<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 09:13:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325885" ref_strand="+" ref_description="SGN-U325885        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: Extensin-like(evalue: 1e-06, score=22.3)">
      <seq>acaatttggcccttttgacctctcatacaaacaatattgttaaaagaataggaaaagaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataaccaaagcatttttggtggaagcaaaccaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagacttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacaagtggaaataagtgctcaaaagagaccgataatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10079" stop="6137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9779" g_stop="9516" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9407" g_stop="9357" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="315" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9247" g_stop="9131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="432" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7677" g_stop="7597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="513" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7521" g_stop="7423" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="612" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6656" g_stop="6437" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="832" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U325885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9779" e_stop="9516"/>
          <exon e_start="9407" e_stop="9357"/>
          <exon e_start="9247" e_stop="9131"/>
          <exon e_start="7677" e_stop="7597"/>
          <exon e_start="7521" e_stop="7423"/>
          <exon e_start="6656" e_stop="6437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</genome_strand>
        <mrna_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316408" ref_strand="+" ref_description="SGN-U316408        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | succinate-semialdehyde dehydrogenase (SSADH1), similar to succinate-semialdehyde dehydrogenase (NADP+) (SSDH) (Escherichia coli) SWISS-PROT:P25526; identical to succinic semialdehyde dehydrogenase mRNA, nuclear gene encoding mitochondrial protein GI:6684441; contains TIGRfam profile TIGR01780:succinic semialdehyde dehydrogenase; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:29887103-29892225 REVERSE | Aliases: None(evalue: 0, score=777) genbank/nr: gi|15219379|ref|NP_178062.1| succinate-semialdehyde dehydrogenase, putative (SSDH) [Arabidopsis thaliana] gi|6684442|gb|AAF23590.1| succinic semialdehyde dehydrogenase [Arabidopsis thaliana] gi|15810165|gb|AAL07226.1| putative succinic semialdehyde dehydrogenase gabD [Arabidopsis thaliana] gi|16226915|gb|AAL16297.1| At1g79440/T8K14_14 [Arabidopsis thaliana](evalue: 0, score=777)">
      <seq>ggatatatagtttgcgttgactactattgaggtagtaggtagcatctattatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaagtgaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="10752" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11050" g_stop="11164" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11929" g_stop="13637" g_length="1709"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="1824" r_length="1709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1825" polyA_stop="1839"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U316408" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1824</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11050" e_stop="11164"/>
          <exon e_start="11929" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>GGATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316407" ref_strand="-" ref_description="SGN-U316407        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | succinate-semialdehyde dehydrogenase (SSADH1), similar to succinate-semialdehyde dehydrogenase (NADP+) (SSDH) (Escherichia coli) SWISS-PROT:P25526; identical to succinic semialdehyde dehydrogenase mRNA, nuclear gene encoding mitochondrial protein GI:6684441; contains TIGRfam profile TIGR01780:succinic semialdehyde dehydrogenase; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:29887103-29892225 REVERSE | Aliases: None(evalue: 9e-45, score=176) genbank/nr: gi|4835765|gb|AAD30232.1| Is a member of the PF|00171 aldehyde dehydrogenase family.  ESTs gb|T21534, gb|N65241 and gb|AA395614 come from this gene. [Arabidopsis thaliana] (evalue: 5e-43, score=176)">
      <seq>taaagctacttcaagatctgcgtcatcaaagatgatgcaaggtgcattaccgcctagctcaagagacacctttttagcggtggcagcagcaccttccatcaattttttcccaaccttggttgaacctgtgaatgtaatttttcttacctgtgggcttgcaagcagtgcgtctccaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaagggtgtgagttcagacggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtaatcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacactttgtgtgtctgtcgtcatcagtcgcactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="13206" stop="11746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12906" g_stop="12546" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12269" g_stop="12046" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="585" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U316407" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12906" e_stop="12546"/>
          <exon e_start="12269" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</genome_strand>
        <mrna_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAGCGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335654" ref_strand="+" ref_description="SGN-U335654        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | succinate-semialdehyde dehydrogenase (SSADH1), similar to succinate-semialdehyde dehydrogenase (NADP+) (SSDH) (Escherichia coli) SWISS-PROT:P25526; identical to succinic semialdehyde dehydrogenase mRNA, nuclear gene encoding mitochondrial protein GI:6684441; contains TIGRfam profile TIGR01780:succinic semialdehyde dehydrogenase; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:29887103-29892225 REVERSE | Aliases: None(evalue: 4e-90, score=328) genbank/nr: gi|4835765|gb|AAD30232.1| Is a member of the PF|00171 aldehyde dehydrogenase family.  ESTs gb|T21534, gb|N65241 and gb|AA395614 come from this gene. [Arabidopsis thaliana] (evalue: 3e-88, score=328)">
      <seq>atatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="12162" stop="13695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12462" g_stop="12792" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="12865" i_length="73">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12866" g_stop="13395" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="861" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U335654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12462" e_stop="12792"/>
          <exon e_start="12866" e_stop="13395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</genome_strand>
        <mrna_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG.........................................................................GTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322104" ref_strand="+" ref_description="SGN-U322104        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:7754244-7755951 REVERSE | Aliases: T9E8.70, T9E8_70(evalue: 1e-123, score=440) genbank/nr: conserved(evalue: 9e-145, score=516)">
      <seq>ttagagagggtttttggtggaaatatgttgaagttgcctaaacggaatttgccatggctgcagctgagacgattatcaacggcgattcgacaaactgtagaagatgaaggcgactggttttattcatcggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccaaaccagaaaactgttattgggggaaaacagagaattggcttcaaaagaggtatgaaaagatgtatccaagagatgaacaggaagggaatttcaggattcttggttaccaatggcggaatcttcactttaatgaggagactcgtcaaagcacagttaaaataatggctgcttatagggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggctaccattgcatcttgtagattcgatcttgaaagtgcagtttgtgggagaaaaccaatgaaaattttatgcattgggcatggcggaggaagcataccgttgtttttggctagtaaaatccaaggtgctgaagtgcacatagctgaaatcgaccctgtggtaatctcagcctcagttcaagcaatggggttcccatcttactcagttatgactccatctggtagccgtgcacactcaactcctgatcttatccaagaagttcaatggaaaggcattcatgagaggattcaattacatgaatcagatgctgagaaattcctcctcgagaacaaaaatctttatgatcttgttttcatagacgcatatgacggggaagatatctttcctcacaccctatgggatccacactctccattcctcaatgctctcgcagaccaacttcaccctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="14042" stop="17544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14342" g_stop="14575" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14671" g_stop="14899" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="463" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15433" g_stop="15585" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="616" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15586" i_stop="16544" i_length="959">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16545" g_stop="17244" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="1316" r_length="700" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1317" polyA_stop="1350"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U322104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1316</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14342" e_stop="14575"/>
          <exon e_start="14671" e_stop="14899"/>
          <exon e_start="15433" e_stop="15585"/>
          <exon e_start="16545" e_stop="17244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAGGTTTGAACTGAGTGCTGTTTTTCCTGCCTTTGCTGCTCTTTAAGTCTCTGAATTTGAGCATTTTTTTGGGTGACATTGTGTATTTGACAAAGTATGAACGGGAAATCATTATCCAATCCTTCTTTTCACTGGATGTGATATTAAAGACACATACTTTCTCCCTTTTATGTAAAATCTTATCTTGAATGTAAATTTTGGGGAGGTAATCTGACATGAGATGATGCAGAAAACTCAAGATTATGTATTTCTTCAACTATAGTTGATATCCTCTGGATGACCTCAAATACAATATTGACTGAATTTCTTTCAAGTTTCTGAGGGAACTTCCATTTTCTCATAGATTATGTACAGGATGTGAGGTCTGCTGGAAGAACAAATAATAAAAATGAGTGTTTTTTTAACTACAGAAATTTCATTACTGTATGCTTGGATCGCTAGGACAAGGGGCTTAAATAATGAAAGATTGTGTGTATCATACCACAAATTCATCCCTGTAGTTCTTGTTTGGTTCACATAGATGTGGTAAATTTGGATATGCTGTTGTTCGTAGTAGTAGAATTTGAAGCACTGCTACTCCAAATATTACAAAGTTCTGAAGCTCACTCTTGGCTTTTTGGATAAAGTTGTAAAATGAACACCTTGGATAGCTTGTATTCTTGCATTGCATATCTCCCAGTCAGTGTTTCCTTACTATCCACTTGGATATATTTACGAATTTCAGTGATAATAGTCATAGTACTTCTGTCCAACATTTTCTCGGAGAAAAGATATGAATATCAGATTACCTAGAATTGGAACTACTTTGTTCTCTGCTTTTTGAATCCCTTCAATGGCATTGCAACTTCAATTTCTAGTTTGACAGACTTGACACTCGTTCCGAAACTAACTGTTGCTTGTCTTAATTTGTTGTACCAATTTGCGAAATGTCTGTTTTGGAATTAACCTCTTCGATGTATCAGGTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</genome_strand>
        <mrna_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA...............................................................................................GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331244" ref_strand="+" ref_description="SGN-U331244        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | 33 kDa secretory protein-related, contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins | chr1:1231577-1234005 FORWARD | Aliases: F19P19.1, F19P19_1(evalue: 4e-17, score=85.1) genbank/nr: At1g04520(evalue: 2e-15, score=85.1)">
      <seq>tccaaaaagctcaggttgaatgtggtagctcaatttctggccaaatatttcttcataagtgctttgttagttataattattatccaaatggggctcccacaaaatcatcatcatcatcatcttcatactggtctccatctccttcagcagggacaggccaaaacacagggaaaacagtggctataatactaggaggagcagcaggagttggttttctagtcatttgcatgctctttgcaaggaaccaaatgaagaaacatgatgattattgaagggatcagctgtgtattattattataaaaggctggcaaaagctttttatgaggtggattctttccttgtcaagattttctacctagaaggaaaatatattttcttggaaattcctgaaaaaaagtgagggagtttgtgagctgtaattcttggaattattaggtaaaaagagaaaaacaaaaatactattttggggacataaatttttggagaaatgatgtaacaatacatgttttttttgtcaactatgaagaagattggcaagagcattataatgtttttttggcctttttctcctatggccatgtgcatgttgtatcttttctctttgtctctgaataattgtttcacccttttttttcttcttctaaagttttttactttttaaaaacnaaaaaaaaaaaaaaaaaaaaaagaaaggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="26984" stop="24952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26684" g_stop="26535" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26534" i_stop="25983" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25982" g_stop="25869" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="264" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25868" i_stop="25651" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25650" g_stop="25252" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="663" r_length="399" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="692"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U331244" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26684" e_stop="26535"/>
          <exon e_start="25982" e_stop="25869"/>
          <exon e_start="25650" e_stop="25252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAGGTACTTTTCCTTGAATTGACTGCTTAGCTAGCGCTTAGTCATAAATTTCAAAAATTAATCTTTGAATATCTGTTTGACCATATATTTTGGATCAGATTTTGAAAATCTGTCTTAAAAAGATTTTCAAGTTCCAAAAACTGCTCCAGACCATATTTGTTTAGTCCTAGTCAAAAAATTCATGCTTAAGCACAAAAAGAGTTTCAGAAACTTAACTTGTCGAGTTTCAACTTCAAAATTTATGATCAAGAGCTAAACATGCTAAGACTGTGACAATGGTTTCTGGTTTGGTTTGCTAGTGTTAACACTCTAATCAAGATTTTGTCTTTCTTAGAACTTTTGAGCTGTCTACCTCATTTAATTAGTTGTATACTTCAATAAAAAATGGATCTTGGAATAAACAAACAAGGAGCATGATAAAATGTGTTTTTTTAAATAATATGTCTCTGTTAACAAGATGTTTGTCTAGCTTAGATTTGTGTGCTCTCATTTCATATTTTTGTTATAAAAAAGTTGTATAGTAATGAGAGTTGTGTATGTTCAATGAATGTGTAGGGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATGGTAAGTGTGAAAAATATATTTTCGATCTCTCGATTATTGGTAAATTATGATTTTGATCCTCGTGATATATGACTCAGACTTGTGTGTCTAACCTTTGGTTAGGACTAGAATTAGAATTTCTCAATAACTGAGGGACTAAAAATATTATGAACTCTAAATTTTTACCATGGTTTAAAATATTGCCACTTGCTTATGTATGATTTAAATATTTGTTGCAGATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</genome_strand>
        <mrna_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG..........................................................................................................................................................................................................................ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341289" ref_strand="+" ref_description="SGN-U341289        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 33 kDa secretory protein-related, contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins | chr1:1231577-1234005 FORWARD | Aliases: F19P19.1, F19P19_1(evalue: 1e-87, score=319) genbank/nr: Domain(evalue: 8e-86, score=319)">
      <seq>tgaatctgcatctggaaacactaatttagtgtacaaaggttgtgcaaaacaggcattatcagatccatctggtgtttactcacaagccctttcaaccctttttggcactcttgtttcacaatcttcaaaatccaagttctacaaaactacaactggtactggccaaactacaataactggtctttttcagtgtagaggtgaccttactaatattgattgttacaactgtgtaaatggtttgccaatactgattgacaagctctgtggcacccctgttgctgcaagaatccagcttttaagctgttacatgctgtatgaagtctcaagcttcccacaaatctcaggaatggagatgttgtacaagacttgtagtggaaaaaatgcaccagggagtggatttgaggagaagagggatactgctttttcaacactggaaaatggaatgtctagtgctaataatggattttacacttcaaattatgagtctgtttttgttttgggacaatgtgaaagggatgtaagctcttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="27541" stop="26409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27241" g_stop="26709" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U341289" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27241" e_stop="26709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</genome_strand>
        <mrna_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAAGCTGTTACATGCTGTATGAAGTCTCAAGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAAGGGATGTAAGCTCTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328914" ref_strand="+" ref_description="SGN-U328914        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G05590.1 | Symbol: None | expressed protein, similar to nucleolar protein C7C (GI:13540302) (Rattus norvegicus) | chr2:2067094-2069167 FORWARD | Aliases: T20G20.6, T20G20_6 (evalue: 2e-37, score=151) genbank/nr: gi|30678208|ref|NP_849938.1| expressed protein [Arabidopsis thaliana] gi|13569552|gb|AAK31146.1| unknown [Arabidopsis thaliana] gi|26983854|gb|AAN86179.1| unknown protein [Arabidopsis thaliana](evalue: 2e-35, score=151)">
