  G  C  *  H  S  W  D  V  G  N  V  P  N   : R  M  G  W  S  D  A  V  K  F  C  I  G  T  T  I  A  Y  C  K  A  R  A  E  P  C  F  I  S   : A  *  C  C  L  Q  G  N  C  K  A  E  K  G  K  G  *  G  K  G  V  T  C  P  G  *  K  T  N  T  H  G  S  H  Y  S  S  W  H  Y  C  C  K  Q  R  E  K  S :   C  R  G  *  G  C  G  P  *  W  K  E  N  S  P  W  D  I  T  L  C  H  *  D  S  Y  *  M  *  C  W  S  F  T  T  K  E  K  T  T   : D  T  R  N  I  G  P  C  G  C  C  G  E  I  Y  P  T  E  *  F  S  P  S  Q  N  Q  Q  A  G  H  F  V  S  G  Y  S  L  C  *   : G  H  N  C  Y  W  W  S  R  F  K  R  C  G  L  *  S  T  F  R  T  D  H  I  N  T  K  W  S  F  K  E   : G  Y  Q  C  *  I  C  G  *  G  *  T  S  G  L  W  F  S  R  *   : D  S  S  C  V  A  K  F  R  K  W  K  L  *  L  *  A  C  L  E  G  S  Y  C  R   : G  A  S  C  H  C  P  C  N  Q  *  L  F  C  Y  C  F  S  *  *  H  V  V  L  L  *  S  C  F  W  F  M  P  Y  T   : G  S  R  C  F  R  I  *  G  L  Y  F  C  S  F  P  P  *  W  S  D  P  W  N  R  D  F  R  V  F  G  Q  D  M  G  C  K  K  S   : G  K  C  C  K  I  *  W  P  C  W  V  C  N  C  H  F  L  F  R  K  W  L  F  L  S   : N  C  C  S  *  W  C  *  T  L  G  F  T  Q  I  E  E  L  Q  N  F  R  S  L  R  *  *  H  T  N  S  I  S :   G  I  *  P  *  W  K  L  S  C  L  R  R  L  R  Y  T  :  S  L  S  S  R  Q  R  Q  G  *  M  E  F  H  Q  N  L  P  R  L  I  R  H  R :   Q  S  N  M  S  E  I  W  S  R  C  S  I  Y  S  C  R  I  Y  G  P  *  S  K  N  I  R  A  A  W  *  G  S  N  G  G  L  G  S  F  P  A  L  K  Q  T  A  F  S  F  A  S  A  A  R  S  Q  C  Y  L  E  G  R  R  S  M  R  V  L  F  F  N  M  Y  F  W  F  L  L  N  F  G  G  G  Q  A  N  R  H  N  H  K  L  E  I  T  S  E  V  Q  S  L  F  G  H  P  K  T  S  L  G  L  L  V  F  C  C  I  I  L  V  *  P  Y  C  P  S  W  K  Q  N  S  E  W  I  V  I  S  Y  S  T  S  I  F  H  V  *  L  *  S  I  *  N  A  L  C  T  L  L  F  F  F  M  F  K  S  *  S  E  F  I  V  V  Y  I  M  K  G  S  K  *  K  *  *  I  *  L  V  V  C  Y </second_frame>
            <third_frame>   I  H  L  P  R  S  H  S  A  S  A  P  F  V  L  L  K  P  *  L  Y  L  F  A  F  L  S  L  S  T  M  N  C  S   : I  S  G  E  V  P  E  D  P  V  V  S  K  K  S  G  L  L  F  E  K  R  L  I  E  R  H  I  S  :  D  Y  G  K  C  P  I  T  G  E  P  L  T  A  D  D  I  I  P  V  K  T  G  K  :  I  V  K  P  R  P  V  Q  A  A  S  I  P  G  M  L  G  M  F  Q  I  :  E  W  D  G  L  M  L  S  N  F  A  L  E  Q  Q  L  H  T  A  R  Q  E  L  S  H  A  L  Y  Q  :  H  D  A  A  C  R  V  I  A  R  L  K  K  E  R  D  E  A  R  G  L  L  A  Q  A  E  R  Q  I  P  M  A  A  T  T  A  V  G  T  T  A  V  S  N  G  K  R   : V  A  E  D  E  D  V  G  P  D  G  K  K  I  R  P  G  I  S  H  S  V  I  E  T  L  T  E  C  N  A  G  L  S  Q  Q  R  K  K  R  Q  :  I  P  A  T  L  A  P  V  D  A  V  A  R  Y  T  Q  L  N  S  F  P  L  H  K  T  N  K  P  G  I  L  S  L  D  I  H  Y  A  K  :  D  I  I  A  T  G  G  V  D  S  N  A  V  V  F  D  R  P  S  G  Q  I  I  S  T  L  S  G  H  S  K  R  :  V  T  S  V  K  F  A  A  E  G  E  L  V  V  S  G  S  A  D  K  :  T  V  R  V  W  Q  S  S  E  N  G  N  Y  D  C  R  H  V  L  K  D  H  T  A  E  :  V  Q  A  V  T  V  H  A  T  N  N  Y  F  V  T  A  S  L  D  S  T  W  C  F  Y  D  L  A  S  G  L  C  L  T  Q  :  V  A  D  A  S  E  S  E  G  Y  T  S  A  A  F  H  P  D  G  L  I  L  G  T  G  T  S  G  S  L  V  K  I  W  D  V  K  S  Q  :  A  N  V  A  K  F  D  G  H  V  G  S  V  T  A  I  S  F  S  E  N  G  Y  F  L  A  :  T  A  A  H  D  G  V  K  L  W  D  L  R  K  L  K  N  F  K  T  F  A  P  Y  D  D  N  T  P  T  Q  S   : V  E  F  D  H  S  G  S  Y  L  A  L  G  G  S  D  I  R :   V  Y  Q  V  A  S  V  K  A  E  W  N  S  I  K  T  F  P  D  L  S  G  T   : G  K  A  T  C  L  K  F  G  P  D  A  A  Y  I  A  V  G  S  M  D  R  N  L  R  I  F  G  L  P  G  E  D  Q  M  E  D  *  A  H  F  Q  R  *  S  K  Q  L  F  P  L  H  L  L  Q  D  H  S  A  I  S  R  V  G  G  R  *  E  S  C  S  L  I  C  T  S  G  F  C  *  I  L  G  V  G  K  L  I  D  I  T  T  N  L  R  *  H  L  K  C  R  V  Y  S  V  I  P  K  P  A  L  G  Y  *  Y  S  V  V  S  F  L  C  N  H  I  A  L  P  G  S  K  T  L  N  G  *  *  S  V  T  V  H  R  Y  F  M  F  S  Y  S  R  Y  K  M  H  F  V  R  Y  Y  F  F  S  C  S  R  V  D  L  N  S  L  L  C  T  S  *  K  A  Q  S  K  N  S  K  F  N  L  *  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43730" stop="43685"/>
                    <exon start="43557" stop="43472"/>
                    <exon start="42716" stop="42645"/>
                    <exon start="42526" stop="42464"/>
                    <exon start="42186" stop="42100"/>
                    <exon start="41196" stop="41055"/>
                    <exon start="40966" stop="40845"/>
                    <exon start="40661" stop="40545"/>
                    <exon start="39878" stop="39783"/>
                    <exon start="39645" stop="39586"/>
                    <exon start="39022" stop="38948"/>
                    <exon start="38097" stop="37993"/>
                    <exon start="37877" stop="37761"/>
                    <exon start="37653" stop="37576"/>
                    <exon start="37467" stop="37371"/>
                    <exon start="36859" stop="36808"/>
                    <exon start="36275" stop="36205"/>
                    <exon start="36116" stop="36004"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLFAFLSLSTMNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARGLLAQAERQIPMAATTAVGTTAVSNGKRVAEDEDVGPDGKKIRPGISHSVIETLTECNAGLSQQRKKRQIPATLAPVDAVARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATGGVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYDCRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAAFHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFKTFAPYDDNTPTQSVEFDHSGSYLALGGSDIRVYQVASVKAEWNSIKTFPDLSGTGKATCLKFGPDAAYIAVGSMDRNLRIFGLPGEDQMED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36022" stop="35750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNGGLGSFPALKQTAFSFASAARSQCYLEGRRSMRVLFFNMYFWFLLNFGGGQANRHNHKLEITSEVQSLFGHPKTSLGLLVFCCIILV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43789" e_stop="43685"/>
            <exon e_start="43557" e_stop="43472"/>
            <exon e_start="42716" e_stop="42645"/>
            <exon e_start="42526" e_stop="42464"/>
            <exon e_start="42186" e_stop="42100"/>
            <exon e_start="41196" e_stop="41055"/>
            <exon e_start="40966" e_stop="40845"/>
            <exon e_start="40661" e_stop="40545"/>
            <exon e_start="39878" e_stop="39783"/>
            <exon e_start="39645" e_stop="39586"/>
            <exon e_start="39022" e_stop="38948"/>
            <exon e_start="38097" e_stop="37993"/>
            <exon e_start="37877" e_stop="37761"/>
            <exon e_start="37653" e_stop="37576"/>
            <exon e_start="37467" e_stop="37371"/>
            <exon e_start="36859" e_stop="36808"/>
            <exon e_start="36697" e_stop="36691"/>
            <exon e_start="36275" e_stop="36205"/>
            <exon e_start="36116" e_stop="35543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.660" acc_prob="0.994" e_score="0.571"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43789" e_stop="43685" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
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          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA : TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT : GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG : ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA : GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG : CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG : TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG : ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG : GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG : GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG : ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG : GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG : GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG : GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA : ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG : TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG : ATTTTTG : AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG : GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</gDNA_template>
            <first_frame> S  F  I  S  L  A  L  T  L  H  Q  L  L  L  C  C  L  N  P  S  S  T  S  L  P  F  S  L  F  Q  Q  *  T  V  Q  :  F  P  A  R  C  R  R  I  Q  *  F  R  R  S  P  D  S  F  S  R  S  V  *  L  K  D  I  S  L :   I  M  A  N  V  L  L  L  E  S  H  *  R  Q  M  T  S  S  L  L  K  L  A  R :   *  L  N  P  D  L  Y  R  L  L  A  F  L  G  C  W  E  C  S  K  * :   N  G  M  V  *  C  C  Q  I  L  H  W  N  N  N  C  I  L  Q  G  K  S  *  A  M  L  Y  I  S :   M  M  L  L  A  G  *  L  Q  G  *  K  R  K  G  M  R  Q  G  G  Y  L  P  R  L  K  D  K  Y  P  W  Q  P  L  Q  Q  L  A  L  L  L  *  A  T  G  K  E  :  L  P  R  M  R  M  W  A  L  M  E  R  K  F  A  L  G  Y  H  T  L  S  L  R  L  L  L  N  V  M  L  V  F  H  N  K  G  K  N  D  R :   Y  P  Q  H  W  P  L  W  M  L  W  R  D  I  P  N  *  I  V  F  P  F  T  K  P  T  S  R  A  F  C  L  W  I  F  T  M  L  R :   T  *  L  L  L  V  E  S  I  Q  T  L  W  S  L  I  D  L  Q  D  R  S  Y  Q  H  *  V  V  I  Q  R  G :   L  P  V  L  N  L  R  L  R  V  N  *  W  S  L  V  Q  Q  I  R :   Q  F  V  C  G  K  V  P  K  M  E  I  M  T  V  G  M  S  *  R  I  I  L  Q  R :   C  K  L  S  L  S  M  Q  P  I  I  I  L  L  L  L  L  L  I  A  R  G  A  F  M  I  L  L  L  V  Y  A  L  H  R :   *  Q  M  L  Q  N  L  R  A  I  L  L  Q  L  S  T  L  M  V  *  S  L  E  Q  G  L  Q  G  L  W  S  R  Y  G  M  *  K  V  R :   Q  M  L  Q  N  L  M  A  M  L  G  L  *  L  P  F  P  F  Q  K  M  V  I  S  *  Q :   L  L  L  M  M  V  L  N  F  G  I  Y  A  N  *  R  T  S  K  L  S  L  L  T  M  I  T  H  Q  L  N  Q  :  W  N  L  T  I  V  E  V  I  L  P  *  E  A  Q  I  Y   : D  F  * :   V  Y  Q  V  A  S  V  K  A  E  W  N  S  I  K  T  F  P  D  L  S  G  T   : G  K  A  T  C  L  K  F  G  P  D  A  A  Y  I  A  V  G  S  M  D  R  N  L  R  I  F  G  L  P  G  E  D  Q  M  E  D  *  A  H  F  Q  R  *  S  K  Q  L  F  P  L  H  L  L  Q  D  H  S  A  I  S  R  V  G  G  R  *  E  S  C  S  L  I  C  T  S  G  F  C  *  I  L  G  V  G  K  L  I  D  I  T  T  N  L  R  *  H  L  K  C  R  V  Y  S  V  I  P  K  P  A  L  G  Y  *  Y  S  V  V  S  F  L  C  N  H  I  A  L  P  G  S  K  T  L  N  G  *  *  S  V  T  V  H  R  Y  F  M  F  S  Y  S  R  Y  K  M  H  F  V  R  Y  Y  F  F  S  C  S  R  V  D  L  N  S  L  L  C  T  S  *  K  A  Q  S  K  N  S  K  F  N  L  *  F  A   </first_frame>
