<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 05:25:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318689" ref_strand="+" ref_description="SGN-U318689        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:19901399-19903380 FORWARD | Aliases: F4P12.370, AT3G53660(evalue: 1e-09, score=62) genbank/nr: hypothetical(evalue: 9e-20, score=101)">
      <seq>tttggtcttccgttgaaatcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattgtttcgatcactgtactttgagattttgtggtgtggagctgaatcgagttgagtttttttttttttgggaggggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatctttacgatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgcgcttcttgcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaactgaagatatgcatgcaaatgatgctgacactggcagtacggactcagagaaatgcttgatcaagtcctcagaatttccatgctcttctatgagcactccccctgctgagttggttcatgagaaggagcaggaggctgatgctaaatcaactgacttgccttattcacgttccatatcttcacctacagctttgaagcttgtatctgccattaaaggtagccgtgagaaacaaggcaagccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccaacagcagcttcgcatgtgccaatcaaggggcaacgccacaggagtgaccacaggaagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggagttgttatagagttgttggcatttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgactttttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="10870" stop="6723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10570" g_stop="10033" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10032" i_stop="9165" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9164" g_stop="8746" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="958" r_length="419" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8745" i_stop="7664" i_length="1082">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7663" g_stop="7024" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1598" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1599" polyA_stop="1626"/>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U318689" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1597</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10570" e_stop="10033"/>
          <exon e_start="9164" e_stop="8746"/>
          <exon e_start="7663" e_stop="7024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAG-TTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCTGTGAGTTTTGTGTCCTGAGACATTTAATGTTAGTTTTCTAGCATAATCATTTTAACGATGACGGGTTTCTTACATATAAAAAAGACGTAGAAGGTTTTTTGACTCTTGTTCTAAATGAAGTTTTAGTTCACTTGAACATATCTTTTGTTATATAAACAATGTATTGTTGTTGTCTGCTTACACTTGTATTGCCAATTTTGAAGCATATTCATTTTAACGATAAAGGATTTCTTACATATAAAAAAGACCTAGTCCAAGATATCCTATGTTATTTAGGAAAATGTACTTTTGTCTGCTTAGCTGTATGCATTCTGGCCTCAGTTCACGAATCACAACATGAGCATTACTAGTGGGAAGTGTTAATGGTTTATGTGTCATGTTTAGTTTCTTTTCACAGTTTTGAGGGATGGGGGATATCTATTATGTCTTGAATAACTTGTAGGAGGATATTCGAGCCATGGGCATATGAAGTCTGCTGTTTCCTTCAGCCATACCTTTATAACTATTGCTTATTTGTTCACCTTTACCCCTTTTGGTGGTAGGTTGCTATAGGATTTATCAGTTCTCATCTGTTTGGGCTATTGTTTTGTCAATATAATGAGCCATAATTTCCTTAGTACTCGCCCCGTCCCGATTTATGTGGCACGGGTTGACTTGGTGCAAGGCTTAAGAAGATAACTTTTGAAATCTGTGGTCTAAACAACTCCTTTACCATGGTAAAAGGAGAACTTTAAGGTAACATTGTCTTCAACTGTAGAAAGGTGGTATTCTTTTTGAGACGACCTAAAATGGAAAATGTGTCACATAAATTGGGACAGAGGTTGTATATCTTTTTTTTTCAGCATATGTTTTGCGGTGCCTTGTAACTCTCTATCTGTTATTTGCACATGGCTCTCGACTCTGTTATAAAGCTGAAGCAACAGTATTTTGGAACAGCAGTTGGAGCATATAAATTCCCTCTCATACACAGGGGAGACTCTGTGTTGGGATTTTTTCAGCGTTGAGCTATTAAGTTATTTCTTATCATATTGTTGGTTAACAGTTGTGTTTTTCCCTTTCTTTTTTTTTTTTTTAATTCTCAGACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</genome_strand>
        <mrna_strand>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGCGCTTCTTGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324998" ref_strand="+" ref_description="SGN-U324998        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr3:19894857-19896860 FORWARD | Aliases: F4P12.330(evalue: 2e-52, score=203) genbank/nr: gi|22331772|ref|NP_190931.2| expressed protein [Arabidopsis thaliana] gi|18377877|gb|AAL67124.1| AT3g53630/F4P12_330 [Arabidopsis thaliana] gi|20453315|gb|AAM19896.1| AT3g53630/F4P12_330 [Arabidopsis thaliana](evalue: 1e-50, score=203)">
      <seq>gtttttttttttttttttagctaaaatcattttggttccaataaacccccaaaaacctctgcttaaacccttcgaagttggaatccaatcaaccaccgccaaccaccgtcaatcgccgtcaaccgccatgaattcattcaacgccaccaccccaaacttcgacaaccttctcctccaatccctagtgaaccgtctccaaattcgtcctccttcaaacccaacttcctccttttccccacaatccctcgaagatctcctcttcaacactctccctttctccgacgaagatgaagacaacgacgatgatgataacaacaacgagtcttcttcttccaaatctcagctagcgaaagaagaaacaagggttgagaaagagataatccggacaatcctatctggaaaaactgattctctaaaaccaaattcaggtcaagctgttgctattggtgaacatcatatatgtatcgggtttcatgaggatacaggttcggattatcgggtgtgggagtggcatggtcatatcatgctttttgatgaggaaaatgggtattcacctgaatacatttatgggaattactttgaaagagttaatggtaagcttatgaagaagaaacaagaggagaaagaagaagaggaggagagtgagaaagaagaaaaggagagtgatgagaaagaggagaaggttgggaatttggggttgagagagttgatatcatcaggagattcgaataacgaaggtcgaattcttaggaggaatatgaatgctggctctacaagggtctagaggtttgctgttttacaccaaagaaacattttgaggtttgctgcgtatcttcgcttggctgcaatggagagtttttacatttcctttttcccaagctacttgatgttgtgttcaaatagcatttttgcaaattgtgatcttacatggtctgaaatattgcatttgcaaagcaaaataggaactcctagcagatgagaatagctctttatttttctttaattctctattaatcttttgaattttctttattacaagggaggttgaaaatctgttacagaataagctactcttctttcataagcaaatgtttttggagcttttgtatgtagaaaatgattttagctaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="27078" stop="17352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22900" g_stop="22873" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.679"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22872" i_stop="21948" i_length="925">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21947" g_stop="21199" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="777" r_length="749" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21198" i_stop="18005" i_length="3194">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18004" g_stop="17652" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="1130" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1131" polyA_stop="1144"/>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U324998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22900" e_stop="22873"/>
          <exon e_start="21947" e_stop="21199"/>
          <exon e_start="18004" e_stop="17652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTGGTTTGTATTATTAAAAATGAAACTATAATTGATTTTATAAATAATTGTATTGTATATATTGTCCGAACTTGTTCTAATTTTTGTCATGCTCTAGCAATTACGCTTTCTAGACCACTATCGTTTAGCTATTTTGGGACAAGTTTATAGTAACAGAAATCTAGGAATAAATAAAATAACTAGTACTTACATTTCATGTGTGATTATTCCTTTAAAAAAATACTAGTAACTGAAATAAAATAGCTCATGAATAAATACTATAGATAACATGATAAATCATCATATACGATAGTCATTATAGATGAAGTCATAATTAAAGTCCATAACGGGATAACTTGTTACTTGTAAGTCCAGGAATGAATGCTTATTAAGGAATTGATAATCTGATATGCCATTATCGGATTCCATCCTCTGGCAATTATTGACTCGATAATGAACAAAATCGCTTCACTTCAAAGTAAAGATTTGTCCTGATCGAACTTGAGATTCTGACAACCAAAGGAAAAGAAACAAATTACTACACGAGTAATACTTATTTCAATTACTCTATTACTTGTTCACAATTAAACAGATTAAATTAGGGATAATGTGAAAGTAAAAATCAATTTATATCAAGTGTTACTAATACCGCTCATATATATATATATATATAAATATATGCGCTAAGCCTTTTTGATTTATTTGGGCAGTTTTTTGAAAGATCAAAAGTATTCATTTCTTAAAAAATTATTTATTTTGAAGAATAAAGGTGTTTGGTCCATATTTTCATTTAAAAAATGTAAAACAAGTAGTATAAGCTAATTTTCATATTTCAATTGAAAATTTTCAAAACTAGAATCTCCAGAAAATAAAATTATGCCTATTAAAACTACATTTTTAAAAGCATTTTTTCTTTTTCAAAAAAGACGGTTCATATAAAATAAGATATTTCACAGCTTCCCTGTAATATTTTGGTTCCAATAAACCCCCAAAAACCTCTGCTTAAACCCTTCGAAGTTGGAATCCAATCAACCACCGCCAACCACCGTCAATCGCCGTCAACCGCCATGAATTCATTCAACGCCACCACCCCAAACTTCGACAACCTTCTCCTCCAATCCCTAGTGAACCGTCTCCAAATTCGTCCTCCTTCAAACCCAACTTCCTCCTTTTCCCCACAATCCCTCGAAGATCTCCTCTTCAACACTCTCCCTTTCTCCGACGAAGATGAAGACAACGACGATGATGATAACAACAACGAGTCTTCTTCTTCCAAATCTCAGCTAGCGAAAGAAGAAACAAGGGTTGAGAAAGAGATAATCCGGACAATCCTATCTGGAAAAACTGATTCTCTAAAACCAAATTCAGGTCAAGCTGTTGCTATTGGTGAACATCATATATGTATCGGGTTTCATGAGGATACAGGTTCGGATTATCGGGTGTGGGAGTGGCATGGTCATATCATGCTTTTTGATGAGGAAAATGGGTATTCACCTGAATACATTTATGGGAATTACTTTGAAAGAGTTAATGGTAAGCTTATGAAGAAGAAACAAGAGGAGAAAGAAGAAGAGGAGGAGAGTGAGAAAGAAGAAAAGGAGAGTGATGAGAAAGAGGAGAAGGTTGGGAATTTGGGGTTGAGAGAGTTGATATCATCAGGAGATTCGAATAACGAAGGTCGAATTCTTAGGAGGAATATGAATGCTGGCTCTACAAGGTTTGTGATGAATCAGCACTTCTTCGCCTTTTAGTTTTGTTATACTAAGTTCATTTGCATATATGCTCCATTGGTGTTTTGGTTGAGTATTTAGCATGTTTAGATATTTTGTTTATTGTGTTTCGGTTATCGCACTATTTTGTTGTTATTTTTTCCTTTCTGAATGCGTGTACTACTTTACTTGTTAGTTGGTATGTTCTCTTTAATGTCGTTTTTTCTTTTCGTATCTACTTTAATTTGCTTCACTTGTGCTGAGGGTCCTTCGGAAGCAGTCTCTCTACCCATAAGGTAGGGGTAAGGTCTGAGTACACTCTACCATTCCCGGATCCAACTTGTGGGATTTCACGGGGTGTGTTGTTGTATTATAATATCACGAACGCTTTAGATATGTTTTGGCTGTTTGCTTGTTCTGAATTCCGAATGCGCATCCCATATTAGGTAAATACATCGTCATTAAAAGTCTATTTCAGCCTCAAGTTCTTAGATAACTTCCACTTTTCCTACATCAATAGCTTTTTCATCGAAGTTAATAACAAGATGCAAATTAAGATATTGTGTTCCATATGTTAAGATCTTTAGCATTATACTACTCTAAAATGTGACCGTTAACGCAAAAAAGGGAAAATGGTTAGATGGATGGTGAGTGAAATTTGTCTTCAGAAGCCATGGAAAAAAATAAAACTACTTCTGTCAAATTCTGATTTTTTTTCTGAGTAGAGAATCACCAACACTATAAATGGAAATCCACCAGTTTCTCAAAGAGTTCTATATTTTAGTTCTTGTTGAACACTACTAAGTTTGCTGTTGATTAGAATGAGGGGAAAGTGTTATCTTTATCTTCAAGAAAGTATAATCTTATGTTAGTTTTCCAAGAACCAGAATTTAAGAGTTAAGGCTATTATCACACTAAAGTAGCAATTTTATACATTTGAAGACAATATGAACAACTAGATACATAGGATGTTATCCTCGGCATATTAGGGTGATGCTTTAGAGTGATATCTTATGTGTGCTAAGCCAGCAAGACTTGGCTGAGGAGAAATATAACTATGTAGTGCAGCACTTAGTGATTTATCGTGTTCACTAATCTTTGAACTGTGCTGAAGTATTGCTTTTATAATCTGAACTCTTGGGGGTTGTTTGGTTGGTGGGACTTGAATAACAATTTCGGGATAAAATGTGGGATCATTTAATCCCGTGTTTGGTTATGGCCTATGGGTATTAATTGGGCCCATAACCATTTATACTAAAATGGTGGGACTATCTATCCCATATAGAAGGTAGAATATCCTTGTCTATCCCATCTCATTAGCGTAACGACCCCTTAATATGATACAAGGACTACAAAAACAGTTGGTGCTTTGCTGGATCCATGTCAAATAGAGTACAATAATAATGTGCTCATACGCATTGAAGCCAAAGAGACGTAGTGATCACTATATAGGGTCGACTCCTGTACAGTCTCAATTGTAATTTATGCTAAAGATCTTCCAAGAAAGTAAAGTCACTGAATGATCTATGATGAAGAATTTTCTTTAATCTGTTTGTGTGTACTAATCGTTAATTTCAGGTACTTGTTTGTTTAATTTCTTTCATTATCTTTATTGTGTGTCCAAACACATATAAGATATGGAAGAGGAACAACCCCACACTAAGTTGCTCAGGTTCTCCAAAAATGTTAGCGCATCCGTGTCGGATCCTTCAAAAATATACTATATTTGGAGGATCCCACACACACCGCTTGACATTTTTGAAGAGTCTGAGCAACATAGACCCCCACAATATGGATAATAAAACTATTCTAGTTATTGAATTAAAAAAAAATATGGTGCGAGTCACTTTTTAGTATTTCGGTGTTTCCTCCATTTTAAAAGCAACAACAACACACATTTGGAGTTTGCTTTTCCTGAGAACCCAACTAAAAAGAATTAAGTGTAAAATACCAAAATACTTTGTTCAAAACTGTGCAAAACTGAATTGTTATTGCTGAAGGTAACAGATAGGAATTCAGTATATTGCTGTTTATTTATATGCTGATTCATATATTGTTTGAATGTAACAGTTAATAGAAATAGAAAATAGAGGCTGAATATGCAGTCTTAAGATCGAGCTTGTATTTCATATTGCGCCAACTTTTTCCCCGCAAAGAAGCTCTCTTGCTTTAAATAATGTCTGACCCATCACCTGCCTCGTCCCATTAAATTAAGTCTTAGCCTGCCCCACCCTACCCTGGCCCACTAATCGTCGCCCTGCGACACTCTGCCACGTTAAGGATTTGACCTGCCTTGTCCCACCTCTGCCCTGCCATATCGACATCCCCAGTCTTCTCCCTATACAAAAATGTGGTTATCATACAACAAAATTGACAATATTGTGTTGCTATAAGAGCTTCAAAGTGTGAAAATGTGCTATATTTTTCATTGTAAGAACAGGGACTGATCTAGAAATGGGTTTTGAAAGGGAGTGGTAGGAAGTGGGAAGGAACTGTTGAACCAAATCTTTTTTAAGCACCATAAGATAATATAGTAATTCTCAAGACAAAGGCATATCCGAGTAAGCGACTTCTATTACTTCCAACAACAACAAAAAACCTGGTGTAATCTCATAAGTTGGGCCTGGGGAGGGTAGAGTACGCAGACCTTTACCCTACCTTGAGAATTGAGAAGGTAGAGAGATTGTTTCCAATAGACCCTTGGCTGAAACGAACGATGAAAAAGAGGCAGCAGAAACAACAAGAAAAAAATAAGATATAGAGGCCAAAATATAGCATGTATAGTAATAGAAATCTAAAGATAAGGAACAAAAGAAGACTAATACAAATACTCTGAGAATGGGAACTTCTGTTACTTCCGTAGAAATATATTTATCTCATAGCTGATCCTTCATAAGATCTGTTGCATACATATAATGCTGGGACTCTCTAGTAACCTTCTAAGCATGCATATTTGCTAGACATCTTTATTGACGATCTTTATCTCTCCAAATTTTAGTTAGTATCCATGTCTTTCACTTGATGCTTTCTTCCTATACGATGTTTTAACTTACTAGTTGCTTCTTGTGTGCTTGAATGTGGTTTTAGCTGATTTTTCTCCACTTCTAATATTTGATTGTTCTTTTGCGCTACGAAGAATATTTTATGTTCCTCGTATCAGTTCATTCTTCTTGACTGAGTTTTCCTTGTTACACACTGACAGGGTCTAGAGGTTTGCTGTTTTACACCAAAGAAACATTTTGAGGTTTGCTGCGTATCTTCGCTTGGCTGCAATGGAGAGTTTTTACATTTCCTTTTTCCCAAGCTACTTGATGTTGTGTTCAAATAGCATTTTTGCAAATTGTGATCTTACATGGTCTGAAATATTGCATTTGCAAAGCAAAATAGGAACTCCTAGCAGATGAGAATAGCTCTTTATTTTTCTTTAATTCTCTATTAATCTTTTGAATTTTCTTTATTACAAGGGAGGTTGAAAATCTGTTACAGAATAAGCTACTCTTCTTTCATAAGCAAATGTTTTTGGAGCTTTTGTATGTAGAAAATGATTTTAGCTAA</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTTTTAGCTAAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTTCCAATAAACCCCCAAAAACCTCTGCTTAAACCCTTCGAAGTTGGAATCCAATCAACCACCGCCAACCACCGTCAATCGCCGTCAACCGCCATGAATTCATTCAACGCCACCACCCCAAACTTCGACAACCTTCTCCTCCAATCCCTAGTGAACCGTCTCCAAATTCGTCCTCCTTCAAACCCAACTTCCTCCTTTTCCCCACAATCCCTCGAAGATCTCCTCTTCAACACTCTCCCTTTCTCCGACGAAGATGAAGACAACGACGATGATGATAACAACAACGAGTCTTCTTCTTCCAAATCTCAGCTAGCGAAAGAAGAAACAAGGGTTGAGAAAGAGATAATCCGGACAATCCTATCTGGAAAAACTGATTCTCTAAAACCAAATTCAGGTCAAGCTGTTGCTATTGGTGAACATCATATATGTATCGGGTTTCATGAGGATACAGGTTCGGATTATCGGGTGTGGGAGTGGCATGGTCATATCATGCTTTTTGATGAGGAAAATGGGTATTCACCTGAATACATTTATGGGAATTACTTTGAAAGAGTTAATGGTAAGCTTATGAAGAAGAAACAAGAGGAGAAAGAAGAAGAGGAGGAGAGTGAGAAAGAAGAAAAGGAGAGTGATGAGAAAGAGGAGAAGGTTGGGAATTTGGGGTTGAGAGAGTTGATATCATCAGGAGATTCGAATAACGAAGGTCGAATTCTTAGGAGGAATATGAATGCTGGCTCTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGAGGTTTGCTGTTTTACACCAAAGAAACATTTTGAGGTTTGCTGCGTATCTTCGCTTGGCTGCAATGGAGAGTTTTTACATTTCCTTTTTCCCAAGCTACTTGATGTTGTGTTCAAATAGCATTTTTGCAAATTGTGATCTTACATGGTCTGAAATATTGCATTTGCAAAGCAAAATAGGAACTCCTAGCAGATGAGAATAGCTCTTTATTTTTCTTTAATTCTCTATTAATCTTTTGAATTTTCTTTATTACAAGGGAGGTTGAAAATCTGTTACAGAATAAGCTACTCTTCTTTCATAAGCAAATGTTTTTGGAGCTTTTGTATGTAGAAAATGATTTTAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319310" ref_strand="+" ref_description="SGN-U319310        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative, similar to magnesium dependent soluble inorganic pyrophosphatase (Solanum tuberosum) GI:2706450; contains Pfam profile PF00719: inorganic pyrophosphatase | chr3:19891482-19894648 FORWARD | Aliases: F4P12.320(evalue: 6e-106, score=380) genbank/nr: gi|2706450|emb|CAA12415.1| magnesium dependent soluble inorganic pyrophosphatase [Solanum tuberosum] (evalue: 5e-112, score=407)">
      <seq>aattatgttttttttttttttaaagctttgagctgtttattaaagcttttgaaatggcagagtattaagagcgggaagaaggagaagaacgcgttttacaccttcattactcaactttctaggatctgagctgtgtgctttcaccgacggtcttctttttctccttcgtttgcttcagctagcaattatggttccacctatcgaaactcaagtcaagtcttcagtgtctcataagttctccattccaccacttaatgaaagaatactctcttctatgacacggagatcagttgcagctcatccttggcatgatctcgagataggacctaatgctccacagattttcaatgtggtgattgagatcagtaaggggagcaaggtgaagtatgaactagacaaaaaaactggactgatcaaggttgatcgtgttctttactcatcagttgtatacccccataactatgggttcatccctcgtacactctgtgatgacagtgaccctctggatgtcttagtcatcatgcaggaacctattcttccgggttgctttctcagggctaaagcaattggtcttatgcccatgattgatcagggagaaaaggacgacaagataattgctgtctgtgctgatgatcctgaatacaagcactatactgatatcaatgagctgccaccccatcgtttggctgagatacgtcgcttctttgaggattacaagaaaaatgagaacaaggaagttgctgttaatgactttcttccctccgacaaagcctttgaagcagtccagcattcccaggatctgtatgcagactacattgtggagagcctgaggagatgatagtctttccatcttcctcaagtcgtgaatgaccgtcaacattacatttctcatactaatataccatattttgtctaatactgcaaagcacacagttatataccatgttgcatgggcatataacatgctatatatatatatactatgcttgtatcatctactgtatgggaaattactcttccatacattacttgatgatgacgaaaaggaaacttcacgtttcccctggtcaatttttgtatgatttgaacttatctcttaattgtccgatttgtgaaatggattacaaacgaagttaagtttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="27084" stop="22667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26784" g_stop="26661" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26660" i_stop="26580" i_length="81">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26579" g_stop="26525" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="178" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26524" i_stop="25490" i_length="1035">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.372" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25489" g_stop="25345" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="323" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25344" i_stop="25240" i_length="105">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25239" g_stop="25211" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="352" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25210" i_stop="24776" i_length="435">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24775" g_stop="24710" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="418" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24709" i_stop="24627" i_length="83">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24626" g_stop="24519" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="526" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24518" i_stop="23940" i_length="579">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23939" g_stop="23874" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="592" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23873" i_stop="23803" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23802" g_stop="23682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="713" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="23681" i_stop="23528" i_length="154">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.497" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="23527" g_stop="23446" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="795" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="23445" i_stop="23318" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="23317" g_stop="22970" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="1143" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1144" polyA_stop="1154"/>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U319310" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1144</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26784" e_stop="26661"/>