      <seq>catattttgtgaatgtaagagatcgaagagaggtccaaccacttcaatcaaattcttttacgtggagaagtaaaagtttctcgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagagataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgccagcggttctgaaacttttgaagatgctcctgatagacacagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacggccagacacggtatatcactccgcactcttattcgcaagagtgctgatatttctggtccttgcttgctgattactggtgataagaagggtgctgtgtttggtgggttgctcgaggcaccgttaaagcctactgcaaagaggaaataccaaggaacaaatcaatcatttgtattcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="32526" stop="34193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32826" g_stop="33243" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33244" i_stop="33340" i_length="97">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33341" g_stop="33413" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="491" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33414" i_stop="33533" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33534" g_stop="33614" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="572" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33615" i_stop="33862" i_length="248">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33863" g_stop="33893" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="603" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U328914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32826" e_stop="33243"/>
          <exon e_start="33341" e_stop="33413"/>
          <exon e_start="33534" e_stop="33614"/>
          <exon e_start="33863" e_stop="33893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAGGTAACCTTGATTTTAAAATAGTTTCTGCTATGACGTATATTATAACTTCAGTATCCTGAATACTAATATCTATCCTGTTCATTCTAATGAAGGGCAGTACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTGGTATGTTCACCTAAATTGCTGCAAATATTTGTCGTGCATACATTCCTGACTTCTATAGCAATTTTTAAAGGATCTCATCTTTCTTTTGAAGATGAATTTTCTTTATAATGTTTGTGTCAGATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAAGTAAGGAAGCAAATACATGCAGTATTTAATTTTCTTTTAACTGATACAACCTAATGTTCGAAGAGAAAACCACCAGTTTCTGGTCTAATCTTACTCTTGGTAATTGACTTGGTGCGAGTAAAGCATTTCAAACCCCCTTTACTTCAAATGAAGAGTTAAAAAGCAATTGCCTATGTCTGCATTCTCCATTCTCACTGAGCATTGGTTTTATTTCTAATGCTTATGTGGTTATTGTATTATTGTGACAGGGAACAAATCAATCATTTGTATTCACAACTC</genome_strand>
        <mrna_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCCAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG.................................................................................................TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG........................................................................................................................ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA........................................................................................................................................................................................................................................................GGAACAAATCAATCATTTGTATTCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316861" ref_strand="+" ref_description="SGN-U316861        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: AT1G04510.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400); similar to cell cycle control protein cwf8 (SP:O14011) (Schizosaccharomyces pombe (Fission yeast)) | chr1:1226574-1230826 FORWARD | Aliases: F19P19.2, F19P19_2 (evalue: 0, score=761) genbank/nr: hypothetical(evalue: 0, score=805)">
      <seq>tcggccgaattgctcgctctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgctactggtggagtcgattcaaacgctgtggtctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactagtggtctctggttcagcagataagacagttcgtgtgtggcaaagttccgaaaatggaaattatgactgtaggcatgtcttgaaggatcatactgcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacatgtagcagatgcttcagaatctgagggctatacttctgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctttggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgccatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaacttcaaaactttcgctccttacgatgataacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccagcgtcaaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcatgttcaagagttgatctgaattcattgttgtgtacatcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttgctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="44077" stop="35220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43789" g_stop="43685" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43557" g_stop="43472" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="191" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42716" g_stop="42645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="263" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42186" g_stop="42100" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="413" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41055" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="555" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40966" g_stop="40845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="677" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40661" g_stop="40545" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="794" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39878" g_stop="39783" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="890" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="39645" g_stop="39586" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="950" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="39022" g_stop="38948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="951" r_stop="1025" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="38097" g_stop="37993" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1130" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="37877" g_stop="37761" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1131" r_stop="1247" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="37653" g_stop="37576" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1325" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="37467" g_stop="37371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1326" r_stop="1422" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="36859" g_stop="36808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1423" r_stop="1474" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="36275" g_stop="36205" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1475" r_stop="1545" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="36116" g_stop="35545" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1546" r_stop="2117" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2122" polyA_stop="2152"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U316861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2117</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43789" e_stop="43685"/>
          <exon e_start="43557" e_stop="43472"/>
          <exon e_start="42716" e_stop="42645"/>
          <exon e_start="42526" e_stop="42464"/>
          <exon e_start="42186" e_stop="42100"/>
          <exon e_start="41196" e_stop="41055"/>
          <exon e_start="40966" e_stop="40845"/>
          <exon e_start="40661" e_stop="40545"/>
          <exon e_start="39878" e_stop="39783"/>
          <exon e_start="39645" e_stop="39586"/>
          <exon e_start="39022" e_stop="38948"/>
          <exon e_start="38097" e_stop="37993"/>
          <exon e_start="37877" e_stop="37761"/>
          <exon e_start="37653" e_stop="37576"/>
          <exon e_start="37467" e_stop="37371"/>
          <exon e_start="36859" e_stop="36808"/>
          <exon e_start="36275" e_stop="36205"/>
          <exon e_start="36116" e_stop="35545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</genome_strand>
        <mrna_strand>TCGGCCGAATTGCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAT...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344709" ref_strand="+" ref_description="SGN-U344709        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: monodehydroascorbate(evalue: 3e-05, score=52.4)">
      <seq>ggtttggtattcttcttctagaatcaagattcgtctaaaaacaggtattttgttgttggaggtgaaagtggtggatgaggtttcttccatgtggtatacttttgtagaagtaatttttatttctttaataaccaaagtttcttgcttttctttctctactttgttttaaaatagactttttgaaggactaattgtatatcttatctttgtttagtggggttgtcttgaaattggctaacattaagtatatctttatgtggggtttgttgtttctgaaggggattgaaagagcttatagcttgatctgcaaggtgaatttgaagtggggtttcatatttttttggagtgctggtggatttcggtctctttgtataaccgtgtttatactgtggaacgtgaaggaagaaagatcattttatctgatttctaatgtttaatcagcttggatgtggaatatggacaacagaaacatggactatgatgaacctattattgaacgtttattgcagcttgtgaacaacgaagaacaagcagaggagaatatttgtttgtcgacaagattagtagaagagttagaacctcagcacctacggagattagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="63822" stop="65589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64122" g_stop="64467" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64468" i_stop="65031" i_length="564">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65032" g_stop="65289" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="604" r_length="258" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U344709" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64122" e_stop="64467"/>
          <exon e_start="65032" e_stop="65289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAGGTGAGTGAGGAAGTTATTGAACTTTTGATTTTACTTCTGATGTTTGATGTTTAGTACTTTGCTTACTATTTATTGAACATGTTATGTTTGTATTTTTTGTGCAATTTGTCTAGGAGTTGTTGCAAACTTGCAATTGTTTATACTGTTTTTGTTGATTCTTGAAATGTAACTAGGATCTGCTTAAGCTTAATGAGATATATATATATAACACTGTTCATTCTTCTTTGTTCTTTCTTTTCACTGTTTGTATCTCTCCCAGCTATTGGGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAGGAGATTTGTTGCCAAAGATTTGATTTTTTTTTCTTCTGTTTTTCAGCTGTTACAGTCTGAGACTTGTTTTGTAGACGGGGAATCTTAGTAGCTAAGTTGATTGGCTACCTGAGTTCGATTCCCCATTTTGTAATCTTGTTCACCTACAAAACACTTGTTTTGTATACCCTCTTGTAGCTCATTATTTGATCAAGTTTTAATCTTTTGAGTAATTTAACTTGTAAAGATTCTGTCTTCTGATTTATGCATAAAAATTCTTGTAGTGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAA</genome_strand>
        <mrna_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGGTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAACCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTATATCTTTATGTGGGGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTATAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAACGTGAAGGAAGAAAGATCATTTTATCTGATTTCTAATGTTTAATCAGCTTGGATGTGGAATATGGACAACAGAAACATGGACTATGATGAACCTATTATTGAACGTTTATTGCAGCTTGTGAACAACGAAGAACAAGCAGAGGAGAATATTTGTTTGTCGACAAGATTAGTAGAAGAGTTAGAACCTCAGCACCTACGGAGATTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323135" ref_strand="+" ref_description="SGN-U323135        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14147058-14150194 FORWARD | Aliases: F4P9.13, F4P9_13(evalue: 7e-78, score=288) genbank/nr: gi|15226101|ref|NP_180894.1| expressed protein [Arabidopsis thaliana] gi|25408264|pir||E84744 hypothetical protein At2g33360 [imported] - Arabidopsis thaliana gi|2459419|gb|AAB80654.1| hypothetical protein [Arabidopsis thaliana](evalue: 5e-76, score=288)">
      <seq>aagatacttccttcgctgccttgaattggtacacatacactccacatgtaacttctcttcaaagatgcaaattatatcaaagagttcaggttcaagagaggttagaaatgaaaatctccacactaatggtaatctggcgaccgaatgtcctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgctataactggtagtaagagtatgctgaacattttaaagagtcccttacttaatcaatttggatctgttaactgtactgttgattctggaaaggaaaatataaatgacagtgaagaaggaagtttttctgatttcatgagctctcccggtggttttagtgtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacaaaaagttggcaaagaaagtaacagatgtgttcagaactagtcagtcttataagcagagaagcttatccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagtaagatgacaccaagtatggtatctgttgttatagctctctttctttaaagaagtcagacaaatcgaccattagaaatggntcaaagatataacatatgattgtctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="65086" stop="67488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65386" g_stop="66799" g_length="1414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1414" r_length="1414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66910" g_stop="67188" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1415" r_stop="1692" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U323135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65386" e_stop="66799"/>
          <exon e_start="66910" e_stop="67188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTT</genome_strand>
        <mrna_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTT-AAAGAAGTCAGACAAATCGACCATTAGAAATGGNTCAAAGATATAACATATGATTGTCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316415" ref_strand="+" ref_description="SGN-U316415        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT1G04480.1 | Symbol: None | 60S ribosomal protein L23 (RPL23A), identical to GB:AAB80655 | chr1:1216094-1217457 FORWARD | Aliases: F19P19.5, F19P19_5 (evalue: 3e-76, score=280) genbank/nr: gi|32400871|gb|AAP80667.1| ribosomal Pr 117 [Triticum aestivum](evalue: 3e-76, score=286)">
      <seq>taatgtaccgtactttcaggatccaaaaatgtcgaagcgagggcgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="80567" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80867" g_stop="80907" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80999" g_stop="81283" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="326" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83003" g_stop="83044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="368" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83211" g_stop="83434" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="592" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="603"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U316415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80867" e_stop="80907"/>
          <exon e_start="80999" e_stop="81283"/>
          <exon e_start="83003" e_stop="83044"/>
          <exon e_start="83211" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG...........................................................................................GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326342" ref_strand="+" ref_description="SGN-U326342        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | acid phosphatase class B family protein, similar to SP:P15490 STEM 28 kDa glycoprotein precursor (Vegetative storage protein A) {Glycine max}, acid phosphatase (Glycine max) GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase; supporting cDNA gi:13926197:gb:AF370572.1:AF370572 | chr1:1042361-1043861 REVERSE | Aliases: F21M11.2, F21M11_2(evalue: 5e-71, score=264) genbank/nr: gi|18379219|ref|NP_563698.1| acid phosphatase -related [Arabidopsis thaliana] gi|25406763|pir||F86171 hypothetical protein [imported] - Arabidopsis thaliana gi|4204285|gb|AAD10666.1| Similar to acid phosphatase [Arabidopsis thaliana] gi|13926198|gb|AAK49578.1| Similar to acid phosphatase [Arabidopsis thaliana] gi|16226693|gb|AAL16234.1| At1g04040/F21M11_2 [Arabidopsis thaliana](evalue: 3e-69, score=264)">
      <seq>aaatctcaaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttaaagttgttcaatcatcttaaagaactaggagttcaaatctttcttgtttcttcgagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgcacagacattcaaggcagagataagaagtaaacttataagtcaaggttatagaattgttggcattattggagaccaatggagtagcattaatgggtcttccagtgcaaaaagatcattcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="85423" stop="87476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85723" g_stop="86119" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86738" g_stop="86947" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="607" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87027" g_stop="87176" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="757" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U326342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85723" e_stop="86119"/>
          <exon e_start="86738" e_stop="86947"/>
          <exon e_start="87027" e_stop="87176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGTAGCATTAAT-GGTCTTCCAAGTGCAAAAAGATCATTCAAACT</genome_strand>
        <mrna_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGTAGCATTAATGGGTCTTCC-AGTGCAAAAAGATCATTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318380" ref_strand="+" ref_description="SGN-U318380        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: AT5G35620.1 | Symbol: None | eukaryotic translation initiation factor 4E 2 / eIF-4E2 / mRNA cap-binding protein 2 (EIF4E2), identical to SP:O04663 Eukaryotic translation initiation factor 4E (eIF-4E) (eIF4E) (mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit) (eIF-(ISO)4F P28 subunit) (eIF4Eiso protein) {Arabidopsis thaliana} | chr5:13841991-13843621 REVERSE | Aliases: MJE4.8, MJE4_8 (evalue: 5e-71, score=264) genbank/nr: gi|51557995|gb|AAU06579.1| eukaryotic initiation factor iso4E [Nicotiana tabacum] (evalue: 5e-106, score=387)">