            <second_frame>  H  S  S  P  S  L  S  L  C  I  S  S  F  C  A  A  *  T  L  A  L  P  L  C  L  S  L  S  F  N  N  E  L  F  N :   F  R  R  G  A  G  G  S  S  S  F  E  E  V  R  T  P  F  R  E  A  F  N  *  K  T  Y  L   : *  L  W  Q  M  S  Y  Y  W  R  A  I  D  G  R  *  H  H  P  C  *  N  W  Q   : D  S  *  T  P  T  C  T  G  C  *  H  S  W  D  V  G  N  V  P  N   : R  M  G  W  S  D  A  V  K  F  C  I  G  T  T  I  A  Y  C  K  A  R  A  E  P  C  F  I  S   : A  *  C  C  L  Q  G  N  C  K  A  E  K  G  K  G  *  G  K  G  V  T  C  P  G  *  K  T  N  T  H  G  S  H  Y  S  S  W  H  Y  C  C  K  Q  R  E  K  S :   C  R  G  *  G  C  G  P  *  W  K  E  N  S  P  W  D  I  T  L  C  H  *  D  S  Y  *  M  *  C  W  S  F  T  T  K  E  K  T  T   : D  T  R  N  I  G  P  C  G  C  C  G  E  I  Y  P  T  E  *  F  S  P  S  Q  N  Q  Q  A  G  H  F  V  S  G  Y  S  L  C  *   : G  H  N  C  Y  W  W  S  R  F  K  R  C  G  L  *  S  T  F  R  T  D  H  I  N  T  K  W  S  F  K  E   : G  Y  Q  C  *  I  C  G  *  G  *  T  S  G  L  W  F  S  R  *   : D  S  S  C  V  A  K  F  R  K  W  K  L  *  L  *  A  C  L  E  G  S  Y  C  R   : G  A  S  C  H  C  P  C  N  Q  *  L  F  C  Y  C  F  S  *  *  H  V  V  L  L  *  S  C  F  W  F  M  P  Y  T   : G  S  R  C  F  R  I  *  G  L  Y  F  C  S  F  P  P  *  W  S  D  P  W  N  R  D  F  R  V  F  G  Q  D  M  G  C  K  K  S   : G  K  C  C  K  I  *  W  P  C  W  V  C  N  C  H  F  L  F  R  K  W  L  F  L  S   : N  C  C  S  *  W  C  *  T  L  G  F  T  Q  I  E  E  L  Q  N  F  R  S  L  R  *  *  H  T  N  S  I  S :   G  I  *  P  *  W  K  L  S  C  L  R  R  L  R  Y  T  :  I  F   : E  F  I  K  S  P  A  S  R  L  N  G  I  P  S  K  P  S  P  T  Y  Q  A  Q  :  A  K  Q  H  V  *  N  L  V  Q  M  Q  H  I  *  L  S  D  L  W  T  V  I  *  E  Y  S  G  C  L  V  R  I  K  W  R  I  R  L  I  S  S  V  K  A  N  S  F  F  L  C  I  C  C  K  I  T  V  L  S  R  G  *  E  V  D  E  S  P  V  L  *  Y  V  L  L  V  F  A  K  F  W  G  W  A  S  *  *  T  *  P  Q  T  *  D  N  I  *  S  A  E  F  I  R  S  S  Q  N  Q  P  W  V  I  S  I  L  L  Y  H  S  C  V  T  I  L  P  F  L  E  A  K  L  *  M  D  S  D  Q  L  Q  Y  I  D  I  S  C  L  V  I  V  D  I  K  C  T  L  Y  A  I  I  F  F  H  V  Q  E  L  I  *  I  H  C  C  V  H  H  E  R  L  K  V  K  I  V  N  L  T  C  S  L  L  </second_frame>
            <third_frame>   I  H  L  P  R  S  H  S  A  S  A  P  F  V  L  L  K  P  *  L  Y  L  F  A  F  L  S  L  S  T  M  N  C  S   : I  S  G  E  V  P  E  D  P  V  V  S  K  K  S  G  L  L  F  E  K  R  L  I  E  R  H  I  S  :  D  Y  G  K  C  P  I  T  G  E  P  L  T  A  D  D  I  I  P  V  K  T  G  K  :  I  V  K  P  R  P  V  Q  A  A  S  I  P  G  M  L  G  M  F  Q  I  :  E  W  D  G  L  M  L  S  N  F  A  L  E  Q  Q  L  H  T  A  R  Q  E  L  S  H  A  L  Y  Q  :  H  D  A  A  C  R  V  I  A  R  L  K  K  E  R  D  E  A  R  G  L  L  A  Q  A  E  R  Q  I  P  M  A  A  T  T  A  V  G  T  T  A  V  S  N  G  K  R   : V  A  E  D  E  D  V  G  P  D  G  K  K  I  R  P  G  I  S  H  S  V  I  E  T  L  T  E  C  N  A  G  L  S  Q  Q  R  K  K  R  Q  :  I  P  A  T  L  A  P  V  D  A  V  A  R  Y  T  Q  L  N  S  F  P  L  H  K  T  N  K  P  G  I  L  S  L  D  I  H  Y  A  K  :  D  I  I  A  T  G  G  V  D  S  N  A  V  V  F  D  R  P  S  G  Q  I  I  S  T  L  S  G  H  S  K  R  :  V  T  S  V  K  F  A  A  E  G  E  L  V  V  S  G  S  A  D  K  :  T  V  R  V  W  Q  S  S  E  N  G  N  Y  D  C  R  H  V  L  K  D  H  T  A  E  :  V  Q  A  V  T  V  H  A  T  N  N  Y  F  V  T  A  S  L  D  S  T  W  C  F  Y  D  L  A  S  G  L  C  L  T  Q  :  V  A  D  A  S  E  S  E  G  Y  T  S  A  A  F  H  P  D  G  L  I  L  G  T  G  T  S  G  S  L  V  K  I  W  D  V  K  S  Q  :  A  N  V  A  K  F  D  G  H  V  G  S  V  T  A  I  S  F  S  E  N  G  Y  F  L  A  :  T  A  A  H  D  G  V  K  L  W  D  L  R  K  L  K  N  F  K  T  F  A  P  Y  D  D  N  T  P  T  Q  S   : V  E  F  D  H  S  G  S  Y  L  A  L  G  G  S  D  I  R :   F  L  :  S  L  S  S  R  Q  R  Q  G  *  M  E  F  H  Q  N  L  P  R  L  I  R  H  R :   Q  S  N  M  S  E  I  W  S  R  C  S  I  Y  S  C  R  I  Y  G  P  *  S  K  N  I  R  A  A  W  *  G  S  N  G  G  L  G  S  F  P  A  L  K  Q  T  A  F  S  F  A  S  A  A  R  S  Q  C  Y  L  E  G  R  R  S  M  R  V  L  F  F  N  M  Y  F  W  F  L  L  N  F  G  G  G  Q  A  N  R  H  N  H  K  L  E  I  T  S  E  V  Q  S  L  F  G  H  P  K  T  S  L  G  L  L  V  F  C  C  I  I  L  V  *  P  Y  C  P  S  W  K  Q  N  S  E  W  I  V  I  S  Y  S  T  S  I  F  H  V  *  L  *  S  I  *  N  A  L  C  T  L  L  F  F  F  M  F  K  S  *  S  E  F  I  V  V  Y  I  M  K  G  S  K  *  K  *  *  I  *  L  V  V  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43730" stop="43685"/>
                    <exon start="43557" stop="43472"/>
                    <exon start="42716" stop="42645"/>
                    <exon start="42526" stop="42464"/>
                    <exon start="42186" stop="42100"/>
                    <exon start="41196" stop="41055"/>
                    <exon start="40966" stop="40845"/>
                    <exon start="40661" stop="40545"/>
                    <exon start="39878" stop="39783"/>
                    <exon start="39645" stop="39586"/>
                    <exon start="39022" stop="38948"/>
                    <exon start="38097" stop="37993"/>
                    <exon start="37877" stop="37761"/>
                    <exon start="37653" stop="37576"/>
                    <exon start="37467" stop="37371"/>
                    <exon start="36859" stop="36808"/>
                    <exon start="36697" stop="36691"/>
                    <exon start="36275" stop="36246"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLFAFLSLSTMNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARGLLAQAERQIPMAATTAVGTTAVSNGKRVAEDEDVGPDGKKIRPGISHSVIETLTECNAGLSQQRKKRQIPATLAPVDAVARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATGGVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYDCRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAAFHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFKTFAPYDDNTPTQSVEFDHSGSYLALGGSDIRFLSLSSRQRQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36022" stop="35750"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNGGLGSFPALKQTAFSFASAARSQCYLEGRRSMRVLFFNMYFWFLLNFGGGQANRHNHKLEITSEVQSLFGHPKTSLGLLVFCCIILV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="64122" PGL_stop="67407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64165" e_stop="64214"/>
            <exon e_start="64400" e_stop="64467"/>
            <exon e_start="64733" e_stop="64768"/>
            <exon e_start="65032" e_stop="66799"/>
            <exon e_start="66910" e_stop="67407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.000" acc_prob="0.577" e_score="0.556"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="64165" e_stop="64214" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64215" i_stop="64399" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="64400" e_stop="64467" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64468" i_stop="64732" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="64733" e_stop="64768" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.577">
            <gDNA_intron_boundary i_start="64769" i_stop="65031" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="65032" e_stop="66799" e_length="1768"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.892">
            <gDNA_exon_boundary e_start="66910" e_stop="67407" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64165" stop="64214"/>
              <exon start="64400" stop="64467"/>
              <exon start="64733" stop="64768"/>
              <exon start="65032" stop="65534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65067" stop="65573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65386" stop="66217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65756" stop="66651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65756" stop="66249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66174" stop="66799"/>
              <exon start="66910" stop="67188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66799"/>
              <exon start="66910" stop="67048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66799"/>
              <exon start="66910" stop="67029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66297" stop="66799"/>
              <exon start="66910" stop="67078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66688" stop="66799"/>
              <exon start="66910" stop="67407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTG : GGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG : GGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAG : TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG : GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTTAGCTGGTAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</gDNA_template>
            <first_frame> V  I  L  L  L  E  V  K  V  V  D  E  V  S  S  M  W :   G  L  K  E  L  K  A  *  S  A  R  *  I  *  S  G  V  S  Y  F  F  G   : G  K  F  T  T  S  R  F  L  F  L  *   : V  L  V  D  F  G  L  F  V  *  P  C  L  Y  C  G  R  *  R  K  K  V  H  F  I  C  F  L  M  F  N  H  L  G  G  G  I  W  K  T  E  T  W  T  R  M  N  L  I  K  K  V  Y  C  S  L  *  T  R  K  N  K  Q  R  R  I  V  V  C  R  Q  D  *  *  K  S  *  N  H  S  T  Y  V  D  *  K  T  R  I  L  L  E  I  A  L  R  N  C  S  F  I  I  L  L  A  Y  K  I  S  F  R  S  I  *  *  V  L  T  K  D  T  S  F  A  A  L  N  W  Y  T  Y  T  P  H  V  T  S  L  Q  R  C  K  L  Y  Q  R  V  Q  V  Q  E  R  L  E  M  K  I  S  T  L  M  V  I  W  R  P  N  V  L  K  L  W  G  L  S  Q  V  M  S  L  T  P  P  R  S  G  F  L  V  L  *  L  V  V  R  V  C  *  T  F  *  R  V  P  Y  L  I  N  L  D  L  L  T  V  L  L  I  L  E  R  K  I  *  M  T  V  K  K  E  V  F  L  I  S  *  A  L  P  V  V  L  V  S  V  Q  H  R  S  Y  R  R  R  *  Q  I  M  D  L  S  M  Y  T  E  G  F  F  L  Y  L  V  Q  L  R  H  A  Q  I  N  H  V  F  Q  Q  L  P  L  F  L  K  E  C  S  R  G  D  G  K  M  V  Y  H  I  M  S  F  P  *  M  V  K  R  K  F  M  *  L  I  C  W  R  L  T  H  L  M  I  S  F  S  I  M  F  T  H  F  I  Q  D  K  K  A  K  R  N  A  P  S  L  Q  G  N  H  N  L  *  V  K  *  L  C  Q  L  Q  *  H  S  A  Q  P  S  W  R  L  W  R  R  D  L  L  C  L  V  P  W  I  N  I  W  M  R  Y  K  Q  V  I  S  S  G  R  T  K  S  W  Q  R  K  *  Q  M  C  S  E  L  V  S  L  I  S  R  E  A  Y  P  S  S  G  E  Q  A  P  F  L  K  M  L  R  G  R  H  P  *  I  C  M  M  I  I  I  H  A  A  M  L  F  *  I  S  R  F  R  Q  I  L  S  W  L  P  L  L  P  E  I  L  L  M  T  A  P  R  R  Q  R  R  V  A  G  V  *  S  F  S  R  N  L  R  L  E  V  K  M  H  L  L  R  Y  R  W  N  V  V  H  V  A  P  V  I  A  Q  Q  A  Q  M  L  *  F  Q  V  V  F  M  V  D  L  E  A  D  M  L  G  R  Q  A  C  W  S  G  G  A  L  V  G  T  V  I  V  E  A  G  I  S  G  A  P  S  Q  F  L  K  L  G  M  K  L  H  H  K  L  H  P  G  T  V  K  L  L  I  S  I  Y  R :   V  *  N  K  V  H  Q  S  *  K  C  R  I  F  M  M  V  C  I  T  S  I  F  I  R  L  Y  Q  L  C  S  L  S  P  *  L  L  L  S  F  I  D  I  V  L  S  Y  D  R  N  C  T  G  S  E  V  R  *  H  Q  V  W  Y  L  L  L  *  L  S  F  F  K  R  S  Q  T  N  R  P  L  E  M  V  Q  R  Y  N  I  *  L  S  L  L  A  G  R  V  L  D  R  R  F  V  C  *  L  T  L  S  F  C  *  C  N  E  *  Y  T  L  E  A  A  V  S  V  Q  I  V  Y  W  M  G  G  H  P  F  V  P  L  I  K  L  M  K  V  E  T  Y  *  F  L  S  G  L  L  I  L  *  S  L  V  Q  L  S  G   </first_frame>