          <exon e_start="26579" e_stop="26525"/>
          <exon e_start="25489" e_stop="25345"/>
          <exon e_start="25239" e_stop="25211"/>
          <exon e_start="24775" e_stop="24710"/>
          <exon e_start="24626" e_stop="24519"/>
          <exon e_start="23939" e_stop="23874"/>
          <exon e_start="23802" e_stop="23682"/>
          <exon e_start="23527" e_stop="23446"/>
          <exon e_start="23317" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGTTTTTTTTTTTTTTTAAAGCTTTGAGCTGTTTATTAAAGCTTTTGAAATGGCAGAGTATTAAGAGCGGGAAGAAGGAGAAGAACGCGTTTTACACCTTCATTACTCAACTTTCTAGGGTTTATTCTCTTTCTCTTTTTTTTTTCTTCTATAAATACTCTTTCTCGGTTTGCCGTTGTTCATACGCTTTGTTTTTGTAGATCTGAGCTGTGTGCTTTCACCGACGGTCTTCTTTTTCTCCTTCGTTTGCTTCAGGTATCGATTTTTTTTGGTTTAATGTGTTTTCTGTTCAATGTGCTAGTGATTCTTCGGAAAATGTGTTTGATCGTCTTCATTTTACTTGTTTTAGGCATTCATTTCTGTTTTTTTTTTTGAAGTTTTGTAGTAATGTTTTTAGGGATCGGTTACGTTTTCTGCAGTTTTTGATGATATGATTGGTTTTTATTTCGACGGAGTAATATTTTTGTAGTTAATGCTTTTCCTTGTTCATTTCCGTTTTTTTGGTTGAAAACGATTTTGTTTCTTTAGGTGAGGATCGCTTTCTTCACGGCATTTTTTTTCTCTACTTTTAACTGATATATAGTGTATTTTTTTTGTTTTCGCTCTGTTTTTTTTGTTCTTCGTGAATGTCCTTGCAGGAATGCGTTTAAGCACCTTCGTTTTAGTTCTTTTTGTTGTTTTTCGAAGTTCATTTCGTGTAGCTGTAGTGTTTCATGTTTTCTGCTTCGTTTGGTTCTGCACGTATTTCATGAATTCATTACTGTAAATATCGGGAGTGATTTTCGGCTTGTTTATAGATTACTGAGGAGTTGATCTTTTGGACTACATGGTCGTTATTGACTCTAGTTAACTGGAATTACTGGCAATTGTTTTGTTTACTTGTGAAGTCCTTACTTAGAGCTTTTGTTCAATTATATGTAGGCATCTACATAGCAGGTTTCTGATTTTGTAATTCCAGCAATCAGTATTGTATAGGTAGAGCTAAAACGAGATAGATCTGGCATTGCTGGTTGTTCGTATAGACAGCATGGCGAATTATAACCTCTATGTCTTAATCTCTGTCTGCAGGAAGATAATAATTTTCGATGTTATGGAAATATAAATCTGGTCTCTGGTACTTCCTGGCTGTTTAGGTTTTGTTTGTTTCATTCTGAGTCTGGGTCATTGGTGTAAAAATATACATATATTTCTTACAGATTGTTTTGTTTGATGCCTCTGTTCTGAAAGCTAACATTTGCTTTTCCCATGCCTATGGAGATTCTTACGTGCTACTAATACCTTGATGTCCAGCTAGCAATTATGGTTCCACCTATCGAAACTCAAGTCAAGTCTTCAGTGTCTCATAAGTTCTCCATTCCACCACTTAATGAAAGAATACTCTCTTCTATGACACGGAGATCAGTTGCAGCTCATCCTTGGCATGATCTCGAGATAGGTATTTTATAAATTCTGTAAAGTGAAACACCATTCCCCACAGTTGTGCAAAAAAAAATGACTCCTGGAATATTCTTCATGAGCTAAAATTTGTGTTTTGCCGCAGGACCTAATGCTCCACAGATTTTCAATGTGGTAAGATTCTTTAAAACATTCGAACTGATGTTTAATATCGTTGAACCTTCATATTGGTTTATATGAATAAGGCAGTTTATGCCTCCCATATACGCTGAAATATATTTACCTTAGCTGATAATTGGTATCAAGTCCAAAACATCAAAATTTAAATGAGCAAACATGATTGATCTTCTAGGTCGACACTCTAATTTCATGTTACATACCTTAGATCAGCTGCCAAAATCGAAGTCCTTGCTCTGTCTTTGTGCTAACTTTCTTAAGTTAAGTGGCGCTTTACTTCCTAATTGTAATCTGTACGATCTTCACCGAGTAAAGTGGATTTTTCACCTAGGTACCTTGGGACTTACAAGAGGTTCATATGTGGTTGAAGTTATTTATGTTATACTTGGTTAAGATCTTTTTGTATGTAAACCTACCTATTGGTTGGTGCAGGTGATTGAGATCAGTAAGGGGAGCAAGGTGAAGTATGAACTAGACAAAAAAACTGGACTGATCAAGGTATCAGCGGGTATATCTTGAAGCAAGTAAATTATGAAATTTTAGCTGAGTGACCTGAAACGCTGTGTCATTATTTATTCCAGGTTGATCGTGTTCTTTACTCATCAGTTGTATACCCCCATAACTATGGGTTCATCCCTCGTACACTCTGTGATGACAGTGACCCTCTGGATGTCTTAGTCATCATGCAGGTGAGCTGATAATCCTTTCCCATTGTCCTGATAAATAACACAACTTGTGGATATTAGCTGATAGTTGAACTGCAGCTAAGGGTCCAAGAACTTACCTATAACTTACATGTTTGTGTGTAAGCGAAGGATGGAGAAGATATAGTTTGGTTGTAACTTCCAAACTTATATCTACTACTACTTAAAAACGGTTCTGGACACAGAAAAGTTGATCTGGTCCTGGTGTTTGGTCTTATTATATGCATTTGTGATCTCAGTTATTGCTCTAAATTATGTGGACATTCTGTTACCCTGTATATAACATATTCACTTCTGTATTATGTCTTTTTATCTATATGCTATAAAACTGTTGATTTTTCTTAAGAAGCCAATCCTACAATAGTTTGCCAGTGCAGTGCATGGGTGTCAAGGATGTGGACAATTTAACCATTTGTGGCCTTTGCTATGCATATTTGACAGATTAAAGAAATTATTAGTATTGTGGCTTTAACCTCTATGAACTGTGCCTTTTTTTTTCTTCAAAAAAAGAGATGCCTATAAACAGTTATTTATTCTCTTGATTCTTACCATGCTAATTTACAGGAACCTATTCTTCCGGGTTGCTTTCTCAGGGCTAAAGCAATTGGTCTTATGCCCATGATTGATCAGGTACTTCTCTATGGTTAAAAGTAAATTTTGTGTTCCCAATCTTCCATGTATTAACTCTAGTCAGAACACAGGGAGAAAAGGACGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAATACAAGCACTATACTGATATCAATGAGCTGCCACCCCATCGTTTGGCTGAGATACGTCGCTTCTTTGAGGATTGTATCCTTTTCCAAAATCACAAATCTTAAGAGCAGCATGTATTTTAATTTCAGATGTTTATGACTCATCATTATTACGTTCATTTACTGTTTAGTGTGTGCAAAGCTTGAATAAGAACTTGAGTATATGGTTTGGTCCTTGACTAATGTATCAGACAAGAAAAATGAGAACAAGGAAGTTGCTGTTAATGACTTTCTTCCCTCCGACAAAGCCTTTGAAGCAGTCCAGCATTCCCAGTAAGTAACACCTTCCACCATTTCACACATAACCAGAAATTCAATTTTTCTCCCTTCTGCAGTATGTTATGTTAACGAGAATTCATATTATGCTCGTCTGCTTACGTATAATGTTCTTTTTTTCTCAGGGATCTGTATGCAGACTACATTGTGGAGAGCCTGAGGAGATGATAGTCTTTCCATCTTCCTCAAGTCGTGAATGACCGTCAACATTACATTTCTCATACTAATATACCATATTTTGTCTAATACTGCAAAGCACACAGTTATATACCATGTTGCATGGGCATATAACATGCTATATATATATATACTATGCTTGTATCATCTACTGTATGGGAAATTACTCTTCCATACATTACTTGATGATGACGAAAAGGAAACTTCACGTTTCCCCTGGTCAATTTTTGTATGATTTGAACTTATCTCTTAATTGTCCGATTTGTGAAATGGATTACAAACGAAGTTAAGTTTGT</genome_strand>
        <mrna_strand>AATTATG-TTTTTTTTTTTTTTAAAGCTTTGAGCTGTTTATTAAAGCTTTTGAAATGGCAGAGTATTAAGAGCGGGAAGAAGGAGAAGAACGCGTTTTACACCTTCATTACTCAACTTTCTAGG.................................................................................ATCTGAGCTGTGTGCTTTCACCGACGGTCTTCTTTTTCTCCTTCGTTTGCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAATTATGGTTCCACCTATCGAAACTCAAGTCAAGTCTTCAGTGTCTCATAAGTTCTCCATTCCACCACTTAATGAAAGAATACTCTCTTCTATGACACGGAGATCAGTTGCAGCTCATCCTTGGCATGATCTCGAGATAG.........................................................................................................GACCTAATGCTCCACAGATTTTCAATGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGATCAGTAAGGGGAGCAAGGTGAAGTATGAACTAGACAAAAAAACTGGACTGATCAAG...................................................................................GTTGATCGTGTTCTTTACTCATCAGTTGTATACCCCCATAACTATGGGTTCATCCCTCGTACACTCTGTGATGACAGTGACCCTCTGGATGTCTTAGTCATCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATTCTTCCGGGTTGCTTTCTCAGGGCTAAAGCAATTGGTCTTATGCCCATGATTGATCAG.......................................................................GGAGAAAAGGACGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAATACAAGCACTATACTGATATCAATGAGCTGCCACCCCATCGTTTGGCTGAGATACGTCGCTTCTTTGAGGATT..........................................................................................................................................................ACAAGAAAAATGAGAACAAGGAAGTTGCTGTTAATGACTTTCTTCCCTCCGACAAAGCCTTTGAAGCAGTCCAGCATTCCCA................................................................................................................................GGATCTGTATGCAGACTACATTGTGGAGAGCCTGAGGAGATGATAGTCTTTCCATCTTCCTCAAGTCGTGAATGACCGTCAACATTACATTTCTCATACTAATATACCATATTTTGTCTAATACTGCAAAGCACACAGTTATATACCATGTTGCATGGGCATATAACATGCTATATATATATATACTATGCTTGTATCATCTACTGTATGGGAAATTACTCTTCCATACATTACTTGATGATGACGAAAAGGAAACTTCACGTTTCCCCTGGTCAATTTTTGTATGATTTGAACTTATCTCTTAATTGTCCGATTTGTGAAATGGATTACAAACGAAGTTAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312493" ref_strand="+" ref_description="SGN-U312493        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: AT3G53610.1 | Symbol: None | Ras-related GTP-binding protein, putative, similar to Ras-related protein ARA-3 SP:P28186 from (Arabidopsis thaliana) | chr3:19887219-19889480 REVERSE | Aliases: F4P12.310 (evalue: 4e-92, score=335) genbank/nr: gi|18447921|dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum](evalue: 2e-95, score=352)">
      <seq>atcaacaacaatgtttacccttgtagccttgtcctgcaaaatccctactgctagatatatctttatttcttgagaagaaatatatgtttttattgaagtggaccaattgtgaacataatgatcttagcattaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctcctttctctctctttcatttttcatttttctccgatctcgggttggagtttcccttcatcattttctgagaaataatttctaatggccgctccacccgctagagctcgagctgattacgattacctcatcaaactccttttgatcggcgacagcggtgtgggtaagagttgccttcttttacgtttctcagatggctcctttacgaccagttttatcacaactattggtattgacttcaagataaggaccatagagcttgacagtaagcgcatcaaactgcaaatctgggatactgctggtcaggagcgattccgaacaattacaactgcttactaccgtggagccatgggtatattgctggtgtatgatgtaactgatgagtcatcttttaacaacatcaggaactggataagaaacattgaacagcatgcttccgacaatgtcaacaaaatactggtcggcaacaaggctgacatggatgaaagcaaaagggctgttcctacatccaagggccaagcacttgctgatgaatatggcattaaattctttgaaactagtgccaagacaaatatgaatgttgaggaggttttcttttccatagctcgggatataaaacaaaggcttgccgaatctgactcaaaggctgagcctcagaccatcaggataaatcaaccggaccagggagcaggatcttcacaaggcgctcaaaaatcagcttgctgtggttcttaaaatatcgattaacagcaaatgaagccaggatgatgggaaatacatccttaaaatgaccattttagtggaagggctgaaactaatatcttttttttattattataacattcttattgtatttctctctttacagctcttctcttccaatatctatttgtatttggtggcagctcttagtatttgcaaaaaaaattatcagtatatttgctcaccacttttttgacttatataaatgaagggacaaacctgccttctaatgttcttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="26440" stop="46497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29429" g_stop="29503" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29504" i_stop="29782" i_length="279">
            <donor d_prob="0.281" d_score="0.00"/>
            <acceptor a_prob="0.848" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29817" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="107" r_length="32" r_score="0.629"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29818" i_stop="31389" i_length="1572">
            <donor d_prob="0.618" d_score="0.00"/>
            <acceptor a_prob="0.624" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31390" g_stop="31422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="139" r_length="32" r_score="0.545"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31423" i_stop="31855" i_length="433">
            <donor d_prob="0.021" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31856" g_stop="31868" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="152" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31869" i_stop="32209" i_length="341">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32210" g_stop="32269" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="0.833"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32270" i_stop="32392" i_length="123">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32393" g_stop="32507" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="324" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32508" i_stop="34746" i_length="2239">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34747" g_stop="34819" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="397" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34820" i_stop="35418" i_length="599">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35419" g_stop="35519" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="498" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35520" i_stop="35676" i_length="157">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35677" g_stop="35742" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="564" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35743" i_stop="36085" i_length="343">
            <donor d_prob="0.082" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36086" g_stop="36183" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="662" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36184" i_stop="36280" i_length="97">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36281" g_stop="36343" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="725" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="36344" i_stop="36419" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="36420" g_stop="36512" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="818" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="36513" i_stop="36954" i_length="442">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="36955" g_stop="37308" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="1172" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="37309" i_stop="37564" i_length="256">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="37565" g_stop="37589" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1173" r_stop="1197" r_length="25" r_score="0.680"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U312493" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1204</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29429" e_stop="29503"/>
          <exon e_start="29783" e_stop="29817"/>
          <exon e_start="31390" e_stop="31422"/>
          <exon e_start="31856" e_stop="31868"/>
          <exon e_start="32210" e_stop="32269"/>
          <exon e_start="32393" e_stop="32507"/>
          <exon e_start="34747" e_stop="34819"/>
          <exon e_start="35419" e_stop="35519"/>
          <exon e_start="35677" e_stop="35742"/>
          <exon e_start="36086" e_stop="36183"/>
          <exon e_start="36281" e_stop="36343"/>
          <exon e_start="36420" e_stop="36512"/>
          <exon e_start="36955" e_stop="37308"/>