      <seq>gggcgattggcggccaatcggccgaattgaattcctttacgcctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttatgtggtatcactttatatctcaagtagactctatgggagaaagcttagtcgattcattgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="90364" stop="94338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90664" g_stop="90925" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="291" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91579" g_stop="91747" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="460" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91880" g_stop="92005" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="586" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93578" g_stop="93640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="649" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93747" g_stop="94034" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="937" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="952"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U318380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90664" e_stop="90925"/>
          <exon e_start="91579" e_stop="91747"/>
          <exon e_start="91880" e_stop="92005"/>
          <exon e_start="93578" e_stop="93640"/>
          <exon e_start="93747" e_stop="94034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</genome_strand>
        <mrna_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317999" ref_strand="+" ref_description="SGN-U317999        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:2081050-2081837 REVERSE | Aliases: T20G20.3, T20G20_3(evalue: 3e-37, score=151) genbank/nr: PGR5(evalue: 3e-36, score=154)">
      <seq>cattatcatcacttttatattcaagaatattatttactactagtagtcctaagaaaaaaggttatttgaatggcaattacaagttcaattgcaacaacttcattttcttcatgtgttagtggtgaagattatggtaagtttatgaggaaagtgcaaccattaatgaatgttaaatttggaaaggcagtgagatcaaggataatgatgggtaatgttaatgatggaaaaggattatttgcaccaattgttgttatcactaggaatattgttggcaaaaaaagattcaatcaacttaggggcaaagctattgctttacactctcaggtaatcacagagttttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="96472" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96172" g_stop="95849" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94679" g_stop="94428" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="576" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="594"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U317999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96172" e_stop="95849"/>
          <exon e_start="94679" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAGGTAATTTATCATTTGCTCGATATCCGTTATTATCCATCAGCATAGATGTCGTATAATTTTAAATGTCTATCGAGTGCATATGAGCAGAAATCATTTTGTTTTTGAAGAAATTTTATGTTTTTCATTCATAAAATTGTCTACTAACAATTTTTGTCTTTGCTTATATTGTTTTTGGGTAGATCTAGTCTTTCTTTAGTGTTGATATTATTGAATATGATCTATGAAAGTTCTAATTTGGGGATAAAGTCAATAAAAATAGCAAAGTTAATTGGTGAAAAATGATGAATTGTAAATTAATTTGTGATGTTCAAATTGAGAATTAGATATATAAGTTTAGTCTATTTGGACTGATTTTGGATTTATGACAAGAATTTTCAAGTGTTATGCATTTAAAATCATTAATTCTTAATTTAATATTAAGTCTAAGCTTAGAGGTTTTAGTTCTCAAAATTCTAGTTTATTGTTCTAAACAAGTAGGTTAAGCTTTTCAATGTTGGATTTGACTAATATATGTCATGTAATATTAAATTTATTTCATTTACTTTTTCAAAAGTAAACTTGAAAAAAAGTAAACAAACTCAAACAATTCATAAAAGATTTCAAAGAGGACAATTTGTTAGTATGTTTCTCAAGTTAAATGTGGTATTTGAGTCTCCAAAAAGGATAAAGGCCAAGAGGTCACAATTTCAATGGTAATATCAACCACCCATAGTAGTGATGGGCTTGTAGGTAACCCCCAACCCCCATCCCACTACCCCACTCTTCTACTTACCTAGAGGTCTGAGGTACGAGCCTCTGAAATGAAATCGCCTTGGGTAGGGACTACGCGTTTTATCTCTAAAAGTGGAACTTCCGAACACGAATCTGCTAGATTAGTTGGGTACCAATTGCAAGTATTCTTAACTAGATGTCTGGAGTTCGAGTCTTGAAAATGAAATTTCCTTTGATAGGGACCATTTTACACCTAAAGAGGAACTTCCAACACTCGTCCACCAGATTAGTCAGGTACCAATCGTAAATACCCCTCCCCCTATCCTTAACTACAGGTCTGCAGTTCGAGTCTTTGAGAATGAAGTCACCTTTGATAGGAACCATTAGATTATTAAACCCTAAGGTGGAACTTCCCGGTGCGGAAACCAAAGCTAATGTTGATGGATTTGTTTGATCAGGTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>CATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345832" ref_strand="+" ref_description="SGN-U345832        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atgttggtggccaaagaaagaactcttcgaatcaatcaagctccttacttgtctttaaagtatctttgtactaaattagaagaaaaaaataggtatttttatttttggaccaaggactgctgtcaattacaaaagaagctaggccatctctgttctagaggtagagagcctatgaaatataaaacttaatttacattatctgcaaatgaaaattataccaaacgaacaaagacagaaagtcttgatgctataaggatgattagattttcctcttgaagagttcatacaatgcaaacagggaacaacaatgagtgaaccatgtttttttgcattcctatagcggttttttctagaccagtgcttcagaaagctgctgttggggactttgggttcttattatcatcactgttgcctgaattattttaaagcatatacgttgcattgtacaatctacaatgcaaagacaagtgatttgagtcttaagtatccagatcacagaagtagtatctcttacatgaatataatcccataaaccccttagtatttgttatgcaaatataatcccctgaactccttagtaatttttacgcaaaaataatccccttctccttatattttcttgtgttagacaaacttcangcatatggcataaccattggttccatcagaaatcagaatctgatctcattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="109877" stop="111169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110177" g_stop="110869" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U345832" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110177" e_stop="110869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCAGGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</genome_strand>
        <mrna_strand>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCANGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320778" ref_strand="+" ref_description="SGN-U320778        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14158655-14159820 FORWARD | Aliases: F4P9.16, F4P9_16(evalue: 2e-11, score=67) genbank/nr: gi|15226104|ref|NP_180897.1| expressed protein [Arabidopsis thaliana] gi|25408265|pir||H84744 hypothetical protein At2g33390 [imported] - Arabidopsis thaliana gi|2459422|gb|AAB80657.1| unknown protein [Arabidopsis thaliana] gi|19310603|gb|AAL85032.1| unknown protein [Arabidopsis thaliana] gi|24030291|gb|AAN41317.1| unknown protein [Arabidopsis thaliana](evalue: 2e-09, score=67)">
      <seq>atcttgtatcttctttctattttttctcttttttttttttcaaatctaatcatacaaattcaagggtttttgattcattgttataccaattcttctactttttccattttccttcacattcagagaaggaaaattaacaaaaaagccaattcttgaaagctaaaccaatacaaagattagctttttagctttttttgatacatacccatatagttttatgaggatttgaagatcaagaatctacaaattccttgttttgatatcatttgggaggtgggtttttgtgggttatgaagataatgcattaaatcttgaaattttcttgtaaagatttgagctttttgaggttttttgttgaaatggggttgttggttttgcattggaatcatatgattttgaggttgtttaggtaaaggaatttagaaggaagatttgttttttgttgttgttgttgtgtgtttggaggaatggatactaaaagtaataaagatttaaaaggggagaaaattcagtatgttgatagtgtggaagctcttcctaattctgtgttgaatggtggaaaagatgaagatgatgagtctaaagcattgttgccttctaggaaaggtggattgtcaaaaaagatagctaagccaaagaggaaagttcagtggaatgatacaaatgggaataaacttactgaggttttggaatttgagccaagtgatgcaagtgactcggatgaagatgattcagattcttgcatttgtaggataatgtagttcttattaaatgcattaccaaaccaattgtgagtcaagaatgttgaatctccttcgattcacatctttatagcatacaataacagcagtttttaagagagtcgactgtctctaatttggttcaagttatctgagccaaatgaaacgaccctttctcgttgaacacaatcagatagagagaataacttcctctattgtataatgtatatgagtgcttcgagttatagtagataacatacagaacccttcaggttttcttgttttcttttgcttaattataatgtatatgagtgctgagccttacagatgatgactttgttctagcaagaatgattttataacatctttaattctttgtccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="+" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="122113" stop="126265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122413" g_stop="123115" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125547" g_stop="125964" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="1121" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1122" polyA_stop="1139"/>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="+" ref_id="SGN-U320778" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1121</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122413" e_stop="123115"/>
          <exon e_start="125547" e_stop="125964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAGGTAAAAAAAAAAACAAATAGAAGAAAAAAATTCTCTTTGTTGTCTCCTCATTTAGCTTATGGTTAATCTGTAGAAGTTTTGGTCTACAAAATTTGGTTCTGAAGTCTCTGATTATGTGTGATTTGTGTTTGTTGCTCATTGTGGAAAATCACAGTAGTTAATCAAGTTCATGTTTTCGGACGGTGGATCACTAGAATAATGTGGTAAAGCAATGATTCTCTGTAGAACTATTGATGGTATAGGAACCTGTCTGGTATTAGATCTTTTATTTAGCAAAAGTGAAAGTATAAGATGAAAATAATTTAAGTGTGATGTTCTGTTTATGCCTTATGTCTAATCTGAATAGAGTATTAGATAATGTATATGTAGTCTGTGTGGGGAAATCTTTTTTGTGATAAGCATATTGATTGCGTGAATCGCAGCTATAGATTAGTTATTCACGATAGTGTTCATGGCATTCTAATATAAGCAGCATGATATAGACTGTTATTATGAGTTGCCATGGGAATGTGGGCATAGACTGGTTCCCGGCAACTGTGACTGTGGGCAGTAGCAGGCTATCCGGTGGATTAGTTGAGGTGTGTGAAAATAGCATAGACACCGCTTTCATCCTAAAGAAAAAGAAAAGAAGCCAATGATCATTAGATTTCTTATTCTATTAGCTGATGAACCATAGGACCTGAAAGGAACATGCTTAGGTCCTGGCTGCATTCATGGGAATGATCTTTCAAAAAATATAAGCTGCACTATACGCATTGGGCAATATTACAGTATAAATGCTCAAGCTATCCAAAACCACAAGAAAAAGGTCTAAGTAGTATGTCATCCAAATGCAGTATGCTGTCACTTTATTATTATTGTAAAGTGAATGTAGAGGCAACTCCACATATTTAGGAATTAGGAGCATCTTGTTTGAGGAATATATCCATTTAGTGAGCTGTCAGTATTTGTTTCATCTTAACTTGCTCATGAATTGTATTGATTGTAAGTTTCTTAAACATCTAATAGACTCTTGCAGAAGCAAGTATAATGTATAATCTTTTAAGAAATTTTGGTCTAAGAAATGTTTGTGCATCTCGGGAAGAGAAGTAGGATTAAATAGCTTGGGGTAAATAAAGCCCTTTCTCATGTATTGAGTGTCGATACTGATATCAACAATGCAATATTGCATATTGTCCTCTGCTTGGAAATGTGTTCTACAGTTTTCTTTACTACCTCTTCGGAATAAAATTGGGCAAAGACTACACGCATCATGAGAAAATTTTAGCATCCAGAAAGTATGTTGTTGGTAAGGTGACTAGAGTTGAACTCTTTCTGGTCTTTAGTAACACTGCCCCCCCCGTCTTTCTTTGACTTATGAACTAGGAGGTCAAAGCTTACTGTATACTGGAATATGCTATGAAAAGGAAGGGTAGAACGATTTATGAAGTGAAGAATGGGTGATAAGCTTATTTTCTCATTTTTGGCCAGAATGCTGAAAGTTGTTTTGCAGGTGCTAATTGACGCCTTTTCACTTGTGTTTTGATCTATGGTTCCTAACTTTCTGAATGTTTCTTGTCTGACTTCGCACAGCTATTAAGAATAATTTTATGGATATTGCTAAGAGGCTCAGTTAGGGGAACTAGGGATGATAAACAGGATCAATGAATCCTTTCCCTGCCATAGTTTTAACCCGCTCTGTCACTCCCCTCCCTGCCCCGCTGAACACCTTTTAGAACCTTTTTTCTTCCATTTTTGTGCACTGAAGTATAATGATCTTCTAAACGGTAGTAAGAAAAAATGGACCTTGAGCCTAACTCAATCCCAAAAGCTAGCTAGCTCATGAGGTGACCCCAGACCATAAGGAGGCAATAACACACTCAGAATATGACCCACTGCACCTTTATGTCATCGTTGGTTAATATGGTTACGTCGTAGAGGCATTTAGGCACCCATGGCCCCGGCCTGGTATATCTTAGAAAAGTAAGCATTCACCCGCCCCATCCTCCCCTGGCCTACTCTGCCTGAGCATTGCCCTGCTGCCACCATCTTCCCCATTAACATCCCTAAGGGGGGTGTACTATATAAGCTTAGGCTATGTGTCGTATGAAACATCATAAAAGATGAGATAATATCTCACTATAGACTTGACTTTAATGCTGTACATCCCAAGCACTAGATCTTGAATTCATTAACGAGTAATGTTTGTGTTGGTCATCTGGCAATTGAAGTTGCAGGCACTACTTGATCTAGTTGGTGAACATTTGTTTTTTCTCTAGTTAGTTCATCAAAAAGATAGGATGTAACTACTTTACCCCTTTGCCATGGAACGTACAAGTTTGTTTCTTGTTAGCCGTTTACTTTTGGGCATTATCTGAAGTTTGCATTTTATACTACAGTTCTTCAGTTTATCAGGATTGCTCTTACATATAGCTTTTTGTTTTTCCTGCAGTGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCC</genome_strand>
        <mrna_strand>ATCTTGTATCTTCTTTCTATTTTTTCTCTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327030" ref_strand="+" ref_description="SGN-U327030        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to unknown protein (gb:AAD10667.1) | chr5:17736262-17738741 REVERSE | Aliases: MRH10.15, MRH10_15(evalue: 6e-09, score=57.8) genbank/nr: At1g04030(evalue: 1e-07, score=59.7)">
      <seq>atgatgatgatgatgttggtggtgatgaatctgcagattctttgcatattgaagcagaaaacaagtatggaaatgttgaaaaactgaacacagatgaatcgaatgtagtaagtcgaaatcataggagttctgtgcttcttccagttgaaaatctcactcaatggaaagcagttaaagcaagaggagcacaacaagtgaagcatcagaaggaaaacataatcaaattggatggaaaaccagtaaacagccattgtgtggacctaaatcccaaatacaactctaagcctaagtctaagcttcaaggacatgatatttcagtagatgccagcctctctaactggatggtttcagcaaaaacaacatcagtaaatggatcagctgtgtattacaatcaacatagagctgcagatgaagtcgtgctcgatgaagtcaatatcatataaacagagaaggtgcagtacctaaatacatttggattgatgtttgtgtaaagaattgattgttttttttgcatgatttatgtgtgcagtgtgttgtattctcttctccgcgagagaagaaaagacaataagattttcatctggggaacctgtatttggttgatagcatatcatatgcatgttgtaattcttttactgttacagaacaaagcaaatggacaaagaattaaagatgttataaaatcattcttgctagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="126919" stop="125623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126619" g_stop="125923" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U327030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126619" e_stop="125923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGATGATGATGTTGGTGGTGATGAATCTGCAGATTCTTTGCATATTGAAGCAGAAAACAAGTATGGAAATGTTGAAAAACTGAACACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTG-TTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAAATCATTCTTGCTAGAA</genome_strand>
        <mrna_strand>ATGATGATGATGATGTTGGTGGTGATGAATCTGCAGATTCTTTGCATATTGAAGCAGAAAACAAGTATGGAAATGTTGAAAAACTGAACACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAAATCATTCTTGCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332341" ref_strand="+" ref_description="SGN-U332341        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14159782-14161606 REVERSE | Aliases: F4P9.17, F4P9_17(evalue: 3e-07, score=51.6) genbank/nr: gi|30685680|ref|NP_180898.2| expressed protein [Arabidopsis thaliana] gi|23092569|gb|AAN08441.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-05, score=51.6)">
      <seq>tctaaaattccttctccattcttctctgtcgattttttcttttttgggggaaaatcaagaaaacagagatcttgaaaacaaaaacaaaaacaaaaacaaatgggatgttttcttggatgttttggttttacaaacaagaaacaaaagcgtataaagccttgtaacaagtttcaagtgcatcaaaagtatgtaccactggattctgagaaggaaattgttgtaaattcagcaaattctgagcccagggataagccaaaagaatcatcaaaacgtaaggtgaaaaagaaagtgagtttcaatttggatgtgaagacttacgagagaatacaagatgatgaaaacaacacaacatatttctcagaggaagaggagaagacaaataaacaagaaacagccaaagcaagtatgtctatgtacccttcgagtcatcgatactataactgcaacaatagctacgatgaggaggaagacgagataatacttgaggacagtgatatcgatgatctagatgacgatgaagaagaagagactatggtgttagtgatgacgatgatgatgatgatgttggtggtgatgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0008K04-8p2Y9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0008K04.1" temp_strand="-" temp_description="C09SLm0008K04.1  AC217144.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0008K04 upload_account_name:spain (1 - 130552)">
        <position start="128472" stop="126287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128172" g_stop="127999" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127458" g_stop="127388" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="245" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126924" g_stop="126587" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="582" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0008K04.1" gen_strand="-" ref_id="SGN-U332341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0008K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128172" e_stop="127999"/>
          <exon e_start="127458" e_stop="127388"/>
          <exon e_start="126924" e_stop="126587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAAGTAAGTTGCGTCTTAAAATTCAATTTTTTGTGTTCATTTATTTGTAATCTAAAGACTTGAGTCGTTTAGATACAGTGACGAAGACAAGATTTTTACTGAAAAAAATTGGATCTTTGTTTTTTTAGATGAATCCTTTCGCCTCTTTAGCTTAGAAATGATGGTTGATATGTGTTACCTGAGGTGGGGTAGAGGCGGAGCTAGGTCGGGGTTTATGGGTACAGATGAACACAGTAGCTTTTTCGGCAGATCCTGTATTTGTATTAGAAAATTTAAATAAATATCTATGTGTATTGGTTTGTGGATCTCTAATAAAATTGATTCACAGTGAAAATGTATTTTATATTAATGCTCAAATTCCTAGTTTTGATTTCGCCTCGTAAAAAGGTTAAGTTTGCTTACATGTATACTCTACCCTAGCTCCCTATACCTACTCGATGGGATTATATTGAATATGTTGTTTGAATTGACGTAAAAAAAAAATATCATTTTGTTTGAATATGAAGAAGTTTGCTTTTTTTTTTTTTAAATATTGTTTTTTAGGTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAGGTGAGTTTAGCAATTCATGTTTTTTTCTTTTTCCACTTTTTGATAGTAATCATGTCTGGATAAGTTTATGCATCTTGATAATTTCATTGAGTTTGCTTTACTTGAGTCGAGAGTGTATCAGAAATCATCGGAACACATGAGTTATTTCAGTTTATCTCAGCTAGTAGTTAGTCGTATTAAGGGTAATACTGTGTACACATCAGTGTCTAAAAATTCCATTTGTCTGTCCCTAAGTCTCACTTGTGAGATTATATTGGGTATGTTGTTGTTGTTATTGACTATTTCTTCGGGGTTATGACAATCAAGACTTAGGCAAATGAGAAGAATACATCTAAAGTTTTTTTTATCTCGATTGAGATTTGAACCTTAATCTATTTTCATTGACTGCTAGGTTATATCATGTTAGGTATTCTCATCAACTTCATTAACGACTAGGTCGTTTTCATGTGTTGTTTGTTTGTAGGGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAGAAGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTG</genome_strand>
        <mrna_strand>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAG-AGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9779" PGL_stop="6437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9779" e_stop="9516"/>
            <exon e_start="9407" e_stop="9357"/>
            <exon e_start="9247" e_stop="9131"/>
            <exon e_start="7677" e_stop="7597"/>
            <exon e_start="7521" e_stop="7423"/>
            <exon e_start="6656" e_stop="6437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.333" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9779" e_stop="9516" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9515" i_stop="9408" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9407" e_stop="9357" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.333" acc_prob="0.899">
            <gDNA_intron_boundary i_start="9356" i_stop="9248" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9247" e_stop="9131" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.832">
            <gDNA_intron_boundary i_start="9130" i_stop="7678" i_length="1453"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7677" e_stop="7597" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.892" acc_prob="0.933">
            <gDNA_intron_boundary i_start="7596" i_stop="7522" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7521" e_stop="7423" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7422" i_stop="6657" i_length="766"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6656" e_stop="6437" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9779" stop="9516"/>