            <second_frame>  L  F  C  C  W  R  *  K  W  W  M  R  F  L  P  C   : G  D  *  K  S  L  K  L  D  L  Q  G  E  F  E  V  G  F  H  I  F  L  E  :  G  S  S  P  Q  V  D  F  C  F  C  K  :  C  W  W  I  S  V  S  L  Y  N  R  V  Y  T  V  E  G  E  G  R  K  F  I  L  S  V  F  *  C  L  I  T  L  E  V  E  Y  G  K  Q  K  H  G  Q  G  *  T  *  *  R  R  F  I  A  A  C  E  Q  G  R  T  S  R  G  E  *  L  F  V  D  K  I  N  R  R  V  R  T  T  A  P  T  *  I  R  K  P  A  F  Y  W  K  L  R  S  E  I  A  L  S  *  F  S  W  L  T  K  *  A  S  E  A  Y  N  K  F  *  R  K  I  L  P  S  L  P  *  I  G  T  H  T  L  H  M  *  L  L  F  K  D  A  N  Y  I  K  E  F  R  F  K  R  G  *  K  *  K  S  P  H  *  W  *  S  G  D  R  M  S  S  N  C  G  D  *  V  K  L  C  P  *  L  L  R  G  V  D  S  W  C  Y  N  W  *  *  E  Y  A  E  H  F  K  E  S  L  T  *  S  I  W  I  C  *  L  Y  C  *  F  W  K  G  K  Y  K  *  Q  *  R  R  K  F  F  *  F  H  E  L  S  R  W  F  *  C  Q  F  S  T  E  A  T  E  G  D  D  R  S  W  I  *  A  C  T  Q  K  G  S  F  C  I  *  Y  S  F  D  M  L  R  S  I  M  S  F  S  S  C  P  Y  F  S  R  N  V  P  E  E  M  E  K  W  F  T  T  L  C  L  F  H  R  W  *  K  G  S  L  C  S  *  S  A  G  D  *  L  T  *  *  *  V  S  R  L  C  L  H  I  S  F  K  T  R  K  Q  K  G  M  R  L  L  C  K  G  I  T  T  C  R  *  N  D  C  V  N  F  S  D  T  Q  P  N  Q  V  G  D  Y  G  D  A  I  C  C  V  W  F  H  G  S  I  Y  G  *  D  T  N  K  S  Y  P  Q  E  E  Q  K  V  G  K  E  S  N  R  C  V  Q  N  *  S  V  L  *  A  E  K  L  I  Q  V  R  G  N  K  R  H  S  *  R  C  F  V  D  A  I  H  R  Y  V  *  *  L  L  F  M  R  Q  C  S  F  R  S  A  D  S  A  K  F  *  A  G  C  R  C  Y  Q  R  S  S  *  *  Q  L  Q  G  G  R  E  G  W  L  G  Y  E  V  S  Q  E  I  S  D  W  K  *  K  C  T  S  *  D  I  G  G  M  S  F  T  W  H  Q  *  L  L  N  K  H  R  C  Y  N  S  K  W  F  S  W  W  T  *  K  Q  T  C  W  A  V  K  P  V  G  A  V  E  L  W  W  A  L  *  L  W  R  L  G  S  R  V  P  P  H  S  S  *  N  W  E  *  S  F  I  T  N  Y  I  R  G  L  S  N  F  *  S  L  Y  T   : G  F  E  T  K  C  T  S  H  E  N  V  E  Y  S  *  W  F  V  L  H  P  F  S  F  D  S  I  S  F  A  V  F  R  H  S  C  C  F  H  S  *  T  *  S  F  P  T  T  E  T  V  Q  E  V  K  *  D  D  T  K  Y  G  I  C  C  Y  S  S  L  S  L  K  E  V  R  Q  I  D  H  *  K  W  F  K  D  I  T  Y  D  C  L  S  *  L  V  E  Y  *  I  G  D  S  F  V  S  S  H  Y  H  F  V  S  V  M  N  D  T  L  *  K  Q  R  S  V  Y  K  S  S  I  G  W  G  D  I  H  L  Y  R  *  L  S  *  *  K  S  K  H  I  D  S  *  V  V  C  *  S  F  D  L  *  C  N  F  Q  A  </second_frame>
            <third_frame>   Y  F  V  V  G  G  E  S  G  G  *  G  F  F  H  V  :  G  I  E  R  A  *  S  L  I  C  K  V  N  L  K  W  G  F  I  F  F  W  R :   E  V  H  H  K  *  I  S  V  F  V  S :   A  G  G  F  R  S  L  C  I  T  V  F  I  L  W  K  V  K  E  E  S  S  F  Y  L  F  S  N  V  *  S  P  W  R  W  N  M  E  N  R  N  M  D  K  D  E  P  N  K  E  G  L  L  Q  L  V  N  K  E  E  Q  A  E  E  N  S  C  L  S  T  R  L  I  E  E  L  E  P  Q  H  L  R  R  L  E  N  P  H  F  T  G  N  C  A  Q  K  L  L  F  H  N  S  L  G  L  Q  N  K  L  P  K  H  I  I  S  F  D  E  R  Y  F  L  R  C  L  E  L  V  H  I  H  S  T  C  N  F  S  S  K  M  Q  I  I  S  K  S  S  G  S  R  E  V  R  N  E  N  L  H  T  N  G  N  L  A  T  E  C  P  Q  T  V  G  I  E  S  S  Y  V  P  D  S  S  A  E  W  I  L  G  A  I  T  G  S  K  S  M  L  N  I  L  K  S  P  L  L  N  Q  F  G  S  V  N  C  T  V  D  S  G  K  E  N  I  N  D  S  E  E  G  S  F  S  D  F  M  S  S  P  G  G  F  S  V  S  S  A  Q  K  L  Q  K  E  M  T  D  H  G  S  E  H  V  H  R  R  V  L  S  V  S  S  T  A  S  T  C  S  D  Q  S  C  L  S  A  A  A  P  I  S  Q  G  M  F  Q  R  R  W  K  N  G  L  P  H  Y  V  F  S  I  D  G  K  K  E  V  Y  V  A  D  L  L  E  I  D  S  P  D  D  K  F  L  D  Y  V  Y  T  F  H  S  R  Q  E  S  K  K  E  C  A  F  S  A  R  E  S  Q  L  V  G  K  M  T  V  S  T  S  V  T  L  S  P  T  K  L  E  I  M  E  T  R  F  V  V  F  G  S  M  D  Q  Y  M  D  E  I  Q  T  S  H  I  L  R  K  N  K  K  L  A  K  K  V  T  D  V  F  R  T  S  Q  S  Y  K  Q  R  S  L  S  K  F  G  G  T  S  A  I  L  E  D  A  S  W  T  P  S  I  D  M  Y  D  D  Y  Y  S  C  G  N  A  L  L  D  Q  Q  I  P  P  N  F  E  L  A  A  V  V  T  R  D  P  L  N  D  S  S  K  E  A  E  K  G  G  W  G  M  K  F  L  K  K  S  P  T  G  S  K  N  A  P  P  E  I  S  V  E  C  R  S  R  G  T  S  D  C  S  T  S  T  D  V  I  I  P  S  G  F  H  G  G  P  R  S  R  H  A  G  P  S  S  L  L  E  R  W  S  S  G  G  H  C  D  C  G  G  W  D  L  G  C  P  L  T  V  L  K  T  G  N  E  A  S  S  Q  T  T  S  G  D  C  Q  T  F  D  L  Y  I  Q  :  G  L  K  Q  S  A  P  V  M  K  M  S  N  I  H  D  G  L  Y  Y  I  H  F  H  S  T  L  S  A  L  Q  S  F  A  I  A  A  A  F  I  H  R  H  S  P  F  L  R  P  K  L  Y  R  K  *  S  K  M  T  P  S  M  V  S  V  V  I  A  L  F  L  *  K  K  S  D  K  S  T  I  R  N  G  S  K  I  *  H  M  I  V  S  L  S  W  *  S  I  R  *  E  I  R  L  L  A  H  I  I  I  L  L  V  *  *  M  I  H  F  R  S  S  G  Q  C  T  N  R  L  L  D  G  G  T  S  I  C  T  V  D  *  V  N  E  S  R  N  I  L  I  L  E  W  F  V  D  P  L  I  S  S  A  T  F  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65123" stop="66799"/>
                    <exon start="66910" stop="67074"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1839</number_coding_nucleotides>
                  <number_encoded_amino_acids>613</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPWRWNMENRNMDKDEPNKEGLLQLVNKEEQAEENSCLSTRLIEELEPQHLRRLENPHFTGNCAQKLLFHNSLGLQNKLPKHIISFDERYFLRCLELVHIHSTCNFSSKMQIISKSSGSREVRNENLHTNGNLATECPQTVGIESSYVPDSSAEWILGAITGSKSMLNILKSPLLNQFGSVNCTVDSGKENINDSEEGSFSDFMSSPGGFSVSSAQKLQKEMTDHGSEHVHRRVLSVSSTASTCSDQSCLSAAAPISQGMFQRRWKNGLPHYVFSIDGKKEVYVADLLEIDSPDDKFLDYVYTFHSRQESKKECAFSARESQLVGKMTVSTSVTLSPTKLEIMETRFVVFGSMDQYMDEIQTSHILRKNKKLAKKVTDVFRTSQSYKQRSLSKFGGTSAILEDASWTPSIDMYDDYYSCGNALLDQQIPPNFELAAVVTRDPLNDSSKEAEKGGWGMKFLKKSPTGSKNAPPEISVECRSRGTSDCSTSTDVIIPSGFHGGPRSRHAGPSSLLERWSSGGHCDCGGWDLGCPLTVLKTGNEASSQTTSGDCQTFDLYIQGLKQSAPVMKMSNIHDGLYYIHFHSTLSALQSFAIAAAFIHRHSPFLRPKLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64122" e_stop="64467"/>
            <exon e_start="65032" e_stop="66799"/>
            <exon e_start="66910" e_stop="67407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.577" e_score="0.986"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="64122" e_stop="64467" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.577">
            <gDNA_intron_boundary i_start="64468" i_stop="65031" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="65032" e_stop="66799" e_length="1768"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="66910" e_stop="67407" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64122" stop="64467"/>
              <exon start="65032" stop="65289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65067" stop="65573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65386" stop="66217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65756" stop="66651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65756" stop="66249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66174" stop="66799"/>
              <exon start="66910" stop="67188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66799"/>
              <exon start="66910" stop="67048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66296" stop="66799"/>
              <exon start="66910" stop="67029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66297" stop="66799"/>
              <exon start="66910" stop="67078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66688" stop="66799"/>
              <exon start="66910" stop="67407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG : TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG : GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTTAGCTGGTAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</gDNA_template>
            <first_frame> G  L  V  F  F  F  *  N  Q  D  S  S  K  N  S  Y  F  V  V  G  G  E  S  G  G  *  G  F  F  H  V  V  Y  F  C  R  S  N  F  Y  F  F  N  S  Q  S  F  L  L  F  F  L  Y  F  V  L  K  *  T  F  *  R  T  N  C  I  S  Y  L  C  L  V  G  L  S  *  N  W  L  T  L  S  L  S  L  C  G  V  C  C  F  *  R  G  L  K  E  L  K  A  *  S  A  R  *  I  *  S  G  V  S  Y  F  F  G   : V  L  V  D  F  G  L  F  V  *  P  C  L  Y  C  G  R  *  R  K  K  V  H  F  I  C  F  L  M  F  N  H  L  G  G  G  I  W  K  T  E  T  W  T  R  M  N  L  I  K  K  V  Y  C  S  L  *  T  R  K  N  K  Q  R  R  I  V  V  C  R  Q  D  *  *  K  S  *  N  H  S  T  Y  V  D  *  K  T  R  I  L  L  E  I  A  L  R  N  C  S  F  I  I  L  L  A  Y  K  I  S  F  R  S  I  *  *  V  L  T  K  D  T  S  F  A  A  L  N  W  Y  T  Y  T  P  H  V  T  S  L  Q  R  C  K  L  Y  Q  R  V  Q  V  Q  E  R  L  E  M  K  I  S  T  L  M  V  I  W  R  P  N  V  L  K  L  W  G  L  S  Q  V  M  S  L  T  P  P  R  S  G  F  L  V  L  *  L  V  V  R  V  C  *  T  F  *  R  V  P  Y  L  I  N  L  D  L  L  T  V  L  L  I  L  E  R  K  I  *  M  T  V  K  K  E  V  F  L  I  S  *  A  L  P  V  V  L  V  S  V  Q  H  R  S  Y  R  R  R  *  Q  I  M  D  L  S  M  Y  T  E  G  F  F  L  Y  L  V  Q  L  R  H  A  Q  I  N  H  V  F  Q  Q  L  P  L  F  L  K  E  C  S  R  G  D  G  K  M  V  Y  H  I  M  S  F  P  *  M  V  K  R  K  F  M  *  L  I  C  W  R  L  T  H  L  M  I  S  F  S  I  M  F  T  H  F  I  Q  D  K  K  A  K  R  N  A  P  S  L  Q  G  N  H  N  L  *  V  K  *  L  C  Q  L  Q  *  H  S  A  Q  P  S  W  R  L  W  R  R  D  L  L  C  L  V  P  W  I  N  I  W  M  R  Y  K  Q  V  I  S  S  G  R  T  K  S  W  Q  R  K  *  Q  M  C  S  E  L  V  S  L  I  S  R  E  A  Y  P  S  S  G  E  Q  A  P  F  L  K  M  L  R  G  R  H  P  *  I  C  M  M  I  I  I  H  A  A  M  L  F  *  I  S  R  F  R  Q  I  L  S  W  L  P  L  L  P  E  I  L  L  M  T  A  P  R  R  Q  R  R  V  A  G  V  *  S  F  S  R  N  L  R  L  E  V  K  M  H  L  L  R  Y  R  W  N  V  V  H  V  A  P  V  I  A  Q  Q  A  Q  M  L  *  F  Q  V  V  F  M  V  D  L  E  A  D  M  L  G  R  Q  A  C  W  S  G  G  A  L  V  G  T  V  I  V  E  A  G  I  S  G  A  P  S  Q  F  L  K  L  G  M  K  L  H  H  K  L  H  P  G  T  V  K  L  L  I  S  I  Y  R :   V  *  N  K  V  H  Q  S  *  K  C  R  I  F  M  M  V  C  I  T  S  I  F  I  R  L  Y  Q  L  C  S  L  S  P  *  L  L  L  S  F  I  D  I  V  L  S  Y  D  R  N  C  T  G  S  E  V  R  *  H  Q  V  W  Y  L  L  L  *  L  S  F  F  K  R  S  Q  T  N  R  P  L  E  M  V  Q  R  Y  N  I  *  L  S  L  L  A  G  R  V  L  D  R  R  F  V  C  *  L  T  L  S  F  C  *  C  N  E  *  Y  T  L  E  A  A  V  S  V  Q  I  V  Y  W  M  G  G  H  P  F  V  P  L  I  K  L  M  K  V  E  T  Y  *  F  L  S  G  L  L  I  L  *  S  L  V  Q  L  S  G   </first_frame>