          <exon e_start="37565" e_stop="37589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCGGTTCCTTATAATATTTTATGTCACTATTATATATATTATTAATATTTATATTTTTTAATATTATGTATCTTGTCATTAATTAAGAGTTTTATATCATATATTGAGAAATATATACTTAAATACATGTATTTTTGCTATCAGATACACTAATATGGAGACAGGCGAATGAAATGGTGATGACGATGAACGAGATTCGCTATGTATTTCCAGATACACGTGAATCATATCAAACGCATATATGTATCTGATGTGATTCACATGCGTTTGGATATTAGATAAATAGGATATGGCGAGCGAAATGAGACACAATGCGATTTGTTATATATTCAGATACATGCAAGTCCACTTGAATACGATATCTAAAAAAATCACCTTATTTTGACTCTATATATCCTGATATACATGTATCTCGACGTATTTAAATGTATTTAAAAGCAATAAAATTTGATAAAAATACGTAATATTGCTACATTAAGTTGAATACTCAAAGTTTTCCTACTTGTTTTCCATGCATCATATTTCTCTCATTTTTATCCAACTTATTTTCTTAGATTTTAGACTAACCAAGATTTCTTTGTACCAAACATACTAATTTCTTTTTTTAAAGATTTATTTTCATTATCTAATGTAGTTATTAGAGTATTGATAAGTTAGGTCCCATACTCCCATTTGAAGATTTGACAACTTATAAACATGTTCTTACTTGTGGTACTATAAAATAATGAATTTGAGATCTATGCATTGATAATGTAAACAATATATTGTTATCTATACGTAACTACAAACTAGATTCATATTTATTTTTGAAATAATTGAAGTTACGTATCAGCAATAACACGTGTATCAAATACATTCTACACACACAAAGTTATAATGTATATCTTAGAGGTGGAATGATGTATCAGAGTATTAAGAGTGAGGATGAAAAAATGGAACTTTCGTAATTAATCCAGATGATACCGATTTTAAAGATTATGTCATCTTAAATTATGTAATTACGTAAATTTCCCTAACTCAGTCCCTTGTCTAAGATAAGATGAGCTTTCCTGGCCCAAGCTCCACTTACTGTGGGCCTTAGTCCATGTTTTTAATGGATATGTAATGTCTATAGAAGGGTGATTTGGGCCTTATGGATTTGTCTTCTTTGAACGACATTTCTTCGTGAGATTTATATCGTTGTAATTTTATAGTTGATGTCCAAAAAGTATAATAAACGTACTACATAGACTTGTACACTGTGTTCGTAGAATAGAAAAATTATTTTTAATAACTCTCGACTCAAGATAATTGTTTTAGTAAAGTAACATGAATAATTAGTTTGATAAAGAAAGGGTAAAAGAATATATGATTATGCTAAAACAAAATAGATACATATTGTTTTATAACTCTCATGGTTTCTTATAGCACTTTCAATAAATGTCCATATGATGGAAACAAATTAGACATAAGAGGGATTTCAATCAAAACATTTTAAAATTTTCACAAGAATTGTTTATTTTTTTCAACTTCTAACTAATATATAAATACTTTTTATGATAATATATTTTTTTGAACCTAAAAAAATATGTAGTCGTACAATCTTGTGACTCTGCGCTATAGTTTGTGCGCACTTGGTAAATCTTTCAATTGTGTAATAGCTTACAAATCACACAGAAAATATAAACCGCACTAGACAAATCTTATGCAACAAATTAAATTTAGAAGACATTAAAAAGGATCAATCATTTACGCAAATAACCATCCAAATTAACTGAACCAATCCAAACTAGGGCAATTCAAATCAATAAAAAGTTATTGATTTATATTAGTATTGGATTATTAGTTTAGCGATTTTGATAATAGTTTTGACTTTTTTTGTTATCGGGTTATCGATTTTTAACAGTTTGAATCTTAACGGGTTAACCGATAACCGATAGTAAATTAAGTAATTATACTTATACCATTTTGTATATTAAGTCCTCGAGTTAGAGTTTGATTTCCTACTTTTATTTTTGGTTGTCTCAAACACTTGGTTATTCTACAATGTAAAAGTGTTTTCTTTCGAATAAGATGTAACTTGTAACTCATGTTCATGGTTTATCTGGTTCGCCACCTTGTTTCTAAATGATTTTCATTGTTTTTCTTTTGTGTCAAATCTTAACGGTTAAACCGATACCGAACTGATAACGATAAAAAAAATGATAAACTAATAACCAATAAGCCAATATCTTAATGATTTTATAATAATTTAGCATCTCTACGAATCGATAATCGATAATCCAACTCAGTAAACTTTAAAATCAAACCAAATCAACTTTTTTATACGACCTAATTATTGAGAGGTGATAAAGAAGTCAACATTTGAATTGGAAAACAAAAAAGGTGACATTAACCACCTAATAAAATAAGTAGTTTTGTTATAAATTTATGCTTCTTCTAACTTATTTTAATCTTCTTTTCTTTTTTTCAAGTCATACTCATCACAAACAATTAAATTTTTTCAATCAAATCATAATATTTTAAAATTACCATAACTTTTTTTAAAATAATTAAATATTTAAATTTATTTAAGACTCGACCAATCCGACCCATTCTAAATAAGTTGATCGTACAAAAGAGAAGTAAATAAAAATCAACGGCCGACCGGTGCCGACGTGACTAACGTTGCAAGGACGCTTTCCCTCCTATAATATTTATTTATTTACAGTCTCTCTATTTATTAGATCTCAAACATATTTTCATATCTTTCTCTCTCTTTCATTTTTCATTTTTCTCCGATCTCGGTACGTAATTGTATGTTTATATGATTATAATTATGTATAAATCTTCGTATATATGTTTATTCGAATTCGATTTGATTTGATTTTCAGGTTTTAAGGTGATTTTTGTTTTGTTTGTATATCTAGGGTTGGAGTTTCCCTTCATCATTTTCTGAGAAATAATTTCTAATGGCCGCTCCACCCGCTAGAGCTCGAGCTGATTACGATTACCTCATCAAACTCCTTTTGATCGGCGACAGCGGTAAGTTTTTTTTTTTTTTTTTTGACCTTGACGTTGTGTGTTTGAGTTGTGGAAACTAGATTTTTGTAGAAATGTAGTTGATTGATTAAAACTTGTAGCGTATATAGCGAAAGTTTAGTGCATGAAACAGATTTTTTTTTTTTTAAATTATGTATATTGACCTTGAGGTTATGTGTTTGAGTTGTGGAAACTAAATGTAGAAATGTAGTTGATTGATTAAAACTTGTGGAGTATATAGCGAAAGTTTAGTGCGTGAAACAAACTTTTTGTAGTTTTTCGATGTGTAATTTTATTATTGATCAAATTTTGTTGAGTTATAGGATATGAGATGTTTGGGATAGGGTTAATGATGTGTAGCCCTGTGATCTAGGTGTAGAACTGTGTTTTTTTTGTTTAGTTTTCTTTAATGGCTTATGCGTCAGTTCTAAGTCGCGGTTTTTTGTATATATGTAATAACAAAAATGTGTGCAGTGATGCTAGAGAACATTTTTGTTTGCTTCTTTGAGACATGAAGTGCAATTAGAGCTTGAAGAACTTATTGTTGACTTTGTTAGTATTGTTCTTTCGGTTGATACTATGCTTCACTTGCTGGTATGTTTGTGTAACTAGGAAGGAAAATATTAATGGATGCTTATTAAGTTTGTTTGAGTGGGTTAGAGTCTAACCATTGGTTGGAGAATGGATTGGCGGTTTGCTTATATGGATTTGCGGAATCCTCTCATCATGAGATAACTTTTGGGGCTATATCATTATGCGGAGTCAGAGCCATGTCCATCCTTGTTTGGGCTCCCGGTCCATGTCCTGTTGGGACTTGCGACTGAACGTGACTGCCAGGGGGTGTTAGAATAGGTTAGATCCCACATTAGTCGGGGAATAGATTGATGGTTTTCTTATATGTACATGGGCAATTTTTAGAGCTAGCTTTTCGGGTAGAGTCAGGTCCACGTGCCATATATATAAAAATTGACTTGATGCTTATTAGGTCAGTTTTCTGGTTGTTTAAGTCATTTTCGACTTTCCTATCTTTTATTTTTCCTATTAAGGTCTATCCATTTTCTTGTCTGATCTTTTTTCTCTTAATAATTTTATACATTTCTTGTTATGCTTCTGTTTCATTTACGTTTTGTTAAATGATAGAGAGAAAAATTGGTAAAAGAAAAATACTACATTAACCAAATTAATTATCTGTTGGAATTTTATTTGATGCATGTATAAACATGTCTGCGAACTAGTTATATTGGTTTCGAAATCTGGTAGATATAAGTTTCAGACTATGTTCTTGCACCAACAATAGATGCCTCCCATCCCTCTCTTTGTGCATAATGTAGATACAATATTGGACATGATCGGGGATTTGTAGAACATGACACCCAAGGGTGTGATCTAGTGGTCAATGAAGTGAGATGAAAATATGAAGTTCTAGAGTAAAAGCTTACTCTTTAAATGGCCCTGGAGATTGACAATAAAAGTGACCTGGAAAGTTATTGTCTCATGAAATATGGGAATAAAGGTTCACCATTCACTGGATTCCAAGGTGTTCACATATGTCCAACAGAATTACTATTTGGAAGCAACATTTATAGATAGCGGGAAAATCTTAGTCATTTCCCAAATTAAAGGTGGGTGAGAGAAATCACATAACATTTTGGCTAGGTCAGTGGATAAGAAGCTTTTGTATTTTGTAGCCTCAAGCCCTCAACTCAGTTTCTGTTGTTTTTAGTGCTTGTAAGTTGTAACATTTACTTTCTGTCTCAAAAAAAAAGAAAGTTGTAACATTTACTTTGATAATAAGATAAGTCAGTTAAAAAGGATTTCTAAATAAGTCAGTGCCTGCAAAATTTAATTATATGTTGTATAAGAATCTGCGAGATTTTGCACTAGTTGTTAGAATCTAGGAATACTTTTTAGGTAGGCTGTAGCTGAATTGTTGAAAACAGATGGTGTCAATCATTGTCCCAGCATGCTCAGCTGTTTGAAGATGGACATATAGAAAAAATTGGCTAGATTTTCAGCGCTATTCATTTGCTTTCACTTTGAAATATTCTCGCAGCACGATATCAAGAACATTGCCATCATTATGCATATCAGTTACCTTCCAAATTATGCTGAAGATCAGTAGCTGTTTGGTGTTTTTTGTTTCAACAGATTGTTCGTTTTTTTGTGCTAATATGTTGAAATTTCCTATTAATAGTTTAGTACTTCTGGAAGATGACATAATAGATTCTTTTTGAACTTTCAGGTGTGGGTAAGAGTTGCCTTCTTTTACGTTTCTCAGATGGCTCCTTTACGACCAGTTTTATCACAACTATTGGGTAATCATCTTCTACATTTTTAGAACAACATTGTCGTTACCTCATCATCTTCTTCTTCTTTGGTGTTTTTCTTAAAGCACTTGTAACTCAAATGTTATAAAAGGATAGATGAACTATGAATTTGATAAGATAATAAATTCTTATGGAAAAGTAGCACAAACCTCTTACTTGAGTTTACATTATGAAAATGTGAACGACACGCTGCGACTACCACTACGACCACATGCTCTTGTATTGCTCTTTTGTTTTTTATCTTAGCACTTGTACCTGAAAGGTGATCAAGAAATACAAACCTTTTCTTATGATAAAGATAACATAAGATGCACAAACATAAATTGATCTAAATGAAGAAAATGTGTTGAGCAGTTCATAAGAAAGGTATCTCGTTTTACCACTTACCTCTTATAAAAAAGGTTTCTTGTTTTATCAAATAAGAAGGCCAGATTTCCTCTTGACTAGGAATGTAGATTATGAAAGTTGACCACAGTGGTTTCAAGAGATAGTAAAAACATGGATGGATTGTCACACAAACAAATTATTGTTTTCCTATGTATTTATTTTTCGGGAGACCTATTCTGATGCAAAGTCTTCTTTCACAGTATTGACTTCAAGATAAGGACCATAGAGCTTGACAGTAAGCGCATCAAACTGCAAATCTGGGATACTGCTGGTCAGGAGCGATTCCGAACAATTACAACTGGTAAGCTTGTCGGTGAAACATGCGGTTCTTCATTTCTTCTTGCTAATTTATCATTTGATTGTTCTTTTGGTCGAACATTGACCAAGTCAGTACTCTGTTCTGCTGCATTAATATGTCAACTTCACATTTTACTAATTTTATTGCCTTCTTTTTGCAGCTTACTACCGTGGAGCCATGGGTATATTGCTGGTGTATGATGTAACTGATGAGTCATCTTTTAACAGTAAGTTCTCTTGTTACACTGGGGGAGCGGAGTTTTAACTTTTTGTTATGCCAATTTTTAGTGGTTCCTTTTACGTAGTGGATGATTTTGTAAGCTCTGTGGGGTTGACTTTTAGGAGTATTACCACATGTTTGAGGTCTTGACAGGAAATCTCCCTCATTAAATCCCTTCTAAACAGGCATCTGCCAACAAAACTATATGTTCTACTTCTATGACTTCTGCCCCTCTTTATAATGAAGCATGGCTTTAAAATTATGGAGAAGCTAAATTCATTTTTCTCATACGCTAGAATAATGTACACTTCTGTTGGTCAGGTCAAAACTAACTTTATGTACATGTTTAGACATCAGGAACTGGATAAGAAACATTGAACAGCATGCCTCCGACAATGTCAACAAAATACTGGTCGGCAACAAGGCTGACATGGATGAAAGCAAAAGGGTTCTCTCTCCTCTCTAGCTCCTTCAATCTGCTGATCTTTGTATGTTGTTGTATACGTGCCATTGTGTAACTGAGTTGTGATACACCTTTTCTCTAGGCTGTTCCTACATCCAAGGGCCAAGCACTTGCTGATGAATATGGCATTAAATTCTTTGAAACTGTAAGTAGAACTGTTTGCCAGCATTGTAACTATTTGCAATTGCAATTCTCTTAAATCCTAGTTATATTTAATGCAGAGTGCCAAGACAAATATGAATGTTGAGGAGGTTTTCTTTTCCATAGCTCGGGATATAAAACAAAGGCTTGCCGAATCTGACTCAAAGGCTGAGGTCTTATTTTCCAAACCAATTTCATTTAAAATGTGCATACTTTGTGCTGGTTGACAAGTTTGAATGCTGAAATTAAGTAGAAACCAGAGATGATTGACATTTCTATTGATTTAACTTTTGACAAGACAAAGTTTAAGGGTGAAATGTTGGTGTATGAAAACGTTGGGCAAAGATCCTTCCATTCTAAAAAAGTAGACGAAAGGTGGAAGCGCACACTAATTTGTTAAATTTCTGTCTGTTCCTGTTTCCCAAATACAAAATAACTTCCTTCCAAGTTCCTATAATTGTGCATGATTCAGTCTTTGTTGCATCCCATCCTCCTTTTTAACTTTGAATCTTTCGTTTCTCCAAATACACTCTACATCAGCACGACGTTATCTTGTTCCATTTCCTAGACATGGAATATTTCGCGGACTGACTCGTGCATTCATGAATTTTGCAGCCTCAGACCATCAGGATAAATCAACCGGACCAGGGAGCAGGATCTTCACAAGGCGCTCAAAAATCAGCTTGCTGTGGTTCTTAAAATATCGATTAACAGCAAATGAAGCCAGGATGATGGGAAATACATCCTTAAAATGACCATTTTAGTGGAAGGGCTGAAACTAATATCTTTTTTTTATTATTATAACATTCTTATTGTATTTCTCTCTTTACAGCTCTTCTCTTCCAATATCTATTTGTATTTGGTGGCAGCTCTTAGTATTTGCAAAAAAAATTATCAGTATATTTGCTCACCACTTTTTTGACTTATATAAATGAAGGGACAAACCTGCCTTCTAATGTTCTTGTACAAACTTTTGGAGGGGTTTTTGTGTGGGCATTTGCATTTTAATATTGTCCTTAGGGGTTGCCATTTTATCAATCATCCTATGAAATTGAGCACAATTTACAAAGAATTGTTTTCTGATCATTTTGTAGAGGACTCTTTAATTCTCACTTTTCACATGATATGTTTAAGATCGTAATATTTAAAAGTACTTTAGTATATTTCTATGTATTTTTAGTTTAAAAATACGAGATTCAAAAATTTCTGTACATTACCTTTGTCTAAAAGTCAAAATCAAGTAAACAAAA</genome_strand>
        <mrna_strand>ATCAACAACAATGTTTACCCTTGTAGCCTTGTCCTGCAAAATCCCTACTGCTAGATATATCTTTATTTCTTGAGA.......................................................................................................................................................................................................................................................................................AGAAATA-TATGTTTTTATTGAAGTG-GAC-CAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAA-CATAATGATCTTAGCATTAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................AACTCGAGACTA-GTTC-T-CCTTTCTCTCTCTTTCATTTTTCATTTTTCTCCGATCTCG...........................................................................................................................GGTTGGAGTTTCCCTTCATCATTTTCTGAGAAATAATTTCTAATGGCCGCTCCACCCGCTAGAGCTCGAGCTGATTACGATTACCTCATCAAACTCCTTTTGATCGGCGACAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGGTAAGAGTTGCCTTCTTTTACGTTTCTCAGATGGCTCCTTTACGACCAGTTTTATCACAACTATTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGACTTCAAGATAAGGACCATAGAGCTTGACAGTAAGCGCATCAAACTGCAAATCTGGGATACTGCTGGTCAGGAGCGATTCCGAACAATTACAACTG.............................................................................................................................................................CTTACTACCGTGGAGCCATGGGTATATTGCTGGTGTATGATGTAACTGATGAGTCATCTTTTAACA.......................................................................................................................................................................................................................................................................................................................................................ACATCAGGAACTGGATAAGAAACATTGAACAGCATGCTTCCGACAATGTCAACAAAATACTGGTCGGCAACAAGGCTGACATGGATGAAAGCAAAAGG.................................................................................................GCTGTTCCTACATCCAAGGGCCAAGCACTTGCTGATGAATATGGCATTAAATTCTTTGAAACT............................................................................AGTGCCAAGACAAATATGAATGTTGAGGAGGTTTTCTTTTCCATAGCTCGGGATATAAAACAAAGGCTTGCCGAATCTGACTCAAAGGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAGACCATCAGGATAAATCAACCGGACCAGGGAGCAGGATCTTCACAAGGCGCTCAAAAATCAGCTTGCTGTGGTTCTTAAAATATCGATTAACAGCAAATGAAGCCAGGATGATGGGAAATACATCCTTAAAATGACCATTTTAGTGGAAGGGCTGAAACTAATATCTTTTTTTTATTATTATAACATTCTTATTGTATTTCTCTCTTTACAGCTCTTCTCTTCCAATATCTATTTGTATTTGGTGGCAGCTCTTAGTATTTGCAAAAAAAATTATCAGTATATTTGCTCACCACTTTTTTGACTTATATAAATGAAGGGACAAACCTGCCTTCTAATGTTCTTGTAAAA................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343568" ref_strand="+" ref_description="SGN-U343568        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>tcagacgactgtcataaagaggaatccatatgcatgaaacttctatggttatgtaaatgacagattgacaaccaaggtgcgtgggttgcctccttaaagaaactgtgttttctcttttgttattggtcctcatagttgatcactctataattgcgttgatccttggtaataattcttgtcaaatagttatggctgtaaattatatctttcctttggttctaaattttgatgtaaattagtacataagtttttgcatgccggttaattcgatgagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="55728" stop="32213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55428" g_stop="55393" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55392" i_stop="50294" i_length="5099">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50293" g_stop="50055" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="275" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50054" i_stop="49732" i_length="323">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49731" g_stop="49718" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="289" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49717" i_stop="49574" i_length="144">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49573" g_stop="49554" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="309" r_length="20" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U343568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55428" e_stop="55393"/>
          <exon e_start="50293" e_stop="50055"/>
          <exon e_start="49731" e_stop="49718"/>
          <exon e_start="49573" e_stop="49554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACGACTGTCATAAAGAGGAATCCATATGCATGGTATGATGCAAAAACTTGTCTACATCTTCATACCGTATAATAGAAGTATGTACTCTTTATTACTTTGTGGTCCTATAAATAATGGCTGTCCAGAATGGTTTTTTTTGGGACGCCATTGACAGGAACTACAGGAAGAATTCATGATACTAATGCTTCACAACGTGTATTAACTCTCCTGAAACCTGTATATTAAAGCCAGAACAAGCTCATTCATACATTACGAACTTAAAGAGTTCAGAGAGAAGTTTCACCAAATTGATTTGTCATGTCCACGGAAGCTATAAATTTTGTGGGGAAAGTTGGAAGTGGTTCCAAGGCAGTGACTGCGAAGGAGACATACCGGCAGTAAGATTTTCACCTAATTGGAAGTGGTTGAGTCATTAGAGATATACAATTTGTTGAAAAGAGACTATAACATCTGTTAAGTGCTTAAAATGCTAACTTTAAACTACTAAGTCGACAATGCTTATGAAAGTGATTAAAGACATTTGTGATAGATGGGATGCTTATGATTTTAGTTTCTTAGTTGGAAAAATAGACAAAGATCTCTGCATATGTTTCAGGTTCACGTTTTCTGCATGCATCAACATTTATTATATCTTCACCCTAACCATATTTGAAAAGCAAGGAAAATAAGAAAATTATACTTGTCTTAGAAAGAAAAAGTTGTGCAGAGAAAGAGAGAAGAAAACAAAAAAAATACGTAAGGTTAGCTAGAGACATGTTCAATATAAATGGTGTTTCCTCCGTTATAAAAAATAAATAAAAAATTGGTACTTCATTTCAATTCAAATGACATAGTATGAATCAAGATAAAATTTAACTTAAAATCGGAGATGTTTGAAACTTGTGTTGCTATAAAAGCTTTTCATTAATGGCAAAATGAGAAGTTAACTGCTAGATATTTCCAAATATAAAAATGTGTCATTCTTTTCCTAACATATATGGATTAACAAGGAAATACTGTCACATAAGATTTTATCTGAAGGAGTAGATCTGTCCTTTAAAAAAAAAAAATTGTCAAAACTGTAGTACACCACTACATAGATAGCATGCTTAGGCTAAGACCACATAAACTATCAATTATAAAGAAGTACACTTAGAGATAGCAAAACTTTTGAACTTAGCGGAAAGAATCAATTAAGCTAGGACAAAGTAAACAAAGGATAGCTGGTGACGAGATAAGGATAAGCGCATAAATGTGGAACATAAAGGTTTAGGCAAGTGCATGTACACATTGAAGTATAAAATAAAAATACCTTTTCTTTTCGTATTGAATGATACTCCTTCCTTCCATTTATTTGACATGGAATTTGAAAATGCTAGTTTAATGTGCATATCATATTGGAAGGAGTTAAAGAAAATGATAAAATAGAAGTTGTGAAGTAATTTTAATGAAGCGAAATGAGTATTGAGGATTATATAGTTGACCCCAATAGGTTGGTTTGAAGTGTAATAGTTGTTTCTTTGTAAGTCAAAGATTTAGTTTTATAGGGGAGGTATGACATTAAATTTATGGTACATTAGTTCATTTATTTGAAATCTTCAATTTGGTGAATATGTTATGGGTTATCAGATATTAGAACTGAGTCAGTTTTTTGAGACGTCCAAACATGAATGTTTGTAGCATATAATATATTGACTAGTAATATACTACTCATTTTTGTAATGATAAAAGTGAGACTAAGATTACCTGTTAGTGCTTGAAATATGGCGGCTGCTAAATGGTGGAAGCTTCAATCTTCAAATTGCTATGTTCTGTTTCAAGGGTACTTACCAATTGTAAAAAAAAAAAATTGTTTCAAGTGAGTATCAATAGTATGCCTTTGAATTTTGAATAATTCCTCATTTCAGCTTGCTCAACAATTTAATACATAATTTGATGATCTATGTGCTCGTTCCAGTAACAAACAGTGATATCTGGAAGTGATGAAATGACTTTCTCTTGTTAAGCATGTCAAATACTAGTTTAGTTTCATGGCTCTCTAGTAACCTGAAGGTAAAAAAATGGTAAGGAGCCGAAATTAAGCAAGTTTCAGACTTTATCTTAGCATCTCTGTTGCAGTCATTTTAGTCTGACCCATACAGAGGAATAACTGTTAAGATTAACTGGTTCAAACTTTTCAAACACTGATCTTTTAACACAGGAAATATTTCCAGATAGAACTTTAGATTGTAGATCTGAAGTTAAAGAACCAACTTATCCACATGTCTGGGCATGATTATTGTTGTTACTATAATTTATTATACATGGTTTAATATCGATTAAAAACCAAAAGAAAAGGCCTATAGGCTTAACATAGTTTAGTCATTCTATAGTTCAGAAAGAAGTTCCCAAAAATGGTGGTTTAACTGGCTTAAATTTGGCCACACGCTGTAAACCATCTTTAACTAATAATTACTAATTCAAGATGCAGCTGAAGAGGAGCTCATTTCTTAGATGAAGAGGCTGCTCTATAGCCAGACCTCCTTTTGGAATTTGGAAGACAAAGCCTCAAATAGAAAATCATTATATGCCTTCATCTTCGGTAGCAGTTGTTCCTTTCGATGAATTGATGTGGGTAACTGTCTGACTAAAAGGTTCCTTGTCAATTTTGGTTTCATGTGTTGGTATTGCTTGTTCATCGATTGATGGAGATTTGTGATCCTTACTTTTACCCCATAGGACAATGTAAAGTCCAACAACAATCACAACAGCACCGAGTACCCTGCAAAAGTCATTACATTAGAGTTTGGTGTTGGTTGTAACTTATAAGAGCTTTAGCGTTATTAGTATTACCTTCCCAGGTTCAGTTGTTCACGTAGAATAATTGTACTCAATACAGCTACAATAACCATGCTTAATGGATTGAAAGCTGTGACAAAAACAGGGCCCCTGTCTTTCATTATGACTCCTTGAATATAATACGCGAGTCCTGAACAGAATATTCCCTGGATTGTGACATGACAAGTGAGAAGCTTTTTTTTTTTTTTTAAATTGACAAGTGAGAAGCTTTTAATTGGCTTAAATTTATGAGTTATTGGTGAAACTATGCTTCTAGATTTCCCCCCCCCCCCCCTCACTTCCCTCATGTTGCAGAAGTAAGTTGCTTGCTACGTTGGTTTGGGAACATTGATCTTAAAATTAATGTCTTTAAATTTGGAGAAGCATTGGCTGCTTTCAGATGACATGTTCTGTCACCCATACTAGTACAGAACTGGGCAATTTGGTGCATATGTTGGAATAACATCTAAAGAATAAATACTTCTAAAACTCTTTGTATGCTCGTGTTCTAAGAAAATTTAACCACATCAGGTTTAGTGCATAAGTTTTTTTTTAAATCAAGTAAAAGATTTCAATTATAATAACAAGGCCATATGGCTGTATACAAGAGGCATGCAAAAAGGGGAGATCTACAAAATATGGTTCACTTACACTGTATACAGCTGCAAGAAACTTAGAGTCCCAGTTTATGGCCCACACTGCAGGTTTTCCTCTCTCCATTACCATTGCTACTATGGCTCCCTCAGTTGTTCCCAACAAGCATATCCAAGCAGTGAGCGAGAGCTCAGCGGGATAAGTCCGCAGTGTGATTGCCTGGGAGTAGGGTGCTAGAGTCAGATATAATGCTTGTTAGTTGTAATTACTTATTTCTTCTAACTAAGTTCTGTCTTTACCTGCAAAATCATGAATGCAGCCCAACTGAAGCACCCAATTGTTATCATGATGGAACCTTTGATAGCATGGCTTAGATTTAACCCACCACTTTGAGAGTTATGACCGGCATTTCCTGTTGTCCAAAATAGTTCAACTATTGGACCTCGTACCAGTGTCATGATCATGGCTCCTGCCACTGTGGCAACAGTCCCAACTATTTTGGCTTGGCTGCGGATGCTTGTAAGCTTCACCTTCTCAAGCCTAGAATAAACAATATATGTGCCAAAAGAATAACATCATGATTTGGGAATTGTCCTTTTGTCAAAAAATCCATGTTGGGAATTTCTTATTAATTCATATTTGCTAGTGATCATGTGTATTTATATCTGTACAATGACACAAAACATATTATTTACCTGAATATCCAGGCCATTATAAAAGTAATGGCAGGAAGAATGTTGCACATTGCAGCTGCAAACGTTGCTGTTGTGTATTTCAGGCCAATAGAGTAGAGATTCTGGTCGATGACAGGCCTGTTGGTCAAGAGAAACATGCTTATGTTAGATACTGATTGCATGGAGAAAAAGTGAATTTGAGTGTTTTAAGACTTACTCCAGTAAGCTAAGAAGTACCAACTTAGCAAATATTGAGGGGGTCATCTTTGGTCTTACTTTCCTGTTAAGAAATATTCAGTTTGCCATCATTTTCTCTAGGGGAAATTATAAGAAACACTTTTTGTATGTCTTTCTTCCACTGAGAAATAGACTAGAGTTGATGTTGCAAACACGTTAATTGAAAACGGAGAGGGAGGGAGAGACATACTTGTCTAGAATTATTGCAAAAGGAGCAATAACCAAAGTGGCAACTGCATGGCGGTACACAACAAATACATAGTTACTCATTCCTTCATTCAAGGCCACTTTGGTGAGAATATCCATGCCTGCTAGCCCAAATTGGAGAAAAATGACTGCAAGAAAGGGTTTGGCTCTGTTGTAGAGTTCACGTACTGCCTCCATTGTGTACTTTCAACAAAGCTCAACCTCTTTGAAAGCACTACTATTGCAAGGTCACAAGTGCAGCATAAGTAACTGCTGCTTTTCTGTATATATAGACAAGTCCTTCACACTATTTTCGTTCTCTTTACCCATTATGTGATCAGCAGATGAGGACAAAATCTGTTGGATTTCATTTGTGTATATAATTTGTTTAATTAATTACTCGGTAAGCCTTCCACTTTTTAAAATGAAGTGGCCTAGTCATCCGGACCTACTCATCACTTGCTTCTAGGAAAAGTAAACTGGGAGTGAGTACACTTTTATTTTGTTGCAACTTTCTGTAAGTTGTCTGCTTTGGATGAGCTCAAATGTTCTTGAATTGATTTAATACTTCCTTGTATATCTTAATATTTGTATATTAAAGTTCCCTGTCTATGCTCATACTCATGGATATTAATTTCTTGCAGAAACTTCTATGGTTATGTAAATGACAGATTGACAACCAAGGTGCGTGGGTTGCCTCCTTAAAGAAACTGTGTTTTCTCTTTTGTTATTGGTCCTCATAGTTGATCACTCTATAATTGCGTTGATCCTTGGTAATAATTCTTGTCAAATAGTTATGGCTGTAAATTATATCTTTCCTTTGGTTCTAAATTTTGATGTAAATTAGTACATAAGTTTTTGCATGCCGGTTAATTCGATGAGAATCTGTGTGTTAGAAAATTCCCTAGCTAAGTGGTGTGAGTTGGCAAGTTTTATAGCTAGACCATGAGTATCCTACTGCTCTTTCCGTTGGCATTGCACCAAACTTGCCACTTCTGAATTGAATATTCTTGTGGGTTTTAAAGTATTTTAAAGTTTGATACGTTGCTGTGGGCAAAAATTTTGTTCCAAATGCCCAGGTTAGGCACATGAATATTATGAGGTACATCATCTTAAAGTTAAAAACGGTTCCATTAAATATTCACAGCCCACCTTGTCTTATTTAAAATTAGTGTTGTGTTTGATGCATCTATAATGATCTCTTAGAAAACATAATCAATGTGGTTAGACCAATCACATTGCCTATATCTTTTGCATAAAAAAGCATAGTAGGTTAAGTGATTACGTGCCAAATTGCCAACTTTTTCTATGTTGCATGCTGTGTTGGTAACCTTTTCCATATTATGATTTTATATTATGTATAGAATGATTACAGGGAATCAAA</genome_strand>