              <exon start="9407" stop="9357"/>
              <exon start="9247" stop="9131"/>
              <exon start="7677" stop="7597"/>
              <exon start="7521" stop="7423"/>
              <exon start="6656" stop="6437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG : GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA : TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG : ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG : GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG : TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</gDNA_template>
            <first_frame> T  I  W  P  F  *  P  L  I  Q  T  I  L  L  K  E  *  E  K  K  A  T  P  F  N  D  L  F  P  F  S  R  I  I  H  S  F  W  L  N  I  H  R  F  P  L  L  F  V  T  F  I  T  K  D  F  T  F  L  K  I  S  K  A  K  Q  E  E  E  V  E  S  F  E  L  F  V  *  F  *  S  I  F  *  V  R  T  Q  :  E  K  R  *  L  V  D  S  *  *  L  L  Q  V  K  R  Q  :  C  I  Q  G  L  R  *  G  Y  R  K  K  K  M  I  S  M  L  I  S  L  C  H  L  *  R  L  L  N  P  F  P  *  V  T  S  L  L  Q  :  M  I  R  L  H  Q  L  *  G  Y  P  E  H  V  F  *  A  Q  T  D  M  D  F  H  H  *  E  :  G  E  *  R  K  I  T  K  A  F  L  V  E  A  N  Q  I  Q  G  P  L  L  S  L  D  H  V  Q  S  Y  Q  A  L  :  L  M  I  K  *  *  A  R  G  A  R  R  K  Q  K  Q  F  Q  T  *  R  I  T  I  H  V  K  T  D  I  T  S  S  A  K  L  F  Q  N  Q  F  K  I  H  I  I  Q  V  E  I  S  A  Q  K  R  P  I  M  G  N  L  I  L  E  Q  E  Q  G  *  *  K  V  I  </first_frame>
            <second_frame>  Q  F  G  P  F  D  L  S  Y  K  Q  Y  C  *  K  N  R  K  R  K  Q  P  L  L  M  I  C  F  H  F  Q  E  S  F  I  V  F  G  *  I  F  T  G  F  H  S  F  L  S  L  S  L  P  K  I  S  P  F  *  R  Y  L  K  P  N  R  R  R  R  W  R  V  L  S  Y  L  Y  S  S  K  A  Y  S  K  L  G  L  R :   K  R  D  S  W  L  T  L  D  S  F  C  K  L  K  D  N :   V  S  K  G  *  G  E  G  T  E  R  R  R  *  S  V  C  L  S  V  F  A  I  F  E  G  F  *  I  P  F  H  K  *  L  L  F  F  R :   *  F  A  Y  I  S  C  E  D  T  P  S  M  Y  F  K  P  R  Q  T  W  T  S  I  I  E  R :   E  N  E  G  K  *  P  K  H  F  W  W  K  Q  T  K  Y  K  G  H  F  C  P  S  T  T  C  S  L  I  K  P  C :   *  *  S  N  D  K  H  E  E  Q  D  E  S  R  S  S  F  R  L  E  E  S  Q  Y  M  S  K  Q  T  S  H  Q  V  Q  N  F  S  K  I  N  S  R  F  T  S  Y  K  W  K  *  V  L  K  R  D  R  *  W  E  T  *  S  S  S  K  S  K  A  S  E  R  *  S </second_frame>
            <third_frame>   N  L  A  L  L  T  S  H  T  N  N  I  V  K  R  I  G  K  E  S  N  P  F  *  *  F  V  S  I  F  K  N  H  S  *  F  L  V  E  Y  S  Q  V  S  T  P  F  C  H  F  H  Y  Q  R  F  H  L  F  K  D  I  *  S  Q  T  G  G  G  G  G  E  F  *  A  I  C  I  V  L  K  H  I  L  S  *  D  S   : G  K  E  I  A  G  *  L  L  I  A  S  A  S  *  K  T   : M  Y  P  R  V  K  V  R  V  Q  K  E  E  D  D  Q  Y  A  Y  Q  S  L  P  S  L  K  A  F  E  S  L  S  I  S  D  F  S  S  S   : D  D  S  P  T  S  V  V  R  I  P  R  A  C  I  L  S  P  D  R  H  G  L  P  S  L  R   : G  R  M  K  E  N  N  Q  S  I  F  G  G  S  K  P  N  T  R  A  T  S  V  P  R  P  R  A  V  L  S  S  P   : V  N  D  Q  M  I  S  T  R  S  K  T  K  A  E  A  V  S  D  L  K  N  H  N  T  C  Q  N  R  H  H  I  K  C  K  T  F  P  K  S  I  Q  D  S  H  H  T  S  G  N  K  C  S  K  E  T  D  N  G  K  L  D  P  R  A  R  A  R  L  V  K  G  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9363" stop="9357"/>
                    <exon start="9247" stop="9131"/>
                    <exon start="7677" stop="7597"/>
                    <exon start="7521" stop="7423"/>
                    <exon start="6656" stop="6439"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTMYPRVKVRVQKEEDDQYAYQSLPSLKAFESLSISDFSSSDDSPTSVVRIPRACILSPDRHGLPSLRGRMKENNQSIFGGSKPNTRATSVPRPRAVLSSPVNDQMISTRSKTKAEAVSDLKNHNTCQNRHHIKCKTFPKSIQDSHHTSGNKCSKETDNGKLDPRARARLVKGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11050" PGL_stop="13637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11050" e_stop="11164"/>
            <exon e_start="11929" e_stop="13637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.920" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="11050" e_stop="11164" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11165" i_stop="11928" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11929" e_stop="13637" e_length="1709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11050" stop="11164"/>
              <exon start="11929" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</gDNA_template>
            <first_frame> *  Y  I  V  C  V  D  Y  Y  *  G  S  R  *  H  L  L  S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : V  Y  S  F  G  C  L  K  L  E  F  G  C  S  D  A  N  D  S  C  A  Y  Q  N  G  S  F  C  L  C  D  V  I  S  F  L  N  F  R  S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q  G  W  E  K  I  D  G  R  C  C  C  H  R  *  K  G  V  S  *  A  R  R  *  C  T  L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E </first_frame>
            <second_frame>  N  I  *  F  A  L  T  T  I  E  V  V  G  S  I  Y  Y  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  F  I  H  L  D  A  *  S  W  N  S  G  A  L  M  Q  M  I  R  V  R  T  R  M  A  L  S  A  C  A  M  L  Y  R  S  S  I  S  G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  V  G  K  K  L  M  E  G  A  A  A  T  V  K  K  V  S  L  E  L  G  G  N  A  P  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M   </second_frame>
            <third_frame>   I  Y  S  L  R  *  L  L  L  R  *  *  V  A  S  I  I  F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  S :   L  F  I  W  M  L  E  V  G  I  R  V  L  *  C  K  *  F  V  C  V  P  E  W  L  F  L  L  V  R  C  Y  I  V  P  Q  F  Q  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  R  L  G  K  N  *  W  K  V  L  L  P  P  L  K  R  C  L  L  S  *  A  V  M  H  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11950" stop="13539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNSGALMQMIRVRTRMALSACAMLYRSSISGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKVGKKLMEGAAATVKKVSLELGGNAPCIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGIVGVNEGLVSTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12462" e_stop="12792"/>
            <exon e_start="12866" e_stop="13395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12462" e_stop="12792" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12793" i_stop="12865" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="12866" e_stop="13395" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12462" stop="12792"/>
              <exon start="12866" stop="13395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG : CTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</gDNA_template>
            <first_frame> I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q   : A  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I </first_frame>
            <second_frame>  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  :  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E   </second_frame>
            <third_frame>   M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  S :   L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12729" stop="12792"/>
                    <exon start="12866" stop="13395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YWRRTACKPTGKKNYIHRFNQACIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12906" PGL_stop="12046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12906" e_stop="12546"/>
            <exon e_start="12269" e_stop="12046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.729" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12906" e_stop="12546" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.729" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12545" i_stop="12270" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12269" e_stop="12046" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12906" stop="12546"/>
              <exon start="12269" stop="12046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316407" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGG : CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</gDNA_template>
            <first_frame> *  S  Y  F  K  I  C  V  I  K  D  D  A  R  C  I  T  A  *  L  K  R  H  L  F  N  G  G  S  S  T  F  H  Q  F  F  P  N  L  G  *  T  C  E  C  N  F  S  Y  L  W  A  C  K  Q  C  V  S  N  I  R  C  I  S  H  N  N  I  H  Y  A  R  W  Y  S  S  L  N  G  E  F  S  C  C  *  S  S  Q  G  C  E  F  R  R  F  N  H  H  C  A  T  T  S  K  S  R  A  N  L  S  G  N  H  S  Q  G  K  I  P  W   : A  K  C  I  I  G  R  R  N  C  I  V  R  L  P  P  S  H  A  W  H  I  C  Y  Y  L  P  C  C  R  I  V  D  L  Y  S  L  P  I  I  C  I  N  P  F  P  S  N  K  S  L  T  P  Q  Q  S  R  A  A  Q  L  S  S  N  T  L  C  V  C  R  H  Q  S  H  W </first_frame>
            <second_frame>  K  A  T  S  R  S  A  S  S  K  M  M  Q  G  A  L  P  P  S  S  R  D  T  F  L  T  V  A  A  A  P  S  I  N  F  F  P  T  L  V  E  P  V  N  V  I  F  L  T  C  G  L  A  S  S  A  S  P  I  S  G  A  F  P  I  T  T  F  T  T  P  G  G  I  P  A  *  M  E  S  S  A  A  A  K  A  V  K  G  V  S  S  D  G  L  I  T  T  V  Q  P  Q  A  R  A  G  P  T  F  R  V  I  I  A  K  G  K  F  H  G  :  L  N  A  S  *  A  E  E  I  A  S  F  V  S  L  P  P  M  H  G  T  S  V  I  T  S  P  V  A  G  L  W  T  F  I  V  F  P  S  Y  A  S  T  H  F  P  P  I  R  A  *  L  R  N  N  P  E  L  L  S  L  A  A  T  L  C  V  S  V  V  I  S  R  T   </second_frame>
            <third_frame>   K  L  L  Q  D  L  R  H  Q  R  *  C  K  V  H  Y  R  L  A  Q  E  T  P  F  *  R  W  Q  Q  H  L  P  S  I  F  S  Q  P  W  L  N  L  *  M  *  F  F  L  P  V  G  L  Q  A  V  R  L  Q  Y  Q  V  H  F  P  *  Q  H  S  L  R  P  V  V  F  Q  L  E  W  R  V  Q  L  L  L  K  Q  S  R  V  *  V  Q  T  V  *  S  P  L  C  N  H  K  Q  E  Q  G  Q  P  F  G  *  S  *  P  R  E  N  S  M  G :   *  M  H  H  R  Q  K  K  L  H  R  S  S  P  S  L  P  C  M  A  H  L  L  L  P  P  L  L  Q  D  C  G  P  L  *  S  S  H  H  M  H  Q  P  I  S  L  Q  *  E  P  D  S  A  T  I  Q  S  C  S  A  *  Q  Q  H  F  V  C  L  S  S  S  V  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12651" stop="12546"/>
                    <exon start="12269" stop="12046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQGCEFRRFNHHCATTSKSRANLSGNHSQGKIPWAKCIIGRRNCIVRLPPSHAWHICYYLPCCRIVDLYSLPIICINPFPSNKSLTPQQSRAAQLSSNTLCVCRHQSHW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12905" stop="12675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KATSRSASSKMMQGALPPSSRDTFLTVAAAPSINFFPTLVEPVNVIFLTCGLASSASPISGAFPITTFTTPGGIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14342" PGL_stop="17244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14342" e_stop="14575"/>
            <exon e_start="14671" e_stop="14899"/>
            <exon e_start="15433" e_stop="15585"/>
            <exon e_start="16545" e_stop="17244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.287" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14342" e_stop="14575" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14576" i_stop="14670" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14671" e_stop="14899" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="14900" i_stop="15432" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15433" e_stop="15585" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.287" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15586" i_stop="16544" i_length="959"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16545" e_stop="17244" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14342" stop="14575"/>
              <exon start="14671" stop="14899"/>
              <exon start="15433" stop="15585"/>
              <exon start="16545" stop="17244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA : GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT : ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG : GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</gDNA_template>
            <first_frame> L  E  R  V  F  G  G  N  M  L  K  L  P  K  R  N  L  P  W  L  Q  L  R  R  L  S  T  A  I  R  Q  T  V  E  D  E  G  D  W  F  Y  S  S  E  W  W  G  T  T  S  G  G  G  D  T  V  F  R  S  I  S  D  K  G  N  G  V  V  S  V  V  A  Y  P  S  S  K  P  :  E  N  C  Y  W  G  K  T  E  N  W  L  Q  K  R  Y  E  K  M  Y  P  R  D  E  Q  E  G  N  F  R  I  L  G  Y  Q  W  R  N  L  H  F  N  E  E  T  R  Q  S  T  V  K  I  M  A  A  Y  R  D  S  A  P  G  S  I  Y  L  M  Q  Q  A  E  C  L  A  V  P   : Y  V  K  S  M  V  S  A  G  L  A  T  I  A  S  C  R  F  D  L  E  S  A  V  C  G  R  K  P  M  K  I  L  C  I  G  H  G  G  G  S  I  P  L  F  L  A  S  K  I  Q   : G  A  E  V  H  I  A  E  I  D  P  V  V  I  S  A  S  V  Q  A  M  G  F  P  S  Y  S  V  M  T  P  S  G  S  R  A  H  S  T  P  D  L  I  Q  E  V  Q  W  K  G  I  H  E  R  I  Q  L  H  E  S  D  A  E  K  F  L  L  E  N  K  N  L  Y  D  L  V  F  I  D  A  Y  D  G  E  D  I  F  P  H  T  L  W  D  P  H  S  P  F  L  N  A  L  A  D  Q  L  H  P  E  H  G  T  V  V  V  N  L  H  S  D  V  D  F  R  D  D  D  F  I  P  P  G  S  H  L  L  P  M  G  K  Y  I  S  K  V  C  R  S  Y  K  E  A  L  L  G  S  K  S  S  Y  N  G  L  A  Y  V  V  S  V  P  W  V  C  N  T  S  L  V  V  S  R  G  L  E  K  S  N  R  D  M  V  M  R  N  I  M  S  K  S  L  V  V  E  N  T  L  D  L  P  F  S  C  M  Q  Y  L  K  R  G  F  T  L  V  N  *  Y  E  L  K  V  F  C  L   </first_frame>
            <second_frame>  *  R  G  F  L  V  E  I  C  *  S  C  L  N  G  I  C  H  G  C  S  *  D  D  Y  Q  R  R  F  D  K  L  *  K  M  K  A  T  G  F  I  H  R  N  G  G  A  Q  L  P  V  V  A  T  Q  F  S  D  Q  F  P  I  K  E  T  A  S  F  L  S  *  L  T  L  L  P  N  Q :   K  T  V  I  G  G  K  Q  R  I  G  F  K  R  G  M  K  R  C  I  Q  E  M  N  R  K  G  I  S  G  F  L  V  T  N  G  G  I  F  T  L  M  R  R  L  V  K  A  Q  L  K  *  W  L  L  I  G  I  Q  L  L  V  L  Y  T  *  C  S  R  Q  S  V  S  L  F  H  :  M  *  R  A  W  S  L  L  G  W  L  P  L  H  L  V  D  S  I  L  K  V  Q  F  V  G  E  N  Q  *  K  F  Y  A  L  G  M  A  E  E  A  Y  R  C  F  W  L  V  K  S  K  :  V  L  K  C  T  *  L  K  S  T  L  W  *  S  Q  P  Q  F  K  Q  W  G  S  H  L  T  Q  L  *  L  H  L  V  A  V  H  T  Q  L  L  I  L  S  K  K  F  N  G  K  A  F  M  R  G  F  N  Y  M  N  Q  M  L  R  N  S  S  S  R  T  K  I  F  M  I  L  F  S  *  T  H  M  T  G  K  I  S  F  L  T  P  Y  G  I  H  T  L  H  S  S  M  L  S  Q  T  N  F  T  L  S  M  E  L  L  S  *  T  F  T  Q  M  *  T  S  G  M  M  I  S  F  H  L  V  L  T  F  C  Q  W  E  S  I  F  R  K  C  A  D  H  I  K  K  L  Y  *  G  V  R  V  P  I  M  V  W  L  M  *  F  L  C  L  G  Y  V  I  H  L  L  L  *  A  E  V  *  R  N  L  I  E  I  W  L  *  G  I  S  C  Q  N  P  *  L  L  R  I  L  L  T  C  H  F  L  V  C  N  I  *  K  E  V  L  L  W  L  I  N  M  N  *  K  Y  F  A  F  </second_frame>
            <third_frame>   R  E  G  F  W  W  K  Y  V  E  V  A  *  T  E  F  A  M  A  A  A  E  T  I  I  N  G  D  S  T  N  C  R  R  *  R  R  L  V  L  F  I  G  M  V  G  H  N  F  R  W  W  R  H  S  F  P  I  N  F  R  *  R  K  R  R  R  F  C  R  S  L  P  F  F  Q  T   : R  K  L  L  L  G  E  N  R  E  L  A  S  K  E  V  *  K  D  V  S  K  R  *  T  G  R  E  F  Q  D  S  W  L  P  M  A  E  S  S  L  *  *  G  D  S  S  K  H  S  *  N  N  G  C  L  *  G  F  S  S  W  F  Y  I  L  D  A  A  G  R  V  S  R  C  S  I :   C  E  E  H  G  L  C  W  V  G  Y  H  C  I  L  *  I  R  S  *  K  C  S  L  W  E  K  T  N  E  N  F  M  H  W  A  W  R  R  K  H  T  V  V  F  G  *  *  N  P  R :   C  *  S  A  H  S  *  N  R  P  C  G  N  L  S  L  S  S  S  N  G  V  P  I  L  L  S  Y  D  S  I  W  *  P  C  T  L  N  S  *  S  Y  P  R  S  S  M  E  R  H  S  *  E  D  S  I  T  *  I  R  C  *  E  I  P  P  R  E  Q  K  S  L  *  S  C  F  H  R  R  I  *  R  G  R  Y  L  S  S  H  P  M  G  S  T  L  S  I  P  Q  C  S  R  R  P  T  S  P  *  A  W  N  C  C  R  K  P  S  L  R  C  R  L  Q  G  *  *  F  H  S  T  W  F  S  P  F  A  N  G  K  V  Y  F  E  S  V  P  I  I  *  R  S  S  I  R  E  *  E  F  L  *  W  S  G  L  C  S  F  C  A  L  G  M  *  Y  I  S  C  C  E  Q  R  F  R  E  I  *  *  R  Y  G  Y  E  E  Y  H  V  K  I  P  S  C  *  E  Y  S  *  L  A  I  F  L  Y  A  I  S  E  K  R  F  Y  S  G  *  L  I  *  I  K  S  I  L  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14342" stop="14575"/>
                    <exon start="14671" stop="14899"/>
                    <exon start="15433" stop="15585"/>
