<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 11:21:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319797" ref_strand="+" ref_description="SGN-U319797        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT4G09350.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to SP:Q45552 Chaperone protein dnaJ {Bacillus stearothermophilus}; contains Pfam profile PF00226: DnaJ domain | chr4:5931248-5932149 REVERSE | Aliases: T30A10.110, T30A10_110 (evalue: 5e-70, score=261) genbank/nr: gi|15233838|ref|NP_192673.1| DnaJ protein family [Arabidopsis thaliana] gi|7487553|pir||T17134 hypothetical protein T30A10.110 - Arabidopsis thaliana gi|5881780|emb|CAB55698.1| putative protein [Arabidopsis thaliana] gi|7267577|emb|CAB78058.1| putative protein [Arabidopsis thaliana](evalue: 4e-68, score=261)">
      <seq>accacacagaaagacaaggtgatgagaaagcccctccctctaagactactcaaatcagacacaaaacaaatttccaattccatggcgtcagcaacagctccaccagctccattcacctttcttacaaggaaccaaaccaataatgagcacagaacagataccagatggttgacaacaaaacaaagaagacgccgtgttggcttacaagtttatgcaaaagaagaaggggctactgggcgacaacgtgctcctcctggtgttgacacaagaattcactgggaaaacgaagatgaaggatgggtaggagagagtaagtcacggtccacacaagaacgaatcaaaacagacgaaaagaatctctttgatgaaaaattctcagacctcctcaacagttcagctaattctcactaccagttcttgggagtatctgcaacagctgatctagaggaaattaaagctgcatataggaggctatcaaaggagtatcatccagacacaactaatcttcctataagagcagcatcagagaaatttatgaaactaagagaaatttatgatgtcctgagtgatgaggaacaacggcgattctatgattggacactagctcaggagacagcaagtcgagaagcagagaaaatgaaaatgaggctgcaagatccacgcatgctggaagtagaaaactgggaatctgttccagacatggtggatcgacttggtggaaggaacatggagctgagtaatcaggcaaaaactgccctcacatttgatatcttgattatcatcttttcgttttgctgcattatatatgcagtagtcttcaaggaacaatattaacaggaacaactatgtgcattatacaacaacaatattctatactgtcaatacgcagttcatacactgcaatgacaatggattgggaaacagaacgactagagctttagtcataagtataactatagtttatttctattgagattacaaatttacactattgtcttttcatgagattattgacagcaaatgaagaaacaattctctcatacatcnnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="+" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="4634" stop="6365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4934" g_stop="5346" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5347" i_stop="5432" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5433" g_stop="6071" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="1052" r_length="639" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1053" polyA_stop="1074"/>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="+" ref_id="SGN-U319797" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1052</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4934" e_stop="5346"/>
          <exon e_start="5433" e_stop="6071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACAGAAAGACAAGGTGATGAGAAAGCCCCTCCCTCTAAGACTACTCAAATCAGACACAAAACAAATTTCCAATTCCATGGCGTCAGCAACAGCTCCACCAGCTCCATTCACCTTTCTTACAAGGAACCAAACCAATAATGAGCACAGAACAGATACCAGATGGTTGACAACAAAACAAAGAAGACGCCGTGTTGGCTTACAAGTTTATGCAAAAGAAGAAGGGGCTACTGGGCGACAACGTGCTCCTCCTGGTGTTGACACAAGAATTCACTGGGAAAACGAAGATGAAGGATGGGTAGGAGAGAGTAAGTCACGGTCCACACAAGAACGAATCAAAACAGACGAAAAGAATCTCTTTGATGAAAAATTCTCAGACCTCCTCAACAGTTCAGCTAATTCTCACTACCAGTTAGTCTTCATTATCTACTTTGCTATCTTCATCTTATCTCTTAATGTGTGGCTCACAGTTCATAATTCTAATGTTTCAAATTCAGGTTCTTGGGAGTATCTGCAACAGCTGATCTAGAGGAAATTAAAGCTGCATATAGGAGGCTATCAAAGGAGTATCATCCAGACACAACTAATCTTCCTATAAGAGCAGCATCAGAGAAATTTATGAAACTAAGAGAAATTTATGATGTCCTGAGTGATGAGGAACAACGACGATTCTATGATTGGACACTAGCTCAGGAGACAGCAAGTCGAGAAGCAGAGAAAATGAAAATGAGGCTGCAAGATCCACGCATGCTGGAAGTAGAAAACTGGGAATCTGTTCCAGACATGGTGGATCGACTTGGTGGAAGGAACATGGAGCTGAGTAATCAGGCAAAAACTGCCCTCACATTTGATATCTTGATTATCATCTTTTCGTTTTGCTGCATTATATATGCAGTAGTCTTCAAGGAACAATATTAACAGGAACAACTATGTGCATTATACAACAACAATATTCTATACTGTCAATACGCAGTTCATACACTGCAATGACAATGGATTGGGAAACAGAACGACTAGAGCTTTAGTCATAAGTATAACTATAGTTTATTTCTATTGAGCTTACAAATTTACACTATTGTCTTTTCATGAGATTATTGACAGCAAATGAAGAAACAATTCTCTCATACATCAATAAA</genome_strand>
        <mrna_strand>ACCACACAGAAAGACAAGGTGATGAGAAAGCCCCTCCCTCTAAGACTACTCAAATCAGACACAAAACAAATTTCCAATTCCATGGCGTCAGCAACAGCTCCACCAGCTCCATTCACCTTTCTTACAAGGAACCAAACCAATAATGAGCACAGAACAGATACCAGATGGTTGACAACAAAACAAAGAAGACGCCGTGTTGGCTTACAAGTTTATGCAAAAGAAGAAGGGGCTACTGGGCGACAACGTGCTCCTCCTGGTGTTGACACAAGAATTCACTGGGAAAACGAAGATGAAGGATGGGTAGGAGAGAGTAAGTCACGGTCCACACAAGAACGAATCAAAACAGACGAAAAGAATCTCTTTGATGAAAAATTCTCAGACCTCCTCAACAGTTCAGCTAATTCTCACTACCA......................................................................................GTTCTTGGGAGTATCTGCAACAGCTGATCTAGAGGAAATTAAAGCTGCATATAGGAGGCTATCAAAGGAGTATCATCCAGACACAACTAATCTTCCTATAAGAGCAGCATCAGAGAAATTTATGAAACTAAGAGAAATTTATGATGTCCTGAGTGATGAGGAACAACGGCGATTCTATGATTGGACACTAGCTCAGGAGACAGCAAGTCGAGAAGCAGAGAAAATGAAAATGAGGCTGCAAGATCCACGCATGCTGGAAGTAGAAAACTGGGAATCTGTTCCAGACATGGTGGATCGACTTGGTGGAAGGAACATGGAGCTGAGTAATCAGGCAAAAACTGCCCTCACATTTGATATCTTGATTATCATCTTTTCGTTTTGCTGCATTATATATGCAGTAGTCTTCAAGGAACAATATTAACAGGAACAACTATGTGCATTATACAACAACAATATTCTATACTGTCAATACGCAGTTCATACACTGCAATGACAATGGATTGGGAAACAGAACGACTAGAGCTTTAGTCATAAGTATAACTATAGTTTATTTCTATTGAGATTACAAATTTACACTATTGTCTTTTCATGAGATTATTGACAGCAAATGAAGAAACAATTCTCTCATACATCNNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320141" ref_strand="+" ref_description="SGN-U320141        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr2:19602743-19605651 FORWARD | Aliases: F17A22.24(evalue: 2e-53, score=206) genbank/nr: gi|30690809|ref|NP_182306.2| expressed protein [Arabidopsis thaliana](evalue: 1e-51, score=206)">
      <seq>aactggagcccttacacacgaccattaattcctgcactatctcctggtgttcatccctctgctgggctgacgtctgtctatcccacgtcacagctagcatcttctccacatgcctttgcagggccttactcgccattaccccctgctgctagcccttcaagcaaaacacagaagggaaagagttttccagagagacctggtcaatccatatgtcaatactacgtgaaaactggggactgtaaatttggatcatcttgtaagtttcaccatccacctgactggattgcatcaaagacaaactgtgctatcagccccataggccttcctttgcgtccgggggtgcagccttgctccttttatctactgaaagggttctgcaagtttggcagcgcgtgtaaatttgatcatcctatgggaacagtacaatatagttcatcagcttcttctcttcctgacttacaagttgctccctatatgctgcgatcttccttcacgttggctcccatgttgctgccagagttacaggctggatttgttacagggtcaaaagtggacgtctctttatctagagcaccttcttcaatgaaagtacaattggtacagttaacctaatacttccttcgtctggactttcgatctccaatatgcagttgtcaagtaagggaagttcaccattgaattcgaagtaaactcggagcactatgtattattctcccctgctactttgtctgttatactataatgttactcaaaactccggagttgaagatgtctttttgttatcccactgcttgacatgaagattacattggttgagaagacgaaaatctgtgttgtgaagtaataagacatttctctttgaaatttcttaaaaaatgattttgaaaaataaatgatctccggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="-" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="22973" stop="19761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22776" g_stop="22759" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22758" i_stop="22675" i_length="84">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22674" g_stop="22357" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="336" r_length="318" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22356" i_stop="20596" i_length="1761">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20595" g_stop="20062" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="870" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="-" ref_id="SGN-U320141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22776" e_stop="22759"/>
          <exon e_start="22674" e_stop="22357"/>
          <exon e_start="20595" e_stop="20062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAGTCCTTACTCAGTAATATAAAAATTTTCTCTCTATCAACCTTCTACAATGATGTGTAATCTCTTTTTCTATGCGGTGATTAATTTACTTTTGCAGGGACCAGTAAGTCCTGCACTATCTCCTGGTGTTCATCCCTCTGCTGGGCTGACATCTGTCTATGGGATGTCACAGCTAGCATCTTCTCCACATGCCTTTGCAGGGCCTTACTCGCCATTACCCCCTGCTGCTAGCCCTTCAAGCAAAACACAGAAGGGAAAGAGTTTTCCAGAGAGACCTGGTCAATCCATATGTCAATACTACGTGAAAACTGGGGACTGTAAATTTGGATCATCTTGTAAGTTTCACCATCCACCTGACTGGATTGCATCAAAGACAAACTGTGCTATCAGCCCCATAGGCCTTCCTTTGCGTCCGGTATGATAATGTTTCTTCTTTCTCCATTTTGTTTGATTTGACATGACAATTTATTATCTAATCTGGGTTCAAACTTGTACACTGTTATTGCTAAGTTTTCATGTCCTGGCATCATTGTGCTCTTGAGTTGCCACTAGATTTTTCTGTCTGGAATATGTTGTCTACATTCAGTTCCGACGCTTCATAGTATTGATCTTTATATTGTGATTTTCCTTTTGAGGATTTTTGTCAATTGCATGCTTAATGTGTCATTAGTTCGTAACATATGCTGAACTTTGAGGTTCATTACTCATGGATTTGACCAGAAGTCGATGATACAAGAAAGAGGGCAGACATGTACTGGAAGATGATTGTTTTATGATTTCTGTCTTGCTTAAATTTGGTGCTGACTTGTTATAAATTTGTGTTTTACGATGCTGCATTAGCTGTCTCCTTTTCCTTTTCTGATAACCGAGAAAACTTTTAAGGGTTCAATGGAGTATGTTTTGAAACTTGGTGGATAATGGTTTCTACCTCTATAGACATCTCAACTTAAATGCCAGGTTTTTTTCTGCTACATAGTTTGAACTTGTGATGTGCACCTAACCCATACATCACACAAAGTTGCATTATCTGTCTCCTGCCTTCATTATAATCATTGGTTGTTCAAGATTATATCTTCATTGTTAAAACTCAATAGCATGAATTAGAGTTCGGATTTTTGTATATTTGTTGAATTGCTATAACATTCTCTCCTTTTAAATTTCTGAGGTAATGGCGTCTTTGAAGAGGAGGATATCCTAGTCTAGTTCCTTATAACTGTTTAAAAGTCCCATGCAGTTCTCTAGAGACTTCCTTTAACTTAAGTGAAGTGTTTGTATCACCCCATTACAATATGAGTTAACCAGGGTTTGCCATGAGATTGTCATGTTTATTCATGACCTGTTCTTGTTTTATTGTATGATGTCATACAAAAATGTCTCTATTCAACACAAAGAAAATGAATGGATGTGTAATATATGCTATGCATCAAACAAGGAAACGTAGGTTTGTTGTGTTAACTTTTTAGCAGTTGGGCAGCACACGTTCTGTGTGTTCAGTTCTTTCCTAGCCTCCCCGGATTTAAACAAAGAAAAAATTGACCTAATAGTTACAAACTTACATCCATGAAGGGAATTCTAAGCTAGTCAATGATGGTTTTTCTTTTATTGAGTTAAATTTAATGAACTGAACTGCTTCTATTTGGTCTTAAAGAAAATGATGAATCTAAGCATTTTGTTGCCAATGGACAGATGCATGTATGTCGTTACCTCCTGTGATGGTTGCTTCTATAAATATGCTGCTATTAAGACCTACACGGCGTGAATGCTTTTGTTAATTTGAGCAATTTTATTTGTGCACAGTAGGTAATAATAGCTAAGTACGGTAGGTAACGATCTATTTATTCCGTTCTTCATAGCATGCTTTTCCTAGTCATTTTTGGAACTATTTATTGAACTGGGAGAGATTTAGCAGCTTGTGTTCTCAACTGCCATCATTATAATCACACACATATCGAATTGCTCATGCTCAACTGCAACAGTTGAGTTTTCATGATGTCAACCTTTTGCGTATTTCAAGAAGAGGGAGTCAGTTGAATGCTACTGTGTCTTTACCCATGTAAAAAGTACTGTAATGGTTTATATAGTTTCGTGCTTGTCTGGAAAATGACGCTGTTTGAAAGTATTGCTTCTTGTAAGTCTTCGTGTTTGAGCGTTCCACTGATATACATTATTAAAGCAGGGGGTGCAGCCTTGCTCCTTTTATCTACTGAAAGGGTTCTGCAAGTTTGGCAGCGCGTGTAAATTTGATCATCCTATGGGAACAGTACAATATAGTTCATCAGCTTCTTCTCTTCCTGACTTACAAGTTGCTCCCTATATGCTGCGATCTTCCTTCACGTTGGCTCCCATGTTGCTGCCAGAGTTACAGGCTGGATTTGTTACAGGGTCAAAAGTGGACGTCTCTTTATCTAGAGCACCTTCTTCAATGAAAGTACAATTGGTACAGTTAACCTAATACTTCCTTCGTCTGGACTTTCGATCTCCAATATGCAGTTGTCAAGTAAGGGAAGTTCACCATTGAATTCGAAGTAAACTCGGAGCACTATGTATTATTCTCCCCTGCTACTTTGTCTGTTATACTATAATGTTACTCAAAACTCCGGAGTTGAAGATGTCTTTTTGTTATCCCACTGCTTGACATGAAGATTACATTGGTTGAGAAGACGAAAATCTGTGTTGTGAAGTAATAAGACATTTCTCTTTGAAATTTCTT</genome_strand>