            <second_frame>  V  W  Y  S  S  S  R  I  K  I  R  L  K  T  V  I  L  L  L  E  V  K  V  V  D  E  V  S  S  M  W  Y  T  F  V  E  V  I  F  I  S  L  I  A  K  V  S  C  F  S  F  S  T  L  F  *  N  R  L  F  E  G  L  I  V  Y  L  I  F  V  *  W  G  C  L  E  I  G  *  H  *  V  Y  L  Y  V  V  F  V  V  S  E  G  D  *  K  S  L  K  L  D  L  Q  G  E  F  E  V  G  F  H  I  F  L  E  :  C  W  W  I  S  V  S  L  Y  N  R  V  Y  T  V  E  G  E  G  R  K  F  I  L  S  V  F  *  C  L  I  T  L  E  V  E  Y  G  K  Q  K  H  G  Q  G  *  T  *  *  R  R  F  I  A  A  C  E  Q  G  R  T  S  R  G  E  *  L  F  V  D  K  I  N  R  R  V  R  T  T  A  P  T  *  I  R  K  P  A  F  Y  W  K  L  R  S  E  I  A  L  S  *  F  S  W  L  T  K  *  A  S  E  A  Y  N  K  F  *  R  K  I  L  P  S  L  P  *  I  G  T  H  T  L  H  M  *  L  L  F  K  D  A  N  Y  I  K  E  F  R  F  K  R  G  *  K  *  K  S  P  H  *  W  *  S  G  D  R  M  S  S  N  C  G  D  *  V  K  L  C  P  *  L  L  R  G  V  D  S  W  C  Y  N  W  *  *  E  Y  A  E  H  F  K  E  S  L  T  *  S  I  W  I  C  *  L  Y  C  *  F  W  K  G  K  Y  K  *  Q  *  R  R  K  F  F  *  F  H  E  L  S  R  W  F  *  C  Q  F  S  T  E  A  T  E  G  D  D  R  S  W  I  *  A  C  T  Q  K  G  S  F  C  I  *  Y  S  F  D  M  L  R  S  I  M  S  F  S  S  C  P  Y  F  S  R  N  V  P  E  E  M  E  K  W  F  T  T  L  C  L  F  H  R  W  *  K  G  S  L  C  S  *  S  A  G  D  *  L  T  *  *  *  V  S  R  L  C  L  H  I  S  F  K  T  R  K  Q  K  G  M  R  L  L  C  K  G  I  T  T  C  R  *  N  D  C  V  N  F  S  D  T  Q  P  N  Q  V  G  D  Y  G  D  A  I  C  C  V  W  F  H  G  S  I  Y  G  *  D  T  N  K  S  Y  P  Q  E  E  Q  K  V  G  K  E  S  N  R  C  V  Q  N  *  S  V  L  *  A  E  K  L  I  Q  V  R  G  N  K  R  H  S  *  R  C  F  V  D  A  I  H  R  Y  V  *  *  L  L  F  M  R  Q  C  S  F  R  S  A  D  S  A  K  F  *  A  G  C  R  C  Y  Q  R  S  S  *  *  Q  L  Q  G  G  R  E  G  W  L  G  Y  E  V  S  Q  E  I  S  D  W  K  *  K  C  T  S  *  D  I  G  G  M  S  F  T  W  H  Q  *  L  L  N  K  H  R  C  Y  N  S  K  W  F  S  W  W  T  *  K  Q  T  C  W  A  V  K  P  V  G  A  V  E  L  W  W  A  L  *  L  W  R  L  G  S  R  V  P  P  H  S  S  *  N  W  E  *  S  F  I  T  N  Y  I  R  G  L  S  N  F  *  S  L  Y  T   : G  F  E  T  K  C  T  S  H  E  N  V  E  Y  S  *  W  F  V  L  H  P  F  S  F  D  S  I  S  F  A  V  F  R  H  S  C  C  F  H  S  *  T  *  S  F  P  T  T  E  T  V  Q  E  V  K  *  D  D  T  K  Y  G  I  C  C  Y  S  S  L  S  L  K  E  V  R  Q  I  D  H  *  K  W  F  K  D  I  T  Y  D  C  L  S  *  L  V  E  Y  *  I  G  D  S  F  V  S  S  H  Y  H  F  V  S  V  M  N  D  T  L  *  K  Q  R  S  V  Y  K  S  S  I  G  W  G  D  I  H  L  Y  R  *  L  S  *  *  K  S  K  H  I  D  S  *  V  V  C  *  S  F  D  L  *  C  N  F  Q  A  </second_frame>
            <third_frame>   F  G  I  L  L  L  E  S  R  F  V  *  K  Q  L  F  C  C  W  R  *  K  W  W  M  R  F  L  P  C  G  I  L  L  *  K  *  F  L  F  L  *  *  P  K  F  L  A  F  L  S  L  L  C  F  K  I  D  F  L  K  D  *  L  Y  I  L  S  L  F  S  G  V  V  L  K  L  A  N  I  K  F  I  F  M  W  C  L  L  F  L  K  G  I  E  R  A  *  S  L  I  C  K  V  N  L  K  W  G  F  I  F  F  W  S :   A  G  G  F  R  S  L  C  I  T  V  F  I  L  W  K  V  K  E  E  S  S  F  Y  L  F  S  N  V  *  S  P  W  R  W  N  M  E  N  R  N  M  D  K  D  E  P  N  K  E  G  L  L  Q  L  V  N  K  E  E  Q  A  E  E  N  S  C  L  S  T  R  L  I  E  E  L  E  P  Q  H  L  R  R  L  E  N  P  H  F  T  G  N  C  A  Q  K  L  L  F  H  N  S  L  G  L  Q  N  K  L  P  K  H  I  I  S  F  D  E  R  Y  F  L  R  C  L  E  L  V  H  I  H  S  T  C  N  F  S  S  K  M  Q  I  I  S  K  S  S  G  S  R  E  V  R  N  E  N  L  H  T  N  G  N  L  A  T  E  C  P  Q  T  V  G  I  E  S  S  Y  V  P  D  S  S  A  E  W  I  L  G  A  I  T  G  S  K  S  M  L  N  I  L  K  S  P  L  L  N  Q  F  G  S  V  N  C  T  V  D  S  G  K  E  N  I  N  D  S  E  E  G  S  F  S  D  F  M  S  S  P  G  G  F  S  V  S  S  A  Q  K  L  Q  K  E  M  T  D  H  G  S  E  H  V  H  R  R  V  L  S  V  S  S  T  A  S  T  C  S  D  Q  S  C  L  S  A  A  A  P  I  S  Q  G  M  F  Q  R  R  W  K  N  G  L  P  H  Y  V  F  S  I  D  G  K  K  E  V  Y  V  A  D  L  L  E  I  D  S  P  D  D  K  F  L  D  Y  V  Y  T  F  H  S  R  Q  E  S  K  K  E  C  A  F  S  A  R  E  S  Q  L  V  G  K  M  T  V  S  T  S  V  T  L  S  P  T  K  L  E  I  M  E  T  R  F  V  V  F  G  S  M  D  Q  Y  M  D  E  I  Q  T  S  H  I  L  R  K  N  K  K  L  A  K  K  V  T  D  V  F  R  T  S  Q  S  Y  K  Q  R  S  L  S  K  F  G  G  T  S  A  I  L  E  D  A  S  W  T  P  S  I  D  M  Y  D  D  Y  Y  S  C  G  N  A  L  L  D  Q  Q  I  P  P  N  F  E  L  A  A  V  V  T  R  D  P  L  N  D  S  S  K  E  A  E  K  G  G  W  G  M  K  F  L  K  K  S  P  T  G  S  K  N  A  P  P  E  I  S  V  E  C  R  S  R  G  T  S  D  C  S  T  S  T  D  V  I  I  P  S  G  F  H  G  G  P  R  S  R  H  A  G  P  S  S  L  L  E  R  W  S  S  G  G  H  C  D  C  G  G  W  D  L  G  C  P  L  T  V  L  K  T  G  N  E  A  S  S  Q  T  T  S  G  D  C  Q  T  F  D  L  Y  I  Q  :  G  L  K  Q  S  A  P  V  M  K  M  S  N  I  H  D  G  L  Y  Y  I  H  F  H  S  T  L  S  A  L  Q  S  F  A  I  A  A  A  F  I  H  R  H  S  P  F  L  R  P  K  L  Y  R  K  *  S  K  M  T  P  S  M  V  S  V  V  I  A  L  F  L  *  K  K  S  D  K  S  T  I  R  N  G  S  K  I  *  H  M  I  V  S  L  S  W  *  S  I  R  *  E  I  R  L  L  A  H  I  I  I  L  L  V  *  *  M  I  H  F  R  S  S  G  Q  C  T  N  R  L  L  D  G  G  T  S  I  C  T  V  D  *  V  N  E  S  R  N  I  L  I  L  E  W  F  V  D  P  L  I  S  S  A  T  F  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65123" stop="66799"/>
                    <exon start="66910" stop="67074"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1839</number_coding_nucleotides>
                  <number_encoded_amino_acids>613</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPWRWNMENRNMDKDEPNKEGLLQLVNKEEQAEENSCLSTRLIEELEPQHLRRLENPHFTGNCAQKLLFHNSLGLQNKLPKHIISFDERYFLRCLELVHIHSTCNFSSKMQIISKSSGSREVRNENLHTNGNLATECPQTVGIESSYVPDSSAEWILGAITGSKSMLNILKSPLLNQFGSVNCTVDSGKENINDSEEGSFSDFMSSPGGFSVSSAQKLQKEMTDHGSEHVHRRVLSVSSTASTCSDQSCLSAAAPISQGMFQRRWKNGLPHYVFSIDGKKEVYVADLLEIDSPDDKFLDYVYTFHSRQESKKECAFSARESQLVGKMTVSTSVTLSPTKLEIMETRFVVFGSMDQYMDEIQTSHILRKNKKLAKKVTDVFRTSQSYKQRSLSKFGGTSAILEDASWTPSIDMYDDYYSCGNALLDQQIPPNFELAAVVTRDPLNDSSKEAEKGGWGMKFLKKSPTGSKNAPPEISVECRSRGTSDCSTSTDVIIPSGFHGGPRSRHAGPSSLLERWSSGGHCDCGGWDLGCPLTVLKTGNEASSQTTSGDCQTFDLYIQGLKQSAPVMKMSNIHDGLYYIHFHSTLSALQSFAIAAAFIHRHSPFLRPKLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80867" PGL_stop="83456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80867" e_stop="80907"/>
            <exon e_start="80999" e_stop="81283"/>
            <exon e_start="83003" e_stop="83044"/>
            <exon e_start="83211" e_stop="83456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80867" e_stop="80907" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80999" e_stop="81283" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83003" e_stop="83044" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83211" e_stop="83456" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80867" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80890" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80897" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80900" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80902" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81001" stop="81283"/>
              <exon start="83003" stop="83024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81005" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81006" stop="81283"/>
              <exon start="83003" stop="83019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81047" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81047" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81047" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81099" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG : GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG : ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG : GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</gDNA_template>
            <first_frame> *  C  T  V  L  S  G  S  K  N  V  E  A  R :   A  W  R  F  C  R  K  Q  I  P  D  V  T  G  F  T  G  G  G  D  G  E  L  C  *  *  H  W  S  E  E  P  L  H  H  F  S  K  G  Y  K  G  *  V  E  S  V  T  I  C  L  C  R  *  Y  G  N  G  Y  C  K  E  R  *  T  *  F  E  E  E  S  D  A  C  C  H  C  *  T  T  *  T  L  E  T  K  G  W  C  F  H  V  L  *  R :   *  C  W  S  D  C  E  S  Q  R  R  N  E  R :   F  C  Y  H  W  S  N  W  K  G  V  C  *  S  M  A  K  D  C  *  C  S  *  C  N  C  L  N  Y  *  E  L  V  N  L  Q  F  *  Y  L  L  F  G  V  L  L  L  S  Y  I  Q  T  N  A  A  M  L  Y  C  S  K  I  Y  K  F  I  *  Y  P  L  I  L  L  L  N  I  T  V  I  Y  F   </first_frame>
            <second_frame>  N  V  P  Y  F  Q  D  P  K  M  S  K  R   : G  R  G  G  S  A  G  N  K  F  R  M  S  L  G  L  P  V  A  A  T  V  N  C  A  D  N  T  G  A  K  N  L  Y  I  I  S  V  K  G  I  K  G  R  L  N  R  L  P  S  A  C  V  G  D  M  V  M  A  T  V  K  K  G  K  P  D  L  R  K  K  V  M  P  A  V  I  V  R  Q  R  K  P  W  R  R  K  D  G  V  F  M  Y  F  E   : D  N  A  G  V  I  V  N  P  K  G  E  M  K   : G  S  A  I  T  G  P  I  G  K  E  C  A  D  L  W  P  R  I  A  S  A  A  N  A  I  V  *  T  T  K  S  *  L  T  C  S  F  D  T  F  Y  L  E  C  C  Y  C  H  I  Y  K  Q  M  Q  Q  C  C  I  A  L  R  F  I  S  S  Y  N  T  H  L  F  C  Y  *  I  S  L  S  F  T  F  </second_frame>
            <third_frame>   M  Y  R  T  F  R  I  Q  K  C  R  S  E  :  G  V  E  V  L  P  E  T  N  S  G  C  H  W  V  Y  R  W  R  R  R  *  T  V  L  I  T  L  E  R  R  T  F  T  S  F  Q  *  R  V  *  R  V  G  *  I  G  Y  H  L  L  V  *  V  I  W  *  W  L  L  *  R  K  V  N  L  I  *  G  R  K  *  C  L  L  S  L  L  D  N  V  N  L  G  D  E  R  M  V  F  S  C  T  L  K  :  I  M  L  E  *  L  *  I  P  K  E  K  *  K  :  V  L  L  S  L  V  Q  L  E  R  S  V  L  I  Y  G  Q  G  L  L  V  Q  L  M  Q  L  S  E  L  L  R  V  S  *  P  A  V  L  I  P  F  I  W  S  A  V  I  V  I  Y  T  N  K  C  S  N  V  V  L  L  *  D  L  *  V  H  I  I  P  T  Y  F  A  T  K  Y  H  C  H  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80868" stop="80907"/>
                    <exon start="80999" stop="81283"/>
                    <exon start="83003" stop="83044"/>
                    <exon start="83211" stop="83293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPYFQDPKMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="85723" PGL_stop="87176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85723" e_stop="86119"/>
            <exon e_start="86738" e_stop="86947"/>
            <exon e_start="87027" e_stop="87176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85723" e_stop="86119" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86738" e_stop="86947" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="87027" e_stop="87176" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85723" stop="86119"/>
              <exon start="86738" stop="86779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85730" stop="86119"/>
              <exon start="86738" stop="86947"/>
              <exon start="87027" stop="87176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85730" stop="86119"/>
              <exon start="86738" stop="86765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85732" stop="86119"/>
              <exon start="86738" stop="86947"/>
              <exon start="87027" stop="87135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85797" stop="86119"/>
              <exon start="86738" stop="86947"/>