        <mrna_strand>TCAGACGACTGTCATAAAGAGGAATCCATATGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCTATGGTTATGTAAATGACAGATTGACAACCAAGGTGCGTGGGTTGCCTCCTTAAAGAAACTGTGTTTTCTCTTTTGTTATTGGTCCTCATAGTTGATCACTCTATAATTGCGTTGATCCTTGGTAATAATTCTTGTCAAATAGTTATGGCTGTAAATTATATCTTTCCTTTGGTTCTAAATTTTGATGTAAATTAGTACATAAGTTTTTGCATGCCGGTTAATTCGATGAGA...................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321884" ref_strand="+" ref_description="SGN-U321884        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) | chr2:15733527-15736176 REVERSE | Aliases: F3G5.25, F3G5_25(evalue: 6e-132, score=468) genbank/nr: Protein(evalue: 3e-136, score=488)">
      <seq>gtgctttcaaagaggttgagctttgttgaaagtacacaatggaggcagtacgtgaactctacaacagagccaaaccctttcttgcagtcatttttctccaatttgggctagcaggcatggatattctcaccaaagtggccttgaatgaaggaatgagtaactatgtatttgttgtgtaccgccatgcagttgccactttggttattgctccttttgcaataattctagacaagaaagtaagaccaaagatgaccccctcaatatttgctaagttggtacttcttagcttactggagcctgtcatcgaccagaatctctactctattggcctgaaatacacaacagcaacgtttgcagctgcaatgtgcaacattcttcctgccattacttttataatggcctggatattcaggcttgagaaggtgaagcttacaagcatccgcagccaagccaaaatagttgggactgttgccacagtggcaggagccatgatcatgacactggtacgaggtccaatagttgaactattttggacaacaggaaatgccggtcataactctcaaagtggtgggttaaatctaagccatgctatcaaaggttccatcatgataacaattgggtgcttcagttgggctgcattcatgattttgcaggcaatcacactgcggacttatcccgctgagctctcgctcactgcttggatatgcttgttgggaacaactgagggagccatagtagcaatggtaatggagagaggaaaacctgcagtgtgggccataaactgggactctaagtttcttgcagctgtatacagtggaatattctgttcaggactcgcgtattatattcaaggagtcataatgaaagacaggggccctgtttttgtcacagctttcaatccattaagcatggttattgtagctgtattgagtacaattattctacgtgaacaactgaacctgggaagggtactcggtgctgttgtgattgttgttggactttacattgtcctatggggtaaaagtaaggatcacaaatctccatcaatcgatgaacaagcaataccaacacatgaaaccaaaattgacaaggaaccttttagtcagacagttacccacatcaattcatcgaaaggaacaactgctaccgaagatgaaggcatataatgattttctatttgaggctttgtcttccaaattccaaaaggaggtctggctatagagcagcctcttcatctaagaaatgagctcctcttcagctgcatcttgaattagtaattattagttaaagatggtttacagcgtgtggccaaatttaagccagttaaaccaccatttttgggaacttctttctgaactatagaatgactaaactatgttaagcctataggccttttcttttggtttttaatcgatattaaaccatgtataataaattatagtaacaacaataatcatgcccagacatgtggataagttggttctttaacttcagatctacaatctaaagttctatctggaaaaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="50402" stop="67269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50702" g_stop="50933" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50934" i_stop="51080" i_length="147">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.314" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51081" g_stop="51143" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="295" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51144" i_stop="51222" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51223" g_stop="51339" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="412" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51340" i_stop="51494" i_length="155">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51495" g_stop="51735" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="653" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51736" i_stop="51815" i_length="80">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51816" g_stop="51977" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="815" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51978" i_stop="52461" i_length="484">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52462" g_stop="52613" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="967" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52614" i_stop="52684" i_length="71">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52685" g_stop="53268" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1550" r_length="583" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U321884" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1551</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50702" e_stop="50933"/>
          <exon e_start="51081" e_stop="51143"/>
          <exon e_start="51223" e_stop="51339"/>
          <exon e_start="51495" e_stop="51735"/>
          <exon e_start="51816" e_stop="51977"/>
          <exon e_start="52462" e_stop="52613"/>
          <exon e_start="52685" e_stop="53268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTCAAAGAGGTTGAGCTTTGTTGAAAGTACACAATGGAGGCAGTACGTGAACTCTACAACAGAGCCAAACCCTTTCTTGCAGTCATTTTTCTCCAATTTGGGCTAGCAGGCATGGATATTCTCACCAAAGTGGCCTTGAATGAAGGAATGAGTAACTATGTATTTGTTGTGTACCGCCATGCAGTTGCCACTTTGGTTATTGCTCCTTTTGCAATAATTCTAGACAAGTATGTCTCTCCCTCCCTCTCCGTTTTCAATTAACGTGTTTGCAACATCAACTCTAGTCTATTTCTCAGTGGAAGAAAGACATACAAAAAGTGTTTCTTATAATTTCCCCTAGAGAAAATGATGGCAAACTGAATATTTCTTAACAGGAAAGTAAGACCAAAGATGACCCCCTCAATATTTGCTAAGTTGGTACTTCTTAGCTTACTGGAGTAAGTCTTAAAACACTCAAATTCACTTTTTCTCCATGCAATCAGTATCTAACATAAGCATGTTTCTCTTGACCAACAGGCCTGTCATCGACCAGAATCTCTACTCTATTGGCCTGAAATACACAACAGCAACGTTTGCAGCTGCAATGTGCAACATTCTTCCTGCCATTACTTTTATAATGGCCTGGATATTCAGGTAAATAATATGTTTTGTGTCATTGTACAGATATAAATACACATGATCACTAGCAAATATGAATTAATAAGAAATTCCCAACATGGATTTTTTGACAAAAGGACAATTCCCAAATCATGATGTTATTCTTTTGGCACATATATTGTTTATTCTAGGCTTGAGAAGGTGAAGCTTACAAGCATCCGCAGCCAAGCCAAAATAGTTGGGACTGTTGCCACAGTGGCAGGAGCCATGATCATGACACTGGTACGAGGTCCAATAGTTGAACTATTTTGGACAACAGGAAATGCCGGTCATAACTCTCAAAGTGGTGGGTTAAATCTAAGCCATGCTATCAAAGGTTCCATCATGATAACAATTGGGTGCTTCAGTTGGGCTGCATTCATGATTTTGCAGGTAAAGACAGAACTTAGTTAGAAGAAATAAGTAATTACAACTAACAAGCATTATATCTGACTCTAGCACCCTACTCCCAGGCAATCACACTGCGGACTTATCCCGCTGAGCTCTCGCTCACTGCTTGGATATGCTTGTTGGGAACAACTGAGGGAGCCATAGTAGCAATGGTAATGGAGAGAGGAAAACCTGCAGTGTGGGCCATAAACTGGGACTCTAAGTTTCTTGCAGCTGTATACAGTGTAAGTGAACCATATTTTGTAGATCTCCCCTTTTTGCATGCCTCTTGTATACAGCCATATGGCCTTGTTATTATAATTGAAATCTTTTACTTGATTTAAAAAAAAACTTATGCACTAAACCTGATGTGGTTAAATTTTCTTAGAACACGAGCATACAAAGAGTTTTAGAAGTATTTATTCTTTAGATGTTATTCCAACATATGCACCAAATTGCCCAGTTCTGTACTAGTATGGGTGACAGAACATGTCATCTGAAAGCAGCCAATGCTTCTCCAAATTTAAAGACATTAATTTTAAGATCAATGTTCCCAAACCAACGTAGCAAGCAACTTACTTCTGCAACATGAGGGAAGTGAGGGGGGGGGGGGGGAAATCTAGAAGCATAGTTTCACCAATAACTCATAAATTTAAGCCAATTAAAAGCTTCTCACTTGTCAATTTAAAAAAAAAAAAAAAGCTTCTCACTTGTCATGTCACAATCCAGGGAATATTCTGTTCAGGACTCGCGTATTATATTCAAGGAGTCATAATGAAAGACAGGGGCCCTGTTTTTGTCACAGCTTTCAATCCATTAAGCATGGTTATTGTAGCTGTATTGAGTACAATTATTCTACGTGAACAACTGAACCTGGGAAGGTAATACTAATAACGCTAAAGCTCTTATAAGTTACAACCAACACCAAACTCTAATGTAATGACTTTTGCAGGGTACTCGGTGCTGTTGTGATTGTTGTTGGACTTTACATTGTCCTATGGGGTAAAAGTAAGGATCACAAATCTCCATCAATCGATGAACAAGCAATACCAACACATGAAACCAAAATTGACAAGGAACCTTTTAGTCAGACAGTTACCCACATCAATTCATCGAAAGGAACAACTGCTACCGAAGATGAAGGCATATAATGATTTTCTATTTGAGGCTTTGTCTTCCAAATTCCAAAAGGAGGTCTGGCTATAGAGCAGCCTCTTCATCTAAGAAATGAGCTCCTCTTCAGCTGCATCTTGAATTAGTAATTATTAGTTAAAGATGGTTTACAGCGTGTGGCCAAATTTAAGCCAGTTAAACCACCATTTTTGGGAACTTCTTTCTGAACTATAGAATGACTAAACTATGTTAAGCCTATAGGCCTTTTCTTTTGGTTTTTAATCGATATTAAACCATGTATAATAAATTATAGTAACAACAATAATCATGCCCAGACATGTGGATAAGTTGGTTCTTTAACTTCAGATCTACAATCTAAAGTTCTATCTGGAAATATTTCCTGTGTTAAAAGATCAGTGTTTG</genome_strand>
        <mrna_strand>GTGCTTTCAAAGAGGTTGAGCTTTGTTGAAAGTACACAATGGAGGCAGTACGTGAACTCTACAACAGAGCCAAACCCTTTCTTGCAGTCATTTTTCTCCAATTTGGGCTAGCAGGCATGGATATTCTCACCAAAGTGGCCTTGAATGAAGGAATGAGTAACTATGTATTTGTTGTGTACCGCCATGCAGTTGCCACTTTGGTTATTGCTCCTTTTGCAATAATTCTAGACAA...................................................................................................................................................GAAAGTAAGACCAAAGATGACCCCCTCAATATTTGCTAAGTTGGTACTTCTTAGCTTACTGGA...............................................................................GCCTGTCATCGACCAGAATCTCTACTCTATTGGCCTGAAATACACAACAGCAACGTTTGCAGCTGCAATGTGCAACATTCTTCCTGCCATTACTTTTATAATGGCCTGGATATTCAG...........................................................................................................................................................GCTTGAGAAGGTGAAGCTTACAAGCATCCGCAGCCAAGCCAAAATAGTTGGGACTGTTGCCACAGTGGCAGGAGCCATGATCATGACACTGGTACGAGGTCCAATAGTTGAACTATTTTGGACAACAGGAAATGCCGGTCATAACTCTCAAAGTGGTGGGTTAAATCTAAGCCATGCTATCAAAGGTTCCATCATGATAACAATTGGGTGCTTCAGTTGGGCTGCATTCATGATTTTGCAG................................................................................GCAATCACACTGCGGACTTATCCCGCTGAGCTCTCGCTCACTGCTTGGATATGCTTGTTGGGAACAACTGAGGGAGCCATAGTAGCAATGGTAATGGAGAGAGGAAAACCTGCAGTGTGGGCCATAAACTGGGACTCTAAGTTTCTTGCAGCTGTATACAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATTCTGTTCAGGACTCGCGTATTATATTCAAGGAGTCATAATGAAAGACAGGGGCCCTGTTTTTGTCACAGCTTTCAATCCATTAAGCATGGTTATTGTAGCTGTATTGAGTACAATTATTCTACGTGAACAACTGAACCTGGGAAG.......................................................................GGTACTCGGTGCTGTTGTGATTGTTGTTGGACTTTACATTGTCCTATGGGGTAAAAGTAAGGATCACAAATCTCCATCAATCGATGAACAAGCAATACCAACACATGAAACCAAAATTGACAAGGAACCTTTTAGTCAGACAGTTACCCACATCAATTCATCGAAAGGAACAACTGCTACCGAAGATGAAGGCATATAATGATTTTCTATTTGAGGCTTTGTCTTCCAAATTCCAAAAGGAGGTCTGGCTATAGAGCAGCCTCTTCATCTAAGAAATGAGCTCCTCTTCAGCTGCATCTTGAATTAGTAATTATTAGTTAAAGATGGTTTACAGCGTGTGGCCAAATTTAAGCCAGTTAAACCACCATTTTTGGGAACTTCTTTCTGAACTATAGAATGACTAAACTATGTTAAGCCTATAGGCCTTTTCTTTTGGTTTTTAATCGATATTAAACCATGTATAATAAATTATAGTAACAACAATAATCATGCCCAGACATGTGGATAAGTTGGTTCTTTAACTTCAGATCTACAATCTAAAGTTCTATCTGGAAAAAAAAAAAAAAAAAAAAAAAC-TCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332364" ref_strand="+" ref_description="SGN-U332364        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gataaggataagcgcataaatggggaacataaaggtttaggcaagtgcatgtacacattgaagtataaaataaaaatacctgttcttttcgtattgaatgatactccttccttccatttatttgacatggaatttgaaaatgctagtttaatgtgcatatcatattggaaggagttaaagaaaatgataaaatagaagttgtgaagtaattttaatgaagcgaaatgagtattgaggattatatagttgaccccaataggttggtttgaagtgtaatagttgtttctttgtaagtcaaagatttagttttataggggaggtatgacattaaatttatggtacattagttcatttatttgaaatcttcaatttggtgaatatgttatgggttatcagatattagaactgagtcagttttttgagacgtccaaacatgaatgtttgtagcatataatatattgactagtaatatactactcatttttgtaatgataaaagtgagactaagattacctgttagtgcttgaaatatggcggctgctaaatggtggaagcttcaatcttcaaattgctatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="54512" stop="53334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54212" g_stop="53634" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U332364" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54212" e_stop="53634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGGATAAGCGCATAAATGTGGAACATAAAGGTTTAGGCAAGTGCATGTACACATTGAAGTATAAAATAAAAATACCTTTTCTTTTCGTATTGAATGATACTCCTTCCTTCCATTTATTTGACATGGAATTTGAAAATGCTAGTTTAATGTGCATATCATATTGGAAGGAGTTAAAGAAAATGATAAAATAGAAGTTGTGAAGTAATTTTAATGAAGCGAAATGAGTATTGAGGATTATATAGTTGACCCCAATAGGTTGGTTTGAAGTGTAATAGTTGTTTCTTTGTAAGTCAAAGATTTAGTTTTATAGGGGAGGTATGACATTAAATTTATGGTACATTAGTTCATTTATTTGAAATCTTCAATTTGGTGAATATGTTATGGGTTATCAGATATTAGAACTGAGTCAGTTTTTTGAGACGTCCAAACATGAATGTTTGTAGCATATAATATATTGACTAGTAATATACTACTCATTTTTGTAATGATAAAAGTGAGACTAAGATTACCTGTTAGTGCTTGAAATATGGCGGCTGCTAAATGGTGGAAGCTTCAATCTTCAAATTGCTATGTTC</genome_strand>
        <mrna_strand>GATAAGGATAAGCGCATAAATGGGGAACATAAAGGTTTAGGCAAGTGCATGTACACATTGAAGTATAAAATAAAAATACCTGTTCTTTTCGTATTGAATGATACTCCTTCCTTCCATTTATTTGACATGGAATTTGAAAATGCTAGTTTAATGTGCATATCATATTGGAAGGAGTTAAAGAAAATGATAAAATAGAAGTTGTGAAGTAATTTTAATGAAGCGAAATGAGTATTGAGGATTATATAGTTGACCCCAATAGGTTGGTTTGAAGTGTAATAGTTGTTTCTTTGTAAGTCAAAGATTTAGTTTTATAGGGGAGGTATGACATTAAATTTATGGTACATTAGTTCATTTATTTGAAATCTTCAATTTGGTGAATATGTTATGGGTTATCAGATATTAGAACTGAGTCAGTTTTTTGAGACGTCCAAACATGAATGTTTGTAGCATATAATATATTGACTAGTAATATACTACTCATTTTTGTAATGATAAAAGTGAGACTAAGATTACCTGTTAGTGCTTGAAATATGGCGGCTGCTAAATGGTGGAAGCTTCAATCTTCAAATTGCTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328871" ref_strand="+" ref_description="SGN-U328871        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tgactgcgaaggagacataccggcagtaagattttcacctaattggaagtggttgagtcattagagatatacaatttgttgaaaagagactataacatctgttaagtgcttaaaatgctaactttaaactactaagtcgacaatgcttatgaaagtgattaaagacatttgtgatagatgggatgcttatgattttagtttcttagttggaaaaatagacaaagatctctgcatatgtttcaggttcacgttttctgcatgcatcaacatttattatatcttcaccctaaccatatttgaaaagcaaggaaaataagaaaattatacttgtcttagaaagaaaaagttgtgcagagaaagagagaagaaaacaaaaaaaatacgtaaggttagctagagacatgttcaatataaatggtgtttcctccgttataaaaaataaataaaaaattggtacttcatttcaattcaaatgacatagtatgaatcaagataaaatttaacttaaaatcggagatgtttgaaacttgtgttgctataaaagcttttcattaatggcaaaatgagaagttaactgctagatatttccaaatataaaaatgtgtcattcttttccctacatatatggattaacaaggaaatactgtcacataagattttatctgaaggagtagatctgtcctttaaaaaaaaaaattgtcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="55372" stop="54065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55072" g_stop="54365" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U328871" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55072" e_stop="54365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGCGAAGGAGACATACCGGCAGTAAGATTTTCACCTAATTGGAAGTGGTTGAGTCATTAGAGATATACAATTTGTTGAAAAGAGACTATAACATCTGTTAAGTGCTTAAAATGCTAACTTTAAACTACTAAGTCGACAATGCTTATGAAAGTGATTAAAGACATTTGTGATAGATGGGATGCTTATGATTTTAGTTTCTTAGTTGGAAAAATAGACAAAGATCTCTGCATATGTTTCAGGTTCACGTTTTCTGCATGCATCAACATTTATTATATCTTCACCCTAACCATATTTGAAAAGCAAGGAAAATAAGAAAATTATACTTGTCTTAGAAAGAAAAAGTTGTGCAGAGAAAGAGAGAAGAAAACAAAAAAAATACGTAAGGTTAGCTAGAGACATGTTCAATATAAATGGTGTTTCCTCCGTTATAAAAAATAAATAAAAAATTGGTACTTCATTTCAATTCAAATGACATAGTATGAATCAAGATAAAATTTAACTTAAAATCGGAGATGTTTGAAACTTGTGTTGCTATAAAAGCTTTTCATTAATGGCAAAATGAGAAGTTAACTGCTAGATATTTCCAAATATAAAAATGTGTCATTCTTTTCCTAACATATATGGATTAACAAGGAAATACTGTCACATAAGATTTTATCTGAAGGAGTAGATCTGTCCTTTAAAAAAAAAAAATTGTCAAAACT</genome_strand>