        <mrna_strand>AACTGGAGCCCTTACACA....................................................................................CGACCATTAATTCCTGCACTATCTCCTGGTGTTCATCCCTCTGCTGGGCTGACGTCTGTCTATCCCACGTCACAGCTAGCATCTTCTCCACATGCCTTTGCAGGGCCTTACTCGCCATTACCCCCTGCTGCTAGCCCTTCAAGCAAAACACAGAAGGGAAAGAGTTTTCCAGAGAGACCTGGTCAATCCATATGTCAATACTACGTGAAAACTGGGGACTGTAAATTTGGATCATCTTGTAAGTTTCACCATCCACCTGACTGGATTGCATCAAAGACAAACTGTGCTATCAGCCCCATAGGCCTTCCTTTGCGTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCAGCCTTGCTCCTTTTATCTACTGAAAGGGTTCTGCAAGTTTGGCAGCGCGTGTAAATTTGATCATCCTATGGGAACAGTACAATATAGTTCATCAGCTTCTTCTCTTCCTGACTTACAAGTTGCTCCCTATATGCTGCGATCTTCCTTCACGTTGGCTCCCATGTTGCTGCCAGAGTTACAGGCTGGATTTGTTACAGGGTCAAAAGTGGACGTCTCTTTATCTAGAGCACCTTCTTCAATGAAAGTACAATTGGTACAGTTAACCTAATACTTCCTTCGTCTGGACTTTCGATCTCCAATATGCAGTTGTCAAGTAAGGGAAGTTCACCATTGAATTCGAAGTAAACTCGGAGCACTATGTATTATTCTCCCCTGCTACTTTGTCTGTTATACTATAATGTTACTCAAAACTCCGGAGTTGAAGATGTCTTTTTGTTATCCCACTGCTTGACATGAAGATTACATTGGTTGAGAAGACGAAAATCTGTGTTGTGAAGTAATAAGACATTTCTCTTTGAAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320142" ref_strand="+" ref_description="SGN-U320142        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr2:19602743-19605651 FORWARD | Aliases: F17A22.24(evalue: 4e-104, score=374) genbank/nr: gi|30690809|ref|NP_182306.2| expressed protein [Arabidopsis thaliana](evalue: 3e-102, score=374)">
      <seq>ttctctctatttcgtttttccacagttggcaatttctccttggtgtgtcgtacactttttctcccatcttattgcatactaagacctaaaaaaaaaatacagatggagctgtatgggccgtcttcagggagtaatgggtcacaatctgatcatcagtcggaatgggtttcagtggagcaagaaacgggatcaatgcagaagttggggttatttggaagggaggtatacccagaaaggcctggtgttcctgactgttcgtattatttgcgaaatgggtcatgtggttatggacctaattgccggtttaaccatccgagcgatcgtgatcggcgttctggtggtaagatgcagttgggaggagttgagttcccagaaagaatgggagagccgatctgccagtactttttaagaacaggtacctgtaaatttggtgtatcctgcaagtttcaccaccctaggaactttggtggaagcttgagcaatataccactaaatacttatggatatccattacgtatgggggaaattgaatgcacctattatttgaaaacggggcattgcaaatttggtataacatgtaaattccatcaccctcaacctgctggtatgtctgtgccagcacctgcacgtccattttatccgacggtgcagtctcttcctgctcctcctgaggaatgtaacagtgcattaactggtcttagagtagcaaggcctcctattttacctggttcatatgtacctagtgcttatggtccagtgttgcttcatccaggagtggttaccattcagaactggagtccttactcaggaccagtaagtcctgcactatctcctggtgttcatccctctgctgggctgacatctgtctatgggatgtcacagctagcatcttctccacatgcctttgcagggccttactcgccattaccccctgctgctagcccttcaagcaaaacacagaagggaaagagtttttcagagagacctggtcaatccatatgtcaatactacctgaaaactggggactgtaaatttggatcatcttgtaagtttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="-" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="25412" stop="22126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25112" g_stop="25033" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25032" i_stop="24920" i_length="113">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24919" g_stop="24813" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="187" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24812" i_stop="24710" i_length="103">
            <donor d_prob="0.448" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24709" g_stop="24561" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="336" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24560" i_stop="23457" i_length="1104">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23456" g_stop="23394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="399" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23393" i_stop="23247" i_length="147">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23246" g_stop="23127" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="519" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23126" i_stop="23047" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23046" g_stop="22759" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="807" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22758" i_stop="22675" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22674" g_stop="22426" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="1056" r_length="249" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="-" ref_id="SGN-U320142" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1056</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25112" e_stop="25033"/>
          <exon e_start="24919" e_stop="24813"/>
          <exon e_start="24709" e_stop="24561"/>
          <exon e_start="23456" e_stop="23394"/>
          <exon e_start="23246" e_stop="23127"/>
          <exon e_start="23046" e_stop="22759"/>
          <exon e_start="22674" e_stop="22426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTATTTCGTTTTTCCACAGTTGGCAATTTCTCCTTGGTGTGTCGTACACTTTTTCTCCCATCTTATTGCATACTGTAAGTCACTAAAACACCATTAATGTCTTCTTTTATACATATACATAATCAGTTTTTTTTCTCAGATACTGTTTTTTTTTGTTGGTTTTGATCCTGTGAATATTGTGAAGAAGAAGACCTAAAAAAAAAATACAGATGGAGCTGTATGGGCCGTCTTCAGGGAGTAATGGGTCACAATCTGATCATCAGTCGGAATGGGTTTCAGTGGAGCAAGAAACGGGTCTCGATGGTGTTATTTTTTATTTTTAACAATTTTTGAATTTTGGGTTGTTTTGATTTTTTTTTTAGGGTTTTTGATGATTTTTTTTTTTTGGGTAATGTAGGATCAATGCAGAAGTTGGGGTTATTTGGAAGGGAGGTATACCCAGAAAGGCCTGGTGTTCCTGACTGTTCGTATTATTTGCGAAATGGGTCATGTGGTTATGGACCTAATTGCCGGTTTAACCATCCGAGCGATCGTGATCGGCGTTCTGTAAGTTGTTTATCTTGTTTTAGTTGGGTTTTATGTTATGGTAATTGCTTTTTTATATTGGCTTGGCTAATTTGGATTCATGTGGTGGAAAAAGGATAGTGTGAGGGGGTTTGCTGGTTAATGGTAAGATAATTTTATTTTTTAGTGGTTCGACTAATTTAGATTCATGTGGTAGAAAGTATACTATGACGGTTTTGGTGGTTCATGTTGAGCTAATTTGTTTTTATACTGGTCTTACTAATTTGGATTCACGCTATGGAAAGTGCACTACCGAGGGTTTGGTGGTTCATGTTAAGCTAATTCCTTTTTTACATTGAACTGACTAATTTGGATTCACGTAGTAGAAATTTTCACTGCCAGGGGTTTGGTGGTTCATGTTAAGCTAATTTCTTTTTTACATTGGGGTGACTAATTTGGATTCACGTGGTAGAGAAGTCCCCTATTAGGGGTTTGGTGGTACATGTTAAGCTAATTCCTTCTTACACTAGCCTGACTAATTTGGATTCAGGTGGTAGAGAAGTCTCCTATTAGGGGTTTGGTTGTTCGTGTTAAGCTAATTTCTTCTTATACTAGCCTGACTAATTTGGATTCACGCGGTAGAAAGCACACTATTAGGGGTTTGGTGGTTCATGTTAAGCTCCTTTCTTGAATATGTATTTGGTGTCTATGTTATCAAGGTGAATGTAGGTTTCTACATTTGTTGAATTTCTTACTTGGAAATAGTAGTTGAGAGTTGATCTTTTCTCACACATGAGGCGGATCAGAAGGTTTAGTTAGTTTATGTGGAGTATATTCCCATGGATGGTGTAGAACTGGACTACTTTCATTTACTCAGAGGCGGAGCTAAATTTTGAGTTTATGGGTTCTGGATTCTAAAACACGTATCTTTCGTGGTTCATGATAAACTATTTATACATATTAAGTGGAGTTTTAAATGCAATACAGATTTGAGCCAAAGTTACAGGTTCTACCTAACCTGCAGGCATAGCTCAAGTTCTGTCCCTGCATTTACTTTTTCAATCTTCTGAGTATGCTATATTTTGCTTGAGATGGAAAAATATGAATGCCTACATTCCTAATATGGCTGAGTGATTTTATTTTCAGGGTGGTAAGATGCAGTTGGGAGGAGTTGAGTTCCCAGAAAGAATGGGAGAGCCGATCTGCCAGGTACGCAGTTTTCAGTGTTGAAGTTTGATCTTGTTAGTTCTTCCAACACTCAAACTTCAAAGTGTTGAAGTTTTTTTTTTCCTGAATGTGGGGTATTCTTTTTAATAGTTTTGATTTCGTCGCTGACTTCACAAAGTTCATGTGCAGTACTTTTTAAGAACAGGTACCTGTAAATTTGGTGTATCCTGCAAGTTTCACCACCCTAGGAACTTTGGTGGAAGCTTGAGCAATATACCACTAAATACTTATGGATATCCATTACGTATGGTAATTGTCTCACGGTTTTATGTGTGTGTTCTTGTGTTAACTTTCCGAGTCAGCCATCTAATTTTCAACAACTATAACAGGGGGAAATTGAATGCACCTATTATTTGAAAACGGGGCATTGCAAATTTGGTATAACATGTAAATTCCATCACCCTCAACCTGCTGGTATGTCTGTGCCAGCACCTGCACGTCCATTTTATCCGACGGTGCAGTCTCTTCCTGCTCCTCCTGAGGAATGTAACAGTGCATTAACTGGTCTTAGAGTAGCAAGGCCTCCTATTTTACCTGGTTCATATGTACCTAGTGCTTATGGTCCAGTGTTGCTTCATCCAGGAGTGGTTACCATTCAGAACTGGAGTCCTTACTCAGTAATATAAAAATTTTCTCTCTATCAACCTTCTACAATGATGTGTAATCTCTTTTTCTATGCGGTGATTAATTTACTTTTGCAGGGACCAGTAAGTCCTGCACTATCTCCTGGTGTTCATCCCTCTGCTGGGCTGACATCTGTCTATGGGATGTCACAGCTAGCATCTTCTCCACATGCCTTTGCAGGGCCTTACTCGCCATTACCCCCTGCTGCTAGCCCTTCAAGCAAAACACAGAAGGGAAAGAGTTTTCCAGAGAGACCTGGTCAATCCATATGTCAATACTACGTGAAAACTGGGGACTGTAAATTTGGATCATCTTGTAAGTTTCAC</genome_strand>
        <mrna_strand>TTCTCTCTATTTCGTTTTTCCACAGTTGGCAATTTCTCCTTGGTGTGTCGTACACTTTTTCTCCCATCTTATTGCATACT.................................................................................................................AAGACCTAAAAAAAAAATACAGATGGAGCTGTATGGGCCGTCTTCAGGGAGTAATGGGTCACAATCTGATCATCAGTCGGAATGGGTTTCAGTGGAGCAAGAAACGG.......................................................................................................GATCAATGCAGAAGTTGGGGTTATTTGGAAGGGAGGTATACCCAGAAAGGCCTGGTGTTCCTGACTGTTCGTATTATTTGCGAAATGGGTCATGTGGTTATGGACCTAATTGCCGGTTTAACCATCCGAGCGATCGTGATCGGCGTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTAAGATGCAGTTGGGAGGAGTTGAGTTCCCAGAAAGAATGGGAGAGCCGATCTGCCAG...................................................................................................................................................TACTTTTTAAGAACAGGTACCTGTAAATTTGGTGTATCCTGCAAGTTTCACCACCCTAGGAACTTTGGTGGAAGCTTGAGCAATATACCACTAAATACTTATGGATATCCATTACGTATG................................................................................GGGGAAATTGAATGCACCTATTATTTGAAAACGGGGCATTGCAAATTTGGTATAACATGTAAATTCCATCACCCTCAACCTGCTGGTATGTCTGTGCCAGCACCTGCACGTCCATTTTATCCGACGGTGCAGTCTCTTCCTGCTCCTCCTGAGGAATGTAACAGTGCATTAACTGGTCTTAGAGTAGCAAGGCCTCCTATTTTACCTGGTTCATATGTACCTAGTGCTTATGGTCCAGTGTTGCTTCATCCAGGAGTGGTTACCATTCAGAACTGGAGTCCTTACTCA....................................................................................GGACCAGTAAGTCCTGCACTATCTCCTGGTGTTCATCCCTCTGCTGGGCTGACATCTGTCTATGGGATGTCACAGCTAGCATCTTCTCCACATGCCTTTGCAGGGCCTTACTCGCCATTACCCCCTGCTGCTAGCCCTTCAAGCAAAACACAGAAGGGAAAGAGTTTTTCAGAGAGACCTGGTCAATCCATATGTCAATACTACCTGAAAACTGGGGACTGTAAATTTGGATCATCTTGTAAGTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344154" ref_strand="+" ref_description="SGN-U344154        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptide chain release factor, putative, similar to peptide chain release factor 1 (Escherichia coli) GI:147567; contains Pfam profiles PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain | chr3:23268530-23271402 REVERSE | Aliases: T20O10.10(evalue: 2e-36, score=150) genbank/nr: gi|7573420|emb|CAB87736.1| translation releasing factor RF-1-like protein [Arabidopsis thaliana] (evalue: 1e-34, score=150)">