              <exon start="87027" stop="87093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85797" stop="86119"/>
              <exon start="86738" stop="86927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG : GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG : AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGTAGCATTAATGGTCTTCCAAGTGCAAAAAGATCATTCAAACT</gDNA_template>
            <first_frame> K  S  Q  K  K  W  Q  E  N  L  E  F  S  L  Q  F  F  V  F  F  Q  L  H  V  L  E  I  G  T  F  C  H  N  T  K  P  I  V  V  S  K  L  A  *  K  I  I  V  R  V  G  E  *  M  L  S  Y  T  T  L  E  I  M  L  L  F  L  K  N  V  L  H  I  L  E  N  I  *  L  L  L  N  I  K  L  I  L  K  E  L  L  M  N  V  Y  F  I  L  V  L  I  V  F  W  K  M  M  E  K  M  L  G  F  L  I  L  M  I  L  F  F  P  Q  F  L  T  T  R  K  M  V  L   : G  E  I  S  *  M  *  H  L  W  R  I  G  *  A  K  G  K  E  Q  H  W  N  I  L  *  S  C  S  I  I  L  K  N  *  E  F  K  S  F  L  F  L  R  E  E  N  I  L  D  P  P  L  S  T  I  L  S  K  L  I  S  M  D  G  I  A  S  Y  *   : E  I  K  K  M  N  A  R  M  H  R  H  S  R  Q  R  *  E  V  N  L  *  V  K  V  I  E  L  L  A  L  L  E  T  N  G  V  A  L  M  V  F  Q  V  Q  K  D  H  S  N  </first_frame>
            <second_frame>  N  L  K  K  N  G  K  K  I  W  N  F  L  Y  N  F  L  Y  S  F  N  F  M  S  W  R  L  E  H  F  V  T  T  Q  N  Q  *  W  S  P  N  *  P  K  K  L  L  *  E  L  E  N  E  C  *  V  T  Q  H  *  R  L  C  C  C  S  S  R  M  C  C  I  Y  W  K  I  Y  D  F  Y  S  I  *  S  *  F  *  K  N  Y  *  *  M  Y  T  L  Y  *  Y  *  L  Y  F  G  K  *  W  K  R  C  L  D  F  *  Y  *  *  Y  S  S  F  L  S  S  L  L  Q  E  K  W  F  W  :  G  K  *  A  K  C  D  I  F  G  G  L  D  E  P  R  E  R  N  S  I  G  T  F  F  K  V  V  Q  S  S  *  R  T  R  S  S  N  L  S  C  F  F  E  K  R  T  S  *  I  R  H  C  R  Q  S  C  Q  S  *  F  L  W  M  E  *  P  H  T  K  :  R  S  R  R  *  M  Q  E  C  T  D  I  Q  G  R  D  K  K  *  T  Y  K  S  R  L  *  N  C  W  H  Y  W  R  P  M  E  *  H  *  W  S  S  K  C  K  K  I  I  Q  T </second_frame>
            <third_frame>   I  S  K  K  M  A  R  K  F  G  I  F  F  T  I  F  C  I  L  S  T  S  C  L  G  D  W  N  I  L  S  Q  H  K  T  N  S  G  L  Q  I  S  L  K  N  Y  C  E  S  W  R  M  N  V  E  L  H  N  I  R  D  Y  V  V  V  P  Q  E  C  V  A  Y  I  G  K  Y  M  T  S  T  Q  Y  K  V  D  F  E  R  T  I  N  E  C  I  L  Y  I  S  T  N  C  I  L  E  N  D  G  K  D  A  W  I  F  D  I  D  D  T  L  L  S  S  V  P  Y  Y  K  K  N  G  F  G :   G  N  K  L  N  V  T  S  L  E  D  W  M  S  Q  G  K  G  T  A  L  E  H  S  L  K  L  F  N  H  L  K  E  L  G  V  Q  I  F  L  V  S  S  R  R  E  H  L  R  S  A  T  V  D  N  L  V  K  V  D  F  Y  G  W  N  S  L  I  L  R :   D  Q  E  D  E  C  K  N  A  Q  T  F  K  A  E  I  R  S  K  L  I  S  Q  G  Y  R  I  V  G  I  I  G  D  Q  W  S  S  I  N  G  L  P  S  A  K  R  S  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85725" stop="86119"/>
                    <exon start="86738" stop="86947"/>
                    <exon start="87027" stop="87174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKKMARKFGIFFTIFCILSTSCLGDWNILSQHKTNSGLQISLKNYCESWRMNVELHNIRDYVVVPQECVAYIGKYMTSTQYKVDFERTINECILYISTNCILENDGKDAWIFDIDDTLLSSVPYYKKNGFGGNKLNVTSLEDWMSQGKGTALEHSLKLFNHLKELGVQIFLVSSRREHLRSATVDNLVKVDFYGWNSLILRDQEDECKNAQTFKAEIRSKLISQGYRIVGIIGDQWSSINGLPSAKRSFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90664" PGL_stop="97305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90664" e_stop="90925"/>
            <exon e_start="91579" e_stop="91747"/>
            <exon e_start="91880" e_stop="92005"/>
            <exon e_start="93578" e_stop="93640"/>
            <exon e_start="93747" e_stop="94034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90664" e_stop="90925" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.945">
            <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91579" e_stop="91747" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91880" e_stop="92005" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93578" e_stop="93640" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93747" e_stop="94034" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90664" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90672" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90674" stop="90886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90681" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90683" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90689" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90693" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90695" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90700" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90712" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90804" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="94034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90823" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91709" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="94034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91911" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91923" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG : TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA : CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG : ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT : GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</gDNA_template>
            <first_frame> N  S  F  T  P  L  R  R  E  K  A  I  Q  K  E  R  I  L  T  G  K  Q  W  P  P  K  H  R  *  R  R  R  R  F  R  R  *  R  Q  R  R  L  W  R  S  S  R  I  S  *  R  G  S  G  R  S  G  S  I  T  S  L  N  R  N  K  A  S  L  G  E  V  L  F  E  K  L  I  L  L  K  L  L  R  N  S  G   : V  Y  M  I  K  Y  S  S  P  A  R  L  L  L  M  R  T  F  I  C  S  K  L  G  L  S  P  N  G  K  I  L  S  V  P  M  V  A  S  G  L  L  L  A  A  E  R  L  I  S  R  L  C  G  *  K  H :   *  W  H  W  S  A  S  N  L  M  S  Q  K  I  Y  V  G  W  L  L  V  C  V  G  V  R  I  N  F  P  C  G  L  R  Q  P  P  M  K  Q  L  R :   W  A  L  V  G  S  G  R  R  S  L  M  P  K  R  Y  P  I  V  S  M :   M  I  L  K  E  R  G  Q  L  R  A  D  I  L  C  E  I  S  L  S  C  G  I  N  T  T  P  *  A  L  Y  Q  Y  *  N  C  T  I  S  T  F  L  R  L  S  A  A  N  F  D  L  I  E  I  Y  S  N  L  M  Y  V  W  M  Y  C  I  K  D  F  V  L  M  F  V  I  Y  V  V  S  L  Y  I  S  S  R  L  Y  G  R  K  L  S  R  F  I   </first_frame>
            <second_frame>  I  P  L  R  L  S  V  V  K  K  L  Y  K  R  R  G  F  *  R  E  N  N  G  H  R  S  T  G  R  G  D  G  D  S  V  G  S  G  S  G  D  C  G  E  A  A  A  *  A  R  E  E  V  D  V  L  V  R  *  P  V  *  T  E  T  R  R  R  L  G  K  F  S  S  K  S  L  Y  F  *  N  C  *  G  I  L  E  :  F  I  *  S  N  I  Q  A  Q  Q  G  Y  C  *  C  G  L  S  F  V  Q  S  W  D  *  A  Q  M  G  R  S  *  V  C  Q  W  W  Q  V  D  C  Y  *  Q  Q  K  G  *  S  R  D  Y  V  A  R  N   : T  D  G  I  G  R  R  A  I  *  *  V  R  R  Y  M  W  G  G  C  *  C  A  *  E  S  G  *  T  F  L  V  D  *  D  S  H  Q  *  S  S  S   : D  G  H  W  *  E  V  E  G  D  H  *  C  R  K  D  I  L  *  F  P   : *  *  F  *  K  R  E  V  S  *  E  P  I  Y  C  V  K  F  L  Y  R  V  E  L  T  P  L  L  K  L  F  T  N  T  E  I  V  R  L  A  L  F  C  A  C  L  L  Q  I  L  I  L  L  K  F  I  R  T  *  C  M  F  G  C  I  A  L  K  I  L  F  *  C  L  L  F  M  W  Y  H  F  I  S  Q  V  D  S  M  G  E  S  L  V  D  S  L  </second_frame>
            <third_frame>   F  L  Y  A  S  P  S  *  K  S  Y  T  K  G  E  D  F  D  G  K  T  M  A  T  E  A  P  V  E  A  T  E  I  P  S  V  A  A  A  E  T  V  E  K  Q  P  H  K  L  E  R  K  W  T  F  W  F  D  N  Q  S  K  P  K  Q  G  V  A  W  G  S  S  L  R  K  A  Y  T  F  E  T  V  E  E  F  W  S :   L  Y  D  Q  I  F  K  P  S  K  V  T  V  N  A  D  F  H  L  F  K  A  G  I  E  P  K  W  E  D  P  E  C  A  N  G  G  K  W  T  A  T  S  S  R  K  A  N  L  E  T  M  W  L  E  T  :  L  M  A  L  V  G  E  Q  F  D  E  S  E  D  I  C  G  V  V  A  S  V  R  R  S  Q  D  K  L  S  L  W  T  K  T  A  T  N  E  A  A  Q  :  M  G  I  G  R  K  W  K  E  I  I  D  A  E  K  I  S  Y  S  F  H  :  D  D  S  K  R  E  R  S  A  K  S  R  Y  T  V  *  N  F  F  I  V  W  N  *  H  H  S  L  S  S  L  P  I  L  K  L  Y  D  *  H  F  F  A  L  V  C  C  K  F  *  S  Y  *  N  L  F  E  L  D  V  C  L  D  V  L  H  *  R  F  C  S  D  V  C  Y  L  C  G  I  T  L  Y  L  K  *  T  L  W  E  K  A  *  S  I  H  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90690" stop="90925"/>
                    <exon start="91579" stop="91747"/>
                    <exon start="91880" stop="92005"/>
                    <exon start="93578" stop="93640"/>
                    <exon start="93747" stop="93794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTKGEDFDGKTMATEAPVEATEIPSVAAAETVEKQPHKLERKWTFWFDNQSKPKQGVAWGSSLRKAYTFETVEEFWSLYDQIFKPSKVTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLETMWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIIDAEKISYSFHDDSKRERSAKSRYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90664" e_stop="90925"/>
            <exon e_start="91579" e_stop="91747"/>
            <exon e_start="91880" e_stop="92005"/>
            <exon e_start="93578" e_stop="93640"/>
            <exon e_start="93747" e_stop="93969"/>
            <exon e_start="97283" e_stop="97305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.397" e_score="1.000"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90664" e_stop="90925" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.945">
            <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91579" e_stop="91747" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91880" e_stop="92005" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93578" e_stop="93640" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93747" e_stop="93969" e_length="223"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.397">
            <gDNA_intron_boundary i_start="93970" i_stop="97282" i_length="3313"/>
          </intron>
          <exon e_serial="6" e_score="0.652">
            <gDNA_exon_boundary e_start="97283" e_stop="97305" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90664" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90672" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90674" stop="90886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90681" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
              <exon start="97283" stop="97305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90681" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90683" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90689" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90693" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90695" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90700" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90712" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90823" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91911" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG : TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA : CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG : ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT : GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT : GATCCAAAAAAAAAAAACATGGA</gDNA_template>