        <mrna_strand>TGACTGCGAAGGAGACATACCGGCAGTAAGATTTTCACCTAATTGGAAGTGGTTGAGTCATTAGAGATATACAATTTGTTGAAAAGAGACTATAACATCTGTTAAGTGCTTAAAATGCTAACTTTAAACTACTAAGTCGACAATGCTTATGAAAGTGATTAAAGACATTTGTGATAGATGGGATGCTTATGATTTTAGTTTCTTAGTTGGAAAAATAGACAAAGATCTCTGCATATGTTTCAGGTTCACGTTTTCTGCATGCATCAACATTTATTATATCTTCACCCTAACCATATTTGAAAAGCAAGGAAAATAAGAAAATTATACTTGTCTTAGAAAGAAAAAGTTGTGCAGAGAAAGAGAGAAGAAAACAAAAAAAATACGTAAGGTTAGCTAGAGACATGTTCAATATAAATGGTGTTTCCTCCGTTATAAAAAATAAATAAAAAATTGGTACTTCATTTCAATTCAAATGACATAGTATGAATCAAGATAAAATTTAACTTAAAATCGGAGATGTTTGAAACTTGTGTTGCTATAAAAGCTTTTCATTAATGGCAAAATGAGAAGTTAACTGCTAGATATTTCCAAATATAAAAATGTGTCATTCTTTTCCCTACATATATGGATTAACAAGGAAATACTGTCACATAAGATTTTATCTGAAGGAGTAGATCTGTCCTTT-AAAAAAAAAAATTGTC-AAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328330" ref_strand="+" ref_description="SGN-U328330        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:24122316-24124406 FORWARD | Aliases: MMN10.5, MMN10_5(evalue: 1e-68, score=256) genbank/nr: gi|9757903|dbj|BAB08350.1| gene_id:MMN10.5~unknown protein [Arabidopsis thaliana](evalue: 7e-67, score=256)">
      <seq>ttttagcagagaggatgatagcacaatatcagtgagtcactcattcaatgacaataatactgccatatcaatgggtcagcaattcggtaatgatgatagcaatattacatcagttggacaaactattaatacgatggctgacaccaatccacctattagccactgctacagcaaagtcaatgacaatgccatatcagtgagtcagacctatagcaaagtggaaaacaataatttgtcaatgagccaatcttttggcaatggagaaagcaatatcatatcctttggtggattcaatgacgatgacgatataaattcttctggaaggctgatttgcagttatgacttattaatgagtcagtcttcaggccaaaaatcagatattgtgactggaaagcgattggttgagtcaaatgcggatacagttacaactgttgctcaaatggctggcagtaaggaatttatttccaaaaaggaggagcagaaagcaactaaaaagcctccttcgaacagtttcccttcaaatgtgagaagcttgctctcaactggtatgttagatggagtacctgtcaagtatatagcttggtccagagagaaggagctccgtggtattataaaaggctctggttacctctgtggctgtcagtcatgtaatttttccaaggcaattaacgcttatgagtttgagcgacatgctggttgtaagacaaaacaccctaataatcatatatactttgagaatgggaagacgatctacggaattgttcaggagctcaggaacacacctcaggatttactatttgaagttattcagacaattactggatcatccattaaccaaaaatcatttcgcatctggaaagaatcttttctagctgcgacacgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="56885" stop="55156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56585" g_stop="55994" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55993" i_stop="55915" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.340" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55914" g_stop="55846" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="661" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55845" i_stop="55761" i_length="85">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55760" g_stop="55562" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="860" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55561" i_stop="55483" i_length="79">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55482" g_stop="55456" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="887" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U328330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56585" e_stop="55994"/>
          <exon e_start="55914" e_stop="55846"/>
          <exon e_start="55760" e_stop="55562"/>
          <exon e_start="55482" e_stop="55456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGCAGAGAGGATGATAGCACAATATCAGTGAGTCACTCATTCAATGACAATAATACTGCCATATCAATGGGTCAGCAATTCGGTAATGATGATAGCAATATTACATCAGTTGGACAAACTATTAATACGATGGCTGACACCAATCCACCTATTAGCCACTGCTACAGCAAAGTCAATGACAATGCCATATCAGTGAGTCAGACCTATAGCAAAGTGGAAAACAATAATTTGTCAATGAGCCAATCTTTTGGCAATGGAGAAAGCAATATCATATCCTTTGGTGGATTCAATGACGATGACGATATAAATTCTTCTGGAAGGCTGATTTGCAGTTATGACTTATTAATGAGTCAGTCTTCAGGCCAAAAATCAGATATTGTGACTGGAAAGCGATTGGTTGAGTCAAATGCGGATACAGTTACAACTGTTGCTCAAATGGCTGGCAGTAAGGAATTTATTTCCAAAAAGGAGGAGCAGAAAGCAACTAAAAAGCCTCCTTCGAACAGTTTCCCTTCAAATGTGAGAAGCTTGCTCTCAACTGGTATGTTAGATGGAGTACCTGTCAAGTATATAGCTTGGTCCAGAGAGGTAAACTTTAAATTATATGAGTTTTATTTTTGCAACTGTGATGATCACTAGATGACATCGTTCTTCCTTTGAATGGTAGAAGGAGCTCCGTGGTATTATAAAAGGCTCTGGTTACCTCTGTGGCTGTCAGTCATGTAATTTTTCCAAGGTACATTTAATACCAGTTTTCATTATTGCTGGACCAGCTTGTTGCACAATTTACTGATCAGATGTGATATAACTTCCACGTGTAGGCAATTAACGCTTATGAGTTTGAGCGACATGCTGGTTGTAAGACAAAACACCCTAATAATCATATATACTTTGAGAATGGGAAGACGATCTACGGAATTGTTCAGGAGCTCAGGAACACACCTCAGGATTTACTATTTGAAGTTATTCAGACAATTACTGGATCATCCATTAACCAAAAATCATTTCGCATCTGGAAAGGTGTTTTAATTAACTGAGCTGTTAATATTCTTGAATGTTTACTTTTTTCTCATGTTGGCATCTTTTCTTATGTCTTCAGAATCTTTTCTAGCTGCGACACGTGAAC</genome_strand>
        <mrna_strand>TTTTAGCAGAGAGGATGATAGCACAATATCAGTGAGTCACTCATTCAATGACAATAATACTGCCATATCAATGGGTCAGCAATTCGGTAATGATGATAGCAATATTACATCAGTTGGACAAACTATTAATACGATGGCTGACACCAATCCACCTATTAGCCACTGCTACAGCAAAGTCAATGACAATGCCATATCAGTGAGTCAGACCTATAGCAAAGTGGAAAACAATAATTTGTCAATGAGCCAATCTTTTGGCAATGGAGAAAGCAATATCATATCCTTTGGTGGATTCAATGACGATGACGATATAAATTCTTCTGGAAGGCTGATTTGCAGTTATGACTTATTAATGAGTCAGTCTTCAGGCCAAAAATCAGATATTGTGACTGGAAAGCGATTGGTTGAGTCAAATGCGGATACAGTTACAACTGTTGCTCAAATGGCTGGCAGTAAGGAATTTATTTCCAAAAAGGAGGAGCAGAAAGCAACTAAAAAGCCTCCTTCGAACAGTTTCCCTTCAAATGTGAGAAGCTTGCTCTCAACTGGTATGTTAGATGGAGTACCTGTCAAGTATATAGCTTGGTCCAGAGAG...............................................................................AAGGAGCTCCGTGGTATTATAAAAGGCTCTGGTTACCTCTGTGGCTGTCAGTCATGTAATTTTTCCAAG.....................................................................................GCAATTAACGCTTATGAGTTTGAGCGACATGCTGGTTGTAAGACAAAACACCCTAATAATCATATATACTTTGAGAATGGGAAGACGATCTACGGAATTGTTCAGGAGCTCAGGAACACACCTCAGGATTTACTATTTGAAGTTATTCAGACAATTACTGGATCATCCATTAACCAAAAATCATTTCGCATCTGGAAAG...............................................................................AATCTTTTCTAGCTGCGACACGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330258" ref_strand="+" ref_description="SGN-U330258        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:24122304-24124406 FORWARD | Aliases: None(evalue: 7e-10, score=60.1) genbank/nr: gi|9757903|dbj|BAB08350.1| gene_id:MMN10.5~unknown protein [Arabidopsis thaliana](evalue: 4e-08, score=60.1)">
      <seq>gttacagtttaccggagaggtacaattctaattttccgatcaagactttgtcggagacggaacactggaaatacttcgatcggtacctatatatatcttgcagttctgagtggccaagtgaatccacaggaaatggcttatgataactcatccacgcttgagcccaaacgttcccatcaatggttcatggatggcatcgagcctgaattgcttcccaacaagaagcaagccattgaagtacctaatcacagttcattctctggacttttaagttccaatattgccccctggatgaacactccaggtttccactcagtatcaggccaatatgcagaaagacagtttgacaatgacagcgctagatcgctcagctttgatgacaacagtgttccatccgttggcataggcaacatgaatatgtctagaaaggtgatggaagatccatttggaagtgattcctcatttggtttatccatatcccatacactggaggatcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="-" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="59542" stop="56663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59242" g_stop="59149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59148" i_stop="57370" i_length="1779">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57369" g_stop="56963" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="501" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="-" ref_id="SGN-U330258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59242" e_stop="59149"/>
          <exon e_start="57369" e_stop="56963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAGTTTACCGGAGAGGTACAATTCTAATTTTCCGATCAAGACTTTGTCGGAGACGGAACACTGGAAATACTTCGATCGGTACCTATATATGTAATAATCACCGATTCTCCATTATGCTTATTATATTGTATATCTTCACCAATGCATGTCGGAGTGTTAGGGTTATGTTTTTAGACCATTTCTGTTGGATTATCAATGTTTCATTTATTAAACGTCTCAGTGAACTGATGTGTGTTGAATTGAAAATGTTTAACATTTTGTTTGGTTTCTGAGAAATTGATGCAGAACTGTATGAGCATTGGTTGCAAACTAGAGATATAATTGTAGTTTGATCGTAAAGTAGATTGGAAAAGCTTAATGAATCTTAGCCAAGTGAATTGAGTGTATATCTGGTTTTCTTAATGTTAGTGCAGTGCAGTTGCAATGAGTGGTTGGCTATGTGAAAGTTGTTTAGTACTCTGACAAGCTCGTGTAGAGAGTAAAAGTGAATAAGATAGTTTTGTCAAGCTTTGTGAGTTTCTATTACATCGAGAATCAATACGCAACGTTTCGTTGCTATTAGGAACTAGGAGGAATCAAATTGCTAGGAATGAACTCACACTGAAGTGGCTATATTGGTCAACTGCATTCTGCTTGTGTTCGACTATAGTTGTTAAAATTCTTTTATCTATTTATGGAACATCTAAATTATAGGATACCTGGTTCAACGCGCTTGTGCATTATAGAGAAACTGATACCATGTTTGGTTGTCAGTATGAATATTTCCAACTTTTAGTGATCCATTTCGTCTTTCATCCTTCCTTATGAATTGACTGCAATTCATAATTGGAATTTGATGTCATTTTAGGTCGAACGAATGTCAGGTAACAATACGAGAGACAAGAATTGGGTTGGTCTATTCTATTTGGAGCAACTCATGTTTTAATCCCTTCTCCACATACTTGCTTGACTACATAAATTTTTATCAAATTAGTCTCAAGAAGTATCATCAGATTATATCAATTATAAACTTGGAACTCCCATTGTCAAATCATAATGTTCATAATTTCCTAATAGTAAAAAAATTCTTAACATTCAAAATTCTTCTCTTTAACATGCTTCGGTTGGTCATATCAAAGTTTAGATGGAACTTTTGTCGTCAAAAAAAAAGTTTGGATGGAATTAGAACTAATATCTTCTCTTTTTTTGGGTGGGGTCAGGGTGGGGGTGGGTGGGGTGTGTGTGTGAATTTTAAGCACTATATCAAGACCTTCCAAGCATAATACCACATTCTTGGAATTTCAGTCTCCTGCAGCTGATGAACAGAGTACGATTTTAGGAAGAAAGATATGATTCGAAAAATTAAATCTGGAGTAGATACATGATAACTCAGTGTTATTGTTTACGACTTGTCTCAAACAGATGTTGACCTACATTGAATAGTTGATACATGATAAACTAGTATTACAATTTACAATGTCTCAAACATGGAAAGGTAGATTGACAAGCTAGTATTATAGTTTACAACTTGTCTCAATCTTAGAGAGGTAGATAATTGATAAGCTAGTAGTATTCAGACTGTTTTTATGATTTATTGTTGGTCCAACAAATTTCTGAATTACGTTCTGGGCTCTTTATACTTTTCTTATTGGTCAAGTCAATTTTGTTAGTTTTGCTAAATTTTCTCTCTTATATCTTTAATCTCAAATAGAACTTGAATAAGAAAAGGAATGTTGTAGGATGTCATACACTTCGGGAAAAAGAAGTGAATGACTATTCACGATTGATTTACCTTACATTTCCCCTTTAGTAACTAGCTTAGAGTTTCGACAAAAATTCTCTCCCCGGTAAAATCTCAAATCACAATCTTTTTTGTTGTAATCTTTGTAGATCTTGCAGTTCTGAGTGGCCAAGTGAATCCACAGGAAATGGCTTATGATAACTCATCCACGCTTGAGCCCAAACGTTCCCATCAATGGTTCATGGATGGCATCGAGCCTGAATTGCTTCCCAACAAGAAGCAAGCCATTGAAGTACCTAATCACAGTTCATTCTCTGGACTTTTAAGTTCCAATATTGCCCCCTGGATGAACACTCCAGGTTTCCACTCAGTATCAGGCCAATATGCAGAAAGACAGTTTGACAATGACAGCGCTAGATCGCTCAGCTTTGATGACAACAGTGTTCCATCCGTTGGCATAGGCAACATGAATATGTCTAGAAAGGTGATGGAAGATCCATTTGGAAGTGATTCCTCATTTGGTTTATCCATATCCCATACACTGGAGGATCATAAA</genome_strand>
        <mrna_strand>GTTACAGTTTACCGGAGAGGTACAATTCTAATTTTCCGATCAAGACTTTGTCGGAGACGGAACACTGGAAATACTTCGATCGGTACCTATATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCAGTTCTGAGTGGCCAAGTGAATCCACAGGAAATGGCTTATGATAACTCATCCACGCTTGAGCCCAAACGTTCCCATCAATGGTTCATGGATGGCATCGAGCCTGAATTGCTTCCCAACAAGAAGCAAGCCATTGAAGTACCTAATCACAGTTCATTCTCTGGACTTTTAAGTTCCAATATTGCCCCCTGGATGAACACTCCAGGTTTCCACTCAGTATCAGGCCAATATGCAGAAAGACAGTTTGACAATGACAGCGCTAGATCGCTCAGCTTTGATGACAACAGTGTTCCATCCGTTGGCATAGGCAACATGAATATGTCTAGAAAGGTGATGGAAGATCCATTTGGAAGTGATTCCTCATTTGGTTTATCCATATCCCATACACTGGAGGATCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312970" ref_strand="+" ref_description="SGN-U312970        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: | Symbol: None | nascent polypeptide-associated complex (NAC) domain-containing protein, similar to SP:P20290 Transcription factor BTF3 (RNA polymerase B transcription factor 3) {Homo sapiens}; contains Pfam profile PF01849: NAC domain | chr1:27543969-27545603 REVERSE | Aliases: T18K17.10, T18K17_10(evalue: 6e-49, score=190) genbank/nr: putative(evalue: 6e-52, score=206)">
      <seq>ttttttccctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="79779" stop="82934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80079" g_stop="80131" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80132" i_stop="81046" i_length="915">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81047" g_stop="81114" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81115" i_stop="81655" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81656" g_stop="81804" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="270" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81805" i_stop="81891" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81892" g_stop="81948" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81949" i_stop="82185" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82186" g_stop="82224" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82225" i_stop="82314" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82315" g_stop="82628" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="680" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="713"/>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U312970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80079" e_stop="80131"/>
          <exon e_start="81047" e_stop="81114"/>
          <exon e_start="81656" e_stop="81804"/>
          <exon e_start="81892" e_stop="81948"/>
          <exon e_start="82186" e_stop="82224"/>
          <exon e_start="82315" e_stop="82628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCCTCTTATCTGCGGCTAGGGTTTTAGCTCAGTCTTCTCCTCACAAGGTTAGCTTCTCTATTGCTCCACCTACCCCCTAATCTGCCCAATGGGTGTTCAATTTTATGATTTTCTTGGTTTTTCTCTCTTTGCTTGTACATGTATCTGATGAATTCTGTGTGTTAAGTGTATGCTTTTTGTTTGGATAATAGTATTGAATGTTCTTTTTGTGTTTAAATTGTTGATGGTGTTTGGATGAATTGATGTTATTGATTCAATTGGATATGGTTTATGTTTCCTGGATCTTAATTTGTTGAAAAATGAAAAGAAGTTGCTTGCTTTATGGTGGAACTTTGACTGTGTACTATACTATAGTAGGACTGTGGTATGGTAGAATGGGGATTTTTCTTACTGTTAGATGACACAGAAGGGTGAAATTTTGATTTTTGAAGGATAAAGCTTATATTTTTAATGTGGATTTTGGAAATGATTTTGTAATATTCTTGAATAAATGTTTTGCATACTTTGTAACTGCATAAAGGGGATAAATGACCAATTATCTAATGACATTTCTTTACTTGTTGATTTTGTAAGCTCCCCTTAAGCACTTAAGTGTTTGTCTTTCTATAGTTTGCTGGGAGACTTACTATTTTGTTATCTTCTTTTTGCATATCAATGACCAAGTTTATTAGTTTAGAAAACTGGTTACCTGAAAATATGGATGTGTTGTTTCCTGGTCTTGTCTTTGTCAAGTTGGTACTTGCTGTTAGATATAACATTCATGTATGCTTGTGTGTTAAGCTTCTTTTATATAAGCATTTATTTTTTGGCTTGTGAGTTTTCTGTATGTGTTTTAAGTGTAGTTTTATAGTCATGGAGGTTGTTACAGATGTATCGTGCCTGTAAAACTGTGCGACAAATATGCCAGTTTCTTGTTGCTTGTTTATTGAGAAATGTTGACTTTTGCTGTTTTTCTGGGACAGATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>TTTTTTCCCTCTTATCTGCGGCTAGGGTTTTAGCTCAGTCTTCTCCTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312968" ref_strand="+" ref_description="SGN-U312968        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | nascent polypeptide-associated complex (NAC) domain-containing protein, similar to SP:P20290 Transcription factor BTF3 (RNA polymerase B transcription factor 3) {Homo sapiens}; contains Pfam profile PF01849: NAC domain | chr1:27543969-27545603 REVERSE | Aliases: T18K17.10, T18K17_10(evalue: 1e-47, score=186) genbank/nr: putative(evalue: 1e-50, score=202)">
      <seq>gaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgatgatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagtcactcaatgcgtggcttttgaattcaccaaatttttacaagctgtgtgggagaaaaagactcaaccttgatggattcaaaatggccattatttcaccaatgctggaacgaagtcaagtatttagaggtttcaatccctttttggttatataaataggtcaagtgggaaacaacaataagatattattcaggtgcttttgaccagactaataaggtcgttgtggcaaagtactactgtatcagatgtaatggattagcatctcaaaacacttctatggaaaggagaccaataatagatggacattcattattttattaagggaaaagggtcagatataccctcaattttatcagttagaactgatatatcccttattatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="80749" stop="85666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81049" g_stop="81114" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81115" i_stop="81655" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81656" g_stop="81804" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81805" i_stop="81891" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81892" g_stop="81948" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="272" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81949" i_stop="82185" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82186" g_stop="82224" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="311" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82225" i_stop="82314" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82315" g_stop="82492" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="489" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82493" i_stop="84983" i_length="2491">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84984" g_stop="85366" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="872" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U312968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81049" e_stop="81114"/>
          <exon e_start="81656" e_stop="81804"/>
          <exon e_start="81892" e_stop="81948"/>