      <seq>cctcgtcggagtaaaaaagcaccatgaatactctagctaactccggcttcaccactgccggaatctccaccgcttgttccattcagtttccagtacgacgtcgttgctctggacttcccggtggaggattagcttttattcgagctccgccgaaccgtagttcttctagaagaatcatctgcatggcggaaccttatctaattaaaaaacttgattcagctgagaaaacttggaaagaattatcggttaagcttgctgatccagatgtggtctcaaatccaagtgaatatcagaagttggcgcagtcaatgtcagagctagatgaagtcgtattaacatacaggaattacaaggattgtgagaagcaattggaagaagcaaaagctttagctaaagaagctggcactgacgaggacatggctgagatggttgcttctgaaattcaatccttgacagagcaaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="+" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="34093" stop="36275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34393" g_stop="34580" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34581" i_stop="34762" i_length="182">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34763" g_stop="34819" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34820" i_stop="35511" i_length="692">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35512" g_stop="35592" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="326" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35593" i_stop="35682" i_length="90">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.725" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35683" g_stop="35740" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="384" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35741" i_stop="35892" i_length="152">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35893" g_stop="35975" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="467" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="+" ref_id="SGN-U344154" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34393" e_stop="34580"/>
          <exon e_start="34763" e_stop="34819"/>
          <exon e_start="35512" e_stop="35592"/>
          <exon e_start="35683" e_stop="35740"/>
          <exon e_start="35893" e_stop="35975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGTCGGAGTAAAAAAGCACCATGAATACTCTAGCTAACTCCGGCTTCACCACTGCCGGAATCTCCACCGCTTGTTCCATTCAGTTTCCAGTACGACGTCGTTGCTCTGGACTTCCCGGTGGAGGATTAGCTTTAATTCGAGCTCCGCCGAACCGTAGTTCTTCTAGAAGAATCATCTGCATGGCGGTACGTATAATTTTTTGAAATATCTACTTCTTTTTAGCTTAGAAGAGTTAGAATGAGTAAACATAAGGAATATTTCCTAAATTTTCGCTAATCAGTGTAAATTTAGGAATTCATTTTTTAGTGAGTTTTCAAGCTTTTTTCTGATAGTAGTCATTTCTAATGTTGGTTGTGGTATATTGCAGGAACCTTATCTAATTAAAAAACTTGATTCAGCTGAGAAAACTTGGAAAGAATTATCGGTATGCCTCTTTCTGAATTTTAATGCTTTTTGAATTTCGGATAGTTCGTTGTCTTCATTTTGAATTTCCAGTTCTATTTACTCTCCTTTCTGGATTTGGAAAATGTAAATGTAAGTGAAAATTACTTCTACTTTAAAGGAAGAGGATCGTGATAGGTTGATGGGATGAATCTAATATTTGTTTAGAAAAAAAAAATCATACATGGACATAACTAATAGTCTTTGAAATCAAATATTCGGTCTGAATTGAGCGAAAAGGCTATAGAGGATTTATGTTAGTCTGGTATTGAGAAACAGTTTTGATATATCTGCTTGTATATTGATGGAGAGGCTTGAATAGAGAGGTTATGGGAAGGGTAGGAAGGATGGAGAGACTGTTTCCAATTGACCCTCGGCTCGAAACAAAAGAGAAGAATTTGAAGCATGGTAGCACAAAAATATGACAACAAAATAACAAGATACATGGCAAATGAAGCAACAAATTATATGATTTGGATACATATGTTAATTTATTCAAGCAGTTATAACAGGAAGATAAGGTGAAGTAGGTTTCCACAACATGTAATTCGAGACAGGTTCATGTTGGCTGGTTCAAAGTCCAAGCGCATATGAAGTGTTGGAAAATTTGTAAATTTTTTCTTTATAATGTGGAATGTCGACGAATTACATTTAAAACTACTGAAACATTTCCAGGTTAAGCTTGCTGATCCAGATGTGGTCTCAAATCCAAGTGAATATCAGAAGTTGGCGCAGTCAATGTCAGAGCTAGATGAAGTACCTCACTAAATTGTCATTTTATCTCCTTTTTTATTGTTGACAAGATACACTATATTTTATTCACTTTTGTTGCCTTTTTTGAGCTAGGTCGTATTAACATACAGGAATTACAAGGATTGTGAGAAGCAATTGGAAGAAGCAAAAGGTTATCATCCACTTTTGTGGTAGTCCTAACATTTTCCTGAAAAGATTTTTTATGGCCACATGCTAGTTCTCCCTCCATGATCTCATTATAATGTTTCTGTTTGTAGTAGTTTATTCATACATATATGTGACAACCTCTTCTATTTTTGGCAGCTTTAGCTAAAGAAGCTGGCACTGACGAGGACATGGCTGAGATGGTTGCTTCTGAAATTCAATCCTTGACAGAGCAAATCAAA</genome_strand>
        <mrna_strand>CCTCGTCGGAGTAAAAAAGCACCATGAATACTCTAGCTAACTCCGGCTTCACCACTGCCGGAATCTCCACCGCTTGTTCCATTCAGTTTCCAGTACGACGTCGTTGCTCTGGACTTCCCGGTGGAGGATTAGCTTTTATTCGAGCTCCGCCGAACCGTAGTTCTTCTAGAAGAATCATCTGCATGGCG......................................................................................................................................................................................GAACCTTATCTAATTAAAAAACTTGATTCAGCTGAGAAAACTTGGAAAGAATTATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTTGCTGATCCAGATGTGGTCTCAAATCCAAGTGAATATCAGAAGTTGGCGCAGTCAATGTCAGAGCTAGATGAA..........................................................................................GTCGTATTAACATACAGGAATTACAAGGATTGTGAGAAGCAATTGGAAGAAGCAAAAG........................................................................................................................................................CTTTAGCTAAAGAAGCTGGCACTGACGAGGACATGGCTGAGATGGTTGCTTCTGAAATTCAATCCTTGACAGAGCAAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346087" ref_strand="+" ref_description="SGN-U346087        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptide chain release factor, putative, similar to peptide chain release factor 1 (Escherichia coli) GI:147567; contains Pfam profiles PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain | chr3:23268530-23271402 REVERSE | Aliases: T20O10.10(evalue: 2e-75, score=279) genbank/nr: gi|77552370|gb|ABA95167.1| peptide chain release factor 1 [Oryza sativa (japonica cultivar-group)] (evalue: 1e-75, score=286)">
      <seq>atctagttcaacgtgtaccactaacagaaactcaaggccgtgttcacacttctactgcaacagttgctatcatgccagaggctgatgaagttgatgtggaaattgacccgaaggatatagaactaacaacagcacgttctggtggtgctggagggcagaatgttaacaaggtggagactgcagttgatctttaccataaaccaacaggaattagaatcttttgtactgaagaaaggagtcagcttaaaaacaagaatcgtgcttttcaactgttgagagcaaaattgtatgagattaaggtgagggagcagcaagagtcaataagaaatcagagaaaattacaggtaggtactggtgctcggtcagaaaaaattcggacatacaactacaaggacaatagggtcactgatcatcgtctaaaaatgaactttccgcttatgacgtttcttgagggtgacatcgagacggccgttcagtcttgtgctactttggagcaacaagagctgctgcaagaacttgctgaatctgctagcgcacctgcttgataattttcagtcctctgttttcgcaagaagttctatttcttccttcgtggaacacttttcgcgcaaatcccgatgggtcctcggatcagcattgtttaaatggaccgtaaggatatcattcttgttagaattattgtcaatatggtgttagtacaaaagaatgaggagatctactgctgaacaggggctctctcagatccatttttttggaactcataacacttcaacaagaagttcatcattaaaaatcaatgtatttcttgtgtatatttccttcatcaatctgaaaatcattatattgcttgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="+" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="37315" stop="41457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37615" g_stop="37694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37695" i_stop="37960" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37961" g_stop="38033" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="153" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38034" i_stop="38126" i_length="93">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38127" g_stop="38259" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="286" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38260" i_stop="39619" i_length="1360">
            <donor d_prob="0.481" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39620" g_stop="39677" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="344" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39678" i_stop="40262" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40263" g_stop="40310" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="392" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40311" i_stop="40597" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40598" g_stop="40681" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="476" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40682" i_stop="40776" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.250" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40777" g_stop="41152" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="851" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="853" polyA_stop="864"/>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="+" ref_id="SGN-U346087" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37615" e_stop="37694"/>
          <exon e_start="37961" e_stop="38033"/>
          <exon e_start="38127" e_stop="38259"/>
          <exon e_start="39620" e_stop="39677"/>
          <exon e_start="40263" e_stop="40310"/>
          <exon e_start="40598" e_stop="40681"/>
          <exon e_start="40777" e_stop="41152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGTTCAACGTGTACCACTAACAGAAACTCAAGGCCGTGTTCACACTTCTACTGCAACAGTTGCTATCATGCCAGAGGTCAGTTATCCACATGTTCACTCAAAATTATCTCCTATTTAGTCTAGCTTAATATGACCATCTTTTTTAGTGAGAAGTATTGAAAACAGCCTTGAAATTGGCTCAAATTATTAGTTTCGTCCTTGAACACTTCCAATTTTACCTAGATTTTCCATCATTTTCTTTTAAGTGTTTTTCCCCAAATATGCCTAGGTCTTTTCAGTTCCCTGTTGTTCTGCAGCTGTTATTTCTTTTGGTTTCATTCTTGATATATTATATTGTTTCAGGCTGATGAAGTTGATGTGGAAATTGACCCGAAGGATATAGAACTAACAACAGCACGTTCTGGTGGTGCTGGAGGTATATGATGATTCAACTTTCTTGTTCTTCCCTATGCATGAACTTCTTGTGCTTATGGACATGCATATATTAATGCATGATTATGCTATGCAGGGCAGAATGTTAACAAGGTGGAGACTGCAGTTGATCTTTACCATAAACCAACAGGAATTAGAATCTTTTGTACTGAAGAAAGGAGTCAGCTTAAAAACAAGAATCGTGCTTTTCAACTGTTGAGAGCAAAATTGTAAGGGACTTGATTCATATATAAATTTTTTGCTTAATGGAGTTGCTGAACTTTTATCGTATAGAAATAAAAGATTAAAAACAGAATTGCTCAACTTAGATATGAATGAAATTAGTCCTATAGATTAGGTGAGAAGCCCTTGCTTGTAAGTTGACCTCTTCTGAGAGCAACTAGATAGGTTTGCTTGAGAAAATGATATATTTACTGATGCGAACCTGAAGTACTGCTTTCTAGATCCTATAAAGAAAGTTTCTGGTGTTTGAACTGTCTACTATGTCTGGTCACCGAAACGGATCCAGAAATTAAATTTAAGGGGTTCAGCTTTTAAGATTTTCCAGATTGAACTCATTGTACAATTAAAATCATGGGTTCAAGCCCTAATATTTGTTGAGGTTTTAGTAGGTTATCCATGCTCCATGTTGAAAGTTATGGGTTCAGGTGAACCTGTTGCCAAAAGGTTACATCTGCCCGTGTCTGGATCTTTACTTCAATTCTGCAGAATAGTTTTATTTGCATGTCAAAAATTTCACTGTTTAGAACACCTTCATTTGCTTGTTTAAGAGTGGATGTCAGATATGCTTTTCATGAAGCATGTGGTATGTGTTCTTCATCTAGATAACCTTGCCATATATAATATGTGAACTAAAGAAACCTACGTGATTAAGGAAGAATTTATTAGTATTTGGCTATGTTCTATGACAAATATAAGTCCATATACTAACTTTCACGTTTCCAATGCATCAAACAATAAAGGTCTATTGTTACCTGATTCAAAAAAAATAAAGTAAAAGGTCTATTATTGTTAGCCTTATATCCTTTAGGCATGGTGATGGTTTGACACTCATGTGCACTTATGGAAGTCCACAAGTCTACGTGATTTGGGGTTGTCAAGATTTTGGTCACTGGCTGATAGAGCCCGTGATCGATCGATCAAGACAATCACTGGAAGGAAACTTGTCCAAGAGCTGATGACCCCTCTGTGTCATCCCTTTTCTTGTTGATCTTCTCCATTTGACAATTTTTATGATGGTCATATGCATATATGAATCTCTACATAATTTTACCTTGCAATGAAATATGTCTGTAGTTTCAGACTACACTATCTGCTAGTGAACTAGAACCAAATTCTTATGGGTCATAAAATTCACCGGAATAGCTGTCTAGGCTGAAGAGCCATGGACAGTCTACATAGTTCCATGTATGTATCATCTTTTTACATTGGTACATTCATGTTTTCATTACTATGTATGCATTTTCTTTATACTAACACAAGGTGATATTTATGTAAATTTTTACCATGTCCATAACTTCTGGAATTACTATTATCTGTGCACGGATATGACTTGTGGCGTTCTTCCAGGTATGAGATTAAGGTGAGGGAGCAGCAAGAGTCAATAAGAAATCAGAGAAAATTACAGGTAAGATGACTAAACCTTCATATCGTTGATCTAGCCTACTCAAAATGCAGTAGGAAGGGGACACTCAGATCAACATGCTTGGCACCATATTTTTTATGTTTTCTTTTAAATGTCCTAATCTAAAATGATATCCATATGGAACATATAGGTTCAAGTAGCTTACATATATCTACCTGCTAATCATATAAATTCTAATATATATCATCACTACTGCAAACCTTTCATATTGATATAGTGTCTGTGACAGTCACAGATCCGTACATGTTGAGGAAATGGGTTAACACAGCCTTTTACAATTTGAATGGAAGAAAATGACCCTGCAAAGATCTCTTACGTGTAAAAATAAAGAATTATAGGTAGATTTGGCATAAAACTGAATTGTAATGAGCCACAAAACCAATTGACCTGTATATGTTATAATTGTTTCCTGGATTTATATAACATGACCAAGTTAATACAAAACATTTTTTATATGGTCAATTTTAAGCCTTGTGATCTCTTAAATTTTCGTATTAGATTAAAAAGCACGAGGACAAGATATCTTGTTAATTTTCCTTATTAGACTCTTTATATATACAATGACAGGTAGGTACTGGTGCTCGGTCAGAAAAAATTCGGACATACAACTACAAGGTAATTAAGCCATAATGCCTTGAACTGAAAAGTGTACGTGTTATTCCCCAAATGAAACTTTTGGCATCCAATTAATGATTATGATGGTATAATATCCTACCACAATCTCAAACTGCAGTTTTTGTTCATAGAAACAAGTACTTTCACCGAATATGGAAAACTTTGAACGTTGTGTTTATCCTGATTTAAAAAATGATGGTACTAGTGAAGTATACTCATGGTTCTGCATTCTTTTGAGAGATGGGGATCTTTTCATCCTTCTGATCTGTTTTCTCTGATGTTTACAGGACAATAGGGTCACTGATCATCGTCTAAAAATGAACTTTCCGCTTATGACGTTTCTTGAGGGTGACATCGAGACGGCCGTTCAGGTATGTTACTTTGCTATAAGTAGCTATTTGGAAACCCTCAGTGGGATGGTAATAATTCTCATTAAGACTGTCAAGCTAATTTCGTCTTTGCGCAGTCTTGTGCTACCTTGGAGCAACAAGAGCTGCTGCAAGAACTTGCTGAATCTGCTAGCGCACCTGCTTGATAATTTTCAGTCCTCTGTTTTCGCAAGAAGTTCTATTTCTTCCTTCGTGGAACACTTTTCGCGCAAATCCCGATGGGTCCTCGGATCAGCATTGTTTAAATGGACCGTAAGGATATCATTCTTGTTAGAATTATTGTCAATATGGTGTTAGTACAAAAGAATGAGGAGATCTACTGCTGAACAGGGGCTCTCTCAGATCCATTTTTTTGGAACTCATAACACTTCAACAAGAAGTTCATCATTAAAAATCAATGTATTTTCTTGTGTATATTTCCTTCATCAATCTGAAAATCATTATATTGCTTGT</genome_strand>
        <mrna_strand>ATCTAGTTCAACGTGTACCACTAACAGAAACTCAAGGCCGTGTTCACACTTCTACTGCAACAGTTGCTATCATGCCAGAG..........................................................................................................................................................................................................................................................................GCTGATGAAGTTGATGTGGAAATTGACCCGAAGGATATAGAACTAACAACAGCACGTTCTGGTGGTGCTGGAG.............................................................................................GGCAGAATGTTAACAAGGTGGAGACTGCAGTTGATCTTTACCATAAACCAACAGGAATTAGAATCTTTTGTACTGAAGAAAGGAGTCAGCTTAAAAACAAGAATCGTGCTTTTCAACTGTTGAGAGCAAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGATTAAGGTGAGGGAGCAGCAAGAGTCAATAAGAAATCAGAGAAAATTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTACTGGTGCTCGGTCAGAAAAAATTCGGACATACAACTACAAG...............................................................................................................................................................................................................................................................................................GACAATAGGGTCACTGATCATCGTCTAAAAATGAACTTTCCGCTTATGACGTTTCTTGAGGGTGACATCGAGACGGCCGTTCAG...............................................................................................TCTTGTGCTACTTTGGAGCAACAAGAGCTGCTGCAAGAACTTGCTGAATCTGCTAGCGCACCTGCTTGATAATTTTCAGTCCTCTGTTTTCGCAAGAAGTTCTATTTCTTCCTTCGTGGAACACTTTTCGCGCAAATCCCGATGGGTCCTCGGATCAGCATTGTTTAAATGGACCGTAAGGATATCATTCTTGTTAGAATTATTGTCAATATGGTGTTAGTACAAAAGAATGAGGAGATCTACTGCTGAACAGGGGCTCTCTCAGATCCATTTTTTTGGAACTCATAACACTTCAACAAGAAGTTCATCATTAAAAATCAATGTA-TTTCTTGTGTATATTTCCTTCATCAATCTGAAAATCATTATATTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343506" ref_strand="+" ref_description="SGN-U343506        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam PF03190: Protein of unknown function, DUF255 | chr4:1408159-1412756 FORWARD | Aliases: F4C21.12, F4C21_12(evalue: 2e-111, score=399) genbank/nr: gi|30679394|ref|NP_192229.3| expressed protein [Arabidopsis thaliana](evalue: 1e-109, score=399)">
      <seq>cctttttgcttctgcaaattcatcttctatgctcaataaactcttgatttcttcatcatcttcctcatttcggtacttgtgtaaatcaactaagcccttttttcgtgttcttcccatggcggaacaacaacaacaatcatcatcactcagtacttcttcccatacccataaacacaccaatcgtctcgcttctgaacatagtccttaccttcttcagcacgctcataatccggttgattggtatccatggggtgaggaagcgtttgctgaagctcgtaaaagagatgtcccaatcttcttatcaattggttacagtacatgtcattggtgtcatgttatggaagttgaatcttttgaagacgaagaggtagccaaattgctaaatgattggttcgttagcatcaaggttgatagagaggagcgtccagatgttgataaggtgtacatgacatatgtgcaagccttatatggtggtggtggttggccactaagtgccttcctttcacctgatttgaagcctttgatgggtgggacttactttccaccagaggacaaatttggaaggccgggatttaaaactatacttaggaaagtgaaggaagcgtggaatagcaagagagatacgcttatccagagtggggcatttgcaatagaacaattatcaaaagccttggcggcaacttcaacatcaaataagctctcagatgaggttccgcaaaccgctctgcgtaaatgtgctgatcatctggcggaaagttatgattcaaaatatggtggttttggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="+" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="41943" stop="45163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42243" g_stop="42474" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42475" i_stop="42559" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42560" g_stop="42632" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="305" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42633" i_stop="42726" i_length="94">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42727" g_stop="42748" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="327" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42749" i_stop="42831" i_length="83">
            <donor d_prob="0.231" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42832" g_stop="42910" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="406" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42911" i_stop="43007" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43008" g_stop="43040" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="439" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43041" i_stop="43816" i_length="776">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43817" g_stop="43965" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="588" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43966" i_stop="44115" i_length="150">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44116" g_stop="44272" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="745" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44273" i_stop="44820" i_length="548">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44821" g_stop="44863" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="788" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="+" ref_id="SGN-U343506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42243" e_stop="42474"/>
          <exon e_start="42560" e_stop="42632"/>
          <exon e_start="42727" e_stop="42748"/>
          <exon e_start="42832" e_stop="42910"/>
          <exon e_start="43008" e_stop="43040"/>
          <exon e_start="43817" e_stop="43965"/>
          <exon e_start="44116" e_stop="44272"/>
          <exon e_start="44821" e_stop="44863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACATCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCGGTACTCATTCGATTATTTTAAACAAAAATAGTTCAAATTGAAAATTTTATGCACTGATTTTTACTTTTTATTTCGTTATGGGAAGGTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAAGTCGGTGATTTTTTGTGTTTCGTTACATTTAATATTGAGCTTGTTTCAGCAATATTGACATATTTTATCTTCCATGTTGTTTTTTGGTTTGAAGTTGGTTACAGTACATGTCATTGGTGAGTTTTTTTGATTTTTTTTTTACTTGGAGAGGTGCTAGAAATTAGTATAATGGAAGACTAATGCTTTATTCATTGTTAAGGTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAGGTGAATCTGGAAGTTTTGTTCATGTTAATTATATCTTGAGCTACATATATTTGGATAATAATAGATTTTTTTGTTACCTTTACTTGTATATGGACAGGTTGATAGAGAGGAGCGTCCAGATGTTGATAAGGTAGAATTATTTACTGAATTATGCTTGAATTGCATTTATAATTGGTTCTTTTTTGAACTTGTTTCTTGGATTAAATCAAAATCATTCCAGTTGAACTTGCATTGATATGATATCTTCATGTAGGGATATCTTTCTAAACTATTTTGTATTCCCAGCATTTTTCAGCTCTTTTCTTTTTTCTATTTCTTTGGATTCAGTTAGTTAGTTGTTCTTTTAAGTTTTGGTTAATCTTCTCTTTTGTTTAAGCTGTTGAAAGCTAGATCCTTATGAGGTTTATAATGCATAGCTAATAATAACAGTCACTGTTTAAATGAGCAAACAAATAATATCCCTTTAGTTGCCAGAGAAGGGTTACTGTGGATCTTAATCTTTTTCATGTACCACACAAGTAGCTAAGACCTCCCAGGTACTAAGAGTGCTCTCACTACCACTAGTAGACGTCAGCTTGTTGGGTCTTTCCTGTACCAAGAACGAGGAAGATACAAATAAATGGAAACAATAACTATATATGGCTCTTGGCCCGATATAATTACATGTGTATTTATTGATGCTCTAGGTTATTTTCGGTAATCCTCATTTTAGTAACATGTTCTTTGGAAATGACTTGCTGCAATCACTTTCTTGGTTATCTGATGAGCAAACCGTGAATGCTCGAGTCTTTGCAACGTGATTAGATTGGCAATTTATTGACTAAGCTTGATTCAGTGATTATTTGATTTTCAATTTGCCAATAGTGATGCTATCAGCGTTGAGTAGCTTAATTTTGGTTCTCTCAGGTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAGGTGTGTTCATTCTGTACTTTCAGATTAAGTGGTTCAACTCAACTATTAAGTATGAATGGCATTTTTCTTAAACTCAATTGCTGTCGAGCAGCATCAATGTTCAATTTGAACTTCTGAGAATATTCCTGTGTACTTCATCATCATGCTTAGGAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAGAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCATGTAAGATTTCTGAAAATCTGTTGTTGAGTTTTCTTTGCATGTGGTGGCAAACTGGTTATTTGGAGTTAAGAGCATGTTTGGATTGGTTTATTTTAAGTGCTTCAAGTCTAAAAAGCGTTTAAGCACTTTTGGAGTGTTTGGATGAATTAAAATGGCGCTTATAAGCACTTGATTTTAAGCTAAAATGATTAAAATAAGCCAAAAGCTAAAAGTCAATCCAGGCAGGCTCTTAGTTACGAGAAGAACCACAGTATGCTTGAGAGACCTTTTACTTTCTCCTATATCTTCTCTATTACTGCTATCCTTTTCATTAAAACACTTCAGAATTCTTCAGATTACTCACGATAAATAATGCCCCTTTTCTCTGGGTAGTCAATCCTCAGTGTGGCAAGTCTTTCTCTGACTTGATCATATGACATCTTTGCATGTTCTTGAAATTTGACCATCAGAATGCTAGTTTTAAGGATTTAATTTCTCAGTTCTCAATATATGTGGTGTTGTTAATGATGATGGTCTTAACTTCCACATGACATCAACATGTGCTACAGCTGGCGGAAAGCTATGATTCAAAATATGGTGGTTTTGGTTCTG</genome_strand>
        <mrna_strand>CCTTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACACCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCG.....................................................................................GTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAA..............................................................................................TTGGTTACAGTACATGTCATTG...................................................................................GTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAG.................................................................................................GTTGATAGAGAGGAGCGTCCAGATGTTGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAG......................................................................................................................................................GAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAAAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGAAAGTTATGATTCAAAATATGGTGGTTTTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3y826t/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342527" ref_strand="+" ref_description="SGN-U342527        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam PF03190: Protein of unknown function, DUF255 | chr4:1408159-1412756 FORWARD | Aliases: F4C21.12, F4C21_12(evalue: 5e-91, score=324) genbank/nr: gi|30679394|ref|NP_192229.3| expressed protein [Arabidopsis thaliana](evalue: 4e-89, score=324)">