            <first_frame> N  S  F  T  P  L  R  R  E  K  A  I  Q  K  E  R  I  L  T  G  K  Q  W  P  P  K  H  R  *  R  R  R  R  F  R  R  *  R  Q  R  R  L  W  R  S  S  R  I  S  *  R  G  S  G  R  S  G  S  I  T  S  L  N  R  N  K  A  S  L  G  E  V  L  F  E  K  L  I  L  L  K  L  L  R  N  S  G   : V  Y  M  I  K  Y  S  S  P  A  R  L  L  L  M  R  T  F  I  C  S  K  L  G  L  S  P  N  G  K  I  L  S  V  P  M  V  A  S  G  L  L  L  A  A  E  R  L  I  S  R  L  C  G  *  K  H :   *  W  H  W  S  A  S  N  L  M  S  Q  K  I  Y  V  G  W  L  L  V  C  V  G  V  R  I  N  F  P  C  G  L  R  Q  P  P  M  K  Q  L  R :   W  A  L  V  G  S  G  R  R  S  L  M  P  K  R  Y  P  I  V  S  M :   M  I  L  K  E  R  G  Q  L  R  A  D  I  L  C  E  I  S  L  S  C  G  I  N  T  T  P  *  A  L  Y  Q  Y  *  N  C  T  I  S  T  F  L  R  L  S  A  A  N  F  D  L  I  E  I  Y  S  N  L  M  Y  V  W  M  Y  C  I  K  D  F  V  L  M  F  V  :  D  P  K  K  K  N  M   </first_frame>
            <second_frame>  I  P  L  R  L  S  V  V  K  K  L  Y  K  R  R  G  F  *  R  E  N  N  G  H  R  S  T  G  R  G  D  G  D  S  V  G  S  G  S  G  D  C  G  E  A  A  A  *  A  R  E  E  V  D  V  L  V  R  *  P  V  *  T  E  T  R  R  R  L  G  K  F  S  S  K  S  L  Y  F  *  N  C  *  G  I  L  E  :  F  I  *  S  N  I  Q  A  Q  Q  G  Y  C  *  C  G  L  S  F  V  Q  S  W  D  *  A  Q  M  G  R  S  *  V  C  Q  W  W  Q  V  D  C  Y  *  Q  Q  K  G  *  S  R  D  Y  V  A  R  N   : T  D  G  I  G  R  R  A  I  *  *  V  R  R  Y  M  W  G  G  C  *  C  A  *  E  S  G  *  T  F  L  V  D  *  D  S  H  Q  *  S  S  S   : D  G  H  W  *  E  V  E  G  D  H  *  C  R  K  D  I  L  *  F  P   : *  *  F  *  K  R  E  V  S  *  E  P  I  Y  C  V  K  F  L  Y  R  V  E  L  T  P  L  L  K  L  F  T  N  T  E  I  V  R  L  A  L  F  C  A  C  L  L  Q  I  L  I  L  L  K  F  I  R  T  *  C  M  F  G  C  I  A  L  K  I  L  F  *  C  L  L :   I  Q  K  K  K  T  W  </second_frame>
            <third_frame>   F  L  Y  A  S  P  S  *  K  S  Y  T  K  G  E  D  F  D  G  K  T  M  A  T  E  A  P  V  E  A  T  E  I  P  S  V  A  A  A  E  T  V  E  K  Q  P  H  K  L  E  R  K  W  T  F  W  F  D  N  Q  S  K  P  K  Q  G  V  A  W  G  S  S  L  R  K  A  Y  T  F  E  T  V  E  E  F  W  S :   L  Y  D  Q  I  F  K  P  S  K  V  T  V  N  A  D  F  H  L  F  K  A  G  I  E  P  K  W  E  D  P  E  C  A  N  G  G  K  W  T  A  T  S  S  R  K  A  N  L  E  T  M  W  L  E  T  :  L  M  A  L  V  G  E  Q  F  D  E  S  E  D  I  C  G  V  V  A  S  V  R  R  S  Q  D  K  L  S  L  W  T  K  T  A  T  N  E  A  A  Q  :  M  G  I  G  R  K  W  K  E  I  I  D  A  E  K  I  S  Y  S  F  H  :  D  D  S  K  R  E  R  S  A  K  S  R  Y  T  V  *  N  F  F  I  V  W  N  *  H  H  S  L  S  S  L  P  I  L  K  L  Y  D  *  H  F  F  A  L  V  C  C  K  F  *  S  Y  *  N  L  F  E  L  D  V  C  L  D  V  L  H  *  R  F  C  S  D  V  C   : *  S  K  K  K  K  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90690" stop="90925"/>
                    <exon start="91579" stop="91747"/>
                    <exon start="91880" stop="92005"/>
                    <exon start="93578" stop="93640"/>
                    <exon start="93747" stop="93794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTKGEDFDGKTMATEAPVEATEIPSVAAAETVEKQPHKLERKWTFWFDNQSKPKQGVAWGSSLRKAYTFETVEEFWSLYDQIFKPSKVTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLETMWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIIDAEKISYSFHDDSKRERSAKSRYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90664" e_stop="90925"/>
            <exon e_start="91579" e_stop="91747"/>
            <exon e_start="91880" e_stop="92005"/>
            <exon e_start="93578" e_stop="93640"/>
            <exon e_start="93747" e_stop="93972"/>
            <exon e_start="97283" e_stop="97299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.397" e_score="1.000"/>
          <exon-only e_score="0.765"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90664" e_stop="90925" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.945">
            <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91579" e_stop="91747" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91880" e_stop="92005" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93578" e_stop="93640" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93747" e_stop="93972" e_length="226"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.397">
            <gDNA_intron_boundary i_start="93973" i_stop="97282" i_length="3310"/>
          </intron>
          <exon e_serial="6" e_score="0.765">
            <gDNA_exon_boundary e_start="97283" e_stop="97299" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90664" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90672" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90674" stop="90886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90677" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93972"/>
              <exon start="97283" stop="97299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90681" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90683" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90684" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90689" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="91953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90693" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90695" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90700" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90712" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90823" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91911" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG : TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA : CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG : ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT : GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATT : GATCCAAAAAAAAAAAA</gDNA_template>
            <first_frame> N  S  F  T  P  L  R  R  E  K  A  I  Q  K  E  R  I  L  T  G  K  Q  W  P  P  K  H  R  *  R  R  R  R  F  R  R  *  R  Q  R  R  L  W  R  S  S  R  I  S  *  R  G  S  G  R  S  G  S  I  T  S  L  N  R  N  K  A  S  L  G  E  V  L  F  E  K  L  I  L  L  K  L  L  R  N  S  G   : V  Y  M  I  K  Y  S  S  P  A  R  L  L  L  M  R  T  F  I  C  S  K  L  G  L  S  P  N  G  K  I  L  S  V  P  M  V  A  S  G  L  L  L  A  A  E  R  L  I  S  R  L  C  G  *  K  H :   *  W  H  W  S  A  S  N  L  M  S  Q  K  I  Y  V  G  W  L  L  V  C  V  G  V  R  I  N  F  P  C  G  L  R  Q  P  P  M  K  Q  L  R :   W  A  L  V  G  S  G  R  R  S  L  M  P  K  R  Y  P  I  V  S  M :   M  I  L  K  E  R  G  Q  L  R  A  D  I  L  C  E  I  S  L  S  C  G  I  N  T  T  P  *  A  L  Y  Q  Y  *  N  C  T  I  S  T  F  L  R  L  S  A  A  N  F  D  L  I  E  I  Y  S  N  L  M  Y  V  W  M  Y  C  I  K  D  F  V  L  M  F  V  I  :  D  P  K  K  K   </first_frame>
            <second_frame>  I  P  L  R  L  S  V  V  K  K  L  Y  K  R  R  G  F  *  R  E  N  N  G  H  R  S  T  G  R  G  D  G  D  S  V  G  S  G  S  G  D  C  G  E  A  A  A  *  A  R  E  E  V  D  V  L  V  R  *  P  V  *  T  E  T  R  R  R  L  G  K  F  S  S  K  S  L  Y  F  *  N  C  *  G  I  L  E  :  F  I  *  S  N  I  Q  A  Q  Q  G  Y  C  *  C  G  L  S  F  V  Q  S  W  D  *  A  Q  M  G  R  S  *  V  C  Q  W  W  Q  V  D  C  Y  *  Q  Q  K  G  *  S  R  D  Y  V  A  R  N   : T  D  G  I  G  R  R  A  I  *  *  V  R  R  Y  M  W  G  G  C  *  C  A  *  E  S  G  *  T  F  L  V  D  *  D  S  H  Q  *  S  S  S   : D  G  H  W  *  E  V  E  G  D  H  *  C  R  K  D  I  L  *  F  P   : *  *  F  *  K  R  E  V  S  *  E  P  I  Y  C  V  K  F  L  Y  R  V  E  L  T  P  L  L  K  L  F  T  N  T  E  I  V  R  L  A  L  F  C  A  C  L  L  Q  I  L  I  L  L  K  F  I  R  T  *  C  M  F  G  C  I  A  L  K  I  L  F  *  C  L  L  L :   I  Q  K  K  K  </second_frame>
            <third_frame>   F  L  Y  A  S  P  S  *  K  S  Y  T  K  G  E  D  F  D  G  K  T  M  A  T  E  A  P  V  E  A  T  E  I  P  S  V  A  A  A  E  T  V  E  K  Q  P  H  K  L  E  R  K  W  T  F  W  F  D  N  Q  S  K  P  K  Q  G  V  A  W  G  S  S  L  R  K  A  Y  T  F  E  T  V  E  E  F  W  S :   L  Y  D  Q  I  F  K  P  S  K  V  T  V  N  A  D  F  H  L  F  K  A  G  I  E  P  K  W  E  D  P  E  C  A  N  G  G  K  W  T  A  T  S  S  R  K  A  N  L  E  T  M  W  L  E  T  :  L  M  A  L  V  G  E  Q  F  D  E  S  E  D  I  C  G  V  V  A  S  V  R  R  S  Q  D  K  L  S  L  W  T  K  T  A  T  N  E  A  A  Q  :  M  G  I  G  R  K  W  K  E  I  I  D  A  E  K  I  S  Y  S  F  H  :  D  D  S  K  R  E  R  S  A  K  S  R  Y  T  V  *  N  F  F  I  V  W  N  *  H  H  S  L  S  S  L  P  I  L  K  L  Y  D  *  H  F  F  A  L  V  C  C  K  F  *  S  Y  *  N  L  F  E  L  D  V  C  L  D  V  L  H  *  R  F  C  S  D  V  C  Y   : *  S  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90690" stop="90925"/>
                    <exon start="91579" stop="91747"/>
                    <exon start="91880" stop="92005"/>
                    <exon start="93578" stop="93640"/>
                    <exon start="93747" stop="93794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTKGEDFDGKTMATEAPVEATEIPSVAAAETVEKQPHKLERKWTFWFDNQSKPKQGVAWGSSLRKAYTFETVEEFWSLYDQIFKPSKVTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLETMWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIIDAEKISYSFHDDSKRERSAKSRYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="96180" PGL_stop="94394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96180" e_stop="95849"/>
            <exon e_start="94679" e_stop="94394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.694" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96180" e_stop="95849" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.694">
            <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94679" e_stop="94394" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96180" stop="95849"/>
              <exon start="94679" stop="94554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96172" stop="95849"/>
              <exon start="94679" stop="94457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96166" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96127" stop="95849"/>
              <exon start="94679" stop="94408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96126" stop="95849"/>
              <exon start="94679" stop="94458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96101" stop="95849"/>
              <exon start="94679" stop="94472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96096" stop="95849"/>
              <exon start="94679" stop="94455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96095" stop="95849"/>
              <exon start="94679" stop="94455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96095" stop="95849"/>