                    <exon start="16545" stop="17218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LERVFGGNMLKLPKRNLPWLQLRRLSTAIRQTVEDEGDWFYSSEWWGTTSGGGDTVFRSISDKGNGVVSVVAYPSSKPENCYWGKTENWLQKRYEKMYPRDEQEGNFRILGYQWRNLHFNEETRQSTVKIMAAYRDSAPGSIYLMQQAECLAVPYVKSMVSAGLATIASCRFDLESAVCGRKPMKILCIGHGGGSIPLFLASKIQGAEVHIAEIDPVVISASVQAMGFPSYSVMTPSGSRAHSTPDLIQEVQWKGIHERIQLHESDAEKFLLENKNLYDLVFIDAYDGEDIFPHTLWDPHSPFLNALADQLHPEHGTVVVNLHSDVDFRDDDFIPPGSHLLPMGKYISKVCRSYKEALLGSKSSYNGLAYVVSVPWVCNTSLVVSRGLEKSNRDMVMRNIMSKSLVVENTLDLPFSCMQYLKRGFTLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26684" PGL_stop="25252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26684" e_stop="26535"/>
            <exon e_start="25982" e_stop="25869"/>
            <exon e_start="25650" e_stop="25252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26684" e_stop="26535" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26534" i_stop="25983" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25982" e_stop="25869" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25868" i_stop="25651" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="25650" e_stop="25252" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26684" stop="26535"/>
              <exon start="25982" stop="25869"/>
              <exon start="25650" stop="25252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG : GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG : ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</gDNA_template>
            <first_frame> S  K  K  L  R  L  N  V  V  A  Q  F  L  A  K  Y  F  F  I  S  A  L  L  V  I  I  I  I  Q  M  G  L  P  Q  N  H  H  H  H  H  L  H  T  G  L  H  L  L  Q  Q  :  G  Q  A  K  T  Q  G  K  Q  W  L  *  Y  *  E  E  Q  Q  E  L  V  F  *  S  F  A  C  S  L  Q  G  T  K  *  R  N  M  M  :  I  I  E  G  I  S  C  V  L  L  L  *  K  A  G  K  S  F  L  *  G  G  F  F  P  C  Q  D  F  L  P  R  R  K  I  Y  F  L  G  N  S  *  K  K  V  R  E  F  V  S  C  N  S  W  N  Y  *  V  K  R  E  K  Q  K  Y  Y  F  G  D  I  N  F  W  R  N  D  V  T  I  H  V  F  F  V  N  Y  E  E  D  W  Q  E  H  Y  N  V  F  L  A  F  F  S  Y  G  H  V  H  V  V  S  F  L  F  V  S  E  *  L  F  H  P  F  F  S  S  S  K  V  F  Y  F  *  K </first_frame>
            <second_frame>  P  K  S  S  G  *  M  W  *  L  N  F  W  P  N  I  S  S  *  V  L  C  *  L  *  L  L  S  K  W  G  S  H  K  I  I  I  I  I  I  F  I  L  V  S  I  S  F  S  R :   D  R  P  K  H  R  E  N  S  G  Y  N  T  R  R  S  S  R  S  W  F  S  S  H  L  H  A  L  C  K  E  P  N  E  E  T  *  * :   L  L  K  G  S  A  V  Y  Y  Y  Y  K  R  L  A  K  A  F  Y  E  V  D  S  F  L  V  K  I  F  Y  L  E  G  K  Y  I  F  L  E  I  P  E  K  K  *  G  S  L  *  A  V  I  L  G  I  I  R  *  K  E  K  N  K  N  T  I  L  G  T  *  I  F  G  E  M  M  *  Q  Y  M  F  F  L  S  T  M  K  K  I  G  K  S  I  I  M  F  F  W  P  F  S  P  M  A  M  C  M  L  Y  L  F  S  L  S  L  N  N  C  F  T  L  F  F  L  L  L  K  F  F  T  F  R   </second_frame>
            <third_frame>   Q  K  A  Q  V  E  C  G  S  S  I  S  G  Q  I  F  L  H  K  C  F  V  S  Y  N  Y  Y  P  N  G  A  P  T  K  S  S  S  S  S  S  S  Y  W  S  P  S  P  S  A   : G  T  G  Q  N  T  G  K  T  V  A  I  I  L  G  G  A  A  G  V  G  F  L  V  I  C  M  L  F  A  R  N  Q  M  K  K  H  D   : D  Y  *  R  D  Q  L  C  I  I  I  I  K  G  W  Q  K  L  F  M  R  W  I  L  S  L  S  R  F  S  T  *  K  E  N  I  F  S  W  K  F  L  K  K  S  E  G  V  C  E  L  *  F  L  E  L  L  G  K  K  R  K  T  K  I  L  F  W  G  H  K  F  L  E  K  *  C  N  N  T  C  F  F  C  Q  L  *  R  R  L  A  R  A  L  *  C  F  F  G  L  F  L  L  W  P  C  A  C  C  I  F  S  L  C  L  *  I  I  V  S  P  F  F  F  F  F  *  S  F  L  L  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26682" stop="26535"/>
                    <exon start="25982" stop="25869"/>
                    <exon start="25650" stop="25643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAQVECGSSISGQIFLHKCFVSYNYYPNGAPTKSSSSSSSYWSPSPSAGTGQNTGKTVAIILGGAAGVGFLVICMLFARNQMKKHDDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27241" PGL_stop="26709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27241" e_stop="26709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="27241" e_stop="26709" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27241" stop="26709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</gDNA_template>
            <first_frame> *  I  C  I  W  K  H  *  F  S  V  Q  R  L  C  K  T  G  I  I  R  S  I  W  C  L  L  T  S  P  F  N  P  F  W  H  S  C  F  T  I  F  K  I  Q  V  L  Q  N  Y  N  W  Y  W  P  N  Y  N  N  W  S  F  S  V  *  R  *  P  Y  *  Y  *  L  L  Q  L  C  K  W  F  A  N  T  D  *  Q  A  L  W  H  P  C  C  C  K  N  P  A  F  R  L  L  H  A  V  *  S  L  R  L  P  T  N  L  R  N  G  D  V  V  Q  D  L  *  W  K  K  C  T  R  E  W  I  *  G  E  E  G  Y  C  F  F  N  T  G  K  W  N  V  *  C  *  *  W  I  L  H  F  K  L  *  V  C  F  C  F  G  T  M  *  R  G  C  R  L  F  *   </first_frame>
            <second_frame>  E  S  A  S  G  N  T  N  L  V  Y  K  G  C  A  K  Q  A  L  S  D  P  S  G  V  Y  S  Q  A  L  S  T  L  F  G  T  L  V  S  Q  S  S  K  S  K  F  Y  K  T  T  T  G  T  G  Q  T  T  I  T  G  L  F  Q  C  R  G  D  L  T  N  I  D  C  Y  N  C  V  N  G  L  P  I  L  I  D  K  L  C  G  T  P  V  A  A  R  I  Q  L  L  G  C  Y  M  L  Y  E  V  S  G  F  P  Q  I  S  G  M  E  M  L  Y  K  T  C  S  G  K  N  A  P  G  S  G  F  E  E  K  R  D  T  A  F  S  T  L  E  N  G  M  S  S  A  N  N  G  F  Y  T  S  N  Y  E  S  V  F  V  L  G  Q  C  E  G  D  V  G  S  S  D  </second_frame>
            <third_frame>   N  L  H  L  E  T  L  I  *  C  T  K  V  V  Q  N  R  H  Y  Q  I  H  L  V  F  T  H  K  P  F  Q  P  F  L  A  L  L  F  H  N  L  Q  N  P  S  S  T  K  L  Q  L  V  L  A  K  L  Q  *  L  V  F  F  S  V  E  V  T  L  L  I  L  I  V  T  T  V  *  M  V  C  Q  Y  *  L  T  S  S  V  A  P  L  L  L  Q  E  S  S  F  *  A  V  T  C  C  M  K  S  Q  A  S  H  K  S  Q  E  W  R  C  C  T  R  L  V  V  E  K  M  H  Q  G  V  D  L  R  R  R  G  I  L  L  F  Q  H  W  K  M  E  C  L  V  L  I  M  D  F  T  L  Q  I  M  S  L  F  L  F  W  D  N  V  K  G  M  *  A  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27240" stop="26710"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESASGNTNLVYKGCAKQALSDPSGVYSQALSTLFGTLVSQSSKSKFYKTTTGTGQTTITGLFQCRGDLTNIDCYNCVNGLPILIDKLCGTPVAARIQLLGCYMLYEVSGFPQISGMEMLYKTCSGKNAPGSGFEEKRDTAFSTLENGMSSANNGFYTSNYESVFVLGQCEGDVGSSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="32826" PGL_stop="33893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32826" e_stop="33243"/>
            <exon e_start="33341" e_stop="33413"/>
            <exon e_start="33534" e_stop="33614"/>
            <exon e_start="33863" e_stop="33893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.548" e_score="0.998"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32826" e_stop="33243" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.548">
            <gDNA_intron_boundary i_start="33244" i_stop="33340" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33341" e_stop="33413" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33414" i_stop="33533" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33534" e_stop="33614" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33615" i_stop="33862" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33863" e_stop="33893" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32826" stop="33243"/>
              <exon start="33341" stop="33413"/>
              <exon start="33534" stop="33614"/>
              <exon start="33863" stop="33893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG : TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG : ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA : GGAACAAATCAATCATTTGTATTCACAACTC</gDNA_template>
            <first_frame> H  I  L  *  M  *  E  I  E  E  R  S  N  H  F  N  Q  I  L  L  R  G  E  V  K  V  S  R  C  A  I  N  L  W  M  S  L  R  F  T  M  I  I  K  R  Y  Q  I  F  I  Q  K  K  V  K  M  V  P  S  G  V  Q  S  V  *  R  R  R  *  M  Q  T  T  I  M  E  S  L  L  L  L  G  A  L  P  A  V  L  K  L  L  K  M  L  L  I  D  T  A  L  S  S  H  W  P  I  S  L  L  I  L  F  S  L  L  Q  I  C  M  I  F  S  S  L  P  F  L  I  *  *  K  V  V  N  G  S  C  Y  I   : V  R  P  D  T  V  Y  H  S  A  L  L  F  A  R  V  L  I  F  L  V  L  A  C  * :   L  L  V  I  R  R  V  L  C  L  V  G  C  S  R  H  R  *  S  L  L  Q  R  G  N  T  K :   E  Q  I  N  H  L  Y  S  Q  L </first_frame>
            <second_frame>  I  F  C  E  C  K  R  S  K  R  G  Q  T  T  S  I  K  F  F  Y  V  E  K  *  K  F  L  V  A  R  *  T  S  G  *  V  *  G  S  Q  *  L  *  R  D  T  R  Y  S  S  R  R  R  *  K  W  F  H  Q  E  F  S  L  C  E  G  D  G  K  C  R  Q  R  *  W  R  A  Y  F  C  W  E  H  C  Q  R  F  *  N  F  *  R  C  S  *  *  T  Q  L  *  A  V  T  G  L  S  H  Y  *  F  C  F  H  Y  S  K  F  V  *  F  F  P  V  F  P  S  *  Y  S  E  R  L  S  M  G  L  V  I  *  :  Y  G  Q  T  R  Y  I  T  P  H  S  Y  S  Q  E  C  *  Y  F  W  S  L  L  A   : D  Y  W  *  *  E  G  C  C  V  W  W  V  A  R  G  T  V  K  A  Y  C  K  E  E  I  P   : R  N  K  S  I  I  C  I  H  N   </second_frame>
            <third_frame>   Y  F  V  N  V  R  D  R  R  E  V  K  P  L  Q  S  N  S  F  T  W  R  S  K  S  F  S  L  R  D  K  P  L  D  E  F  E  V  H  N  D  Y  K  E  I  P  D  I  H  P  E  E  G  E  N  G  S  I  R  S  S  V  C  V  K  E  T  V  N  A  D  N  D  N  G  E  P  T  S  A  G  S  I  A  S  G  S  E  T  F  E  D  A  P  D  R  H  S  F  E  Q  S  L  A  Y  L  T  T  D  S  V  F  I  T  P  N  L  Y  D  F  F  Q  S  S  L  P  N  I  V  K  G  C  Q  W  V  L  L  Y  S :   T  A  R  H  G  I  S  L  R  T  L  I  R  K  S  A  D  I  S  G  P  C  L  L  :  I  T  G  D  K  K  G  A  V  F  G  G  L  L  E  A  P  L  K  P  T  A  K  R  K  Y  Q  :  G  T  N  Q  S  F  V  F  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32828" stop="33243"/>
                    <exon start="33341" stop="33413"/>
                    <exon start="33534" stop="33614"/>
                    <exon start="33863" stop="33892"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVNVRDRREVKPLQSNSFTWRSKSFSLRDKPLDEFEVHNDYKEIPDIHPEEGENGSIRSSVCVKETVNADNDNGEPTSAGSIASGSETFEDAPDRHSFEQSLAYLTTDSVFITPNLYDFFQSSLPNIVKGCQWVLLYSTARHGISLRTLIRKSADISGPCLLITGDKKGAVFGGLLEAPLKPTAKRKYQGTNQSFVFTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43789" PGL_stop="35545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43789" e_stop="43685"/>
            <exon e_start="43557" e_stop="43472"/>
            <exon e_start="42716" e_stop="42645"/>
            <exon e_start="42526" e_stop="42464"/>
            <exon e_start="42186" e_stop="42100"/>
            <exon e_start="41196" e_stop="41055"/>
            <exon e_start="40966" e_stop="40845"/>
            <exon e_start="40661" e_stop="40545"/>
            <exon e_start="39878" e_stop="39783"/>
            <exon e_start="39645" e_stop="39586"/>
            <exon e_start="39022" e_stop="38948"/>
            <exon e_start="38097" e_stop="37993"/>
            <exon e_start="37877" e_stop="37761"/>
            <exon e_start="37653" e_stop="37576"/>
            <exon e_start="37467" e_stop="37371"/>
            <exon e_start="36859" e_stop="36808"/>
            <exon e_start="36275" e_stop="36205"/>
            <exon e_start="36116" e_stop="35545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.924"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.804" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="43789" e_stop="43685" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43684" i_stop="43558" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43557" e_stop="43472" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43471" i_stop="42717" i_length="755"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42716" e_stop="42645" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42644" i_stop="42527" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42526" e_stop="42464" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42463" i_stop="42187" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42186" e_stop="42100" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42099" i_stop="41197" i_length="903"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41196" e_stop="41055" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="41054" i_stop="40967" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40966" e_stop="40845" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="40844" i_stop="40662" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40661" e_stop="40545" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40544" i_stop="39879" i_length="666"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39878" e_stop="39783" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39782" i_stop="39646" i_length="137"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39645" e_stop="39586" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39585" i_stop="39023" i_length="563"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="39022" e_stop="38948" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="38947" i_stop="38098" i_length="850"/>
          </intron>
          <exon e_serial="12" e_score="0.990">
            <gDNA_exon_boundary e_start="38097" e_stop="37993" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37992" i_stop="37878" i_length="115"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37877" e_stop="37761" e_length="117"/>
          </exon>
          <intron i_serial="13" don_prob="0.804" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37760" i_stop="37654" i_length="107"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="37653" e_stop="37576" e_length="78"/>
          </exon>
          <intron i_serial="14" don_prob="0.776" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37575" i_stop="37468" i_length="108"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="37467" e_stop="37371" e_length="97"/>
          </exon>
          <intron i_serial="15" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37370" i_stop="36860" i_length="511"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="36859" e_stop="36808" e_length="52"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36807" i_stop="36276" i_length="532"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="36275" e_stop="36205" e_length="71"/>
          </exon>
          <intron i_serial="17" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36204" i_stop="36117" i_length="88"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="36116" e_stop="35545" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43789" stop="43685"/>
              <exon start="43557" stop="43472"/>
              <exon start="42716" stop="42645"/>
              <exon start="42526" stop="42464"/>
              <exon start="42186" stop="42100"/>
              <exon start="41196" stop="41055"/>
              <exon start="40966" stop="40845"/>
              <exon start="40661" stop="40545"/>
              <exon start="39878" stop="39783"/>
              <exon start="39645" stop="39586"/>
              <exon start="39022" stop="38948"/>
              <exon start="38097" stop="37993"/>
              <exon start="37877" stop="37761"/>
              <exon start="37653" stop="37576"/>
              <exon start="37467" stop="37371"/>
              <exon start="36859" stop="36808"/>
              <exon start="36275" stop="36205"/>
              <exon start="36116" stop="35545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA : TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT : GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG : ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA : GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG : CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG : TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG : ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG : GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG : GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG : ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG : GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG : GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG : GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA : ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG : TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG : AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG : GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</gDNA_template>