      <seq>accaatcccaaggagtacatggatgtcgctgagaaagcaacataggttattaggaaacacctttataatgaacagacgcgcaggctccagcatagcttcaggaatggtccctccaaagcgcctggatttctagatgattatgcatttctgatagcaggtctactggatctttatgaattcggcggttcagtcttctggttgggttgggcactagaacttcaggagaaacaggacgagttatttctcgacaaaaccggaggaggttactttaacacaactggtgaagatccttctgttcttctacgtgtgaaagaagatcatgatggggctgagccttcagggaattccgtttctgtgattaatctagtgagattggcctctatggttgctggtgaaaaatcaaaactttacagagagaccggagaacatgtcctggcggtttttgagaagaggttgaaagaagcagctgttgctgtgccactgatgtgctgtgcagcagatatgctggctattccgtccagaaagcaagtagttatagtcggagtgaagtcttctgaggagtttgaaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018L06-TtfsJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0018L06.1" temp_strand="+" temp_description="C09SLm0018L06.1  EF647612.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0018L06 upload_account_name:spain">
        <position start="46787" stop="48096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47089" g_stop="47313" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="231" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47314" i_stop="47379" i_length="66">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47380" g_stop="47583" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="435" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47584" i_stop="47658" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47659" g_stop="47796" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="573" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018L06.1" gen_strand="+" ref_id="SGN-U342527" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018L06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47089" e_stop="47313"/>
          <exon e_start="47380" e_stop="47583"/>
          <exon e_start="47659" e_stop="47796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATATTTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAGGTAAGGAAATCCAGGATCTTCTGGTGAATGTGCAAGTCCTGATTACTGTTGAACTATTCTTTGCAGGACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTGGTACATATGCATCTTACATTGACTATGTAATCCTTGTATTGTGTCCAGTAGTTTTTTAACCTTTGCATATAATAGGCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATG</genome_strand>
        <mrna_strand>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATAGGTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAG..................................................................GACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTG...........................................................................GCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4934" PGL_stop="6071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4934" e_stop="5346"/>
            <exon e_start="5433" e_stop="6071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4934" e_stop="5346" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5347" i_stop="5432" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="5433" e_stop="6071" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4934" stop="5346"/>
              <exon start="5433" stop="6071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACACAGAAAGACAAGGTGATGAGAAAGCCCCTCCCTCTAAGACTACTCAAATCAGACACAAAACAAATTTCCAATTCCATGGCGTCAGCAACAGCTCCACCAGCTCCATTCACCTTTCTTACAAGGAACCAAACCAATAATGAGCACAGAACAGATACCAGATGGTTGACAACAAAACAAAGAAGACGCCGTGTTGGCTTACAAGTTTATGCAAAAGAAGAAGGGGCTACTGGGCGACAACGTGCTCCTCCTGGTGTTGACACAAGAATTCACTGGGAAAACGAAGATGAAGGATGGGTAGGAGAGAGTAAGTCACGGTCCACACAAGAACGAATCAAAACAGACGAAAAGAATCTCTTTGATGAAAAATTCTCAGACCTCCTCAACAGTTCAGCTAATTCTCACTACCA : GTTCTTGGGAGTATCTGCAACAGCTGATCTAGAGGAAATTAAAGCTGCATATAGGAGGCTATCAAAGGAGTATCATCCAGACACAACTAATCTTCCTATAAGAGCAGCATCAGAGAAATTTATGAAACTAAGAGAAATTTATGATGTCCTGAGTGATGAGGAACAACGACGATTCTATGATTGGACACTAGCTCAGGAGACAGCAAGTCGAGAAGCAGAGAAAATGAAAATGAGGCTGCAAGATCCACGCATGCTGGAAGTAGAAAACTGGGAATCTGTTCCAGACATGGTGGATCGACTTGGTGGAAGGAACATGGAGCTGAGTAATCAGGCAAAAACTGCCCTCACATTTGATATCTTGATTATCATCTTTTCGTTTTGCTGCATTATATATGCAGTAGTCTTCAAGGAACAATATTAACAGGAACAACTATGTGCATTATACAACAACAATATTCTATACTGTCAATACGCAGTTCATACACTGCAATGACAATGGATTGGGAAACAGAACGACTAGAGCTTTAGTCATAAGTATAACTATAGTTTATTTCTATTGAGCTTACAAATTTACACTATTGTCTTTTCATGAGATTATTGACAGCAAATGAAGAAACAATTCTCTCATACATCAATAAA</gDNA_template>
            <first_frame> T  T  Q  K  D  K  V  M  R  K  P  L  P  L  R  L  L  K  S  D  T  K  Q  I  S  N  S  M  A  S  A  T  A  P  P  A  P  F  T  F  L  T  R  N  Q  T  N  N  E  H  R  T  D  T  R  W  L  T  T  K  Q  R  R  R  R  V  G  L  Q  V  Y  A  K  E  E  G  A  T  G  R  Q  R  A  P  P  G  V  D  T  R  I  H  W  E  N  E  D  E  G  W  V  G  E  S  K  S  R  S  T  Q  E  R  I  K  T  D  E  K  N  L  F  D  E  K  F  S  D  L  L  N  S  S  A  N  S  H  Y  Q :   F  L  G  V  S  A  T  A  D  L  E  E  I  K  A  A  Y  R  R  L  S  K  E  Y  H  P  D  T  T  N  L  P  I  R  A  A  S  E  K  F  M  K  L  R  E  I  Y  D  V  L  S  D  E  E  Q  R  R  F  Y  D  W  T  L  A  Q  E  T  A  S  R  E  A  E  K  M  K  M  R  L  Q  D  P  R  M  L  E  V  E  N  W  E  S  V  P  D  M  V  D  R  L  G  G  R  N  M  E  L  S  N  Q  A  K  T  A  L  T  F  D  I  L  I  I  I  F  S  F  C  C  I  I  Y  A  V  V  F  K  E  Q  Y  *  Q  E  Q  L  C  A  L  Y  N  N  N  I  L  Y  C  Q  Y  A  V  H  T  L  Q  *  Q  W  I  G  K  Q  N  D  *  S  F  S  H  K  Y  N  Y  S  L  F  L  L  S  L  Q  I  Y  T  I  V  F  S  *  D  Y  *  Q  Q  M  K  K  Q  F  S  H  T  S  I   </first_frame>
            <second_frame>  P  H  R  K  T  R  *  *  E  S  P  S  L  *  D  Y  S  N  Q  T  Q  N  K  F  P  I  P  W  R  Q  Q  Q  L  H  Q  L  H  S  P  F  L  Q  G  T  K  P  I  M  S  T  E  Q  I  P  D  G  *  Q  Q  N  K  E  D  A  V  L  A  Y  K  F  M  Q  K  K  K  G  L  L  G  D  N  V  L  L  L  V  L  T  Q  E  F  T  G  K  T  K  M  K  D  G  *  E  R  V  S  H  G  P  H  K  N  E  S  K  Q  T  K  R  I  S  L  M  K  N  S  Q  T  S  S  T  V  Q  L  I  L  T  T   : S  S  W  E  Y  L  Q  Q  L  I  *  R  K  L  K  L  H  I  G  G  Y  Q  R  S  I  I  Q  T  Q  L  I  F  L  *  E  Q  H  Q  R  N  L  *  N  *  E  K  F  M  M  S  *  V  M  R  N  N  D  D  S  M  I  G  H  *  L  R  R  Q  Q  V  E  K  Q  R  K  *  K  *  G  C  K  I  H  A  C  W  K  *  K  T  G  N  L  F  Q  T  W  W  I  D  L  V  E  G  T  W  S  *  V  I  R  Q  K  L  P  S  H  L  I  S  *  L  S  S  F  R  F  A  A  L  Y  M  Q  *  S  S  R  N  N  I  N  R  N  N  Y  V  H  Y  T  T  T  I  F  Y  T  V  N  T  Q  F  I  H  C  N  D  N  G  L  G  N  R  T  T  R  A  L  V  I  S  I  T  I  V  Y  F  Y  *  A  Y  K  F  T  L  L  S  F  H  E  I  I  D  S  K  *  R  N  N  S  L  I  H  Q  *  </second_frame>
            <third_frame>   H  T  E  R  Q  G  D  E  K  A  P  P  S  K  T  T  Q  I  R  H  K  T  N  F  Q  F  H  G  V  S  N  S  S  T  S  S  I  H  L  S  Y  K  E  P  N  Q  *  *  A  Q  N  R  Y  Q  M  V  D  N  K  T  K  K  T  P  C  W  L  T  S  L  C  K  R  R  R  G  Y  W  A  T  T  C  S  S  W  C  *  H  K  N  S  L  G  K  R  R  *  R  M  G  R  R  E  *  V  T  V  H  T  R  T  N  Q  N  R  R  K  E  S  L  *  *  K  I  L  R  P  P  Q  Q  F  S  *  F  S  L  P  :  V  L  G  S  I  C  N  S  *  S  R  G  N  *  S  C  I  *  E  A  I  K  G  V  S  S  R  H  N  *  S  S  Y  K  S  S  I  R  E  I  Y  E  T  K  R  N  L  *  C  P  E  *  *  G  T  T  T  I  L  *  L  D  T  S  S  G  D  S  K  S  R  S  R  E  N  E  N  E  A  A  R  S  T  H  A  G  S  R  K  L  G  I  C  S  R  H  G  G  S  T  W  W  K  E  H  G  A  E  *  S  G  K  N  C  P  H  I  *  Y  L  D  Y  H  L  F  V  L  L  H  Y  I  C  S  S  L  Q  G  T  I  L  T  G  T  T  M  C  I  I  Q  Q  Q  Y  S  I  L  S  I  R  S  S  Y  T  A  M  T  M  D  W  E  T  E  R  L  E  L  *  S  *  V  *  L  *  F  I  S  I  E  L  T  N  L  H  Y  C  L  F  M  R  L  L  T  A  N  E  E  T  I  L  S  Y  I  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4934" stop="5346"/>
                    <exon start="5433" stop="5853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTQKDKVMRKPLPLRLLKSDTKQISNSMASATAPPAPFTFLTRNQTNNEHRTDTRWLTTKQRRRRVGLQVYAKEEGATGRQRAPPGVDTRIHWENEDEGWVGESKSRSTQERIKTDEKNLFDEKFSDLLNSSANSHYQFLGVSATADLEEIKAAYRRLSKEYHPDTTNLPIRAASEKFMKLREIYDVLSDEEQRRFYDWTLAQETASREAEKMKMRLQDPRMLEVENWESVPDMVDRLGGRNMELSNQAKTALTFDILIIIFSFCCIIYAVVFKEQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25112" PGL_stop="20062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25112" e_stop="25033"/>
            <exon e_start="24919" e_stop="24813"/>
            <exon e_start="24709" e_stop="24561"/>
            <exon e_start="23456" e_stop="23394"/>
            <exon e_start="23246" e_stop="23127"/>
            <exon e_start="23046" e_stop="22759"/>
            <exon e_start="22674" e_stop="22357"/>
            <exon e_start="20595" e_stop="20062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.448" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.542" e_score="0.975"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25112" e_stop="25033" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25032" i_stop="24920" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24919" e_stop="24813" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.448" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24812" i_stop="24710" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24709" e_stop="24561" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24560" i_stop="23457" i_length="1104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23456" e_stop="23394" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23393" i_stop="23247" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23246" e_stop="23127" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="23126" i_stop="23047" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23046" e_stop="22759" e_length="288"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22758" i_stop="22675" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="22674" e_stop="22357" e_length="318"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.542">