          <exon e_start="82186" e_stop="82224"/>
          <exon e_start="82315" e_stop="82492"/>
          <exon e_start="84984" e_stop="85366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAAACTATTTTTAAGTAGCTCGTTATCTTGTTGAAGTTATCTCCTCTCTTATTACTTTCACACTTTGCTGAGGAAATTCTGGGATTTTAAGTGCAGTTTTTAAACCAAAAGGAAGACTCCAATGTTTATTTTTCAAAGAATTCTGTTGATCACAAGAAAGGTAAGTGTTTTTCCAGCTAATAGAGCAAGGTTTGGAAAGTAATTAAAAAGTACTTTACAATCCATTTGTTCAACGTTTAATACACAACAAACACTTAAAGCAAGGATTTATTCTATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGAGCTTTCTATTTGATTGTATCGAAAGGTGGCTTATTAGTATCATTTAGCAGATGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAACTTGTTATCTCTAGACATTCTTCATGGAAAGCGCCGCGCAGTTGCATGTACTATCATGGTCAGGAAAAGCTTCTTGCAATATGCATTTGGCACAGATAAATCTGAAAACGGAAGAACTTTTAACTCTGCATCCAAGTTTTTGATTATCCATCTATTTATGCAGATTTCTTTTCCTATTCAGCTTAAATGCTGCTATGAGTTCTAAGGGGTAGGCAAATAAAGTGCAATTAACAGAGAAGCAGCAGAGAATATAAGCAATGATTTGTTAAGACATCTGATGTGGCATATGAGATTAACTTACTCCCAAAAAGCTAGTTCATCACGGGAAAATGATCAAGTCCATACAAGCTAACTACTCCGTTGTCCAATCAATGTGAAACTTTGACTCGCTCTAGTAAGTAGTAACTCCCTTCGCACCCAGGCCTAATTGGGGCATGGACCGCGGATTGAATGTCCAAATTGAGAGGAACCTTTAATACTATTTTAAGATAATGACACGTGAATTTAACTTAATCTCAAAATCTAATTCATAATTGGAGAATTGTTTGAGTTTATATGAATCAACTACTGGTCCATCACCACTCTACTCTTAACATAATCAAATTTGACAAAAGTGTTAGTTGCACACATGAAGGACCTCTTTAGAATGGTGGAAGTAGTGATGGAGCCACCAATGTCATTTTACACCCCTTTCGCTGGAACATTATATTGGTTCATCAACTACTCAACTTGCTGCAAATGTCAACCTTAACCCTTGAATCATTGATTTTGCAGTCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</genome_strand>
        <mrna_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATGATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACCAATAATAGATGGACATTCATTATTTTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAACTGATATATCCCTTATTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330565" ref_strand="+" ref_description="SGN-U330565        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ggaaaaaaaagttattttgtacttagttacaactccccagtagaaaataagttgttgcaatgaccctactggcatccaataggctcatgtggtacttagagatcacataacattcaaaattctgaatactgttagaactcatgtagccacatttttagttagtatcaattagcataactgaaactggtctattattatacagggttacagttctgtacattatattttgttgcaaagtccactgctgccatcttctggctttccagctaaaactagaaattcatccttgtgatcgattctcacatgcttccactgtttgcttcactctcaactatcagtactactgtgactagcaacgttgtcatcatagtgatcgccagatggtcaatcttgttcagggcataacgactccttaccccgattaatagataattcttggaggggtggactactgattttatggatagtcaaagtagattactcaacctctgagttactatatcatttgttgcttctactgtttccttcttacacttgcaaaatatgcaaaatcagccttcatcatacggtggtactgctaattatcagctctctaggtataagttttcataagtagaatgatcctgcagacatagctaaacagaagttgtaaagttgtgctctgatacataaggattggaatagaggattgacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="83218" stop="84509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83517" g_stop="84209" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="713"/>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U330565" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83517" e_stop="84209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAAAGT-ATTTTGTAC-TAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGA-CCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</genome_strand>
        <mrna_strand>GGAAAAAAAAGTTATTTTGTACTTAGTTACAACTCCCCAGTAGAAAATAAGTTGTTGCAATGACCCTACTGGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nozSkA/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-xxBTf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0088K02.1" temp_strand="+" temp_description="C09SLm0088K02.1  EF692492.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0088K02 sequenced_by:sistemasgenomicos">
        <position start="85317" stop="86368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85617" g_stop="86054" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0088K02.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0088K02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85617" e_stop="86054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTT-AAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10570" PGL_stop="7024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10570" e_stop="10033"/>
            <exon e_start="9164" e_stop="8746"/>
            <exon e_start="7663" e_stop="7024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.921" e_score="0.996"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10570" e_stop="10033" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.921">
            <gDNA_intron_boundary i_start="10032" i_stop="9165" i_length="868"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="9164" e_stop="8746" e_length="419"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8745" i_stop="7664" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7663" e_stop="7024" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10570" stop="10033"/>
              <exon start="9164" stop="8746"/>
              <exon start="7663" stop="7024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG : ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCT : ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</gDNA_template>
            <first_frame> F  G  L  P  L  K  S  M  V  I  *  G  Y  N  N  D  P  I  Y  S  F  S  G  Y  A  S  L  K  F  E  Q  F  N  L  L  H  P  L  F  R  S  L  Y  F  E  I  L  W  C  G  A  E  S  S  *  V  F  F  F  W  E  G  N  *  G  F  W  F  W  W  R  W  E  I  E  G  H  R  I  F  T  M  H  S  V  S  P  F  L  F  D  L  L  T  L  P  Q  A  A  S  F  Y  G  V  L  C  S  H  R  L  K  P  W  R  N  S  F  S  *  R  L  I  S  S  S  S  V  F  F  F  F  C  C  C  C  F  S  C  D  L  A  G  F  L  F  L  S  R  G  F  F  S  C  F  T  S  F  S  E  *  L  *  S  N  L  V  E  V  C  V  I  L  L  Y  I  D  I  L  K   : D  F  C  C  S  L  *  L  M  A  V  C  S  A  T  Y  K  C  D  S  E  S  L  S  C  F  C  E  S  S  K  E  T  L  G  S  A  S  C  Y  P  G  G  P  F  V  S  D  L  G  Y  H  F  T  E  S  L  S  I  K  D  G  E  D  L  I  Y  K  E  H  S  N  T  L  E  E  D  G  T  E  D  M  H  A  N  D  A  D  T  G  S  T  D  S  E  K  C  L  I  K  S  S  E  F  P  C  S  S  M  S  T  P  P  A  E  L  V  H  E  K  E  Q  E  A  D  A  K  S  T  D  L  P  Y  S  R  S  I  S  S  P  :  T  A  L  K  L  V  S  A  I  K  G  S  R  E  K  Q  G  K  P  P  K  K  L  S  V  T  W  A  P  D  V  Y  D  P  I  P  T  A  A  S  H  V  P  I  K  G  Q  R  H  R  S  D  H  R  K  N  G  K  S  K  Q  K  S  N  G  K  S  S  R  G  S  K  G  K  D  K  K  Q  G  R  K  H  G  G  S  T  R  R  S  Y  Y  P  L  E  D  K  D  I  M  S  C  N  R  F  H  C  L  E  D  E  I  T  A  H  S  S  G  L  Q  A  G  A  M  D  Y  D  I  G  S  P  P  D  S  F  C  G  S  S  F  R  K  K  S  V  T  E  L  H  F  P  V  A  K  A  S  *  A  S  F  L  I  V  G  V  F  S  S  R  L  F  P  S  S  C  K  *  I  S  L  T  L  I  *  V  V  G  V  V  I  E  L  L  A  F  L  Y  L  K  K  L  I  N  F  *  P  V  E  W  T  D  D  F  L  </first_frame>
            <second_frame>  L  V  F  R  *  N  R  W  *  F  R  A  I  I  M  I  R  F  T  R  F  L  V  M  L  L  *  N  S  S  N  S  I  F  F  I  H  C  F  D  H  C  T  L  R  F  C  G  V  E  L  N  R  V  E  F  F  F  F  G  R  G  I  R  D  F  G  F  G  G  G  G  K  S  K  G  I  A  S  L  R  C  I  R  C  R  L  F  Y  L  I  C  *  L  Y  L  K  L  L  L  S  M  E  F  C  V  L  I  V  *  S  L  G  V  I  V  L  V  N  V  *  F  H  L  R  L  F  S  F  S  S  V  V  A  V  S  V  V  I  L  L  V  F  C  F  F  R  G  D  F  S  A  V  S  H  L  F  P  S  S  C  S  R  I  W  W  K  F  A  *  F  C  Y  T  S  T  Y  *  K  :  I  F  A  A  L  F  N  *  W  P  F  V  L  L  L  T  S  V  T  L  K  V  *  V  A  F  V  S  H  Q  R  R  L  L  V  P  L  L  A  I  Q  E  V  L  L  L  V  I  L  G  T  I  S  L  N  L  *  V  L  R  M  V  K  T  *  F  T  R  N  I  P  T  H  W  R  K  M  E  L  K  I  C  M  Q  M  M  L  T  L  A  V  R  T  Q  R  N  A  *  S  S  P  Q  N  F  H  A  L  L  *  A  L  P  L  L  S  W  F  M  R  R  S  R  R  L  M  L  N  Q  L  T  C  L  I  H  V  P  Y  L  H  L :   Q  L  *  S  L  Y  L  P  L  K  V  A  V  R  N  K  A  S  H  P  R  S  C  L  *  H  G  L  P  M  C  M  T  L  S  Q  Q  Q  L  R  M  C  Q  S  R  G  N  A  T  G  V  T  T  G  R  M  E  R  A  S  R  K  V  M  A  N  L  H  V  E  A  K  V  K  T  R  N  K  V  A  N  M  V  E  V  P  G  G  V  I  I  L  *  R  I  R  T  *  *  V  V  I  A  F  T  V  W  R  M  K  L  L  L  I  L  V  G  C  R  L  V  P  W  I  M  I  L  A  A  P  R  I  H  S  A  V  A  V  S  E  R  N  L  S  Q  S  C  I  S  Q  L  Q  R  L  H  E  L  P  F  *  L  L  V  C  F  L  L  D  C  F  L  L  V  V  N  K  *  V  *  R  L  S  E  L  W  E  L  L  *  S  C  W  H  F  C  T  *  K  N  L  L  T  F  D  L  L  N  G  R  M  T  F  C </second_frame>
            <third_frame>   W  S  S  V  E  I  D  G  N  L  G  L  *  *  *  S  D  L  L  V  F  W  L  C  F  F  E  I  R  A  I  Q  S  S  S  S  I  V  S  I  T  V  L  *  D  F  V  V  W  S  *  I  E  L  S  F  F  F  L  G  G  E  L  G  I  L  V  L  V  A  V  G  N  R  R  A  S  H  L  Y  D  A  F  G  V  A  F  S  I  *  S  V  D  F  T  S  S  C  F  F  L  W  S  F  V  F  S  S  F  E  A  L  A  *  *  F  *  L  T  F  N  F  I  F  V  C  F  L  F  L  L  L  L  L  F  Q  L  *  S  C  W  F  S  V  S  F  E  G  I  F  Q  L  F  H  I  F  F  R  V  V  V  V  E  S  G  G  S  L  R  D  F  A  I  H  R  H  T  E  R :   F  L  L  L  S  L  I  D  G  R  L  F  C  Y  L  Q  V  *  L  *  K  F  K  L  L  L  *  V  I  K  G  D  S  W  F  R  F  L  L  S  R  R  S  F  C  *  *  S  W  V  P  F  H  *  I  S  E  Y  *  G  W  *  R  L  D  L  Q  G  T  F  Q  H  I  G  G  R  W  N  *  R  Y  A  C  K  *  C  *  H  W  Q  Y  G  L  R  E  M  L  D  Q  V  L  R  I  S  M  L  F  Y  E  H  S  P  C  *  V  G  S  *  E  G  A  G  G  *  C  *  I  N  *  L  A  L  F  T  F  H  I  F  T   : Y  S  F  E  A  C  I  C  H  *  R  *  P  *  E  T  R  Q  A  T  Q  E  A  V  C  D  M  G  S  R  C  V  *  P  Y  P  N  S  S  F  A  C  A  N  Q  G  A  T  P  Q  E  *  P  Q  E  E  W  K  E  Q  A  E  K  *  W  Q  I  F  T  W  K  Q  R  *  R  Q  E  T  R  S  Q  T  W  W  K  Y  Q  E  E  L  L  S  S  R  G  *  G  H  N  E  L  *  S  L  S  L  S  G  G  *  N  Y  C  S  F  *  W  A  A  G  W  C  H  G  L  *  Y  W  Q  P  P  G  F  I  L  R  *  Q  F  P  K  E  I  C  H  R  V  A  F  P  S  C  K  G  F  M  S  F  L  S  D  C  W  C  V  F  F  S  I  V  S  F  *  L  *  I  N  K  F  D  A  Y  L  S  C  G  S  C  Y  R  V  V  G  I  F  V  L  K  K  T  Y  *  L  L  T  C  *  M  D  G  *  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9144" stop="8746"/>
                    <exon start="7663" stop="7196"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMAVCSATYKCDSESLSCFCESSKETLGSASCYPGGPFVSDLGYHFTESLSIKDGEDLIYKEHSNTLEEDGTEDMHANDADTGSTDSEKCLIKSSEFPCSSMSTPPAELVHEKEQEADAKSTDLPYSRSISSPTALKLVSAIKGSREKQGKPPKKLSVTWAPDVYDPIPTAASHVPIKGQRHRSDHRKNGKSKQKSNGKSSRGSKGKDKKQGRKHGGSTRRSYYPLEDKDIMSCNRFHCLEDEITAHSSGLQAGAMDYDIGSPPDSFCGSSFRKKSVTELHFPVAKAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10488" stop="10291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSNSIFFIHCFDHCTLRFCGVELNRVEFFFFGRGIRDFGFGGGGKSKGIASLRCIRCRLFYLIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22900" PGL_stop="17652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22900" e_stop="22873"/>
            <exon e_start="21947" e_stop="21199"/>
            <exon e_start="18004" e_stop="17652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.679"/>
          <exon-intron don_prob="0.994" acc_prob="0.755" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.679">
            <gDNA_exon_boundary e_start="22900" e_stop="22873" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22872" i_stop="21948" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21947" e_stop="21199" e_length="749"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.755">
            <gDNA_intron_boundary i_start="21198" i_stop="18005" i_length="3194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18004" e_stop="17652" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22900" stop="22873"/>
              <exon start="21947" stop="21199"/>
              <exon start="18004" stop="17652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTTGGTTTGTATTATTAAAAATG : ATTTTGGTTCCAATAAACCCCCAAAAACCTCTGCTTAAACCCTTCGAAGTTGGAATCCAATCAACCACCGCCAACCACCGTCAATCGCCGTCAACCGCCATGAATTCATTCAACGCCACCACCCCAAACTTCGACAACCTTCTCCTCCAATCCCTAGTGAACCGTCTCCAAATTCGTCCTCCTTCAAACCCAACTTCCTCCTTTTCCCCACAATCCCTCGAAGATCTCCTCTTCAACACTCTCCCTTTCTCCGACGAAGATGAAGACAACGACGATGATGATAACAACAACGAGTCTTCTTCTTCCAAATCTCAGCTAGCGAAAGAAGAAACAAGGGTTGAGAAAGAGATAATCCGGACAATCCTATCTGGAAAAACTGATTCTCTAAAACCAAATTCAGGTCAAGCTGTTGCTATTGGTGAACATCATATATGTATCGGGTTTCATGAGGATACAGGTTCGGATTATCGGGTGTGGGAGTGGCATGGTCATATCATGCTTTTTGATGAGGAAAATGGGTATTCACCTGAATACATTTATGGGAATTACTTTGAAAGAGTTAATGGTAAGCTTATGAAGAAGAAACAAGAGGAGAAAGAAGAAGAGGAGGAGAGTGAGAAAGAAGAAAAGGAGAGTGATGAGAAAGAGGAGAAGGTTGGGAATTTGGGGTTGAGAGAGTTGATATCATCAGGAGATTCGAATAACGAAGGTCGAATTCTTAGGAGGAATATGAATGCTGGCTCTACAAG : GGTCTAGAGGTTTGCTGTTTTACACCAAAGAAACATTTTGAGGTTTGCTGCGTATCTTCGCTTGGCTGCAATGGAGAGTTTTTACATTTCCTTTTTCCCAAGCTACTTGATGTTGTGTTCAAATAGCATTTTTGCAAATTGTGATCTTACATGGTCTGAAATATTGCATTTGCAAAGCAAAATAGGAACTCCTAGCAGATGAGAATAGCTCTTTATTTTTCTTTAATTCTCTATTAATCTTTTGAATTTTCTTTATTACAAGGGAGGTTGAAAATCTGTTACAGAATAAGCTACTCTTCTTTCATAAGCAAATGTTTTTGGAGCTTTTGTATGTAGAAAATGATTTTAGCTAA</gDNA_template>
            <first_frame> V  Y  L  V  C  I  I  K  N   : D  F  G  S  N  K  P  P  K  T  S  A  *  T  L  R  S  W  N  P  I  N  H  R  Q  P  P  S  I  A  V  N  R  H  E  F  I  Q  R  H  H  P  K  L  R  Q  P  S  P  P  I  P  S  E  P  S  P  N  S  S  S  F  K  P  N  F  L  L  F  P  T  I  P  R  R  S  P  L  Q  H  S  P  F  L  R  R  R  *  R  Q  R  R  *  *  *  Q  Q  R  V  F  F  F  Q  I  S  A  S  E  R  R  N  K  G  *  E  R  D  N  P  D  N  P  I  W  K  N  *  F  S  K  T  K  F  R  S  S  C  C  Y  W  *  T  S  Y  M  Y  R  V  S  *  G  Y  R  F  G  L  S  G  V  G  V  A  W  S  Y  H  A  F  *  *  G  K  W  V  F  T  *  I  H  L  W  E  L  L  *  K  S  *  W  *  A  Y  E  E  E  T  R  G  E  R  R  R  G  G  E  *  E  R  R  K  G  E  *  *  E  R  G  E  G  W  E  F  G  V  E  R  V  D  I  I  R  R  F  E  *  R  R  S  N  S  *  E  E  Y  E  C  W  L  Y  K  :  G  L  E  V  C  C  F  T  P  K  K  H  F  E  V  C  C  V  S  S  L  G  C  N  G  E  F  L  H  F  L  F  P  K  L  L  D  V  V  F  K  *  H  F  C  K  L  *  S  Y  M  V  *  N  I  A  F  A  K  Q  N  R  N  S  *  Q  M  R  I  A  L  Y  F  S  L  I  L  Y  *  S  F  E  F  S  L  L  Q  G  R  L  K  I  C  Y  R  I  S  Y  S  S  F  I  S  K  C  F  W  S  F  C  M  *  K  M  I  L  A   </first_frame>
            <second_frame>  F  I  W  F  V  L  L  K  M  :  I  L  V  P  I  N  P  Q  K  P  L  L  K  P  F  E  V  G  I  Q  S  T  T  A  N  H  R  Q  S  P  S  T  A  M  N  S  F  N  A  T  T  P  N  F  D  N  L  L  L  Q  S  L  V  N  R  L  Q  I  R  P  P  S  N  P  T  S  S  F  S  P  Q  S  L  E  D  L  L  F  N  T  L  P  F  S  D  E  D  E  D  N  D  D  D  D  N  N  N  E  S  S  S  S  K  S  Q  L  A  K  E  E  T  R  V  E  K  E  I  I  R  T  I  L  S  G  K  T  D  S  L  K  P  N  S  G  Q  A  V  A  I  G  E  H  H  I  C  I  G  F  H  E  D  T  G  S  D  Y  R  V  W  E  W  H  G  H  I  M  L  F  D  E  E  N  G  Y  S  P  E  Y  I  Y  G  N  Y  F  E  R  V  N  G  K  L  M  K  K  K  Q  E  E  K  E  E  E  E  E  S  E  K  E  E  K  E  S  D  E  K  E  E  K  V  G  N  L  G  L  R  E  L  I  S  S  G  D  S  N  N  E  G  R  I  L  R  R  N  M  N  A  G  S  T  R :   V  *  R  F  A  V  L  H  Q  R  N  I  L  R  F  A  A  Y  L  R  L  A  A  M  E  S  F  Y  I  S  F  F  P  S  Y  L  M  L  C  S  N  S  I  F  A  N  C  D  L  T  W  S  E  I  L  H  L  Q  S  K  I  G  T  P  S  R  *  E  *  L  F  I  F  L  *  F  S  I  N  L  L  N  F  L  Y  Y  K  G  G  *  K  S  V  T  E  *  A  T  L  L  S  *  A  N  V  F  G  A  F  V  C  R  K  *  F  *  L  </second_frame>