              <exon start="94679" stop="94458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96050" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96010" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95973" stop="95849"/>
              <exon start="94679" stop="94394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95973" stop="95849"/>
              <exon start="94679" stop="94408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95973" stop="95849"/>
              <exon start="94679" stop="94408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95948" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95948" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95902" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94665" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGCTCCATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG : GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAAATGTTGTCTTCATGATTTCAATTTTTAACTTTTC</gDNA_template>
            <first_frame> L  S  S  I  I  I  T  F  I  F  K  N  I  I  Y  Y  *  *  S  *  E  K  R  L  F  E  W  Q  L  Q  V  Q  L  Q  Q  L  H  F  L  H  V  L  V  V  K  I  M  V  S  L  *  G  K  C  N  H  *  *  M  L  N  L  E  R  Q  *  D  Q  G  *  *  W  V  M  L  M  M  E  K  D  Y  L  H  Q  L  L  L  S  L  G  I  L  L  A  K  K  D  S  I  N  L  G  A  K  L  L  L  Y  T  L  R :   *  S  Q  S  F  A  S  Q  *  E  Q  I  R  S  K  G  K  D  *  F  D  W  Q  R  R  M  V  K  N  L  D  F  L  L  D  G  W  H  K  I  N  H  Y  C  Q  C  V  M  I  K  *  L  *  P  L  L  C  N  *  D  K  S  I  R  Y  N  F  N  F  M  Y  Y  S  N  I  Y  I  C  A  L  *  S  R  K  C  C  L  H  D  F  N  F  *  L  F </first_frame>
            <second_frame>  L  A  P  L  S  S  L  L  Y  S  R  I  L  F  T  T  S  S  P  K  K  K  G  Y  L  N  G  N  Y  K  F  N  C  N  N  F  I  F  F  M  C  *  W  *  R  L  W  *  V  Y  E  E  S  A  T  I  N  E  C  *  I  W  K  G  S  E  I  K  D  N  D  G  *  C  *  *  W  K  R  I  I  C  T  N  C  C  Y  H  *  E  Y  C  W  Q  K  K  I  Q  S  T  *  G  Q  S  Y  C  F  T  L  S   : G  N  H  R  V  L  Q  V  N  R  S  R  S  E  A  K  A  R  I  N  S  I  G  K  E  E  W  *  K  T  W  I  S  C  L  M  D  G  T  K  L  I  I  I  A  N  V  L  *  S  N  S  Y  S  L  F  C  V  I  E  T  N  Q  S  D  T  T  L  I  L  C  I  I  Q  T  Y  I  Y  V  L  C  S  L  E  N  V  V  F  M  I  S  I  F  N  F   </second_frame>
            <third_frame>   *  L  H  Y  H  H  F  Y  I  Q  E  Y  Y  L  L  L  V  V  L  R  K  K  V  I  *  M  A  I  T  S  S  I  A  T  T  S  F  S  S  C  V  S  G  E  D  Y  G  K  F  M  R  K  V  Q  P  L  M  N  V  K  F  G  K  A  V  R  S  R  I  M  M  G  N  V  N  D  G  K  G  L  F  A  P  I  V  V  I  T  R  N  I  V  G  K  K  R  F  N  Q  L  R  G  K  A  I  A  L  H  S  Q  :  V  I  T  E  F  C  K  S  I  G  A  D  Q  K  Q  R  Q  G  L  I  R  L  A  K  K  N  G  E  K  L  G  F  L  A  *  W  M  A  Q  N  *  S  L  L  P  M  C  Y  D  Q  I  A  I  A  S  F  V  *  L  R  Q  I  N  Q  I  Q  L  *  F  Y  V  L  F  K  H  I  Y  M  C  F  V  V  *  K  M  L  S  S  *  F  Q  F  L  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96103" stop="95849"/>
                    <exon start="94679" stop="94575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAITSSIATTSFSSCVSGEDYGKFMRKVQPLMNVKFGKAVRSRIMMGNVNDGKGLFAPIVVITRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADQKQRQGLIRLAKKNGEKLGFLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="110177" PGL_stop="110869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110177" e_stop="110869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="110177" e_stop="110869" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110177" stop="110869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCAGGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</gDNA_template>
            <first_frame> M  L  V  A  K  E  R  T  L  R  I  N  Q  A  P  Y  L  S  L  K  Y  L  C  T  K  L  E  E  K  N  R  Y  F  Y  F  W  T  K  D  C  C  Q  L  Q  K  K  L  G  H  L  C  S  R  G  R  E  P  M  K  Y  K  T  *  F  T  L  S  A  N  E  N  Y  T  K  R  T  K  T  E  S  L  D  A  I  R  M  I  R  F  S  S  *  R  V  H  T  M  Q  T  G  N  N  N  E  *  T  M  F  F  C  I  P  I  A  V  F  S  R  P  V  L  Q  K  A  A  V  G  D  F  G  F  L  L  S  S  L  L  P  E  L  F  *  S  I  Y  V  A  L  Y  N  L  Q  C  K  D  K  *  F  E  S  *  V  S  R  S  Q  K  *  Y  L  L  H  E  Y  N  P  I  N  P  L  V  F  V  M  Q  I  *  S  P  E  L  L  S  N  F  Y  A  K  I  I  P  F  S  L  Y  F  L  V  L  D  K  L  Q  A  Y  G  I  T  I  G  S  I  R  N  Q  N  L  I  S  F  S </first_frame>
            <second_frame>  C  W  W  P  K  K  E  L  F  E  S  I  K  L  L  T  C  L  *  S  I  F  V  L  N  *  K  K  K  I  G  I  F  I  F  G  P  R  T  A  V  N  Y  K  R  S  *  A  I  S  V  L  E  V  E  S  L  *  N  I  K  L  N  L  H  Y  L  Q  M  K  I  I  P  N  E  Q  R  Q  K  V  L  M  L  *  G  *  L  D  F  P  L  E  E  F  I  Q  C  K  Q  G  T  T  M  S  E  P  C  F  F  A  F  L  *  R  F  F  L  D  Q  C  F  R  K  L  L  L  G  T  L  G  S  Y  Y  H  H  C  C  L  N  Y  F  K  A  Y  T  L  H  C  T  I  Y  N  A  K  T  S  D  L  S  L  K  Y  P  D  H  R  S  S  I  S  Y  M  N  I  I  P  *  T  P  *  Y  L  L  C  K  Y  N  P  L  N  S  L  V  I  F  T  Q  K  *  S  P  S  P  Y  I  F  L  C  *  T  N  F  R  H  M  A  *  P  L  V  P  S  E  I  R  I  *  S  H  S   </second_frame>
            <third_frame>   V  G  G  Q  R  K  N  S  S  N  Q  S  S  S  L  L  V  F  K  V  S  L  Y  *  I  R  R  K  K  *  V  F  L  F  L  D  Q  G  L  L  S  I  T  K  E  A  R  P  S  L  F  *  R  *  R  A  Y  E  I  *  N  L  I  Y  I  I  C  K  *  K  L  Y  Q  T  N  K  D  R  K  S  *  C  Y  K  D  D  *  I  F  L  L  K  S  S  Y  N  A  N  R  E  Q  Q  *  V  N  H  V  F  L  H  S  Y  S  G  F  F  *  T  S  A  S  E  S  C  C  W  G  L  W  V  L  I  I  I  T  V  A  *  I  I  L  K  H  I  R  C  I  V  Q  S  T  M  Q  R  Q  V  I  *  V  L  S  I  Q  I  T  E  V  V  S  L  T  *  I  *  S  H  K  P  L  S  I  C  Y  A  N  I  I  P  *  T  P  *  *  F  L  R  K  N  N  P  L  L  L  I  F  S  C  V  R  Q  T  S  G  I  W  H  N  H  W  F  H  Q  K  S  E  S  D  L  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0008K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="122413" PGL_stop="126619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122413" e_stop="123115"/>
            <exon e_start="125547" e_stop="126619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.953"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="122413" e_stop="123115" e_length="703"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="125547" e_stop="126619" e_length="1073"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122413" stop="122901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122415" stop="122983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122416" stop="122819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122416" stop="122810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122416" stop="122809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122416" stop="122735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122423" stop="122880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122436" stop="123091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122436" stop="122974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122808" stop="123115"/>
              <exon start="125547" stop="125950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554409" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122849" stop="123115"/>
              <exon start="125547" stop="125964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122879" stop="123115"/>
              <exon start="125547" stop="125960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122905" stop="123115"/>
              <exon start="125547" stop="125937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123096" stop="123115"/>
              <exon start="125547" stop="125843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125922" stop="126583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125995" stop="126619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG : TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCCATTTGCTTTGTTCTGTAACAGTAAAAGAATTACAACATGCATATGATATGCTATCAACCAAATACAGGTTCCCCAGATGAAAATCTTATTGTCTTTTCTTCTCTCGCGGAGAAGAGAATACAACACACTGCACACATAAATCATGCAAAAAAACAATCAATTCTTTACACAAACATCAATCCAAATGTATTTAGGTACTGCACCTTCTCTGTTTATATGATATTGACTTCATCGAGCACGACTTCATCTGCAGCTCTATGTTGATTGTAATACACAGCTGATCCATTTACTGATGTTGTTTTTGCTGAAACCATCCAGTTAGAGAGGCTGGCATCTACTGAAATATCATGTCCTTGAAGCTTAGACTTAGGCTTAGAGTTGTATTTGGGATTTAGGTCCACACAATGGCTGTTTACTGGTTTTCCATCCAATTTGATTATGTTTTCCTTCTGATGCTTCACTTGTTGTGCTCCTCTTGCTTTAACTGCTTTCCATTGAGTGAGATTTTCAACTGGAAGAAGCACAGAACTCCTATGATTTCGACTTACTACATTCGATTCATCTGTGTTCAGTTTTTCAACATTTCCATACTTGTTTTCTGCTTCAATATGCAAAGAATCTGCAGATTCATCACCACCAACATCATCATCATCAT</gDNA_template>
            <first_frame> I  L  Y  F  F  F  I  F  F  F  F  F  F  S  N  L  I  I  Q  I  Q  G  F  L  I  H  C  Y  T  N  S  S  T  F  S  I  F  L  H  I  Q  R  R  K  I  N  K  K  A  N  S  *  K  L  N  Q  Y  K  D  *  L  F  S  F  F  *  Y  I  P  I  *  F  Y  E  D  L  K  I  K  N  L  Q  I  P  C  F  D  I  I  W  E  V  G  F  C  G  L  *  R  *  C  I  K  S  *  N  F  L  V  K  I  *  A  F  *  G  F  L  L  K  W  G  C  W  F  C  I  G  I  I  *  F  *  G  C  L  G  K  G  I  *  K  E  D  L  F  F  V  V  V  V  V  C  L  E  E  W  I  L  K  V  I  K  I  *  K  G  R  K  F  S  M  L  I  V  W  K  L  F  L  I  L  C  *  M  V  E  K  M  K  M  M  S  L  K  H  C  C  L  L  G  K  V  D  C  Q  K  R  *  L  S  Q  R  G  K  F  S  G  M  I  Q  M  G  I  N  L  L  R  F  W  N  L  S  Q   : V  M  Q  V  T  R  M  K  M  I  Q  I  L  A  F  V  G  *  C  S  S  Y  *  M  H  Y  Q  T  N  C  E  S  R  M  L  N  L  L  R  F  T  S  L  *  H  T  I  T  A  V  F  K  R  V  D  C  L  *  F  G  S  S  Y  L  S  Q  M  K  R  P  F  L  V  E  H  N  Q  I  E  R  I  T  S  S  I  V  *  C  I  *  V  L  R  V  I  V  D  N  I  Q  N  P  S  G  F  L  V  F  F  C  L  I  I  M  Y  M  S  A  E  P  Y  R  *  *  L  C  S  S  K  N  D  F  I  T  S  L  I  L  C  P  F  A  L  F  C  N  S  K  R  I  T  T  C  I  *  Y  A  I  N  Q  I  Q  V  P  Q  M  K  I  L  L  S  F  L  L  S  R  R  R  E  Y  N  T  L  H  T  *  I  M  Q  K  N  N  Q  F  F  T  Q  T  S  I  Q  M  Y  L  G  T  A  P  S  L  F  I  *  Y  *  L  H  R  A  R  L  H  L  Q  L  Y  V  D  C  N  T  Q  L  I  H  L  L  M  L  F  L  L  K  P  S  S  *  R  G  W  H  L  L  K  Y  H  V  L  E  A  *  T  *  A  *  S  C  I  W  D  L  G  P  H  N  G  C  L  L  V  F  H  P  I  *  L  C  F  P  S  D  A  S  L  V  V  L  L  L  L  *  L  L  S  I  E  *  D  F  Q  L  E  E  A  Q  N  S  Y  D  F  D  L  L  H  S  I  H  L  C  S  V  F  Q  H  F  H  T  C  F  L  L  Q  Y  A  K  N  L  Q  I  H  H  H  Q  H  H  H  H  H </first_frame>