            <gDNA_intron_boundary i_start="22356" i_stop="20596" i_length="1761"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20595" e_stop="20062" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25112" stop="25033"/>
              <exon start="24919" stop="24813"/>
              <exon start="24709" stop="24561"/>
              <exon start="23456" stop="23394"/>
              <exon start="23246" stop="23127"/>
              <exon start="23046" stop="22759"/>
              <exon start="22674" stop="22426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22776" stop="22759"/>
              <exon start="22674" stop="22357"/>
              <exon start="20595" stop="20062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTCTATTTCGTTTTTCCACAGTTGGCAATTTCTCCTTGGTGTGTCGTACACTTTTTCTCCCATCTTATTGCATACT : AAGACCTAAAAAAAAAATACAGATGGAGCTGTATGGGCCGTCTTCAGGGAGTAATGGGTCACAATCTGATCATCAGTCGGAATGGGTTTCAGTGGAGCAAGAAACGG : GATCAATGCAGAAGTTGGGGTTATTTGGAAGGGAGGTATACCCAGAAAGGCCTGGTGTTCCTGACTGTTCGTATTATTTGCGAAATGGGTCATGTGGTTATGGACCTAATTGCCGGTTTAACCATCCGAGCGATCGTGATCGGCGTTCT : GGTGGTAAGATGCAGTTGGGAGGAGTTGAGTTCCCAGAAAGAATGGGAGAGCCGATCTGCCAG : TACTTTTTAAGAACAGGTACCTGTAAATTTGGTGTATCCTGCAAGTTTCACCACCCTAGGAACTTTGGTGGAAGCTTGAGCAATATACCACTAAATACTTATGGATATCCATTACGTATG : GGGGAAATTGAATGCACCTATTATTTGAAAACGGGGCATTGCAAATTTGGTATAACATGTAAATTCCATCACCCTCAACCTGCTGGTATGTCTGTGCCAGCACCTGCACGTCCATTTTATCCGACGGTGCAGTCTCTTCCTGCTCCTCCTGAGGAATGTAACAGTGCATTAACTGGTCTTAGAGTAGCAAGGCCTCCTATTTTACCTGGTTCATATGTACCTAGTGCTTATGGTCCAGTGTTGCTTCATCCAGGAGTGGTTACCATTCAGAACTGGAGTCCTTACTCA : GGACCAGTAAGTCCTGCACTATCTCCTGGTGTTCATCCCTCTGCTGGGCTGACATCTGTCTATGGGATGTCACAGCTAGCATCTTCTCCACATGCCTTTGCAGGGCCTTACTCGCCATTACCCCCTGCTGCTAGCCCTTCAAGCAAAACACAGAAGGGAAAGAGTTTTCCAGAGAGACCTGGTCAATCCATATGTCAATACTACGTGAAAACTGGGGACTGTAAATTTGGATCATCTTGTAAGTTTCACCATCCACCTGACTGGATTGCATCAAAGACAAACTGTGCTATCAGCCCCATAGGCCTTCCTTTGCGTCCG : GGGGTGCAGCCTTGCTCCTTTTATCTACTGAAAGGGTTCTGCAAGTTTGGCAGCGCGTGTAAATTTGATCATCCTATGGGAACAGTACAATATAGTTCATCAGCTTCTTCTCTTCCTGACTTACAAGTTGCTCCCTATATGCTGCGATCTTCCTTCACGTTGGCTCCCATGTTGCTGCCAGAGTTACAGGCTGGATTTGTTACAGGGTCAAAAGTGGACGTCTCTTTATCTAGAGCACCTTCTTCAATGAAAGTACAATTGGTACAGTTAACCTAATACTTCCTTCGTCTGGACTTTCGATCTCCAATATGCAGTTGTCAAGTAAGGGAAGTTCACCATTGAATTCGAAGTAAACTCGGAGCACTATGTATTATTCTCCCCTGCTACTTTGTCTGTTATACTATAATGTTACTCAAAACTCCGGAGTTGAAGATGTCTTTTTGTTATCCCACTGCTTGACATGAAGATTACATTGGTTGAGAAGACGAAAATCTGTGTTGTGAAGTAATAAGACATTTCTCTTTGAAATTTCTT</gDNA_template>
            <first_frame> F  S  L  F  R  F  S  T  V  G  N  F  S  L  V  C  R  T  L  F  L  P  S  Y  C  I  L :   R  P  K  K  K  I  Q  M  E  L  Y  G  P  S  S  G  S  N  G  S  Q  S  D  H  Q  S  E  W  V  S  V  E  Q  E  T   : G  S  M  Q  K  L  G  L  F  G  R  E  V  Y  P  E  R  P  G  V  P  D  C  S  Y  Y  L  R  N  G  S  C  G  Y  G  P  N  C  R  F  N  H  P  S  D  R  D  R  R  S  :  G  G  K  M  Q  L  G  G  V  E  F  P  E  R  M  G  E  P  I  C  Q  :  Y  F  L  R  T  G  T  C  K  F  G  V  S  C  K  F  H  H  P  R  N  F  G  G  S  L  S  N  I  P  L  N  T  Y  G  Y  P  L  R  M  :  G  E  I  E  C  T  Y  Y  L  K  T  G  H  C  K  F  G  I  T  C  K  F  H  H  P  Q  P  A  G  M  S  V  P  A  P  A  R  P  F  Y  P  T  V  Q  S  L  P  A  P  P  E  E  C  N  S  A  L  T  G  L  R  V  A  R  P  P  I  L  P  G  S  Y  V  P  S  A  Y  G  P  V  L  L  H  P  G  V  V  T  I  Q  N  W  S  P  Y  S  :  G  P  V  S  P  A  L  S  P  G  V  H  P  S  A  G  L  T  S  V  Y  G  M  S  Q  L  A  S  S  P  H  A  F  A  G  P  Y  S  P  L  P  P  A  A  S  P  S  S  K  T  Q  K  G  K  S  F  P  E  R  P  G  Q  S  I  C  Q  Y  Y  V  K  T  G  D  C  K  F  G  S  S  C  K  F  H  H  P  P  D  W  I  A  S  K  T  N  C  A  I  S  P  I  G  L  P  L  R  P  :  G  V  Q  P  C  S  F  Y  L  L  K  G  F  C  K  F  G  S  A  C  K  F  D  H  P  M  G  T  V  Q  Y  S  S  S  A  S  S  L  P  D  L  Q  V  A  P  Y  M  L  R  S  S  F  T  L  A  P  M  L  L  P  E  L  Q  A  G  F  V  T  G  S  K  V  D  V  S  L  S  R  A  P  S  S  M  K  V  Q  L  V  Q  L  T  *  Y  F  L  R  L  D  F  R  S  P  I  C  S  C  Q  V  R  E  V  H  H  *  I  R  S  K  L  G  A  L  C  I  I  L  P  C  Y  F  V  C  Y  T  I  M  L  L  K  T  P  E  L  K  M  S  F  C  Y  P  T  A  *  H  E  D  Y  I  G  *  E  D  E  N  L  C  C  E  V  I  R  H  F  S  L  K  F  L </first_frame>
            <second_frame>  S  L  Y  F  V  F  P  Q  L  A  I  S  P  W  C  V  V  H  F  F  S  H  L  I  A  Y   : *  D  L  K  K  K  Y  R  W  S  C  M  G  R  L  Q  G  V  M  G  H  N  L  I  I  S  R  N  G  F  Q  W  S  K  K  R  :  D  Q  C  R  S  W  G  Y  L  E  G  R  Y  T  Q  K  G  L  V  F  L  T  V  R  I  I  C  E  M  G  H  V  V  M  D  L  I  A  G  L  T  I  R  A  I  V  I  G  V  L :   V  V  R  C  S  W  E  E  L  S  S  Q  K  E  W  E  S  R  S  A  S :   T  F  *  E  Q  V  P  V  N  L  V  Y  P  A  S  F  T  T  L  G  T  L  V  E  A  *  A  I  Y  H  *  I  L  M  D  I  H  Y  V  W :   G  K  L  N  A  P  I  I  *  K  R  G  I  A  N  L  V  *  H  V  N  S  I  T  L  N  L  L  V  C  L  C  Q  H  L  H  V  H  F  I  R  R  C  S  L  F  L  L  L  L  R  N  V  T  V  H  *  L  V  L  E  *  Q  G  L  L  F  Y  L  V  H  M  Y  L  V  L  M  V  Q  C  C  F  I  Q  E  W  L  P  F  R  T  G  V  L  T  Q :   D  Q  *  V  L  H  Y  L  L  V  F  I  P  L  L  G  *  H  L  S  M  G  C  H  S  *  H  L  L  H  M  P  L  Q  G  L  T  R  H  Y  P  L  L  L  A  L  Q  A  K  H  R  R  E  R  V  F  Q  R  D  L  V  N  P  Y  V  N  T  T  *  K  L  G  T  V  N  L  D  H  L  V  S  F  T  I  H  L  T  G  L  H  Q  R  Q  T  V  L  S  A  P  *  A  F  L  C  V  R :   G  C  S  L  A  P  F  I  Y  *  K  G  S  A  S  L  A  A  R  V  N  L  I  I  L  W  E  Q  Y  N  I  V  H  Q  L  L  L  F  L  T  Y  K  L  L  P  I  C  C  D  L  P  S  R  W  L  P  C  C  C  Q  S  Y  R  L  D  L  L  Q  G  Q  K  W  T  S  L  Y  L  E  H  L  L  Q  *  K  Y  N  W  Y  S  *  P  N  T  S  F  V  W  T  F  D  L  Q  Y  A  V  V  K  *  G  K  F  T  I  E  F  E  V  N  S  E  H  Y  V  L  F  S  P  A  T  L  S  V  I  L  *  C  Y  S  K  L  R  S  *  R  C  L  F  V  I  P  L  L  D  M  K  I  T  L  V  E  K  T  K  I  C  V  V  K  *  *  D  I  S  L  *  N  F   </second_frame>
            <third_frame>   L  S  I  S  F  F  H  S  W  Q  F  L  L  G  V  S  Y  T  F  S  P  I  L  L  H  T  :  K  T  *  K  K  N  T  D  G  A  V  W  A  V  F  R  E  *  W  V  T  I  *  S  S  V  G  M  G  F  S  G  A  R  N  G :   I  N  A  E  V  G  V  I  W  K  G  G  I  P  R  K  A  W  C  S  *  L  F  V  L  F  A  K  W  V  M  W  L  W  T  *  L  P  V  *  P  S  E  R  S  *  S  A  F   : W  W  *  D  A  V  G  R  S  *  V  P  R  K  N  G  R  A  D  L  P   : V  L  F  K  N  R  Y  L  *  I  W  C  I  L  Q  V  S  P  P  *  E  L  W  W  K  L  E  Q  Y  T  T  K  Y  L  W  I  S  I  T  Y   : G  G  N  *  M  H  L  L  F  E  N  G  A  L  Q  I  W  Y  N  M  *  I  P  S  P  S  T  C  W  Y  V  C  A  S  T  C  T  S  I  L  S  D  G  A  V  S  S  C  S  S  *  G  M  *  Q  C  I  N  W  S  *  S  S  K  A  S  Y  F  T  W  F  I  C  T  *  C  L  W  S  S  V  A  S  S  R  S  G  Y  H  S  E  L  E  S  L  L   : R  T  S  K  S  C  T  I  S  W  C  S  S  L  C  W  A  D  I  C  L  W  D  V  T  A  S  I  F  S  T  C  L  C  R  A  L  L  A  I  T  P  C  C  *  P  F  K  Q  N  T  E  G  K  E  F  S  R  E  T  W  S  I  H  M  S  I  L  R  E  N  W  G  L  *  I  W  I  I  L  *  V  S  P  S  T  *  L  D  C  I  K  D  K  L  C  Y  Q  P  H  R  P  S  F  A  S   : G  G  A  A  L  L  L  L  S  T  E  R  V  L  Q  V  W  Q  R  V  *  I  *  S  S  Y  G  N  S  T  I  *  F  I  S  F  F  S  S  *  L  T  S  C  S  L  Y  A  A  I  F  L  H  V  G  S  H  V  A  A  R  V  T  G  W  I  C  Y  R  V  K  S  G  R  L  F  I  *  S  T  F  F  N  E  S  T  I  G  T  V  N  L  I  L  P  S  S  G  L  S  I  S  N  M  Q  L  S  S  K  G  S  S  P  L  N  S  K  *  T  R  S  T  M  Y  Y  S  P  L  L  L  C  L  L  Y  Y  N  V  T  Q  N  S  G  V  E  D  V  F  L  L  S  H  C  L  T  *  R  L  H  W  L  R  R  R  K  S  V  L  *  S  N  K  T  F  L  F  E  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25112" stop="25033"/>
                    <exon start="24919" stop="24813"/>
                    <exon start="24709" stop="24561"/>
                    <exon start="23456" stop="23394"/>
                    <exon start="23246" stop="23127"/>
                    <exon start="23046" stop="22759"/>
                    <exon start="22674" stop="22357"/>
                    <exon start="20595" stop="20320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLFRFSTVGNFSLVCRTLFLPSYCILRPKKKIQMELYGPSSGSNGSQSDHQSEWVSVEQETGSMQKLGLFGREVYPERPGVPDCSYYLRNGSCGYGPNCRFNHPSDRDRRSGGKMQLGGVEFPERMGEPICQYFLRTGTCKFGVSCKFHHPRNFGGSLSNIPLNTYGYPLRMGEIECTYYLKTGHCKFGITCKFHHPQPAGMSVPAPARPFYPTVQSLPAPPEECNSALTGLRVARPPILPGSYVPSAYGPVLLHPGVVTIQNWSPYSGPVSPALSPGVHPSAGLTSVYGMSQLASSPHAFAGPYSPLPPAASPSSKTQKGKSFPERPGQSICQYYVKTGDCKFGSSCKFHHPPDWIASKTNCAISPIGLPLRPGVQPCSFYLLKGFCKFGSACKFDHPMGTVQYSSSASSLPDLQVAPYMLRSSFTLAPMLLPELQAGFVTGSKVDVSLSRAPSSMKVQLVQLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="34393" PGL_stop="35975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34393" e_stop="34580"/>
            <exon e_start="34763" e_stop="34819"/>
            <exon e_start="35512" e_stop="35592"/>
            <exon e_start="35683" e_stop="35740"/>
            <exon e_start="35893" e_stop="35975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.989"/>
          <exon-intron don_prob="0.955" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.725" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="34393" e_stop="34580" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34581" i_stop="34762" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34763" e_stop="34819" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.964">