            <third_frame>   L  F  G  L  Y  Y  *  K  * :   F  W  F  Q  *  T  P  K  N  L  C  L  N  P  S  K  L  E  S  N  Q  P  P  P  T  T  V  N  R  R  Q  P  P  *  I  H  S  T  P  P  P  Q  T  S  T  T  F  S  S  N  P  *  *  T  V  S  K  F  V  L  L  Q  T  Q  L  P  P  F  P  H  N  P  S  K  I  S  S  S  T  L  S  L  S  P  T  K  M  K  T  T  T  M  M  I  T  T  T  S  L  L  L  P  N  L  S  *  R  K  K  K  Q  G  L  R  K  R  *  S  G  Q  S  Y  L  E  K  L  I  L  *  N  Q  I  Q  V  K  L  L  L  L  V  N  I  I  Y  V  S  G  F  M  R  I  Q  V  R  I  I  G  C  G  S  G  M  V  I  S  C  F  L  M  R  K  M  G  I  H  L  N  T  F  M  G  I  T  L  K  E  L  M  V  S  L  *  R  R  N  K  R  R  K  K  K  R  R  R  V  R  K  K  K  R  R  V  M  R  K  R  R  R  L  G  I  W  G  *  E  S  *  Y  H  Q  E  I  R  I  T  K  V  E  F  L  G  G  I  *  M  L  A  L  Q   : G  S  R  G  L  L  F  Y  T  K  E  T  F  *  G  L  L  R  I  F  A  W  L  Q  W  R  V  F  T  F  P  F  S  Q  A  T  *  C  C  V  Q  I  A  F  L  Q  I  V  I  L  H  G  L  K  Y  C  I  C  K  A  K  *  E  L  L  A  D  E  N  S  S  L  F  F  F  N  S  L  L  I  F  *  I  F  F  I  T  R  E  V  E  N  L  L  Q  N  K  L  L  F  F  H  K  Q  M  F  L  E  L  L  Y  V  E  N  D  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22899" stop="22873"/>
                    <exon start="21947" stop="21199"/>
                    <exon start="18004" stop="17998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWFVLLKMILVPINPQKPLLKPFEVGIQSTTANHRQSPSTAMNSFNATTPNFDNLLLQSLVNRLQIRPPSNPTSSFSPQSLEDLLFNTLPFSDEDEDNDDDDNNNESSSSKSQLAKEETRVEKEIIRTILSGKTDSLKPNSGQAVAIGEHHICIGFHEDTGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERVNGKLMKKKQEEKEEEEESEKEEKESDEKEEKVGNLGLRELISSGDSNNEGRILRRNMNAGSTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17997" stop="17803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFAVLHQRNILRFAAYLRLAAMESFYISFFPSYLMLCSNSIFANCDLTWSEILHLQSKIGTPSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26784" PGL_stop="22970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26784" e_stop="26661"/>
            <exon e_start="26579" e_stop="26525"/>
            <exon e_start="25489" e_stop="25345"/>
            <exon e_start="25239" e_stop="25211"/>
            <exon e_start="24775" e_stop="24710"/>
            <exon e_start="24626" e_stop="24519"/>
            <exon e_start="23939" e_stop="23874"/>
            <exon e_start="23802" e_stop="23682"/>
            <exon e_start="23527" e_stop="23446"/>
            <exon e_start="23317" e_stop="22970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.793" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.372" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.497" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="26784" e_stop="26661" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.793">
            <gDNA_intron_boundary i_start="26660" i_stop="26580" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26579" e_stop="26525" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.372">
            <gDNA_intron_boundary i_start="26524" i_stop="25490" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25489" e_stop="25345" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.962">
            <gDNA_intron_boundary i_start="25344" i_stop="25240" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25239" e_stop="25211" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25210" i_stop="24776" i_length="435"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24775" e_stop="24710" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.787" acc_prob="0.917">
            <gDNA_intron_boundary i_start="24709" i_stop="24627" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24626" e_stop="24519" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="24518" i_stop="23940" i_length="579"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23939" e_stop="23874" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23873" i_stop="23803" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="23802" e_stop="23682" e_length="121"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.497">
            <gDNA_intron_boundary i_start="23681" i_stop="23528" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23527" e_stop="23446" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23445" i_stop="23318" i_length="128"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="23317" e_stop="22970" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26784" stop="26661"/>
              <exon start="26579" stop="26525"/>
              <exon start="25489" stop="25345"/>
              <exon start="25239" stop="25211"/>
              <exon start="24775" stop="24710"/>
              <exon start="24626" stop="24519"/>
              <exon start="23939" stop="23874"/>
              <exon start="23802" stop="23682"/>
              <exon start="23527" stop="23446"/>
              <exon start="23317" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATGTTTTTTTTTTTTTTTAAAGCTTTGAGCTGTTTATTAAAGCTTTTGAAATGGCAGAGTATTAAGAGCGGGAAGAAGGAGAAGAACGCGTTTTACACCTTCATTACTCAACTTTCTAGG : ATCTGAGCTGTGTGCTTTCACCGACGGTCTTCTTTTTCTCCTTCGTTTGCTTCAG : CTAGCAATTATGGTTCCACCTATCGAAACTCAAGTCAAGTCTTCAGTGTCTCATAAGTTCTCCATTCCACCACTTAATGAAAGAATACTCTCTTCTATGACACGGAGATCAGTTGCAGCTCATCCTTGGCATGATCTCGAGATAG : GACCTAATGCTCCACAGATTTTCAATGTG : GTGATTGAGATCAGTAAGGGGAGCAAGGTGAAGTATGAACTAGACAAAAAAACTGGACTGATCAAG : GTTGATCGTGTTCTTTACTCATCAGTTGTATACCCCCATAACTATGGGTTCATCCCTCGTACACTCTGTGATGACAGTGACCCTCTGGATGTCTTAGTCATCATGCAG : GAACCTATTCTTCCGGGTTGCTTTCTCAGGGCTAAAGCAATTGGTCTTATGCCCATGATTGATCAG : GGAGAAAAGGACGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAATACAAGCACTATACTGATATCAATGAGCTGCCACCCCATCGTTTGGCTGAGATACGTCGCTTCTTTGAGGATT : ACAAGAAAAATGAGAACAAGGAAGTTGCTGTTAATGACTTTCTTCCCTCCGACAAAGCCTTTGAAGCAGTCCAGCATTCCCA : GGATCTGTATGCAGACTACATTGTGGAGAGCCTGAGGAGATGATAGTCTTTCCATCTTCCTCAAGTCGTGAATGACCGTCAACATTACATTTCTCATACTAATATACCATATTTTGTCTAATACTGCAAAGCACACAGTTATATACCATGTTGCATGGGCATATAACATGCTATATATATATATACTATGCTTGTATCATCTACTGTATGGGAAATTACTCTTCCATACATTACTTGATGATGACGAAAAGGAAACTTCACGTTTCCCCTGGTCAATTTTTGTATGATTTGAACTTATCTCTTAATTGTCCGATTTGTGAAATGGATTACAAACGAAGTTAAGTTTGT</gDNA_template>
            <first_frame> N  Y  V  F  F  F  F  *  S  F  E  L  F  I  K  A  F  E  M  A  E  Y  *  E  R  E  E  G  E  E  R  V  L  H  L  H  Y  S  T  F  *   : D  L  S  C  V  L  S  P  T  V  F  F  F  S  F  V  C  F  S :   *  Q  L  W  F  H  L  S  K  L  K  S  S  L  Q  C  L  I  S  S  P  F  H  H  L  M  K  E  Y  S  L  L  *  H  G  D  Q  L  Q  L  I  L  G  M  I  S  R  *  :  D  L  M  L  H  R  F  S  M  W :   *  L  R  S  V  R  G  A  R  *  S  M  N  *  T  K  K  L  D  *  S  R :   L  I  V  F  F  T  H  Q  L  Y  T  P  I  T  M  G  S  S  L  V  H  S  V  M  T  V  T  L  W  M  S  *  S  S  C  R :   N  L  F  F  R  V  A  F  S  G  L  K  Q  L  V  L  C  P  *  L  I  R :   E  K  R  T  T  R  *  L  L  S  V  L  M  I  L  N  T  S  T  I  L  I  S  M  S  C  H  P  I  V  W  L  R  Y  V  A  S  L  R  I  :  T  R  K  M  R  T  R  K  L  L  L  M  T  F  F  P  P  T  K  P  L  K  Q  S  S  I  P   : R  I  C  M  Q  T  T  L  W  R  A  *  G  D  D  S  L  S  I  F  L  K  S  *  M  T  V  N  I  T  F  L  I  L  I  Y  H  I  L  S  N  T  A  K  H  T  V  I  Y  H  V  A  W  A  Y  N  M  L  Y  I  Y  I  L  C  L  Y  H  L  L  Y  G  K  L  L  F  H  T  L  L  D  D  D  E  K  E  T  S  R  F  P  W  S  I  F  V  *  F  E  L  I  S  *  L  S  D  L  *  N  G  L  Q  T  K  L  S  L  </first_frame>
            <second_frame>  I  M  F  F  F  F  F  K  A  L  S  C  L  L  K  L  L  K  W  Q  S  I  K  S  G  K  K  E  K  N  A  F  Y  T  F  I  T  Q  L  S  R  :  I  *  A  V  C  F  H  R  R  S  S  F  S  P  S  F  A  S   : A  S  N  Y  G  S  T  Y  R  N  S  S  Q  V  F  S  V  S  *  V  L  H  S  T  T  *  *  K  N  T  L  F  Y  D  T  E  I  S  C  S  S  S  L  A  *  S  R  D  R :   T  *  C  S  T  D  F  Q  C   : G  D  *  D  Q  *  G  E  Q  G  E  V  *  T  R  Q  K  N  W  T  D  Q   : G  *  S  C  S  L  L  I  S  C  I  P  P  *  L  W  V  H  P  S  Y  T  L  *  *  Q  *  P  S  G  C  L  S  H  H  A   : G  T  Y  S  S  G  L  L  S  Q  G  *  S  N  W  S  Y  A  H  D  *  S   : G  R  K  G  R  Q  D  N  C  C  L  C  *  *  S  *  I  Q  A  L  Y  *  Y  Q  *  A  A  T  P  S  F  G  *  D  T  S  L  L  *  G  L :   Q  E  K  *  E  Q  G  S  C  C  *  *  L  S  S  L  R  Q  S  L  *  S  S  P  A  F  P  :  G  S  V  C  R  L  H  C  G  E  P  E  E  M  I  V  F  P  S  S  S  S  R  E  *  P  S  T  L  H  F  S  Y  *  Y  T  I  F  C  L  I  L  Q  S  T  Q  L  Y  T  M  L  H  G  H  I  T  C  Y  I  Y  I  Y  Y  A  C  I  I  Y  C  M  G  N  Y  S  S  I  H  Y  L  M  M  T  K  R  K  L  H  V  S  P  G  Q  F  L  Y  D  L  N  L  S  L  N  C  P  I  C  E  M  D  Y  K  R  S  *  V  C </second_frame>
            <third_frame>   L  C  F  F  F  F  L  K  L  *  A  V  Y  *  S  F  *  N  G  R  V  L  R  A  G  R  R  R  R  T  R  F  T  P  S  L  L  N  F  L  G :   S  E  L  C  A  F  T  D  G  L  L  F  L  L  R  L  L  Q  :  L  A  I  M  V  P  P  I  E  T  Q  V  K  S  S  V  S  H  K  F  S  I  P  P  L  N  E  R  I  L  S  S  M  T  R  R  S  V  A  A  H  P  W  H  D  L  E  I   : G  P  N  A  P  Q  I  F  N  V  :  V  I  E  I  S  K  G  S  K  V  K  Y  E  L  D  K  K  T  G  L  I  K  :  V  D  R  V  L  Y  S  S  V  V  Y  P  H  N  Y  G  F  I  P  R  T  L  C  D  D  S  D  P  L  D  V  L  V  I  M  Q  :  E  P  I  L  P  G  C  F  L  R  A  K  A  I  G  L  M  P  M  I  D  Q  :  G  E  K  D  D  K  I  I  A  V  C  A  D  D  P  E  Y  K  H  Y  T  D  I  N  E  L  P  P  H  R  L  A  E  I  R  R  F  F  E  D   : Y  K  K  N  E  N  K  E  V  A  V  N  D  F  L  P  S  D  K  A  F  E  A  V  Q  H  S  Q :   D  L  Y  A  D  Y  I  V  E  S  L  R  R  *  *  S  F  H  L  P  Q  V  V  N  D  R  Q  H  Y  I  S  H  T  N  I  P  Y  F  V  *  Y  C  K  A  H  S  Y  I  P  C  C  M  G  I  *  H  A  I  Y  I  Y  T  M  L  V  S  S  T  V  W  E  I  T  L  P  Y  I  T  *  *  *  R  K  G  N  F  T  F  P  L  V  N  F  C  M  I  *  T  Y  L  L  I  V  R  F  V  K  W  I  T  N  E  V  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26731" stop="26661"/>
                    <exon start="26579" stop="26525"/>
                    <exon start="25489" stop="25345"/>
                    <exon start="25239" stop="25211"/>
                    <exon start="24775" stop="24710"/>
                    <exon start="24626" stop="24519"/>
                    <exon start="23939" stop="23874"/>
                    <exon start="23802" stop="23682"/>
                    <exon start="23527" stop="23446"/>
                    <exon start="23317" stop="23275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGRVLRAGRRRRTRFTPSLLNFLGSELCAFTDGLLFLLRLLQLAIMVPPIETQVKSSVSHKFSIPPLNERILSSMTRRSVAAHPWHDLEIGPNAPQIFNVVIEISKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQEPILPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDINELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPSDKAFEAVQHSQDLYADYIVESLRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23215" stop="22976"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTIFCLILQSTQLYTMLHGHITCYIYIYYACIIYCMGNYSSIHYLMMTKRKLHVSPGQFLYDLNLSLNCPICEMDYKRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29429" PGL_stop="37589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29429" e_stop="29503"/>
            <exon e_start="29783" e_stop="29817"/>
            <exon e_start="31390" e_stop="31422"/>
            <exon e_start="31856" e_stop="31868"/>
            <exon e_start="32210" e_stop="32269"/>
            <exon e_start="32393" e_stop="32507"/>
            <exon e_start="34747" e_stop="34819"/>
            <exon e_start="35419" e_stop="35519"/>
            <exon e_start="35677" e_stop="35742"/>
            <exon e_start="36086" e_stop="36183"/>
            <exon e_start="36281" e_stop="36343"/>
            <exon e_start="36420" e_stop="36512"/>
            <exon e_start="36955" e_stop="37308"/>
            <exon e_start="37565" e_stop="37589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.281" acc_prob="0.848" e_score="0.000"/>
          <exon-intron don_prob="0.618" acc_prob="0.624" e_score="0.629"/>
          <exon-intron don_prob="0.021" acc_prob="0.000" e_score="0.545"/>
          <exon-intron don_prob="0.932" acc_prob="0.000" e_score="0.769"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="0.833"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.082" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.680"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.000">
            <gDNA_exon_boundary e_start="29429" e_stop="29503" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.281" acc_prob="0.848">
            <gDNA_intron_boundary i_start="29504" i_stop="29782" i_length="279"/>
          </intron>
          <exon e_serial="2" e_score="0.629">
            <gDNA_exon_boundary e_start="29783" e_stop="29817" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.618" acc_prob="0.624">
            <gDNA_intron_boundary i_start="29818" i_stop="31389" i_length="1572"/>
          </intron>
          <exon e_serial="3" e_score="0.545">
            <gDNA_exon_boundary e_start="31390" e_stop="31422" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.021" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31423" i_stop="31855" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="0.769">
            <gDNA_exon_boundary e_start="31856" e_stop="31868" e_length="13"/>
          </exon>
          <intron i_serial="4" don_prob="0.932" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31869" i_stop="32209" i_length="341"/>
          </intron>
          <exon e_serial="5" e_score="0.833">
            <gDNA_exon_boundary e_start="32210" e_stop="32269" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="32270" i_stop="32392" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32393" e_stop="32507" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="32508" i_stop="34746" i_length="2239"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34747" e_stop="34819" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="0.960">
            <gDNA_intron_boundary i_start="34820" i_stop="35418" i_length="599"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35419" e_stop="35519" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.905" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35520" i_stop="35676" i_length="157"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35677" e_stop="35742" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.082" acc_prob="0.955">
            <gDNA_intron_boundary i_start="35743" i_stop="36085" i_length="343"/>
          </intron>
          <exon e_serial="10" e_score="0.990">
            <gDNA_exon_boundary e_start="36086" e_stop="36183" e_length="98"/>
          </exon>
          <intron i_serial="10" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36184" i_stop="36280" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36281" e_stop="36343" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="36344" i_stop="36419" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="36420" e_stop="36512" e_length="93"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.699">
            <gDNA_intron_boundary i_start="36513" i_stop="36954" i_length="442"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="36955" e_stop="37308" e_length="354"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37309" i_stop="37564" i_length="256"/>