            <first_frame> S  F  I  S  L  A  L  T  L  H  Q  L  L  L  C  C  L  N  P  S  S  T  S  L  P  F  S  L  F  Q  Q  *  T  V  Q  :  F  P  A  R  C  R  R  I  Q  *  F  R  R  S  P  D  S  F  S  R  S  V  *  L  K  D  I  S  L :   I  M  A  N  V  L  L  L  E  S  H  *  R  Q  M  T  S  S  L  L  K  L  A  R :   *  L  N  P  D  L  Y  R  L  L  A  F  L  G  C  W  E  C  S  K  * :   N  G  M  V  *  C  C  Q  I  L  H  W  N  N  N  C  I  L  Q  G  K  S  *  A  M  L  Y  I  S :   M  M  L  L  A  G  *  L  Q  G  *  K  R  K  G  M  R  Q  G  G  Y  L  P  R  L  K  D  K  Y  P  W  Q  P  L  Q  Q  L  A  L  L  L  *  A  T  G  K  E  :  L  P  R  M  R  M  W  A  L  M  E  R  K  F  A  L  G  Y  H  T  L  S  L  R  L  L  L  N  V  M  L  V  F  H  N  K  G  K  N  D  R :   Y  P  Q  H  W  P  L  W  M  L  W  R  D  I  P  N  *  I  V  F  P  F  T  K  P  T  S  R  A  F  C  L  W  I  F  T  M  L  R :   T  *  L  L  L  V  E  S  I  Q  T  L  W  S  L  I  D  L  Q  D  R  S  Y  Q  H  *  V  V  I  Q  R  G :   L  P  V  L  N  L  R  L  R  V  N  *  W  S  L  V  Q  Q  I  R :   Q  F  V  C  G  K  V  P  K  M  E  I  M  T  V  G  M  S  *  R  I  I  L  Q  R :   C  K  L  S  L  S  M  Q  P  I  I  I  L  L  L  L  L  L  I  A  R  G  A  F  M  I  L  L  L  V  Y  A  L  H  R :   *  Q  M  L  Q  N  L  R  A  I  L  L  Q  L  S  T  L  M  V  *  S  L  E  Q  G  L  Q  G  L  W  S  R  Y  G  M  *  K  V  R :   Q  M  L  Q  N  L  M  A  M  L  G  L  *  L  P  F  P  F  Q  K  M  V  I  S  *  Q :   L  L  L  M  M  V  L  N  F  G  I  Y  A  N  *  R  T  S  K  L  S  L  L  T  M  I  T  H  Q  L  N  Q  :  W  N  L  T  I  V  E  V  I  L  P  *  E  A  Q  I  Y   : E  F  I  K  S  P  A  S  R  L  N  G  I  P  S  K  P  S  P  T  Y  Q  A  Q  :  A  K  Q  H  V  *  N  L  V  Q  M  Q  H  I  *  L  S  D  L  W  T  V  I  *  E  Y  S  G  C  L  V  R  I  K  W  R  I  R  L  I  S  S  V  K  A  N  S  F  F  L  C  I  C  C  K  I  T  V  L  S  R  G  *  E  V  D  E  S  P  V  L  *  Y  V  L  L  V  F  A  K  F  W  G  W  A  S  *  *  T  *  P  Q  T  *  D  N  I  *  S  A  E  F  I  R  S  S  Q  N  Q  P  W  V  I  S  I  L  L  Y  H  S  C  V  T  I  L  P  F  L  E  A  K  L  *  M  D  S  D  Q  L  Q  Y  I  D  I  S  C  L  V  I  V  D  I  K  C  T  L  Y  A  I  I  F  F  H  V  Q  E  L  I  *  I  H  C  C  V  H  H  E  R  L  K  V  K  I  V  N  L  T  C  S  L   </first_frame>
            <second_frame>  H  S  S  P  S  L  S  L  C  I  S  S  F  C  A  A  *  T  L  A  L  P  L  C  L  S  L  S  F  N  N  E  L  F  N :   F  R  R  G  A  G  G  S  S  S  F  E  E  V  R  T  P  F  R  E  A  F  N  *  K  T  Y  L   : *  L  W  Q  M  S  Y  Y  W  R  A  I  D  G  R  *  H  H  P  C  *  N  W  Q   : D  S  *  T  P  T  C  T  G  C  *  H  S  W  D  V  G  N  V  P  N   : R  M  G  W  S  D  A  V  K  F  C  I  G  T  T  I  A  Y  C  K  A  R  A  E  P  C  F  I  S   : A  *  C  C  L  Q  G  N  C  K  A  E  K  G  K  G  *  G  K  G  V  T  C  P  G  *  K  T  N  T  H  G  S  H  Y  S  S  W  H  Y  C  C  K  Q  R  E  K  S :   C  R  G  *  G  C  G  P  *  W  K  E  N  S  P  W  D  I  T  L  C  H  *  D  S  Y  *  M  *  C  W  S  F  T  T  K  E  K  T  T   : D  T  R  N  I  G  P  C  G  C  C  G  E  I  Y  P  T  E  *  F  S  P  S  Q  N  Q  Q  A  G  H  F  V  S  G  Y  S  L  C  *   : G  H  N  C  Y  W  W  S  R  F  K  R  C  G  L  *  S  T  F  R  T  D  H  I  N  T  K  W  S  F  K  E   : G  Y  Q  C  *  I  C  G  *  G  *  T  S  G  L  W  F  S  R  *   : D  S  S  C  V  A  K  F  R  K  W  K  L  *  L  *  A  C  L  E  G  S  Y  C  R   : G  A  S  C  H  C  P  C  N  Q  *  L  F  C  Y  C  F  S  *  *  H  V  V  L  L  *  S  C  F  W  F  M  P  Y  T   : G  S  R  C  F  R  I  *  G  L  Y  F  C  S  F  P  P  *  W  S  D  P  W  N  R  D  F  R  V  F  G  Q  D  M  G  C  K  K  S   : G  K  C  C  K  I  *  W  P  C  W  V  C  N  C  H  F  L  F  R  K  W  L  F  L  S   : N  C  C  S  *  W  C  *  T  L  G  F  T  Q  I  E  E  L  Q  N  F  R  S  L  R  *  *  H  T  N  S  I  S :   G  I  *  P  *  W  K  L  S  C  L  R  R  L  R  Y  T  :  S  L  S  S  R  Q  R  Q  G  *  M  E  F  H  Q  N  L  P  R  L  I  R  H  R :   Q  S  N  M  S  E  I  W  S  R  C  S  I  Y  S  C  R  I  Y  G  P  *  S  K  N  I  R  A  A  W  *  G  S  N  G  G  L  G  S  F  P  A  L  K  Q  T  A  F  S  F  A  S  A  A  R  S  Q  C  Y  L  E  G  R  R  S  M  R  V  L  F  F  N  M  Y  F  W  F  L  L  N  F  G  G  G  Q  A  N  R  H  N  H  K  L  E  I  T  S  E  V  Q  S  L  F  G  H  P  K  T  S  L  G  L  L  V  F  C  C  I  I  L  V  *  P  Y  C  P  S  W  K  Q  N  S  E  W  I  V  I  S  Y  S  T  S  I  F  H  V  *  L  *  S  I  *  N  A  L  C  T  L  L  F  F  F  M  F  K  S  *  S  E  F  I  V  V  Y  I  M  K  G  S  K  *  K  *  *  I  *  L  V  V  C  </second_frame>
            <third_frame>   I  H  L  P  R  S  H  S  A  S  A  P  F  V  L  L  K  P  *  L  Y  L  F  A  F  L  S  L  S  T  M  N  C  S   : I  S  G  E  V  P  E  D  P  V  V  S  K  K  S  G  L  L  F  E  K  R  L  I  E  R  H  I  S  :  D  Y  G  K  C  P  I  T  G  E  P  L  T  A  D  D  I  I  P  V  K  T  G  K  :  I  V  K  P  R  P  V  Q  A  A  S  I  P  G  M  L  G  M  F  Q  I  :  E  W  D  G  L  M  L  S  N  F  A  L  E  Q  Q  L  H  T  A  R  Q  E  L  S  H  A  L  Y  Q  :  H  D  A  A  C  R  V  I  A  R  L  K  K  E  R  D  E  A  R  G  L  L  A  Q  A  E  R  Q  I  P  M  A  A  T  T  A  V  G  T  T  A  V  S  N  G  K  R   : V  A  E  D  E  D  V  G  P  D  G  K  K  I  R  P  G  I  S  H  S  V  I  E  T  L  T  E  C  N  A  G  L  S  Q  Q  R  K  K  R  Q  :  I  P  A  T  L  A  P  V  D  A  V  A  R  Y  T  Q  L  N  S  F  P  L  H  K  T  N  K  P  G  I  L  S  L  D  I  H  Y  A  K  :  D  I  I  A  T  G  G  V  D  S  N  A  V  V  F  D  R  P  S  G  Q  I  I  S  T  L  S  G  H  S  K  R  :  V  T  S  V  K  F  A  A  E  G  E  L  V  V  S  G  S  A  D  K  :  T  V  R  V  W  Q  S  S  E  N  G  N  Y  D  C  R  H  V  L  K  D  H  T  A  E  :  V  Q  A  V  T  V  H  A  T  N  N  Y  F  V  T  A  S  L  D  S  T  W  C  F  Y  D  L  A  S  G  L  C  L  T  Q  :  V  A  D  A  S  E  S  E  G  Y  T  S  A  A  F  H  P  D  G  L  I  L  G  T  G  T  S  G  S  L  V  K  I  W  D  V  K  S  Q  :  A  N  V  A  K  F  D  G  H  V  G  S  V  T  A  I  S  F  S  E  N  G  Y  F  L  A  :  T  A  A  H  D  G  V  K  L  W  D  L  R  K  L  K  N  F  K  T  F  A  P  Y  D  D  N  T  P  T  Q  S   : V  E  F  D  H  S  G  S  Y  L  A  L  G  G  S  D  I  R :   V  Y  Q  V  A  S  V  K  A  E  W  N  S  I  K  T  F  P  D  L  S  G  T   : G  K  A  T  C  L  K  F  G  P  D  A  A  Y  I  A  V  G  S  M  D  R  N  L  R  I  F  G  L  P  G  E  D  Q  M  E  D  *  A  H  F  Q  R  *  S  K  Q  L  F  P  L  H  L  L  Q  D  H  S  A  I  S  R  V  G  G  R  *  E  S  C  S  L  I  C  T  S  G  F  C  *  I  L  G  V  G  K  L  I  D  I  T  T  N  L  R  *  H  L  K  C  R  V  Y  S  V  I  P  K  P  A  L  G  Y  *  Y  S  V  V  S  F  L  C  N  H  I  A  L  P  G  S  K  T  L  N  G  *  *  S  V  T  V  H  R  Y  F  M  F  S  Y  S  R  Y  K  M  H  F  V  R  Y  Y  F  F  S  C  S  R  V  D  L  N  S  L  L  C  T  S  *  K  A  Q  S  K  N  S  K  F  N  L  *  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43730" stop="43685"/>
                    <exon start="43557" stop="43472"/>
                    <exon start="42716" stop="42645"/>
                    <exon start="42526" stop="42464"/>
                    <exon start="42186" stop="42100"/>
                    <exon start="41196" stop="41055"/>
                    <exon start="40966" stop="40845"/>
                    <exon start="40661" stop="40545"/>
                    <exon start="39878" stop="39783"/>
                    <exon start="39645" stop="39586"/>
                    <exon start="39022" stop="38948"/>
                    <exon start="38097" stop="37993"/>
                    <exon start="37877" stop="37761"/>
                    <exon start="37653" stop="37576"/>
                    <exon start="37467" stop="37371"/>
                    <exon start="36859" stop="36808"/>
                    <exon start="36275" stop="36205"/>
                    <exon start="36116" stop="36004"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLFAFLSLSTMNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARGLLAQAERQIPMAATTAVGTTAVSNGKRVAEDEDVGPDGKKIRPGISHSVIETLTECNAGLSQQRKKRQIPATLAPVDAVARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATGGVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYDCRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAAFHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFKTFAPYDDNTPTQSVEFDHSGSYLALGGSDIRVYQVASVKAEWNSIKTFPDLSGTGKATCLKFGPDAAYIAVGSMDRNLRIFGLPGEDQMED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36022" stop="35750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNGGLGSFPALKQTAFSFASAARSQCYLEGRRSMRVLFFNMYFWFLLNFGGGQANRHNHKLEITSEVQSLFGHPKTSLGLLVFCCIILV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64122" PGL_stop="65289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64122" e_stop="64467"/>
            <exon e_start="65032" e_stop="65289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.577" e_score="0.986"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="64122" e_stop="64467" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.577">
            <gDNA_intron_boundary i_start="64468" i_stop="65031" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="65032" e_stop="65289" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64122" stop="64467"/>
              <exon start="65032" stop="65289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG : TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAA</gDNA_template>
            <first_frame> G  L  V  F  F  F  *  N  Q  D  S  S  K  N  S  Y  F  V  V  G  G  E  S  G  G  *  G  F  F  H  V  V  Y  F  C  R  S  N  F  Y  F  F  N  S  Q  S  F  L  L  F  F  L  Y  F  V  L  K  *  T  F  *  R  T  N  C  I  S  Y  L  C  L  V  G  L  S  *  N  W  L  T  L  S  L  S  L  C  G  V  C  C  F  *  R  G  L  K  E  L  K  A  *  S  A  R  *  I  *  S  G  V  S  Y  F  F  G   : V  L  V  D  F  G  L  F  V  *  P  C  L  Y  C  G  R  *  R  K  K  V  H  F  I  C  F  L  M  F  N  H  L  G  G  G  I  W  K  T  E  T  W  T  R  M  N  L  I  K  K  V  Y  C  S  L  *  T  R  K  N  K  Q  R  R  I  V  V  C  R  Q  D  *  *  K  S  *  N  H  S  T  Y  V  D  *  K  </first_frame>
            <second_frame>  V  W  Y  S  S  S  R  I  K  I  R  L  K  T  V  I  L  L  L  E  V  K  V  V  D  E  V  S  S  M  W  Y  T  F  V  E  V  I  F  I  S  L  I  A  K  V  S  C  F  S  F  S  T  L  F  *  N  R  L  F  E  G  L  I  V  Y  L  I  F  V  *  W  G  C  L  E  I  G  *  H  *  V  Y  L  Y  V  V  F  V  V  S  E  G  D  *  K  S  L  K  L  D  L  Q  G  E  F  E  V  G  F  H  I  F  L  E  :  C  W  W  I  S  V  S  L  Y  N  R  V  Y  T  V  E  G  E  G  R  K  F  I  L  S  V  F  *  C  L  I  T  L  E  V  E  Y  G  K  Q  K  H  G  Q  G  *  T  *  *  R  R  F  I  A  A  C  E  Q  G  R  T  S  R  G  E  *  L  F  V  D  K  I  N  R  R  V  R  T  T  A  P  T  *  I  R  K </second_frame>
            <third_frame>   F  G  I  L  L  L  E  S  R  F  V  *  K  Q  L  F  C  C  W  R  *  K  W  W  M  R  F  L  P  C  G  I  L  L  *  K  *  F  L  F  L  *  *  P  K  F  L  A  F  L  S  L  L  C  F  K  I  D  F  L  K  D  *  L  Y  I  L  S  L  F  S  G  V  V  L  K  L  A  N  I  K  F  I  F  M  W  C  L  L  F  L  K  G  I  E  R  A  *  S  L  I  C  K  V  N  L  K  W  G  F  I  F  F  W  S :   A  G  G  F  R  S  L  C  I  T  V  F  I  L  W  K  V  K  E  E  S  S  F  Y  L  F  S  N  V  *  S  P  W  R  W  N  M  E  N  R  N  M  D  K  D  E  P  N  K  E  G  L  L  Q  L  V  N  K  E  E  Q  A  E  E  N  S  C  L  S  T  R  L  I  E  E  L  E  P  Q  H  L  R  R  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0008K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="65386" PGL_stop="67188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65386" e_stop="66799"/>
            <exon e_start="66910" e_stop="67188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65386" e_stop="66799" e_length="1414"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66800" i_stop="66909" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="66910" e_stop="67188" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65386" stop="66799"/>
              <exon start="66910" stop="67188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG : GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTT</gDNA_template>
            <first_frame> K  I  L  P  S  L  P  *  I  G  T  H  T  L  H  M  *  L  L  F  K  D  A  N  Y  I  K  E  F  R  F  K  R  G  *  K  *  K  S  P  H  *  W  *  S  G  D  R  M  S  S  N  C  G  D  *  V  K  L  C  P  *  L  L  R  G  V  D  S  W  C  Y  N  W  *  *  E  Y  A  E  H  F  K  E  S  L  T  *  S  I  W  I  C  *  L  Y  C  *  F  W  K  G  K  Y  K  *  Q  *  R  R  K  F  F  *  F  H  E  L  S  R  W  F  *  C  Q  F  S  T  E  A  T  E  G  D  D  R  S  W  I  *  A  C  T  Q  K  G  S  F  C  I  *  Y  S  F  D  M  L  R  S  I  M  S  F  S  S  C  P  Y  F  S  R  N  V  P  E  E  M  E  K  W  F  T  T  L  C  L  F  H  R  W  *  K  G  S  L  C  S  *  S  A  G  D  *  L  T  *  *  *  V  S  R  L  C  L  H  I  S  F  K  T  R  K  Q  K  G  M  R  L  L  C  K  G  I  T  T  C  R  *  N  D  C  V  N  F  S  D  T  Q  P  N  Q  V  G  D  Y  G  D  A  I  C  C  V  W  F  H  G  S  I  Y  G  *  D  T  N  K  S  Y  P  Q  E  E  Q  K  V  G  K  E  S  N  R  C  V  Q  N  *  S  V  L  *  A  E  K  L  I  Q  V  R  G  N  K  R  H  S  *  R  C  F  V  D  A  I  H  R  Y  V  *  *  L  L  F  M  R  Q  C  S  F  R  S  A  D  S  A  K  F  *  A  G  C  R  C  Y  Q  R  S  S  *  *  Q  L  Q  G  G  R  E  G  W  L  G  Y  E  V  S  Q  E  I  S  D  W  K  *  K  C  T  S  *  D  I  G  G  M  S  F  T  W  H  Q  *  L  L  N  K  H  R  C  Y  N  S  K  W  F  S  W  W  T  *  K  Q  T  C  W  A  V  K  P  V  G  A  V  E  L  W  W  A  L  *  L  W  R  L  G  S  R  V  P  P  H  S  S  *  N  W  E  *  S  F  I  T  N  Y  I  R  G  L  S  N  F  *  S  L  Y  T   : G  F  E  T  K  C  T  S  H  E  N  V  E  Y  S  *  W  F  V  L  H  P  F  S  F  D  S  I  S  F  A  V  F  R  H  S  C  C  F  H  S  *  T  *  S  F  P  T  T  E  T  V  Q  E  V  K  *  D  D  T  K  Y  G  I  C  C  Y  S  S  L  S  L  K  E  V  R  Q  I  D  H  *  K  W  F  K  D  I  T  Y  D  C  L  S  </first_frame>
            <second_frame>  R  Y  F  L  R  C  L  E  L  V  H  I  H  S  T  C  N  F  S  S  K  M  Q  I  I  S  K  S  S  G  S  R  E  V  R  N  E  N  L  H  T  N  G  N  L  A  T  E  C  P  Q  T  V  G  I  E  S  S  Y  V  P  D  S  S  A  E  W  I  L  G  A  I  T  G  S  K  S  M  L  N  I  L  K  S  P  L  L  N  Q  F  G  S  V  N  C  T  V  D  S  G  K  E  N  I  N  D  S  E  E  G  S  F  S  D  F  M  S  S  P  G  G  F  S  V  S  S  A  Q  K  L  Q  K  E  M  T  D  H  G  S  E  H  V  H  R  R  V  L  S  V  S  S  T  A  S  T  C  S  D  Q  S  C  L  S  A  A  A  P  I  S  Q  G  M  F  Q  R  R  W  K  N  G  L  P  H  Y  V  F  S  I  D  G  K  K  E  V  Y  V  A  D  L  L  E  I  D  S  P  D  D  K  F  L  D  Y  V  Y  T  F  H  S  R  Q  E  S  K  K  E  C  A  F  S  A  R  E  S  Q  L  V  G  K  M  T  V  S  T  S  V  T  L  S  P  T  K  L  E  I  M  E  T  R  F  V  V  F  G  S  M  D  Q  Y  M  D  E  I  Q  T  S  H  I  L  R  K  N  K  K  L  A  K  K  V  T  D  V  F  R  T  S  Q  S  Y  K  Q  R  S  L  S  K  F  G  G  T  S  A  I  L  E  D  A  S  W  T  P  S  I  D  M  Y  D  D  Y  Y  S  C  G  N  A  L  L  D  Q  Q  I  P  P  N  F  E  L  A  A  V  V  T  R  D  P  L  N  D  S  S  K  E  A  E  K  G  G  W  G  M  K  F  L  K  K  S  P  T  G  S  K  N  A  P  P  E  I  S  V  E  C  R  S  R  G  T  S  D  C  S  T  S  T  D  V  I  I  P  S  G  F  H  G  G  P  R  S  R  H  A  G  P  S  S  L  L  E  R  W  S  S  G  G  H  C  D  C  G  G  W  D  L  G  C  P  L  T  V  L  K  T  G  N  E  A  S  S  Q  T  T  S  G  D  C  Q  T  F  D  L  Y  I  Q  :  G  L  K  Q  S  A  P  V  M  K  M  S  N  I  H  D  G  L  Y  Y  I  H  F  H  S  T  L  S  A  L  Q  S  F  A  I  A  A  A  F  I  H  R  H  S  P  F  L  R  P  K  L  Y  R  K  *  S  K  M  T  P  S  M  V  S  V  V  I  A  L  F  L  *  K  K  S  D  K  S  T  I  R  N  G  S  K  I  *  H  M  I  V  S  L </second_frame>
            <third_frame>   D  T  S  F  A  A  L  N  W  Y  T  Y  T  P  H  V  T  S  L  Q  R  C  K  L  Y  Q  R  V  Q  V  Q  E  R  L  E  M  K  I  S  T  L  M  V  I  W  R  P  N  V  L  K  L  W  G  L  S  Q  V  M  S  L  T  P  P  R  S  G  F  L  V  L  *  L  V  V  R  V  C  *  T  F  *  R  V  P  Y  L  I  N  L  D  L  L  T  V  L  L  I  L  E  R  K  I  *  M  T  V  K  K  E  V  F  L  I  S  *  A  L  P  V  V  L  V  S  V  Q  H  R  S  Y  R  R  R  *  Q  I  M  D  L  S  M  Y  T  E  G  F  F  L  Y  L  V  Q  L  R  H  A  Q  I  N  H  V  F  Q  Q  L  P  L  F  L  K  E  C  S  R  G  D  G  K  M  V  Y  H  I  M  S  F  P  *  M  V  K  R  K  F  M  *  L  I  C  W  R  L  T  H  L  M  I  S  F  S  I  M  F  T  H  F  I  Q  D  K  K  A  K  R  N  A  P  S  L  Q  G  N  H  N  L  *  V  K  *  L  C  Q  L  Q  *  H  S  A  Q  P  S  W  R  L  W  R  R  D  L  L  C  L  V  P  W  I  N  I  W  M  R  Y  K  Q  V  I  S  S  G  R  T  K  S  W  Q  R  K  *  Q  M  C  S  E  L  V  S  L  I  S  R  E  A  Y  P  S  S  G  E  Q  A  P  F  L  K  M  L  R  G  R  H  P  *  I  C  M  M  I  I  I  H  A  A  M  L  F  *  I  S  R  F  R  Q  I  L  S  W  L  P  L  L  P  E  I  L  L  M  T  A  P  R  R  Q  R  R  V  A  G  V  *  S  F  S  R  N  L  R  L  E  V  K  M  H  L  L  R  Y  R  W  N  V  V  H  V  A  P  V  I  A  Q  Q  A  Q  M  L  *  F  Q  V  V  F  M  V  D  L  E  A  D  M  L  G  R  Q  A  C  W  S  G  G  A  L  V  G  T  V  I  V  E  A  G  I  S  G  A  P  S  Q  F  L  K  L  G  M  K  L  H  H  K  L  H  P  G  T  V  K  L  L  I  S  I  Y  R :   V  *  N  K  V  H  Q  S  *  K  C  R  I  F  M  M  V  C  I  T  S  I  F  I  R  L  Y  Q  L  C  S  L  S  P  *  L  L  L  S  F  I  D  I  V  L  S  Y  D  R  N  C  T  G  S  E  V  R  *  H  Q  V  W  Y  L  L  L  *  L  S  F  F  K  R  S  Q  T  N  R  P  L  E  M  V  Q  R  Y  N  I  *  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65387" stop="66799"/>