            <gDNA_intron_boundary i_start="34820" i_stop="35511" i_length="692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35512" e_stop="35592" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.725">
            <gDNA_intron_boundary i_start="35593" i_stop="35682" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35683" e_stop="35740" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35741" i_stop="35892" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35893" e_stop="35975" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34580"/>
              <exon start="34763" stop="34819"/>
              <exon start="35512" stop="35592"/>
              <exon start="35683" stop="35740"/>
              <exon start="35893" stop="35975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACGTCGGAGTAAAAAAGCACCATGAATACTCTAGCTAACTCCGGCTTCACCACTGCCGGAATCTCCACCGCTTGTTCCATTCAGTTTCCAGTACGACGTCGTTGCTCTGGACTTCCCGGTGGAGGATTAGCTTTAATTCGAGCTCCGCCGAACCGTAGTTCTTCTAGAAGAATCATCTGCATGGCG : GAACCTTATCTAATTAAAAAACTTGATTCAGCTGAGAAAACTTGGAAAGAATTATCG : GTTAAGCTTGCTGATCCAGATGTGGTCTCAAATCCAAGTGAATATCAGAAGTTGGCGCAGTCAATGTCAGAGCTAGATGAA : GTCGTATTAACATACAGGAATTACAAGGATTGTGAGAAGCAATTGGAAGAAGCAAAAG : CTTTAGCTAAAGAAGCTGGCACTGACGAGGACATGGCTGAGATGGTTGCTTCTGAAATTCAATCCTTGACAGAGCAAATCAAA</gDNA_template>
            <first_frame> P  R  R  S  K  K  A  P  *  I  L  *  L  T  P  A  S  P  L  P  E  S  P  P  L  V  P  F  S  F  Q  Y  D  V  V  A  L  D  F  P  V  E  D  *  L  *  F  E  L  R  R  T  V  V  L  L  E  E  S  S  A  W  R :   N  L  I  *  L  K  N  L  I  Q  L  R  K  L  G  K  N  Y  R :   L  S  L  L  I  Q  M  W  S  Q  I  Q  V  N  I  R  S  W  R  S  Q  C  Q  S  *  M  K :   S  Y  *  H  T  G  I  T  R  I  V  R  S  N  W  K  K  Q  K  :  L  *  L  K  K  L  A  L  T  R  T  W  L  R  W  L  L  L  K  F  N  P  *  Q  S  K  S   </first_frame>
            <second_frame>  H  V  G  V  K  K  H  H  E  Y  S  S  *  L  R  L  H  H  C  R  N  L  H  R  L  F  H  S  V  S  S  T  T  S  L  L  W  T  S  R  W  R  I  S  F  N  S  S  S  A  E  P  *  F  F  *  K  N  H  L  H  G   : G  T  L  S  N  *  K  T  *  F  S  *  E  N  L  E  R  I  I   : G  *  A  C  *  S  R  C  G  L  K  S  K  *  I  S  E  V  G  A  V  N  V  R  A  R  *   : S  R  I  N  I  Q  E  L  Q  G  L  *  E  A  I  G  R  S  K  S :   F  S  *  R  S  W  H  *  R  G  H  G  *  D  G  C  F  *  N  S  I  L  D  R  A  N  Q  </second_frame>
            <third_frame>   T  S  E  *  K  S  T  M  N  T  L  A  N  S  G  F  T  T  A  G  I  S  T  A  C  S  I  Q  F  P  V  R  R  R  C  S  G  L  P  G  G  G  L  A  L  I  R  A  P  P  N  R  S  S  S  R  R  I  I  C  M  A  :  E  P  Y  L  I  K  K  L  D  S  A  E  K  T  W  K  E  L  S  :  V  K  L  A  D  P  D  V  V  S  N  P  S  E  Y  Q  K  L  A  Q  S  M  S  E  L  D  E  :  V  V  L  T  Y  R  N  Y  K  D  C  E  K  Q  L  E  E  A  K   : A  L  A  K  E  A  G  T  D  E  D  M  A  E  M  V  A  S  E  I  Q  S  L  T  E  Q  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34407" stop="34580"/>
                    <exon start="34763" stop="34819"/>
                    <exon start="35512" stop="35592"/>
                    <exon start="35683" stop="35740"/>
                    <exon start="35893" stop="35975"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSTMNTLANSGFTTAGISTACSIQFPVRRRCSGLPGGGLALIRAPPNRSSSRRIICMAEPYLIKKLDSAEKTWKELSVKLADPDVVSNPSEYQKLAQSMSELDEVVLTYRNYKDCEKQLEEAKALAKEAGTDEDMAEMVASEIQSLTEQIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37615" PGL_stop="41152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37615" e_stop="37694"/>
            <exon e_start="37961" e_stop="38033"/>
            <exon e_start="38127" e_stop="38259"/>
            <exon e_start="39620" e_stop="39677"/>
            <exon e_start="40263" e_stop="40310"/>
            <exon e_start="40598" e_stop="40681"/>
            <exon e_start="40777" e_stop="41152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.481" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.250" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="37615" e_stop="37694" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37695" i_stop="37960" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37961" e_stop="38033" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38034" i_stop="38126" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38127" e_stop="38259" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.481" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38260" i_stop="39619" i_length="1360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39620" e_stop="39677" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39678" i_stop="40262" i_length="585"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40263" e_stop="40310" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="40311" i_stop="40597" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40598" e_stop="40681" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.250">
            <gDNA_intron_boundary i_start="40682" i_stop="40776" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="40777" e_stop="41152" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37615" stop="37694"/>
              <exon start="37961" stop="38033"/>
              <exon start="38127" stop="38259"/>
              <exon start="39620" stop="39677"/>
              <exon start="40263" stop="40310"/>
              <exon start="40598" stop="40681"/>
              <exon start="40777" stop="41152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGAGTTCAACGTGTACCACTAACAGAAACTCAAGGCCGTGTTCACACTTCTACTGCAACAGTTGCTATCATGCCAGAG : GCTGATGAAGTTGATGTGGAAATTGACCCGAAGGATATAGAACTAACAACAGCACGTTCTGGTGGTGCTGGAG : GGCAGAATGTTAACAAGGTGGAGACTGCAGTTGATCTTTACCATAAACCAACAGGAATTAGAATCTTTTGTACTGAAGAAAGGAGTCAGCTTAAAAACAAGAATCGTGCTTTTCAACTGTTGAGAGCAAAATT : GTATGAGATTAAGGTGAGGGAGCAGCAAGAGTCAATAAGAAATCAGAGAAAATTACAG : GTAGGTACTGGTGCTCGGTCAGAAAAAATTCGGACATACAACTACAAG : GACAATAGGGTCACTGATCATCGTCTAAAAATGAACTTTCCGCTTATGACGTTTCTTGAGGGTGACATCGAGACGGCCGTTCAG : TCTTGTGCTACCTTGGAGCAACAAGAGCTGCTGCAAGAACTTGCTGAATCTGCTAGCGCACCTGCTTGATAATTTTCAGTCCTCTGTTTTCGCAAGAAGTTCTATTTCTTCCTTCGTGGAACACTTTTCGCGCAAATCCCGATGGGTCCTCGGATCAGCATTGTTTAAATGGACCGTAAGGATATCATTCTTGTTAGAATTATTGTCAATATGGTGTTAGTACAAAAGAATGAGGAGATCTACTGCTGAACAGGGGCTCTCTCAGATCCATTTTTTTGGAACTCATAACACTTCAACAAGAAGTTCATCATTAAAAATCAATGTATTTTCTTGTGTATATTTCCTTCATCAATCTGAAAATCATTATATTGCTTGT</gDNA_template>
            <first_frame> I  E  F  N  V  Y  H  *  Q  K  L  K  A  V  F  T  L  L  L  Q  Q  L  L  S  C  Q  R :   L  M  K  L  M  W  K  L  T  R  R  I  *  N  *  Q  Q  H  V  L  V  V  L  E  :  G  R  M  L  T  R  W  R  L  Q  L  I  F  T  I  N  Q  Q  E  L  E  S  F  V  L  K  K  G  V  S  L  K  T  R  I  V  L  F  N  C  *  E  Q  N   : C  M  R  L  R  *  G  S  S  K  S  Q  *  E  I  R  E  N  Y  R :   *  V  L  V  L  G  Q  K  K  F  G  H  T  T  T  R :   T  I  G  S  L  I  I  V  *  K  *  T  F  R  L  *  R  F  L  R  V  T  S  R  R  P  F  S :   L  V  L  P  W  S  N  K  S  C  C  K  N  L  L  N  L  L  A  H  L  L  D  N  F  Q  S  S  V  F  A  R  S  S  I  S  S  F  V  E  H  F  S  R  K  S  R  W  V  L  G  S  A  L  F  K  W  T  V  R  I  S  F  L  L  E  L  L  S  I  W  C  *  Y  K  R  M  R  R  S  T  A  E  Q  G  L  S  Q  I  H  F  F  G  T  H  N  T  S  T  R  S  S  S  L  K  I  N  V  F  S  C  V  Y  F  L  H  Q  S  E  N  H  Y  I  A  C </first_frame>
            <second_frame>  S  S  S  T  C  T  T  N  R  N  S  R  P  C  S  H  F  Y  C  N  S  C  Y  H  A  R   : G  *  *  S  *  C  G  N  *  P  E  G  Y  R  T  N  N  S  T  F  W  W  C  W  R :   A  E  C  *  Q  G  G  D  C  S  *  S  L  P  *  T  N  R  N  *  N  L  L  Y  *  R  K  E  S  A  *  K  Q  E  S  C  F  S  T  V  E  S  K  I  :  V  *  D  *  G  E  G  A  A  R  V  N  K  K  S  E  K  I  T   : G  R  Y  W  C  S  V  R  K  N  S  D  I  Q  L  Q   : G  Q  *  G  H  *  S  S  S  K  N  E  L  S  A  Y  D  V  S  *  G  *  H  R  D  G  R  S   : V  L  C  Y  L  G  A  T  R  A  A  A  R  T  C  *  I  C  *  R  T  C  L  I  I  F  S  P  L  F  S  Q  E  V  L  F  L  P  S  W  N  T  F  R  A  N  P  D  G  S  S  D  Q  H  C  L  N  G  P  *  G  Y  H  S  C  *  N  Y  C  Q  Y  G  V  S  T  K  E  *  G  D  L  L  L  N  R  G  S  L  R  S  I  F  L  E  L  I  T  L  Q  Q  E  V  H  H  *  K  S  M  Y  F  L  V  Y  I  S  F  I  N  L  K  I  I  I  L  L   </second_frame>
            <third_frame>   R  V  Q  R  V  P  L  T  E  T  Q  G  R  V  H  T  S  T  A  T  V  A  I  M  P  E  :  A  D  E  V  D  V  E  I  D  P  K  D  I  E  L  T  T  A  R  S  G  G  A  G   : G  Q  N  V  N  K  V  E  T  A  V  D  L  Y  H  K  P  T  G  I  R  I  F  C  T  E  E  R  S  Q  L  K  N  K  N  R  A  F  Q  L  L  R  A  K  L :   Y  E  I  K  V  R  E  Q  Q  E  S  I  R  N  Q  R  K  L  Q  :  V  G  T  G  A  R  S  E  K  I  R  T  Y  N  Y  K  :  D  N  R  V  T  D  H  R  L  K  M  N  F  P  L  M  T  F  L  E  G  D  I  E  T  A  V  Q  :  S  C  A  T  L  E  Q  Q  E  L  L  Q  E  L  A  E  S  A  S  A  P  A  *  *  F  S  V  L  C  F  R  K  K  F  Y  F  F  L  R  G  T  L  F  A  Q  I  P  M  G  P  R  I  S  I  V  *  M  D  R  K  D  I  I  L  V  R  I  I  V  N  M  V  L  V  Q  K  N  E  E  I  Y  C  *  T  G  A  L  S  D  P  F  F  W  N  S  *  H  F  N  K  K  F  I  I  K  N  Q  C  I  F  L  C  I  F  P  S  S  I  *  K  S  L  Y  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37617" stop="37694"/>
                    <exon start="37961" stop="38033"/>
                    <exon start="38127" stop="38259"/>
                    <exon start="39620" stop="39677"/>
                    <exon start="40263" stop="40310"/>
                    <exon start="40598" stop="40681"/>
                    <exon start="40777" stop="40845"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVQRVPLTETQGRVHTSTATVAIMPEADEVDVEIDPKDIELTTARSGGAGGQNVNKVETAVDLYHKPTGIRIFCTEERSQLKNKNRAFQLLRAKLYEIKVREQQESIRNQRKLQVGTGARSEKIRTYNYKDNRVTDHRLKMNFPLMTFLEGDIETAVQSCATLEQQELLQELAESASAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42243" PGL_stop="44863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42243" e_stop="42474"/>
            <exon e_start="42560" e_stop="42632"/>