            <second_frame>  F  C  I  F  F  L  F  F  F  F  F  F  F  Q  I  *  S  Y  K  F  K  G  F  *  F  I  V  I  P  I  L  L  L  F  P  F  S  F  T  F  R  E  G  K  L  T  K  K  P  I  L  E  S  *  T  N  T  K  I  S  F  L  A  F  F  D  T  Y  P  Y  S  F  M  R  I  *  R  S  R  I  Y  K  F  L  V  L  I  S  F  G  R  W  V  F  V  G  Y  E  D  N  A  L  N  L  E  I  F  L  *  R  F  E  L  F  E  V  F  C  *  N  G  V  V  G  F  A  L  E  S  Y  D  F  E  V  V  *  V  K  E  F  R  R  K  I  C  F  L  L  L  L  L  C  V  W  R  N  G  Y  *  K  *  *  R  F  K  R  G  E  N  S  V  C  *  *  C  G  S  S  S  *  F  C  V  E  W  W  K  R  *  R  *  *  V  *  S  I  V  A  F  *  E  R  W  I  V  K  K  D  S  *  A  K  E  E  S  S  V  E  *  Y  K  W  E  *  T  Y  *  G  F  G  I  *  A  K  :  *  C  K  *  L  G  *  R  *  F  R  F  L  H  L  *  D  N  V  V  L  I  K  C  I  T  K  P  I  V  S  Q  E  C  *  I  S  F  D  S  H  L  Y  S  I  Q  *  Q  Q  F  L  R  E  S  T  V  S  N  L  V  Q  V  I  *  A  K  *  N  D  P  F  S  L  N  T  I  R  *  R  E  *  L  P  L  L  Y  N  V  Y  E  C  F  E  L  *  *  I  T  Y  R  T  L  Q  V  F  L  F  S  F  A  *  L  *  C  I  *  V  L  S  L  T  D  D  D  F  V  L  A  R  M  I  L  *  H  L  *  F  F  V  H  L  L  C  S  V  T  V  K  E  L  Q  H  A  Y  D  M  L  S  T  K  Y  R  F  P  R  *  K  S  Y  C  L  F  F  S  R  G  E  E  N  T  T  H  C  T  H  K  S  C  K  K  T  I  N  S  L  H  K  H  Q  S  K  C  I  *  V  L  H  L  L  C  L  Y  D  I  D  F  I  E  H  D  F  I  C  S  S  M  L  I  V  I  H  S  *  S  I  Y  *  C  C  F  C  *  N  H  P  V  R  E  A  G  I  Y  *  N  I  M  S  L  K  L  R  L  R  L  R  V  V  F  G  I  *  V  H  T  M  A  V  Y  W  F  S  I  Q  F  D  Y  V  F  L  L  M  L  H  L  L  C  S  S  C  F  N  C  F  P  L  S  E  I  F  N  W  K  K  H  R  T  P  M  I  S  T  Y  Y  I  R  F  I  C  V  Q  F  F  N  I  S  I  L  V  F  C  F  N  M  Q  R  I  C  R  F  I  T  T  N  I  I  I  I   </second_frame>
            <third_frame>   F  V  F  F  F  Y  F  F  F  F  F  F  F  K  S  N  H  T  N  S  R  V  F  D  S  L  L  Y  Q  F  F  Y  F  F  H  F  P  S  H  S  E  K  E  N  *  Q  K  S  Q  F  L  K  A  K  P  I  Q  R  L  A  F  *  L  F  L  I  H  T  H  I  V  L  *  G  F  E  D  Q  E  S  T  N  S  L  F  *  Y  H  L  G  G  G  F  L  W  V  M  K  I  M  H  *  I  L  K  F  S  C  K  D  L  S  F  L  R  F  F  V  E  M  G  L  L  V  L  H  W  N  H  M  I  L  R  L  F  R  *  R  N  L  E  G  R  F  V  F  C  C  C  C  C  V  F  G  G  M  D  T  K  S  N  K  D  L  K  G  E  K  I  Q  Y  V  D  S  V  E  A  L  P  N  S  V  L  N  G  G  K  D  E  D  D  E  S  K  A  L  L  P  S  R  K  G  G  L  S  K  K  I  A  K  P  K  R  K  V  Q  W  N  D  T  N  G  N  K  L  T  E  V  L  E  F  E  P  S :   D  A  S  D  S  D  E  D  D  S  D  S  C  I  C  R  I  M  *  F  L  L  N  A  L  P  N  Q  L  *  V  K  N  V  E  S  P  S  I  H  I  F  I  A  Y  N  N  S  S  F  *  E  S  R  L  S  L  I  W  F  K  L  S  E  P  N  E  T  T  L  S  R  *  T  Q  S  D  R  E  N  N  F  L  Y  C  I  M  Y  M  S  A  S  S  Y  S  R  *  H  T  E  P  F  R  F  S  C  F  L  L  L  N  Y  N  V  Y  E  C  *  A  L  Q  M  M  T  L  F  *  Q  E  *  F  Y  N  I  F  N  S  L  S  I  C  F  V  L  *  Q  *  K  N  Y  N  M  H  M  I  C  Y  Q  P  N  T  G  S  P  D  E  N  L  I  V  F  S  S  L  A  E  K  R  I  Q  H  T  A  H  I  N  H  A  K  K  Q  S  I  L  Y  T  N  I  N  P  N  V  F  R  Y  C  T  F  S  V  Y  M  I  L  T  S  S  S  T  T  S  S  A  A  L  C  *  L  *  Y  T  A  D  P  F  T  D  V  V  F  A  E  T  I  Q  L  E  R  L  A  S  T  E  I  S  C  P  *  S  L  D  L  G  L  E  L  Y  L  G  F  R  S  T  Q  W  L  F  T  G  F  P  S  N  L  I  M  F  S  F  *  C  F  T  C  C  A  P  L  A  L  T  A  F  H  *  V  R  F  S  T  G  R  S  T  E  L  L  *  F  R  L  T  T  F  D  S  S  V  F  S  F  S  T  F  P  Y  L  F  S  A  S  I  C  K  E  S  A  D  S  S  P  P  T  S  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122826" stop="123115"/>
                    <exon start="125547" stop="125604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLEGRFVFCCCCCVFGGMDTKSNKDLKGEKIQYVDSVEALPNSVLNGGKDEDDESKALLPSRKGGLSKKIAKPKRKVQWNDTNGNKLTEVLEFEPSDASDSDEDDSDSCICRIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126360" stop="126617"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHTMAVYWFSIQFDYVFLLMLHLLCSSCFNCFPLSEIFNWKKHRTPMISTYYIRFICVQFFNISILVFCFNMQRICRFITTNIIII</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125989" stop="126228"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNYNMHMICYQPNTGSPDENLIVFSSLAEKRIQHTAHINHAKKQSILYTNINPNVFRYCTFSVYMILTSSSTTSSAALC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="126530" PGL_stop="125933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126530" e_stop="125933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="126530" e_stop="125933" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126530" stop="125933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126530" stop="125939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAAATCATT</gDNA_template>
            <first_frame> T  D  E  S  N  V  V  S  R  N  H  R  S  S  V  L  L  P  V  E  N  L  T  Q  W  K  A  V  K  A  R  G  A  Q  Q  V  K  H  Q  K  E  N  I  I  K  L  D  G  K  P  V  N  S  H  C  V  D  L  N  P  K  Y  N  S  K  P  K  S  K  L  Q  G  H  D  I  S  V  D  A  S  L  S  N  W  M  V  S  A  K  T  T  S  V  N  G  S  A  V  Y  Y  N  Q  H  R  A  A  D  E  V  V  L  D  E  V  N  I  I  *  T  E  K  V  Q  Y  L  N  T  F  G  L  M  F  V  *  R  I  D  C  F  F  A  *  F  M  C  A  V  C  C  I  L  F  S  A  R  E  E  K  T  I  R  F  S  S  G  E  P  V  F  G  *  *  H  I  I  C  M  L  *  F  F  Y  C  Y  R  T  K  Q  M  D  K  E  L  K  M  L  *  N  H  </first_frame>
            <second_frame>  Q  M  N  R  M  *  *  V  E  I  I  G  V  L  C  F  F  Q  L  K  I  S  L  N  G  K  Q  L  K  Q  E  E  H  N  K  *  S  I  R  R  K  T  *  S  N  W  M  E  N  Q  *  T  A  I  V  W  T  *  I  P  N  T  T  L  S  L  S  L  S  F  K  D  M  I  F  Q  *  M  P  A  S  L  T  G  W  F  Q  Q  K  Q  H  Q  *  M  D  Q  L  C  I  T  I  N  I  E  L  Q  M  K  S  C  S  M  K  S  I  S  Y  K  Q  R  R  C  S  T  *  I  H  L  D  *  C  L  C  K  E  L  I  V  F  L  H  D  L  C  V  Q  C  V  V  F  S  S  P  R  E  K  K  R  Q  *  D  F  H  L  G  N  L  Y  L  V  D  S  I  S  Y  A  C  C  N  S  F  T  V  T  E  Q  S  K  W  T  K  N  *  R  C  Y  K  I  I </second_frame>
            <third_frame>   R  *  I  E  C  S  K  S  K  S  *  E  F  C  A  S  S  S  *  K  S  H  S  M  E  S  S  *  S  K  R  S  T  T  S  E  A  S  E  G  K  H  N  Q  I  G  W  K  T  S  K  Q  P  L  C  G  P  K  S  Q  I  Q  L  *  A  *  V  *  A  S  R  T  *  Y  F  S  R  C  Q  P  L  *  L  D  G  F  S  K  N  N  I  S  K  W  I  S  C  V  L  Q  S  T  *  S  C  R  *  S  R  A  R  *  S  Q  Y  H  I  N  R  E  G  A  V  P  K  Y  I  W  I  D  V  C  V  K  N  *  L  F  F  C  M  I  Y  V  C  S  V  L  Y  S  L  L  R  E  R  R  K  D  N  K  I  F  I  W  G  T  C  I  W  L  I  A  Y  H  M  H  V  V  I  L  L  L  L  Q  N  K  A  N  G  Q  R  I  K  D  V  I  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126530" stop="126177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDESNVVSRNHRSSVLLPVENLTQWKAVKARGAQQVKHQKENIIKLDGKPVNSHCVDLNPKYNSKPKSKLQGHDISVDASLSNWMVSAKTTSVNGSAVYYNQHRAADEVVLDEVNII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="128172" PGL_stop="126587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128172" e_stop="127999"/>
            <exon e_start="127458" e_stop="127388"/>
            <exon e_start="126924" e_stop="126587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128172" e_stop="127999" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.996">
            <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127458" e_stop="127388" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="126924" e_stop="126587" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128172" stop="127999"/>
              <exon start="127458" stop="127388"/>
              <exon start="126924" stop="126587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128166" stop="127999"/>
              <exon start="127458" stop="127388"/>
              <exon start="126924" stop="126658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128166" stop="127999"/>
              <exon start="127458" stop="127388"/>
              <exon start="126924" stop="126734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128163" stop="127999"/>
              <exon start="127458" stop="127388"/>
              <exon start="126924" stop="126809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAA : GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAG : GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAGAAGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTG</gDNA_template>
            <first_frame> S  K  I  P  S  P  F  F  S  V  D  F  F  F  F  G  G  K  S  R  K  Q  R  S  *  K  Q  K  Q  K  Q  K  Q  M  G  C  F  L  G  C  F  G  F  T  N  K  K  Q  K  R  I  K  P  C  N  K  F  Q  :  V  H  Q  K  Y  V  P  L  D  S  E  K  E  I  V  V  N  S  A  N  S  E  P  R :   D  K  P  K  E  S  S  K  R  K  V  K  K  K  V  S  F  N  L  D  V  K  T  Y  E  R  I  Q  D  D  E  N  N  T  T  Y  F  S  E  E  E  E  K  T  N  K  Q  E  T  A  K  A  S  M  S  M  Y  P  S  S  H  R  Y  Y  N  C  N  N  S  Y  D  E  E  E  D  E  I  I  L  E  D  S  D  I  D  D  L  D  D  D  E  E  E  E  D  Y  G  V  S  D  D  D  D  D  D  D  V  G  G  D  E  S  </first_frame>
            <second_frame>  L  K  F  L  L  H  S  S  L  S  I  F  S  F  L  G  E  N  Q  E  N  R  D  L  E  N  K  N  K  N  K  N  K  W  D  V  F  L  D  V  L  V  L  Q  T  R  N  K  S  V  *  S  L  V  T  S  F  K :   C  I  K  S  M  Y  H  W  I  L  R  R  K  L  L  *  I  Q  Q  I  L  S  P   : G  I  S  Q  K  N  H  Q  N  V  R  *  K  R  K  *  V  S  I  W  M  *  R  L  T  R  E  Y  K  M  M  K  T  T  Q  H  I  S  Q  R  K  R  R  R  Q  I  N  K  K  Q  P  K  Q  V  C  L  C  T  L  R  V  I  D  T  I  T  A  T  I  A  T  M  R  R  K  T  R  *  Y  L  R  T  V  I  S  M  I  *  M  T  M  K  K  K  K  T  M  V  L  V  M  T  M  M  M  M  M  L  V  V  M  N  L </second_frame>
            <third_frame>   *  N  S  F  S  I  L  L  C  R  F  F  L  F  W  G  K  I  K  K  T  E  I  L  K  T  K  T  K  T  K  T  N  G  M  F  S  W  M  F  W  F  Y  K  Q  E  T  K  A  Y  K  A  L  *  Q  V  S   : S  A  S  K  V  C  T  T  G  F  *  E  G  N  C  C  K  F  S  K  F  *  A  Q  :  G  *  A  K  R  I  I  K  T  *  G  E  K  E  S  E  F  Q  F  G  C  E  D  L  R  E  N  T  R  *  *  K  Q  H  N  I  F  L  R  G  R  G  E  D  K  *  T  R  N  S  Q  S  K  Y  V  Y  V  P  F  E  S  S  I  L  *  L  Q  Q  *  L  R  *  G  G  R  R  D  N  T  *  G  Q  *  Y  R  *  S  R  *  R  *  R  R  R  R  L  W  C  *  *  *  R  *  *  *  *  C  W  W  *  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128097" stop="127999"/>
                    <exon start="127458" stop="127388"/>
                    <exon start="126924" stop="126588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKQKQKQMGCFLGCFGFTNKKQKRIKPCNKFQVHQKYVPLDSEKEIVVNSANSEPRDKPKESSKRKVKKKVSFNLDVKTYERIQDDENNTTYFSEEEEKTNKQETAKASMSMYPSSHRYYNCNNSYDEEEDEIILEDSDIDDLDDDEEEEDYGVSDDDDDDDVGGDES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 523 chains have been computed
$ 
$ memory statistics:
$ 892664 bytes spliced alignments in total
$ 245 spliced alignments have been stored
$ 3643 bytes was the average size of a spliced alignment
$ 33960 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1698 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 566 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 09:13:01
-->