                    <exon start="66910" stop="67074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYFLRCLELVHIHSTCNFSSKMQIISKSSGSREVRNENLHTNGNLATECPQTVGIESSYVPDSSAEWILGAITGSKSMLNILKSPLLNQFGSVNCTVDSGKENINDSEEGSFSDFMSSPGGFSVSSAQKLQKEMTDHGSEHVHRRVLSVSSTASTCSDQSCLSAAAPISQGMFQRRWKNGLPHYVFSIDGKKEVYVADLLEIDSPDDKFLDYVYTFHSRQESKKECAFSARESQLVGKMTVSTSVTLSPTKLEIMETRFVVFGSMDQYMDEIQTSHILRKNKKLAKKVTDVFRTSQSYKQRSLSKFGGTSAILEDASWTPSIDMYDDYYSCGNALLDQQIPPNFELAAVVTRDPLNDSSKEAEKGGWGMKFLKKSPTGSKNAPPEISVECRSRGTSDCSTSTDVIIPSGFHGGPRSRHAGPSSLLERWSSGGHCDCGGWDLGCPLTVLKTGNEASSQTTSGDCQTFDLYIQGLKQSAPVMKMSNIHDGLYYIHFHSTLSALQSFAIAAAFIHRHSPFLRPKLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80867" PGL_stop="83434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80867" e_stop="80907"/>
            <exon e_start="80999" e_stop="81283"/>
            <exon e_start="83003" e_stop="83044"/>
            <exon e_start="83211" e_stop="83434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80867" e_stop="80907" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80908" i_stop="80998" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80999" e_stop="81283" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81284" i_stop="83002" i_length="1719"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83003" e_stop="83044" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="83045" i_stop="83210" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83211" e_stop="83434" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80867" stop="80907"/>
              <exon start="80999" stop="81283"/>
              <exon start="83003" stop="83044"/>
              <exon start="83211" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG : GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG : ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG : GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</gDNA_template>
            <first_frame> *  C  T  V  L  S  G  S  K  N  V  E  A  R :   A  W  R  F  C  R  K  Q  I  P  D  V  T  G  F  T  G  G  G  D  G  E  L  C  *  *  H  W  S  E  E  P  L  H  H  F  S  K  G  Y  K  G  *  V  E  S  V  T  I  C  L  C  R  *  Y  G  N  G  Y  C  K  E  R  *  T  *  F  E  E  E  S  D  A  C  C  H  C  *  T  T  *  T  L  E  T  K  G  W  C  F  H  V  L  *  R :   *  C  W  S  D  C  E  S  Q  R  R  N  E  R :   F  C  Y  H  W  S  N  W  K  G  V  C  *  S  M  A  K  D  C  *  C  S  *  C  N  C  L  N  Y  *  E  L  V  N  L  Q  F  *  Y  L  L  F  G  V  L  L  L  S  Y  I  Q  T  N  A  A  M  L  Y  C  S  K  I  Y  K  F  I  *  Y  P  L  I  L  L  L  </first_frame>
            <second_frame>  N  V  P  Y  F  Q  D  P  K  M  S  K  R   : G  R  G  G  S  A  G  N  K  F  R  M  S  L  G  L  P  V  A  A  T  V  N  C  A  D  N  T  G  A  K  N  L  Y  I  I  S  V  K  G  I  K  G  R  L  N  R  L  P  S  A  C  V  G  D  M  V  M  A  T  V  K  K  G  K  P  D  L  R  K  K  V  M  P  A  V  I  V  R  Q  R  K  P  W  R  R  K  D  G  V  F  M  Y  F  E   : D  N  A  G  V  I  V  N  P  K  G  E  M  K   : G  S  A  I  T  G  P  I  G  K  E  C  A  D  L  W  P  R  I  A  S  A  A  N  A  I  V  *  T  T  K  S  *  L  T  C  S  F  D  T  F  Y  L  E  C  C  Y  C  H  I  Y  K  Q  M  Q  Q  C  C  I  A  L  R  F  I  S  S  Y  N  T  H  L  F  C  Y  * </second_frame>
            <third_frame>   M  Y  R  T  F  R  I  Q  K  C  R  S  E  :  G  V  E  V  L  P  E  T  N  S  G  C  H  W  V  Y  R  W  R  R  R  *  T  V  L  I  T  L  E  R  R  T  F  T  S  F  Q  *  R  V  *  R  V  G  *  I  G  Y  H  L  L  V  *  V  I  W  *  W  L  L  *  R  K  V  N  L  I  *  G  R  K  *  C  L  L  S  L  L  D  N  V  N  L  G  D  E  R  M  V  F  S  C  T  L  K  :  I  M  L  E  *  L  *  I  P  K  E  K  *  K  :  V  L  L  S  L  V  Q  L  E  R  S  V  L  I  Y  G  Q  G  L  L  V  Q  L  M  Q  L  S  E  L  L  R  V  S  *  P  A  V  L  I  P  F  I  W  S  A  V  I  V  I  Y  T  N  K  C  S  N  V  V  L  L  *  D  L  *  V  H  I  I  P  T  Y  F  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80868" stop="80907"/>
                    <exon start="80999" stop="81283"/>
                    <exon start="83003" stop="83044"/>
                    <exon start="83211" stop="83293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPYFQDPKMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85723" PGL_stop="87176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85723" e_stop="86119"/>
            <exon e_start="86738" e_stop="86947"/>
            <exon e_start="87027" e_stop="87176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85723" e_stop="86119" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86120" i_stop="86737" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86738" e_stop="86947" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86948" i_stop="87026" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="87027" e_stop="87176" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85723" stop="86119"/>
              <exon start="86738" stop="86947"/>
              <exon start="87027" stop="87176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG : GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG : AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGTAGCATTAATGGTCTTCCAAGTGCAAAAAGATCATTCAAACT</gDNA_template>
            <first_frame> K  S  Q  K  K  W  Q  E  N  L  E  F  S  L  Q  F  F  V  F  F  Q  L  H  V  L  E  I  G  T  F  C  H  N  T  K  P  I  V  V  S  K  L  A  *  K  I  I  V  R  V  G  E  *  M  L  S  Y  T  T  L  E  I  M  L  L  F  L  K  N  V  L  H  I  L  E  N  I  *  L  L  L  N  I  K  L  I  L  K  E  L  L  M  N  V  Y  F  I  L  V  L  I  V  F  W  K  M  M  E  K  M  L  G  F  L  I  L  M  I  L  F  F  P  Q  F  L  T  T  R  K  M  V  L   : G  E  I  S  *  M  *  H  L  W  R  I  G  *  A  K  G  K  E  Q  H  W  N  I  L  *  S  C  S  I  I  L  K  N  *  E  F  K  S  F  L  F  L  R  E  E  N  I  L  D  P  P  L  S  T  I  L  S  K  L  I  S  M  D  G  I  A  S  Y  *   : E  I  K  K  M  N  A  R  M  H  R  H  S  R  Q  R  *  E  V  N  L  *  V  K  V  I  E  L  L  A  L  L  E  T  N  G  V  A  L  M  V  F  Q  V  Q  K  D  H  S  N  </first_frame>
            <second_frame>  N  L  K  K  N  G  K  K  I  W  N  F  L  Y  N  F  L  Y  S  F  N  F  M  S  W  R  L  E  H  F  V  T  T  Q  N  Q  *  W  S  P  N  *  P  K  K  L  L  *  E  L  E  N  E  C  *  V  T  Q  H  *  R  L  C  C  C  S  S  R  M  C  C  I  Y  W  K  I  Y  D  F  Y  S  I  *  S  *  F  *  K  N  Y  *  *  M  Y  T  L  Y  *  Y  *  L  Y  F  G  K  *  W  K  R  C  L  D  F  *  Y  *  *  Y  S  S  F  L  S  S  L  L  Q  E  K  W  F  W  :  G  K  *  A  K  C  D  I  F  G  G  L  D  E  P  R  E  R  N  S  I  G  T  F  F  K  V  V  Q  S  S  *  R  T  R  S  S  N  L  S  C  F  F  E  K  R  T  S  *  I  R  H  C  R  Q  S  C  Q  S  *  F  L  W  M  E  *  P  H  T  K  :  R  S  R  R  *  M  Q  E  C  T  D  I  Q  G  R  D  K  K  *  T  Y  K  S  R  L  *  N  C  W  H  Y  W  R  P  M  E  *  H  *  W  S  S  K  C  K  K  I  I  Q  T </second_frame>
            <third_frame>   I  S  K  K  M  A  R  K  F  G  I  F  F  T  I  F  C  I  L  S  T  S  C  L  G  D  W  N  I  L  S  Q  H  K  T  N  S  G  L  Q  I  S  L  K  N  Y  C  E  S  W  R  M  N  V  E  L  H  N  I  R  D  Y  V  V  V  P  Q  E  C  V  A  Y  I  G  K  Y  M  T  S  T  Q  Y  K  V  D  F  E  R  T  I  N  E  C  I  L  Y  I  S  T  N  C  I  L  E  N  D  G  K  D  A  W  I  F  D  I  D  D  T  L  L  S  S  V  P  Y  Y  K  K  N  G  F  G :   G  N  K  L  N  V  T  S  L  E  D  W  M  S  Q  G  K  G  T  A  L  E  H  S  L  K  L  F  N  H  L  K  E  L  G  V  Q  I  F  L  V  S  S  R  R  E  H  L  R  S  A  T  V  D  N  L  V  K  V  D  F  Y  G  W  N  S  L  I  L  R :   D  Q  E  D  E  C  K  N  A  Q  T  F  K  A  E  I  R  S  K  L  I  S  Q  G  Y  R  I  V  G  I  I  G  D  Q  W  S  S  I  N  G  L  P  S  A  K  R  S  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85725" stop="86119"/>
                    <exon start="86738" stop="86947"/>
                    <exon start="87027" stop="87174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKKMARKFGIFFTIFCILSTSCLGDWNILSQHKTNSGLQISLKNYCESWRMNVELHNIRDYVVVPQECVAYIGKYMTSTQYKVDFERTINECILYISTNCILENDGKDAWIFDIDDTLLSSVPYYKKNGFGGNKLNVTSLEDWMSQGKGTALEHSLKLFNHLKELGVQIFLVSSRREHLRSATVDNLVKVDFYGWNSLILRDQEDECKNAQTFKAEIRSKLISQGYRIVGIIGDQWSSINGLPSAKRSFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90664" PGL_stop="94034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90664" e_stop="90925"/>
            <exon e_start="91579" e_stop="91747"/>
            <exon e_start="91880" e_stop="92005"/>
            <exon e_start="93578" e_stop="93640"/>
            <exon e_start="93747" e_stop="94034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90664" e_stop="90925" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.945">
            <gDNA_intron_boundary i_start="90926" i_stop="91578" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91579" e_stop="91747" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91748" i_stop="91879" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91880" e_stop="92005" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92006" i_stop="93577" i_length="1572"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93578" e_stop="93640" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93641" i_stop="93746" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93747" e_stop="94034" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90664" stop="90925"/>
              <exon start="91579" stop="91747"/>
              <exon start="91880" stop="92005"/>
              <exon start="93578" stop="93640"/>
              <exon start="93747" stop="94034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG : TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA : CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG : ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT : GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</gDNA_template>
            <first_frame> N  S  F  T  P  L  R  R  E  K  A  I  Q  K  E  R  I  L  T  G  K  Q  W  P  P  K  H  R  *  R  R  R  R  F  R  R  *  R  Q  R  R  L  W  R  S  S  R  I  S  *  R  G  S  G  R  S  G  S  I  T  S  L  N  R  N  K  A  S  L  G  E  V  L  F  E  K  L  I  L  L  K  L  L  R  N  S  G   : V  Y  M  I  K  Y  S  S  P  A  R  L  L  L  M  R  T  F  I  C  S  K  L  G  L  S  P  N  G  K  I  L  S  V  P  M  V  A  S  G  L  L  L  A  A  E  R  L  I  S  R  L  C  G  *  K  H :   *  W  H  W  S  A  S  N  L  M  S  Q  K  I  Y  V  G  W  L  L  V  C  V  G  V  R  I  N  F  P  C  G  L  R  Q  P  P  M  K  Q  L  R :   W  A  L  V  G  S  G  R  R  S  L  M  P  K  R  Y  P  I  V  S  M :   M  I  L  K  E  R  G  Q  L  R  A  D  I  L  C  E  I  S  L  S  C  G  I  N  T  T  P  *  A  L  Y  Q  Y  *  N  C  T  I  S  T  F  L  R  L  S  A  A  N  F  D  L  I  E  I  Y  S  N  L  M  Y  V  W  M  Y  C  I  K  D  F  V  L  M  F  V  I  Y  V  V  S  L  Y  I  S  S  R  L  Y  G  R  K  L  S  R  F  I   </first_frame>
            <second_frame>  I  P  L  R  L  S  V  V  K  K  L  Y  K  R  R  G  F  *  R  E  N  N  G  H  R  S  T  G  R  G  D  G  D  S  V  G  S  G  S  G  D  C  G  E  A  A  A  *  A  R  E  E  V  D  V  L  V  R  *  P  V  *  T  E  T  R  R  R  L  G  K  F  S  S  K  S  L  Y  F  *  N  C  *  G  I  L  E  :  F  I  *  S  N  I  Q  A  Q  Q  G  Y  C  *  C  G  L  S  F  V  Q  S  W  D  *  A  Q  M  G  R  S  *  V  C  Q  W  W  Q  V  D  C  Y  *  Q  Q  K  G  *  S  R  D  Y  V  A  R  N   : T  D  G  I  G  R  R  A  I  *  *  V  R  R  Y  M  W  G  G  C  *  C  A  *  E  S  G  *  T  F  L  V  D  *  D  S  H  Q  *  S  S  S   : D  G  H  W  *  E  V  E  G  D  H  *  C  R  K  D  I  L  *  F  P   : *  *  F  *  K  R  E  V  S  *  E  P  I  Y  C  V  K  F  L  Y  R  V  E  L  T  P  L  L  K  L  F  T  N  T  E  I  V  R  L  A  L  F  C  A  C  L  L  Q  I  L  I  L  L  K  F  I  R  T  *  C  M  F  G  C  I  A  L  K  I  L  F  *  C  L  L  F  M  W  Y  H  F  I  S  Q  V  D  S  M  G  E  S  L  V  D  S  L  </second_frame>
            <third_frame>   F  L  Y  A  S  P  S  *  K  S  Y  T  K  G  E  D  F  D  G  K  T  M  A  T  E  A  P  V  E  A  T  E  I  P  S  V  A  A  A  E  T  V  E  K  Q  P  H  K  L  E  R  K  W  T  F  W  F  D  N  Q  S  K  P  K  Q  G  V  A  W  G  S  S  L  R  K  A  Y  T  F  E  T  V  E  E  F  W  S :   L  Y  D  Q  I  F  K  P  S  K  V  T  V  N  A  D  F  H  L  F  K  A  G  I  E  P  K  W  E  D  P  E  C  A  N  G  G  K  W  T  A  T  S  S  R  K  A  N  L  E  T  M  W  L  E  T  :  L  M  A  L  V  G  E  Q  F  D  E  S  E  D  I  C  G  V  V  A  S  V  R  R  S  Q  D  K  L  S  L  W  T  K  T  A  T  N  E  A  A  Q  :  M  G  I  G  R  K  W  K  E  I  I  D  A  E  K  I  S  Y  S  F  H  :  D  D  S  K  R  E  R  S  A  K  S  R  Y  T  V  *  N  F  F  I  V  W  N  *  H  H  S  L  S  S  L  P  I  L  K  L  Y  D  *  H  F  F  A  L  V  C  C  K  F  *  S  Y  *  N  L  F  E  L  D  V  C  L  D  V  L  H  *  R  F  C  S  D  V  C  Y  L  C  G  I  T  L  Y  L  K  *  T  L  W  E  K  A  *  S  I  H  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90690" stop="90925"/>
                    <exon start="91579" stop="91747"/>
                    <exon start="91880" stop="92005"/>
                    <exon start="93578" stop="93640"/>
                    <exon start="93747" stop="93794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTKGEDFDGKTMATEAPVEATEIPSVAAAETVEKQPHKLERKWTFWFDNQSKPKQGVAWGSSLRKAYTFETVEEFWSLYDQIFKPSKVTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLETMWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIIDAEKISYSFHDDSKRERSAKSRYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96172" PGL_stop="94428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96172" e_stop="95849"/>
            <exon e_start="94679" e_stop="94428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.694" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96172" e_stop="95849" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.694">
            <gDNA_intron_boundary i_start="95848" i_stop="94680" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94679" e_stop="94428" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96172" stop="95849"/>
              <exon start="94679" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTATCATCACTTTTATATTCAAGAATATTATTTACTACTAGTAGTCCTAAGAAAAAAGGTTATTTGAATGGCAATTACAAGTTCAATTGCAACAACTTCATTTTCTTCATGTGTTAGTGGTGAAGATTATGGTAAGTTTATGAGGAAAGTGCAACCATTAATGAATGTTAAATTTGGAAAGGCAGTGAGATCAAGGATAATGATGGGTAATGTTAATGATGGAAAAGGATTATTTGCACCAATTGTTGTTATCACTAGGAATATTGTTGGCAAAAAAAGATTCAATCAACTTAGGGGCAAAGCTATTGCTTTACACTCTCAG : GTAATCACAGAGTTTTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</gDNA_template>
            <first_frame> H  Y  H  H  F  Y  I  Q  E  Y  Y  L  L  L  V  V  L  R  K  K  V  I  *  M  A  I  T  S  S  I  A  T  T  S  F  S  S  C  V  S  G  E  D  Y  G  K  F  M  R  K  V  Q  P  L  M  N  V  K  F  G  K  A  V  R  S  R  I  M  M  G  N  V  N  D  G  K  G  L  F  A  P  I  V  V  I  T  R  N  I  V  G  K  K  R  F  N  Q  L  R  G  K  A  I  A  L  H  S  Q  :  V  I  T  E  F  C  K  S  I  G  A  D  Q  K  Q  R  Q  G  L  I  R  L  A  K  K  N  G  E  K  L  G  F  L  A  *  W  M  A  Q  N  *  S  L  L  P  M  C  Y  D  Q  I  A  I  A  S  F  V  *  L  R  Q  I  N  Q  I  Q  L  *  F  Y  V  L  F  K  H  I  Y  M  C  F  V  V  *  K </first_frame>
            <second_frame>  I  I  I  T  F  I  F  K  N  I  I  Y  Y  *  *  S  *  E  K  R  L  F  E  W  Q  L  Q  V  Q  L  Q  Q  L  H  F  L  H  V  L  V  V  K  I  M  V  S  L  *  G  K  C  N  H  *  *  M  L  N  L  E  R  Q  *  D  Q  G  *  *  W  V  M  L  M  M  E  K  D  Y  L  H  Q  L  L  L  S  L  G  I  L  L  A  K  K  D  S  I  N  L  G  A  K  L  L  L  Y  T  L  R :   *  S  Q  S  F  A  S  Q  *  E  Q  I  R  S  K  G  K  D  *  F  D  W  Q  R  R  M  V  K  N  L  D  F  L  L  D  G  W  H  K  I  N  H  Y  C  Q  C  V  M  I  K  *  L  *  P  L  L  C  N  *  D  K  S  I  R  Y  N  F  N  F  M  Y  Y  S  N  I  Y  I  C  A  L  *  S  R   </second_frame>
            <third_frame>   L  S  S  L  L  Y  S  R  I  L  F  T  T  S  S  P  K  K  K  G  Y  L  N  G  N  Y  K  F  N  C  N  N  F  I  F  F  M  C  *  W  *  R  L  W  *  V  Y  E  E  S  A  T  I  N  E  C  *  I  W  K  G  S  E  I  K  D  N  D  G  *  C  *  *  W  K  R  I  I  C  T  N  C  C  Y  H  *  E  Y  C  W  Q  K  K  I  Q  S  T  *  G  Q  S  Y  C  F  T  L  S   : G  N  H  R  V  L  Q  V  N  R  S  R  S  E  A  K  A  R  I  N  S  I  G  K  E  E  W  *  K  T  W  I  S  C  L  M  D  G  T  K  L  I  I  I  A  N  V  L  *  S  N  S  Y  S  L  F  C  V  I  E  T  N  Q  S  D  T  T  L  I  L  C  I  I  Q  T  Y  I  Y  V  L  C  S  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96103" stop="95849"/>