            <exon e_start="42727" e_stop="42748"/>
            <exon e_start="42832" e_stop="42910"/>
            <exon e_start="43008" e_stop="43040"/>
            <exon e_start="43817" e_stop="43965"/>
            <exon e_start="44116" e_stop="44272"/>
            <exon e_start="44821" e_stop="44863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.784" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.231" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.994"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="42243" e_stop="42474" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42475" i_stop="42559" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42560" e_stop="42632" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42633" i_stop="42726" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42727" e_stop="42748" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.231" acc_prob="0.880">
            <gDNA_intron_boundary i_start="42749" i_stop="42831" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42832" e_stop="42910" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42911" i_stop="43007" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43008" e_stop="43040" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.930">
            <gDNA_intron_boundary i_start="43041" i_stop="43816" i_length="776"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43817" e_stop="43965" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.938">
            <gDNA_intron_boundary i_start="43966" i_stop="44115" i_length="150"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="44116" e_stop="44272" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="44273" i_stop="44820" i_length="548"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="44821" e_stop="44863" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42243" stop="42474"/>
              <exon start="42560" stop="42632"/>
              <exon start="42727" stop="42748"/>
              <exon start="42832" stop="42910"/>
              <exon start="43008" stop="43040"/>
              <exon start="43817" stop="43965"/>
              <exon start="44116" stop="44272"/>
              <exon start="44821" stop="44863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACATCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCG : GTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAA : TTGGTTACAGTACATGTCATTG : GTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAG : GTTGATAGAGAGGAGCGTCCAGATGTTGATAAG : GTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAG : GAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAGAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCAT : CTGGCGGAAAGCTATGATTCAAAATATGGTGGTTTTGGTTCTG</gDNA_template>
            <first_frame> H  F  C  F  C  K  F  I  F  Y  A  Q  *  T  L  D  F  F  I  I  F  L  I  S  V  L  V  *  I  N  *  A  L  F  S  C  S  S  H  G  G  T  T  T  T  I  I  I  T  Q  Y  F  F  P  Y  P  *  T  H  Q  S  S  R  F  *  T  *  S  L  P  S  S  A  R  S  *  S   : G  *  L  V  S  M  G  *  G  S  V  C  *  S  S  *  K  R  C  P  N  L  L  I  N :   W  L  Q  Y  M  S  L  :  V  S  C  Y  G  S  *  I  F  *  R  R  R  G  S  Q  I  A  K  *  L  V  R  *  H  Q   : G  *  *  R  G  A  S  R  C  *  *   : G  V  H  D  I  C  A  S  L  I  W  W  W  W  L  A  T  K  C  L  P  F  T  *  F  E  A  F  D  G  W  D  L  L  S  T  R  G  Q  I  W  K  A  G  I  *  N  Y  T  *  :  E  S  E  G  S  V  E  *  Q  E  R  Y  A  Y  P  E  W  G  I  C  N  R  T  I  I  R  S  L  G  G  N  F  N  I  K  *  A  L  R  *  G  S  A  N  R  S  A  *  M  C  *  S   : S  G  G  K  L  *  F  K  I  W  W  F  W  F   </first_frame>
            <second_frame>  I  F  A  S  A  N  S  S  S  M  L  N  K  L  L  I  S  S  S  S  S  S  F  R  Y  L  C  K  S  T  K  P  F  F  R  V  L  P  M  A  E  Q  Q  Q  Q  S  S  S  L  S  T  S  S  H  T  H  K  H  I  N  R  L  A  S  E  H  S  P  Y  L  L  Q  H  A  H  N  P  :  V  D  W  Y  P  W  G  E  E  A  F  A  E  A  R  K  R  D  V  P  I  F  L  S   : I  G  Y  S  T  C  H  W :   C  H  V  M  E  V  E  S  F  E  D  E  E  V  A  K  L  L  N  D  W  F  V  S  I  K  :  V  D  R  E  E  R  P  D  V  D  K  :  V  Y  M  T  Y  V  Q  A  L  Y  G  G  G  G  W  P  L  S  A  F  L  S  P  D  L  K  P  L  M  G  G  T  Y  F  P  P  E  D  K  F  G  R  P  G  F  K  T  I  L  R :   K  V  K  E  A  W  N  S  K  R  D  T  L  I  Q  S  G  A  F  A  I  E  Q  L  S  E  A  L  A  A  T  S  T  S  N  K  L  S  D  E  V  P  Q  T  A  L  R  K  C  A  D  H  :  L  A  E  S  Y  D  S  K  Y  G  G  F  G  S  </second_frame>
            <third_frame>   F  L  L  L  Q  I  H  L  L  C  S  I  N  S  *  F  L  H  H  L  P  H  F  G  T  C  V  N  Q  L  S  P  F  F  V  F  F  P  W  R  N  N  N  N  N  H  H  H  S  V  L  L  P  I  P  I  N  T  S  I  V  S  L  L  N  I  V  L  T  F  F  S  T  L  I  I  R :   L  I  G  I  H  G  V  R  K  R  L  L  K  L  V  K  E  M  S  Q  S  S  Y  Q  :  L  V  T  V  H  V  I   : G  V  M  L  W  K  L  N  L  L  K  T  K  R  *  P  N  C  *  M  I  G  S  L  A  S  R :   L  I  E  R  S  V  Q  M  L  I  R :   C  T  *  H  M  C  K  P  Y  M  V  V  V  V  G  H  *  V  P  S  F  H  L  I  *  S  L  *  W  V  G  L  T  F  H  Q  R  T  N  L  E  G  R  D  L  K  L  Y  L   : G  K  *  R  K  R  G  I  A  R  E  I  R  L  S  R  V  G  H  L  Q  *  N  N  Y  Q  K  P  W  R  Q  L  Q  H  Q  I  S  S  Q  M  R  F  R  K  P  L  C  V  N  V  L  I  I :   W  R  K  A  M  I  Q  N  M  V  V  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42244" stop="42474"/>
                    <exon start="42560" stop="42632"/>
                    <exon start="42727" stop="42748"/>
                    <exon start="42832" stop="42910"/>
                    <exon start="43008" stop="43040"/>
                    <exon start="43817" stop="43965"/>
                    <exon start="44116" stop="44272"/>
                    <exon start="44821" stop="44862"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFASANSSSMLNKLLISSSSSSFRYLCKSTKPFFRVLPMAEQQQQSSSLSTSSHTHKHINRLASEHSPYLLQHAHNPVDWYPWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEEVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSAFLSPDLKPLMGGTYFPPEDKFGRPGFKTILRKVKEAWNSKRDTLIQSGAFAIEQLSEALAATSTSNKLSDEVPQTALRKCADHLAESYDSKYGGFGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47089" PGL_stop="47796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47089" e_stop="47313"/>
            <exon e_start="47380" e_stop="47583"/>
            <exon e_start="47659" e_stop="47796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.719" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="47089" e_stop="47313" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.719" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47314" i_stop="47379" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47380" e_stop="47583" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47584" i_stop="47658" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47659" e_stop="47796" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47089" stop="47313"/>
              <exon start="47380" stop="47583"/>
              <exon start="47659" stop="47796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATATTTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAG : GACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTG : GCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATG</gDNA_template>
            <first_frame> P  K  E  Y  M  D  V  A  E  K  A  T  Y  F  I  R  K  H  L  Y  N  E  Q  T  R  R  L  Q  H  S  F  R  N  G  P  S  K  A  P  G  F  L  D  D  Y  A  F  L  I  A  G  L  L  D  L  Y  E  F  G  G  S  V  F  W  L  G  W  A  L  E  L  Q  E  K  Q  :  D  E  L  F  L  D  K  T  G  G  G  Y  F  N  T  T  G  E  D  P  S  V  L  L  R  V  K  E  D  H  D  G  A  E  P  S  G  N  S  V  S  V  I  N  L  V  R  L  A  S  M  V  A  G  E  K  S  K  L  Y  R  E  T  G  E  H  V  L  :  A  V  F  E  K  R  L  K  E  A  A  V  A  V  P  L  M  C  C  A  A  D  M  L  A  I  P  S  R  K  Q  V  V  I  V  G  V  K  S  S  E  E  F  E  S  M </first_frame>
            <second_frame>  P  R  S  T  W  M  S  L  R  K  Q  H  I  L  L  G  N  T  F  I  M  N  R  R  A  G  S  S  I  A  S  G  M  V  P  P  K  R  L  D  F  *  M  I  M  H  F  *  *  Q  V  Y  W  I  F  M  N  S  A  V  Q  S  S  G  W  V  G  H  *  N  F  R  R  N  R :   T  S  Y  F  S  T  K  P  E  E  V  T  L  T  Q  L  V  K  I  L  L  F  F  Y  V  *  K  K  I  M  M  G  L  S  L  Q  G  I  P  F  L  *  L  I  *  *  D  W  P  L  W  L  L  V  K  N  Q  N  F  T  E  R  P  E  N  M  S  W :   R  F  L  R  R  G  *  K  K  Q  L  L  L  C  H  *  C  A  V  Q  Q  I  C  W  L  F  R  P  E  S  K  *  L  *  S  E  *  S  L  L  R  S  L  K  A   </second_frame>
            <third_frame>   Q  G  V  H  G  C  R  *  E  S  N  I  F  Y  *  E  T  P  L  *  *  T  D  A  Q  A  P  A  *  L  Q  E  W  S  L  Q  S  A  W  I  S  R  *  L  C  I  S  D  S  R  S  T  G  S  L  *  I  R  R  F  S  L  L  V  G  L  G  T  R  T  S  G  E  T   : G  R  V  I  S  R  Q  N  R  R  R  L  L  *  H  N  W  *  R  S  F  C  S  S  T  C  E  R  R  S  *  W  G  *  A  F  R  E  F  R  F  C  D  *  S  S  E  I  G  L  Y  G  C  W  *  K  I  K  T  L  Q  R  D  R  R  T  C  P   : G  G  F  *  E  E  V  E  R  S  S  C  C  C  A  T  D  V  L  C  S  R  Y  A  G  Y  S  V  Q  K  A  S  S  Y  S  R  S  E  V  F  *  G  V  *  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018L06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47089" stop="47313"/>
                    <exon start="47380" stop="47583"/>
                    <exon start="47659" stop="47796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKEYMDVAEKATYFIRKHLYNEQTRRLQHSFRNGPSKAPGFLDDYAFLIAGLLDLYEFGGSVFWLGWALELQEKQDELFLDKTGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASMVAGEKSKLYRETGEHVLAVFEKRLKEAAVAVPLMCCAADMLAIPSRKQVVIVGVKSSEEFESM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 13912 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 1987 bytes was the average size of a spliced alignment
$ 12272 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2045 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 11:21:52
-->