                    <exon start="94679" stop="94575"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAITSSIATTSFSSCVSGEDYGKFMRKVQPLMNVKFGKAVRSRIMMGNVNDGKGLFAPIVVITRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADQKQRQGLIRLAKKNGEKLGFLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="110177" PGL_stop="110869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110177" e_stop="110869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="110177" e_stop="110869" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110177" stop="110869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGGTGGCCAAAGAAAGAACTCTTCGAATCAATCAAGCTCCTTACTTGTCTTTAAAGTATCTTTGTACTAAATTAGAAGAAAAAAATAGGTATTTTTATTTTTGGACCAAGGACTGCTGTCAATTACAAAAGAAGCTAGGCCATCTCTGTTCTAGAGGTAGAGAGCCTATGAAATATAAAACTTAATTTACATTATCTGCAAATGAAAATTATACCAAACGAACAAAGACAGAAAGTCTTGATGCTATAAGGATGATTAGATTTTCCTCTTGAAGAGTTCATACAATGCAAACAGGGAACAACAATGAGTGAACCATGTTTTTTTGCATTCCTATAGCGGTTTTTTCTAGACCAGTGCTTCAGAAAGCTGCTGTTGGGGACTTTGGGTTCTTATTATCATCACTGTTGCCTGAATTATTTTAAAGCATATACGTTGCATTGTACAATCTACAATGCAAAGACAAGTGATTTGAGTCTTAAGTATCCAGATCACAGAAGTAGTATCTCTTACATGAATATAATCCCATAAACCCCTTAGTATTTGTTATGCAAATATAATCCCCTGAACTCCTTAGTAATTTTTACGCAAAAATAATCCCCTTCTCCTTATATTTTCTTGTGTTAGACAAACTTCAGGCATATGGCATAACCATTGGTTCCATCAGAAATCAGAATCTGATCTCATTCAGT</gDNA_template>
            <first_frame> M  L  V  A  K  E  R  T  L  R  I  N  Q  A  P  Y  L  S  L  K  Y  L  C  T  K  L  E  E  K  N  R  Y  F  Y  F  W  T  K  D  C  C  Q  L  Q  K  K  L  G  H  L  C  S  R  G  R  E  P  M  K  Y  K  T  *  F  T  L  S  A  N  E  N  Y  T  K  R  T  K  T  E  S  L  D  A  I  R  M  I  R  F  S  S  *  R  V  H  T  M  Q  T  G  N  N  N  E  *  T  M  F  F  C  I  P  I  A  V  F  S  R  P  V  L  Q  K  A  A  V  G  D  F  G  F  L  L  S  S  L  L  P  E  L  F  *  S  I  Y  V  A  L  Y  N  L  Q  C  K  D  K  *  F  E  S  *  V  S  R  S  Q  K  *  Y  L  L  H  E  Y  N  P  I  N  P  L  V  F  V  M  Q  I  *  S  P  E  L  L  S  N  F  Y  A  K  I  I  P  F  S  L  Y  F  L  V  L  D  K  L  Q  A  Y  G  I  T  I  G  S  I  R  N  Q  N  L  I  S  F  S </first_frame>
            <second_frame>  C  W  W  P  K  K  E  L  F  E  S  I  K  L  L  T  C  L  *  S  I  F  V  L  N  *  K  K  K  I  G  I  F  I  F  G  P  R  T  A  V  N  Y  K  R  S  *  A  I  S  V  L  E  V  E  S  L  *  N  I  K  L  N  L  H  Y  L  Q  M  K  I  I  P  N  E  Q  R  Q  K  V  L  M  L  *  G  *  L  D  F  P  L  E  E  F  I  Q  C  K  Q  G  T  T  M  S  E  P  C  F  F  A  F  L  *  R  F  F  L  D  Q  C  F  R  K  L  L  L  G  T  L  G  S  Y  Y  H  H  C  C  L  N  Y  F  K  A  Y  T  L  H  C  T  I  Y  N  A  K  T  S  D  L  S  L  K  Y  P  D  H  R  S  S  I  S  Y  M  N  I  I  P  *  T  P  *  Y  L  L  C  K  Y  N  P  L  N  S  L  V  I  F  T  Q  K  *  S  P  S  P  Y  I  F  L  C  *  T  N  F  R  H  M  A  *  P  L  V  P  S  E  I  R  I  *  S  H  S   </second_frame>
            <third_frame>   V  G  G  Q  R  K  N  S  S  N  Q  S  S  S  L  L  V  F  K  V  S  L  Y  *  I  R  R  K  K  *  V  F  L  F  L  D  Q  G  L  L  S  I  T  K  E  A  R  P  S  L  F  *  R  *  R  A  Y  E  I  *  N  L  I  Y  I  I  C  K  *  K  L  Y  Q  T  N  K  D  R  K  S  *  C  Y  K  D  D  *  I  F  L  L  K  S  S  Y  N  A  N  R  E  Q  Q  *  V  N  H  V  F  L  H  S  Y  S  G  F  F  *  T  S  A  S  E  S  C  C  W  G  L  W  V  L  I  I  I  T  V  A  *  I  I  L  K  H  I  R  C  I  V  Q  S  T  M  Q  R  Q  V  I  *  V  L  S  I  Q  I  T  E  V  V  S  L  T  *  I  *  S  H  K  P  L  S  I  C  Y  A  N  I  I  P  *  T  P  *  *  F  L  R  K  N  N  P  L  L  L  I  F  S  C  V  R  Q  T  S  G  I  W  H  N  H  W  F  H  Q  K  S  E  S  D  L  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0008K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="122413" PGL_stop="125964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122413" e_stop="123115"/>
            <exon e_start="125547" e_stop="125964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="122413" e_stop="123115" e_length="703"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123116" i_stop="125546" i_length="2431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125547" e_stop="125964" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122413" stop="123115"/>
              <exon start="125547" stop="125964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTCAAATCTAATCATACAAATTCAAGGGTTTTTGATTCATTGTTATACCAATTCTTCTACTTTTTCCATTTTCCTTCACATTCAGAGAAGGAAAATTAACAAAAAAGCCAATTCTTGAAAGCTAAACCAATACAAAGATTAGCTTTTTAGCTTTTTTTGATACATACCCATATAGTTTTATGAGGATTTGAAGATCAAGAATCTACAAATTCCTTGTTTTGATATCATTTGGGAGGTGGGTTTTTGTGGGTTATGAAGATAATGCATTAAATCTTGAAATTTTCTTGTAAAGATTTGAGCTTTTTGAGGTTTTTTGTTGAAATGGGGTTGTTGGTTTTGCATTGGAATCATATGATTTTGAGGTTGTTTAGGTAAAGGAATTTAGAAGGAAGATTTGTTTTTTGTTGTTGTTGTTGTGTGTTTGGAGGAATGGATACTAAAAGTAATAAAGATTTAAAAGGGGAGAAAATTCAGTATGTTGATAGTGTGGAAGCTCTTCCTAATTCTGTGTTGAATGGTGGAAAAGATGAAGATGATGAGTCTAAAGCATTGTTGCCTTCTAGGAAAGGTGGATTGTCAAAAAAGATAGCTAAGCCAAAGAGGAAAGTTCAGTGGAATGATACAAATGGGAATAAACTTACTGAGGTTTTGGAATTTGAGCCAAG : TGATGCAAGTGACTCGGATGAAGATGATTCAGATTCTTGCATTTGTAGGATAATGTAGTTCTTATTAAATGCATTACCAAACCAATTGTGAGTCAAGAATGTTGAATCTCCTTCGATTCACATCTTTATAGCATACAATAACAGCAGTTTTTAAGAGAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAATCAGATAGAGAGAATAACTTCCTCTATTGTATAATGTATATGAGTGCTTCGAGTTATAGTAGATAACATACAGAACCCTTCAGGTTTTCTTGTTTTCTTTTGCTTAATTATAATGTATATGAGTGCTGAGCCTTACAGATGATGACTTTGTTCTAGCAAGAATGATTTTATAACATCTTTAATTCTTTGTCC</gDNA_template>
            <first_frame> I  L  Y  F  F  F  I  F  F  F  F  F  F  S  N  L  I  I  Q  I  Q  G  F  L  I  H  C  Y  T  N  S  S  T  F  S  I  F  L  H  I  Q  R  R  K  I  N  K  K  A  N  S  *  K  L  N  Q  Y  K  D  *  L  F  S  F  F  *  Y  I  P  I  *  F  Y  E  D  L  K  I  K  N  L  Q  I  P  C  F  D  I  I  W  E  V  G  F  C  G  L  *  R  *  C  I  K  S  *  N  F  L  V  K  I  *  A  F  *  G  F  L  L  K  W  G  C  W  F  C  I  G  I  I  *  F  *  G  C  L  G  K  G  I  *  K  E  D  L  F  F  V  V  V  V  V  C  L  E  E  W  I  L  K  V  I  K  I  *  K  G  R  K  F  S  M  L  I  V  W  K  L  F  L  I  L  C  *  M  V  E  K  M  K  M  M  S  L  K  H  C  C  L  L  G  K  V  D  C  Q  K  R  *  L  S  Q  R  G  K  F  S  G  M  I  Q  M  G  I  N  L  L  R  F  W  N  L  S  Q   : V  M  Q  V  T  R  M  K  M  I  Q  I  L  A  F  V  G  *  C  S  S  Y  *  M  H  Y  Q  T  N  C  E  S  R  M  L  N  L  L  R  F  T  S  L  *  H  T  I  T  A  V  F  K  R  V  D  C  L  *  F  G  S  S  Y  L  S  Q  M  K  R  P  F  L  V  E  H  N  Q  I  E  R  I  T  S  S  I  V  *  C  I  *  V  L  R  V  I  V  D  N  I  Q  N  P  S  G  F  L  V  F  F  C  L  I  I  M  Y  M  S  A  E  P  Y  R  *  *  L  C  S  S  K  N  D  F  I  T  S  L  I  L  C   </first_frame>
            <second_frame>  F  C  I  F  F  L  F  F  F  F  F  F  F  Q  I  *  S  Y  K  F  K  G  F  *  F  I  V  I  P  I  L  L  L  F  P  F  S  F  T  F  R  E  G  K  L  T  K  K  P  I  L  E  S  *  T  N  T  K  I  S  F  L  A  F  F  D  T  Y  P  Y  S  F  M  R  I  *  R  S  R  I  Y  K  F  L  V  L  I  S  F  G  R  W  V  F  V  G  Y  E  D  N  A  L  N  L  E  I  F  L  *  R  F  E  L  F  E  V  F  C  *  N  G  V  V  G  F  A  L  E  S  Y  D  F  E  V  V  *  V  K  E  F  R  R  K  I  C  F  L  L  L  L  L  C  V  W  R  N  G  Y  *  K  *  *  R  F  K  R  G  E  N  S  V  C  *  *  C  G  S  S  S  *  F  C  V  E  W  W  K  R  *  R  *  *  V  *  S  I  V  A  F  *  E  R  W  I  V  K  K  D  S  *  A  K  E  E  S  S  V  E  *  Y  K  W  E  *  T  Y  *  G  F  G  I  *  A  K  :  *  C  K  *  L  G  *  R  *  F  R  F  L  H  L  *  D  N  V  V  L  I  K  C  I  T  K  P  I  V  S  Q  E  C  *  I  S  F  D  S  H  L  Y  S  I  Q  *  Q  Q  F  L  R  E  S  T  V  S  N  L  V  Q  V  I  *  A  K  *  N  D  P  F  S  L  N  T  I  R  *  R  E  *  L  P  L  L  Y  N  V  Y  E  C  F  E  L  *  *  I  T  Y  R  T  L  Q  V  F  L  F  S  F  A  *  L  *  C  I  *  V  L  S  L  T  D  D  D  F  V  L  A  R  M  I  L  *  H  L  *  F  F  V  </second_frame>
            <third_frame>   F  V  F  F  F  Y  F  F  F  F  F  F  F  K  S  N  H  T  N  S  R  V  F  D  S  L  L  Y  Q  F  F  Y  F  F  H  F  P  S  H  S  E  K  E  N  *  Q  K  S  Q  F  L  K  A  K  P  I  Q  R  L  A  F  *  L  F  L  I  H  T  H  I  V  L  *  G  F  E  D  Q  E  S  T  N  S  L  F  *  Y  H  L  G  G  G  F  L  W  V  M  K  I  M  H  *  I  L  K  F  S  C  K  D  L  S  F  L  R  F  F  V  E  M  G  L  L  V  L  H  W  N  H  M  I  L  R  L  F  R  *  R  N  L  E  G  R  F  V  F  C  C  C  C  C  V  F  G  G  M  D  T  K  S  N  K  D  L  K  G  E  K  I  Q  Y  V  D  S  V  E  A  L  P  N  S  V  L  N  G  G  K  D  E  D  D  E  S  K  A  L  L  P  S  R  K  G  G  L  S  K  K  I  A  K  P  K  R  K  V  Q  W  N  D  T  N  G  N  K  L  T  E  V  L  E  F  E  P  S :   D  A  S  D  S  D  E  D  D  S  D  S  C  I  C  R  I  M  *  F  L  L  N  A  L  P  N  Q  L  *  V  K  N  V  E  S  P  S  I  H  I  F  I  A  Y  N  N  S  S  F  *  E  S  R  L  S  L  I  W  F  K  L  S  E  P  N  E  T  T  L  S  R  *  T  Q  S  D  R  E  N  N  F  L  Y  C  I  M  Y  M  S  A  S  S  Y  S  R  *  H  T  E  P  F  R  F  S  C  F  L  L  L  N  Y  N  V  Y  E  C  *  A  L  Q  M  M  T  L  F  *  Q  E  *  F  Y  N  I  F  N  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122826" stop="123115"/>
                    <exon start="125547" stop="125604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLEGRFVFCCCCCVFGGMDTKSNKDLKGEKIQYVDSVEALPNSVLNGGKDEDDESKALLPSRKGGLSKKIAKPKRKVQWNDTNGNKLTEVLEFEPSDASDSDEDDSDSCICRIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="128172" PGL_stop="125923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128172" e_stop="127999"/>
            <exon e_start="127458" e_stop="127388"/>
            <exon e_start="126924" e_stop="125923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128172" e_stop="127999" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.996">
            <gDNA_intron_boundary i_start="127998" i_stop="127459" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127458" e_stop="127388" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="127387" i_stop="126925" i_length="463"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="126924" e_stop="125923" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128172" stop="127999"/>
              <exon start="127458" stop="127388"/>
              <exon start="126924" stop="126587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126619" stop="125923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAAATTCCTTCTCCATTCTTCTCTGTCGATTTTTTCTTTTTTGGGGGAAAATCAAGAAAACAGAGATCTTGAAAACAAAAACAAAAACAAAAACAAATGGGATGTTTTCTTGGATGTTTTGGTTTTACAAACAAGAAACAAAAGCGTATAAAGCCTTGTAACAAGTTTCAA : GTGCATCAAAAGTATGTACCACTGGATTCTGAGAAGGAAATTGTTGTAAATTCAGCAAATTCTGAGCCCAG : GGATAAGCCAAAAGAATCATCAAAACGTAAGGTGAAAAAGAAAGTGAGTTTCAATTTGGATGTGAAGACTTACGAGAGAATACAAGATGATGAAAACAACACAACATATTTCTCAGAGGAAGAGGAGAAGACAAATAAACAAGAAACAGCCAAAGCAAGTATGTCTATGTACCCTTCGAGTCATCGATACTATAACTGCAACAATAGCTACGATGAGGAGGAAGACGAGATAATACTTGAGGACAGTGATATCGATGATCTAGATGACGATGAAGAAGAAGAAGACTATGGTGTTAGTGATGACGATGATGATGATGATGTTGGTGGTGATGAATCTGCAGATTCTTTGCATATTGAAGCAGAAAACAAGTATGGAAATGTTGAAAAACTGAACACAGATGAATCGAATGTAGTAAGTCGAAATCATAGGAGTTCTGTGCTTCTTCCAGTTGAAAATCTCACTCAATGGAAAGCAGTTAAAGCAAGAGGAGCACAACAAGTGAAGCATCAGAAGGAAAACATAATCAAATTGGATGGAAAACCAGTAAACAGCCATTGTGTGGACCTAAATCCCAAATACAACTCTAAGCCTAAGTCTAAGCTTCAAGGACATGATATTTCAGTAGATGCCAGCCTCTCTAACTGGATGGTTTCAGCAAAAACAACATCAGTAAATGGATCAGCTGTGTATTACAATCAACATAGAGCTGCAGATGAAGTCGTGCTCGATGAAGTCAATATCATATAAACAGAGAAGGTGCAGTACCTAAATACATTTGGATTGATGTTTGTGTAAAGAATTGATTGTTTTTTTGCATGATTTATGTGTGCAGTGTGTTGTATTCTCTTCTCCGCGAGAGAAGAAAAGACAATAAGATTTTCATCTGGGGAACCTGTATTTGGTTGATAGCATATCATATGCATGTTGTAATTCTTTTACTGTTACAGAACAAAGCAAATGGACAAAGAATTAAAGATGTTATAAAATCATTCTTGCTAGAA</gDNA_template>
            <first_frame> S  K  I  P  S  P  F  F  S  V  D  F  F  F  F  G  G  K  S  R  K  Q  R  S  *  K  Q  K  Q  K  Q  K  Q  M  G  C  F  L  G  C  F  G  F  T  N  K  K  Q  K  R  I  K  P  C  N  K  F  Q  :  V  H  Q  K  Y  V  P  L  D  S  E  K  E  I  V  V  N  S  A  N  S  E  P  R :   D  K  P  K  E  S  S  K  R  K  V  K  K  K  V  S  F  N  L  D  V  K  T  Y  E  R  I  Q  D  D  E  N  N  T  T  Y  F  S  E  E  E  E  K  T  N  K  Q  E  T  A  K  A  S  M  S  M  Y  P  S  S  H  R  Y  Y  N  C  N  N  S  Y  D  E  E  E  D  E  I  I  L  E  D  S  D  I  D  D  L  D  D  D  E  E  E  E  D  Y  G  V  S  D  D  D  D  D  D  D  V  G  G  D  E  S  A  D  S  L  H  I  E  A  E  N  K  Y  G  N  V  E  K  L  N  T  D  E  S  N  V  V  S  R  N  H  R  S  S  V  L  L  P  V  E  N  L  T  Q  W  K  A  V  K  A  R  G  A  Q  Q  V  K  H  Q  K  E  N  I  I  K  L  D  G  K  P  V  N  S  H  C  V  D  L  N  P  K  Y  N  S  K  P  K  S  K  L  Q  G  H  D  I  S  V  D  A  S  L  S  N  W  M  V  S  A  K  T  T  S  V  N  G  S  A  V  Y  Y  N  Q  H  R  A  A  D  E  V  V  L  D  E  V  N  I  I  *  T  E  K  V  Q  Y  L  N  T  F  G  L  M  F  V  *  R  I  D  C  F  F  A  *  F  M  C  A  V  C  C  I  L  F  S  A  R  E  E  K  T  I  R  F  S  S  G  E  P  V  F  G  *  *  H  I  I  C  M  L  *  F  F  Y  C  Y  R  T  K  Q  M  D  K  E  L  K  M  L  *  N  H  S  C  *   </first_frame>
            <second_frame>  L  K  F  L  L  H  S  S  L  S  I  F  S  F  L  G  E  N  Q  E  N  R  D  L  E  N  K  N  K  N  K  N  K  W  D  V  F  L  D  V  L  V  L  Q  T  R  N  K  S  V  *  S  L  V  T  S  F  K :   C  I  K  S  M  Y  H  W  I  L  R  R  K  L  L  *  I  Q  Q  I  L  S  P   : G  I  S  Q  K  N  H  Q  N  V  R  *  K  R  K  *  V  S  I  W  M  *  R  L  T  R  E  Y  K  M  M  K  T  T  Q  H  I  S  Q  R  K  R  R  R  Q  I  N  K  K  Q  P  K  Q  V  C  L  C  T  L  R  V  I  D  T  I  T  A  T  I  A  T  M  R  R  K  T  R  *  Y  L  R  T  V  I  S  M  I  *  M  T  M  K  K  K  K  T  M  V  L  V  M  T  M  M  M  M  M  L  V  V  M  N  L  Q  I  L  C  I  L  K  Q  K  T  S  M  E  M  L  K  N  *  T  Q  M  N  R  M  *  *  V  E  I  I  G  V  L  C  F  F  Q  L  K  I  S  L  N  G  K  Q  L  K  Q  E  E  H  N  K  *  S  I  R  R  K  T  *  S  N  W  M  E  N  Q  *  T  A  I  V  W  T  *  I  P  N  T  T  L  S  L  S  L  S  F  K  D  M  I  F  Q  *  M  P  A  S  L  T  G  W  F  Q  Q  K  Q  H  Q  *  M  D  Q  L  C  I  T  I  N  I  E  L  Q  M  K  S  C  S  M  K  S  I  S  Y  K  Q  R  R  C  S  T  *  I  H  L  D  *  C  L  C  K  E  L  I  V  F  L  H  D  L  C  V  Q  C  V  V  F  S  S  P  R  E  K  K  R  Q  *  D  F  H  L  G  N  L  Y  L  V  D  S  I  S  Y  A  C  C  N  S  F  T  V  T  E  Q  S  K  W  T  K  N  *  R  C  Y  K  I  I  L  A  R  </second_frame>
            <third_frame>   *  N  S  F  S  I  L  L  C  R  F  F  L  F  W  G  K  I  K  K  T  E  I  L  K  T  K  T  K  T  K  T  N  G  M  F  S  W  M  F  W  F  Y  K  Q  E  T  K  A  Y  K  A  L  *  Q  V  S   : S  A  S  K  V  C  T  T  G  F  *  E  G  N  C  C  K  F  S  K  F  *  A  Q  :  G  *  A  K  R  I  I  K  T  *  G  E  K  E  S  E  F  Q  F  G  C  E  D  L  R  E  N  T  R  *  *  K  Q  H  N  I  F  L  R  G  R  G  E  D  K  *  T  R  N  S  Q  S  K  Y  V  Y  V  P  F  E  S  S  I  L  *  L  Q  Q  *  L  R  *  G  G  R  R  D  N  T  *  G  Q  *  Y  R  *  S  R  *  R  *  R  R  R  R  L  W  C  *  *  *  R  *  *  *  *  C  W  W  *  *  I  C  R  F  F  A  Y  *  S  R  K  Q  V  W  K  C  *  K  T  E  H  R  *  I  E  C  S  K  S  K  S  *  E  F  C  A  S  S  S  *  K  S  H  S  M  E  S  S  *  S  K  R  S  T  T  S  E  A  S  E  G  K  H  N  Q  I  G  W  K  T  S  K  Q  P  L  C  G  P  K  S  Q  I  Q  L  *  A  *  V  *  A  S  R  T  *  Y  F  S  R  C  Q  P  L  *  L  D  G  F  S  K  N  N  I  S  K  W  I  S  C  V  L  Q  S  T  *  S  C  R  *  S  R  A  R  *  S  Q  Y  H  I  N  R  E  G  A  V  P  K  Y  I  W  I  D  V  C  V  K  N  *  L  F  F  C  M  I  Y  V  C  S  V  L  Y  S  L  L  R  E  R  R  K  D  N  K  I  F  I  W  G  T  C  I  W  L  I  A  Y  H  M  H  V  V  I  L  L  L  L  Q  N  K  A  N  G  Q  R  I  K  D  V  I  K  S  F  L  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128097" stop="127999"/>
                    <exon start="127458" stop="127388"/>
                    <exon start="126924" stop="126177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKQKQKQMGCFLGCFGFTNKKQKRIKPCNKFQVHQKYVPLDSEKEIVVNSANSEPRDKPKESSKRKVKKKVSFNLDVKTYERIQDDENNTTYFSEEEEKTNKQETAKASMSMYPSSHRYYNCNNSYDEEEDEIILEDSDIDDLDDDEEEEDYGVSDDDDDDDVGGDESADSLHIEAENKYGNVEKLNTDESNVVSRNHRSSVLLPVENLTQWKAVKARGAQQVKHQKENIIKLDGKPVNSHCVDLNPKYNSKPKSKLQGHDISVDASLSNWMVSAKTTSVNGSAVYYNQHRAADEVVLDEVNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0008K04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126120" stop="125923"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFFCMIYVCSVLYSLLRERRKDNKIFIWGTCIWLIAYHMHVVILLLLQNKANGQRIKDVIKSFLLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 38888 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2046 bytes was the average size of a spliced alignment
$ 25968 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1527 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 09:13:58
-->