          </intron>
          <exon e_serial="14" e_score="0.680">
            <gDNA_exon_boundary e_start="37565" e_stop="37589" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29429" stop="29503"/>
              <exon start="29783" stop="29817"/>
              <exon start="31390" stop="31422"/>
              <exon start="31856" stop="31868"/>
              <exon start="32210" stop="32269"/>
              <exon start="32393" stop="32507"/>
              <exon start="34747" stop="34819"/>
              <exon start="35419" stop="35519"/>
              <exon start="35677" stop="35742"/>
              <exon start="36086" stop="36183"/>
              <exon start="36281" stop="36343"/>
              <exon start="36420" stop="36512"/>
              <exon start="36955" stop="37308"/>
              <exon start="37565" stop="37589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG : ATAAATAGGATATGGCGAGCGAAATGAGACACAAT : TTTGAATCTTAACGGGTTAACCGATAACCGATA : GAAAACAAAAAAG : ATCTCAAACATATTTTCATATCTTTCTCTCTCTTTCATTTTTCATTTTTCTCCGATCTCG : GGTTGGAGTTTCCCTTCATCATTTTCTGAGAAATAATTTCTAATGGCCGCTCCACCCGCTAGAGCTCGAGCTGATTACGATTACCTCATCAAACTCCTTTTGATCGGCGACAGCG : GTGTGGGTAAGAGTTGCCTTCTTTTACGTTTCTCAGATGGCTCCTTTACGACCAGTTTTATCACAACTATTGG : TATTGACTTCAAGATAAGGACCATAGAGCTTGACAGTAAGCGCATCAAACTGCAAATCTGGGATACTGCTGGTCAGGAGCGATTCCGAACAATTACAACTG : CTTACTACCGTGGAGCCATGGGTATATTGCTGGTGTATGATGTAACTGATGAGTCATCTTTTAACA : ACATCAGGAACTGGATAAGAAACATTGAACAGCATGCCTCCGACAATGTCAACAAAATACTGGTCGGCAACAAGGCTGACATGGATGAAAGCAAAAGG : GCTGTTCCTACATCCAAGGGCCAAGCACTTGCTGATGAATATGGCATTAAATTCTTTGAAACT : AGTGCCAAGACAAATATGAATGTTGAGGAGGTTTTCTTTTCCATAGCTCGGGATATAAAACAAAGGCTTGCCGAATCTGACTCAAAGGCTGAG : CCTCAGACCATCAGGATAAATCAACCGGACCAGGGAGCAGGATCTTCACAAGGCGCTCAAAAATCAGCTTGCTGTGGTTCTTAAAATATCGATTAACAGCAAATGAAGCCAGGATGATGGGAAATACATCCTTAAAATGACCATTTTAGTGGAAGGGCTGAAACTAATATCTTTTTTTTATTATTATAACATTCTTATTGTATTTCTCTCTTTACAGCTCTTCTCTTCCAATATCTATTTGTATTTGGTGGCAGCTCTTAGTATTTGCAAAAAAAATTATCAGTATATTTGCTCACCACTTTTTTGACTTATATAAATGAAGGGACAAACCTGCCTTCTAATGTTCTTGTACAA : AAAAGTCAAAATCAAGTAAACAAAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  :  I  N  R  I  W  R  A  K  *  D  T  I :   L  N  L  N  G  L  T  D  N  R  * :   K  T  K  K  :  I  S  N  I  F  S  Y  L  S  L  S  F  I  F  H  F  S  P  I  S  :  G  W  S  F  P  S  S  F  S  E  K  *  F  L  M  A  A  P  P  A  R  A  R  A  D  Y  D  Y  L  I  K  L  L  L  I  G  D  S   : G  V  G  K  S  C  L  L  L  R  F  S  D  G  S  F  T  T  S  F  I  T  T  I  G :   I  D  F  K  I  R  T  I  E  L  D  S  K  R  I  K  L  Q  I  W  D  T  A  G  Q  E  R  F  R  T  I  T  T   : A  Y  Y  R  G  A  M  G  I  L  L  V  Y  D  V  T  D  E  S  S  F  N   : N  I  R  N  W  I  R  N  I  E  Q  H  A  S  D  N  V  N  K  I  L  V  G  N  K  A  D  M  D  E  S  K  R  :  A  V  P  T  S  K  G  Q  A  L  A  D  E  Y  G  I  K  F  F  E  T  :  S  A  K  T  N  M  N  V  E  E  V  F  F  S  I  A  R  D  I  K  Q  R  L  A  E  S  D  S  K  A  E  :  P  Q  T  I  R  I  N  Q  P  D  Q  G  A  G  S  S  Q  G  A  Q  K  S  A  C  C  G  S  *  N  I  D  *  Q  Q  M  K  P  G  *  W  E  I  H  P  *  N  D  H  F  S  G  R  A  E  T  N  I  F  F  L  L  L  *  H  S  Y  C  I  S  L  F  T  A  L  L  F  Q  Y  L  F  V  F  G  G  S  S  *  Y  L  Q  K  K  L  S  V  Y  L  L  T  T  F  L  T  Y  I  N  E  G  T  N  L  P  S  N  V  L  V  Q  :  K  S  Q  N  Q  V  N  K  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R :   *  I  G  Y  G  E  R  N  E  T  Q   : F  *  I  L  T  G  *  P  I  T  D   : R  K  Q  K  R :   S  Q  T  Y  F  H  I  F  L  S  L  S  F  F  I  F  L  R  S  R :   V  G  V  S  L  H  H  F  L  R  N  N  F  *  W  P  L  H  P  L  E  L  E  L  I  T  I  T  S  S  N  S  F  *  S  A  T  A  :  V  W  V  R  V  A  F  F  Y  V  S  Q  M  A  P  L  R  P  V  L  S  Q  L  L   : V  L  T  S  R  *  G  P  *  S  L  T  V  S  A  S  N  C  K  S  G  I  L  L  V  R  S  D  S  E  Q  L  Q  L  :  L  T  T  V  E  P  W  V  Y  C  W  C  M  M  *  L  M  S  H  L  L  T  :  T  S  G  T  G  *  E  T  L  N  S  M  P  P  T  M  S  T  K  Y  W  S  A  T  R  L  T  W  M  K  A  K  G :   L  F  L  H  P  R  A  K  H  L  L  M  N  M  A  L  N  S  L  K  L :   V  P  R  Q  I  *  M  L  R  R  F  S  F  P  *  L  G  I  *  N  K  G  L  P  N  L  T  Q  R  L  S :   L  R  P  S  G  *  I  N  R  T  R  E  Q  D  L  H  K  A  L  K  N  Q  L  A  V  V  L  K  I  S  I  N  S  K  *  S  Q  D  D  G  K  Y  I  L  K  M  T  I  L  V  E  G  L  K  L  I  S  F  F  Y  Y  Y  N  I  L  I  V  F  L  S  L  Q  L  F  S  S  N  I  Y  L  Y  L  V  A  A  L  S  I  C  K  K  N  Y  Q  Y  I  C  S  P  L  F  *  L  I  *  M  K  G  Q  T  C  L  L  M  F  L  Y  K :   K  V  K  I  K  *  T  K </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : D  K  *  D  M  A  S  E  M  R  H  N  :  F  E  S  *  R  V  N  R  *  P  I  :  E  N  K  K   : D  L  K  H  I  F  I  S  F  S  L  F  H  F  S  F  F  S  D  L   : G  L  E  F  P  F  I  I  F  *  E  I  I  S  N  G  R  S  T  R  *  S  S  S  *  L  R  L  P  H  Q  T  P  F  D  R  R  Q  R :   C  G  *  E  L  P  S  F  T  F  L  R  W  L  L  Y  D  Q  F  Y  H  N  Y  W  :  Y  *  L  Q  D  K  D  H  R  A  *  Q  *  A  H  Q  T  A  N  L  G  Y  C  W  S  G  A  I  P  N  N  Y  N  C :   L  L  P  W  S  H  G  Y  I  A  G  V  *  C  N  *  *  V  I  F  *  Q :   H  Q  E  L  D  K  K  H  *  T  A  C  L  R  Q  C  Q  Q  N  T  G  R  Q  Q  G  *  H  G  *  K  Q  K   : G  C  S  Y  I  Q  G  P  S  T  C  *  *  I  W  H  *  I  L  *  N   : *  C  Q  D  K  Y  E  C  *  G  G  F  L  F  H  S  S  G  Y  K  T  K  A  C  R  I  *  L  K  G  *   : A  S  D  H  Q  D  K  S  T  G  P  G  S  R  I  F  T  R  R  S  K  I  S  L  L  W  F  L  K  Y  R  L  T  A  N  E  A  R  M  M  G  N  T  S  L  K  *  P  F  *  W  K  G  *  N  *  Y  L  F  F  I  I  I  T  F  L  L  Y  F  S  L  Y  S  S  S  L  P  I  S  I  C  I  W  W  Q  L  L  V  F  A  K  K  I  I  S  I  F  A  H  H  F  F  D  L  Y  K  *  R  D  K  P  A  F  *  C  S  C  T   : K  K  S  K  S  S  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32429" stop="32507"/>
                    <exon start="34747" stop="34819"/>
                    <exon start="35419" stop="35519"/>
                    <exon start="35677" stop="35742"/>
                    <exon start="36086" stop="36183"/>
                    <exon start="36281" stop="36343"/>
                    <exon start="36420" stop="36512"/>
                    <exon start="36955" stop="37038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAESDSKAEPQTIRINQPDQGAGSSQGAQKSACCGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37061" stop="37261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQDDGKYILKMTILVEGLKLISFFYYYNILIVFLSLQLFSSNIYLYLVAALSICKKNYQYICSPLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="55428" PGL_stop="49554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55428" e_stop="55393"/>
            <exon e_start="50293" e_stop="50055"/>
            <exon e_start="49731" e_stop="49718"/>
            <exon e_start="49573" e_stop="49554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.407" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="0.643"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55428" e_stop="55393" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.965">
            <gDNA_intron_boundary i_start="55392" i_stop="50294" i_length="5099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50293" e_stop="50055" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.407">
            <gDNA_intron_boundary i_start="50054" i_stop="49732" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="0.643">
            <gDNA_exon_boundary e_start="49731" e_stop="49718" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="49717" i_stop="49574" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="49573" e_stop="49554" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55428" stop="55393"/>
              <exon start="50293" stop="50055"/>
              <exon start="49731" stop="49718"/>
              <exon start="49573" stop="49554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGACGACTGTCATAAAGAGGAATCCATATGCATG : AAACTTCTATGGTTATGTAAATGACAGATTGACAACCAAGGTGCGTGGGTTGCCTCCTTAAAGAAACTGTGTTTTCTCTTTTGTTATTGGTCCTCATAGTTGATCACTCTATAATTGCGTTGATCCTTGGTAATAATTCTTGTCAAATAGTTATGGCTGTAAATTATATCTTTCCTTTGGTTCTAAATTTTGATGTAAATTAGTACATAAGTTTTTGCATGCCGGTTAATTCGATGAGA : AAAACATAATCAAT : AATGATTACAGGGAATCAAA</gDNA_template>
            <first_frame> S  D  D  C  H  K  E  E  S  I  C  M  :  K  L  L  W  L  C  K  *  Q  I  D  N  Q  G  A  W  V  A  S  L  K  K  L  C  F  L  F  C  Y  W  S  S  *  L  I  T  L  *  L  R  *  S  L  V  I  I  L  V  K  *  L  W  L  *  I  I  S  F  L  W  F  *  I  L  M  *  I  S  T  *  V  F  A  C  R  L  I  R  *  E :   K  H  N  Q   : *  *  L  Q  G  I  K </first_frame>
            <second_frame>  Q  T  T  V  I  K  R  N  P  Y  A  * :   N  F  Y  G  Y  V  N  D  R  L  T  T  K  V  R  G  L  P  P  *  R  N  C  V  F  S  F  V  I  G  P  H  S  *  S  L  Y  N  C  V  D  P  W  *  *  F  L  S  N  S  Y  G  C  K  L  Y  L  S  F  G  S  K  F  *  C  K  L  V  H  K  F  L  H  A  G  *  F  D  E   : K  N  I  I  N  :  N  D  Y  R  E  S   </second_frame>
            <third_frame>   R  R  L  S  *  R  G  I  H  M  H   : E  T  S  M  V  M  *  M  T  D  *  Q  P  R  C  V  G  C  L  L  K  E  T  V  F  S  L  L  L  L  V  L  I  V  D  H  S  I  I  A  L  I  L  G  N  N  S  C  Q  I  V  M  A  V  N  Y  I  F  P  L  V  L  N  F  D  V  N  *  Y  I  S  F  C  M  P  V  N  S  M  R  :  K  T  *  S  I :   M  I  T  G  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0088K02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54212" e_stop="53634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="54212" e_stop="53634" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54212" stop="53634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAGGATAAGCGCATAAATGTGGAACATAAAGGTTTAGGCAAGTGCATGTACACATTGAAGTATAAAATAAAAATACCTTTTCTTTTCGTATTGAATGATACTCCTTCCTTCCATTTATTTGACATGGAATTTGAAAATGCTAGTTTAATGTGCATATCATATTGGAAGGAGTTAAAGAAAATGATAAAATAGAAGTTGTGAAGTAATTTTAATGAAGCGAAATGAGTATTGAGGATTATATAGTTGACCCCAATAGGTTGGTTTGAAGTGTAATAGTTGTTTCTTTGTAAGTCAAAGATTTAGTTTTATAGGGGAGGTATGACATTAAATTTATGGTACATTAGTTCATTTATTTGAAATCTTCAATTTGGTGAATATGTTATGGGTTATCAGATATTAGAACTGAGTCAGTTTTTTGAGACGTCCAAACATGAATGTTTGTAGCATATAATATATTGACTAGTAATATACTACTCATTTTTGTAATGATAAAAGTGAGACTAAGATTACCTGTTAGTGCTTGAAATATGGCGGCTGCTAAATGGTGGAAGCTTCAATCTTCAAATTGCTATGTTC</gDNA_template>
            <first_frame> D  K  D  K  R  I  N  V  E  H  K  G  L  G  K  C  M  Y  T  L  K  Y  K  I  K  I  P  F  L  F  V  L  N  D  T  P  S  F  H  L  F  D  M  E  F  E  N  A  S  L  M  C  I  S  Y  W  K  E  L  K  K  M  I  K  *  K  L  *  S  N  F  N  E  A  K  *  V  L  R  I  I  *  L  T  P  I  G  W  F  E  V  *  *  L  F  L  C  K  S  K  I  *  F  Y  R  G  G  M  T  L  N  L  W  Y  I  S  S  F  I  *  N  L  Q  F  G  E  Y  V  M  G  Y  Q  I  L  E  L  S  Q  F  F  E  T  S  K  H  E  C  L  *  H  I  I  Y  *  L  V  I  Y  Y  S  F  L  *  *  *  K  *  D  *  D  Y  L  L  V  L  E  I  W  R  L  L  N  G  G  S  F  N  L  Q  I  A  M  F </first_frame>
            <second_frame>  I  R  I  S  A  *  M  W  N  I  K  V  *  A  S  A  C  T  H  *  S  I  K  *  K  Y  L  F  F  S  Y  *  M  I  L  L  P  S  I  Y  L  T  W  N  L  K  M  L  V  *  C  A  Y  H  I  G  R  S  *  R  K  *  *  N  R  S  C  E  V  I  L  M  K  R  N  E  Y  *  G  L  Y  S  *  P  Q  *  V  G  L  K  C  N  S  C  F  F  V  S  Q  R  F  S  F  I  G  E  V  *  H  *  I  Y  G  T  L  V  H  L  F  E  I  F  N  L  V  N  M  L  W  V  I  R  Y  *  N  *  V  S  F  L  R  R  P  N  M  N  V  C  S  I  *  Y  I  D  *  *  Y  T  T  H  F  C  N  D  K  S  E  T  K  I  T  C  *  C  L  K  Y  G  G  C  *  M  V  E  A  S  I  F  K  L  L  C   </second_frame>
            <third_frame>   *  G  *  A  H  K  C  G  T  *  R  F  R  Q  V  H  V  H  I  E  V  *  N  K  N  T  F  S  F  R  I  E  *  Y  S  F  L  P  F  I  *  H  G  I  *  K  C  *  F  N  V  H  I  I  L  E  G  V  K  E  N  D  K  I  E  V  V  K  *  F  *  *  S  E  M  S  I  E  D  Y  I  V  D  P  N  R  L  V  *  S  V  I  V  V  S  L  *  V  K  D  L  V  L  *  G  R  Y  D  I  K  F  M  V  H  *  F  I  Y  L  K  S  S  I  W  *  I  C  Y  G  L  S  D  I  R  T  E  S  V  F  *  D  V  Q  T  *  M  F  V  A  Y  N  I  L  T  S  N  I  L  L  I  F  V  M  I  K  V  R  L  R  L  P  V  S  A  *  N  M  A  A  A  K  W  W  K  L  Q  S  S  N  C  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54212" stop="54018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKDKRINVEHKGLGKCMYTLKYKIKIPFLFVLNDTPSFHLFDMEFENASLMCISYWKELKKMIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55072" e_stop="54365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="55072" e_stop="54365" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55072" stop="54365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTGCGAAGGAGACATACCGGCAGTAAGATTTTCACCTAATTGGAAGTGGTTGAGTCATTAGAGATATACAATTTGTTGAAAAGAGACTATAACATCTGTTAAGTGCTTAAAATGCTAACTTTAAACTACTAAGTCGACAATGCTTATGAAAGTGATTAAAGACATTTGTGATAGATGGGATGCTTATGATTTTAGTTTCTTAGTTGGAAAAATAGACAAAGATCTCTGCATATGTTTCAGGTTCACGTTTTCTGCATGCATCAACATTTATTATATCTTCACCCTAACCATATTTGAAAAGCAAGGAAAATAAGAAAATTATACTTGTCTTAGAAAGAAAAAGTTGTGCAGAGAAAGAGAGAAGAAAACAAAAAAAATACGTAAGGTTAGCTAGAGACATGTTCAATATAAATGGTGTTTCCTCCGTTATAAAAAATAAATAAAAAATTGGTACTTCATTTCAATTCAAATGACATAGTATGAATCAAGATAAAATTTAACTTAAAATCGGAGATGTTTGAAACTTGTGTTGCTATAAAAGCTTTTCATTAATGGCAAAATGAGAAGTTAACTGCTAGATATTTCCAAATATAAAAATGTGTCATTCTTTTCCTAACATATATGGATTAACAAGGAAATACTGTCACATAAGATTTTATCTGAAGGAGTAGATCTGTCCTTTAAAAAAAAAAAATTGTCAAAACT</gDNA_template>
            <first_frame> *  L  R  R  R  H  T  G  S  K  I  F  T  *  L  E  V  V  E  S  L  E  I  Y  N  L  L  K  R  D  Y  N  I  C  *  V  L  K  M  L  T  L  N  Y  *  V  D  N  A  Y  E  S  D  *  R  H  L  *  *  M  G  C  L  *  F  *  F  L  S  W  K  N  R  Q  R  S  L  H  M  F  Q  V  H  V  F  C  M  H  Q  H  L  L  Y  L  H  P  N  H  I  *  K  A  R  K  I  R  K  L  Y  L  S  *  K  E  K  V  V  Q  R  K  R  E  E  N  K  K  N  T  *  G  *  L  E  T  C  S  I  *  M  V  F  P  P  L  *  K  I  N  K  K  L  V  L  H  F  N  S  N  D  I  V  *  I  K  I  K  F  N  L  K  S  E  M  F  E  T  C  V  A  I  K  A  F  H  *  W  Q  N  E  K  L  T  A  R  Y  F  Q  I  *  K  C  V  I  L  F  L  T  Y  M  D  *  Q  G  N  T  V  T  *  D  F  I  *  R  S  R  S  V  L  *  K  K  K  I  V  K  T </first_frame>
            <second_frame>  D  C  E  G  D  I  P  A  V  R  F  S  P  N  W  K  W  L  S  H  *  R  Y  T  I  C  *  K  E  T  I  T  S  V  K  C  L  K  C  *  L  *  T  T  K  S  T  M  L  M  K  V  I  K  D  I  C  D  R  W  D  A  Y  D  F  S  F  L  V  G  K  I  D  K  D  L  C  I  C  F  R  F  T  F  S  A  C  I  N  I  Y  Y  I  F  T  L  T  I  F  E  K  Q  G  K  *  E  N  Y  T  C  L  R  K  K  K  L  C  R  E  R  E  K  K  T  K  K  I  R  K  V  S  *  R  H  V  Q  Y  K  W  C  F  L  R  Y  K  K  *  I  K  N  W  Y  F  I  S  I  Q  M  T  *  Y  E  S  R  *  N  L  T  *  N  R  R  C  L  K  L  V  L  L  *  K  L  F  I  N  G  K  M  R  S  *  L  L  D  I  S  K  Y  K  N  V  S  F  F  S  *  H  I  W  I  N  K  E  I  L  S  H  K  I  L  S  E  G  V  D  L  S  F  K  K  K  K  L  S  K   </second_frame>
            <third_frame>   T  A  K  E  T  Y  R  Q  *  D  F  H  L  I  G  S  G  *  V  I  R  D  I  Q  F  V  E  K  R  L  *  H  L  L  S  A  *  N  A  N  F  K  L  L  S  R  Q  C  L  *  K  *  L  K  T  F  V  I  D  G  M  L  M  I  L  V  S  *  L  E  K  *  T  K  I  S  A  Y  V  S  G  S  R  F  L  H  A  S  T  F  I  I  S  S  P  *  P  Y  L  K  S  K  E  N  K  K  I  I  L  V  L  E  R  K  S  C  A  E  K  E  R  R  K  Q  K  K  Y  V  R  L  A  R  D  M  F  N  I  N  G  V  S  S  V  I  K  N  K  *  K  I  G  T  S  F  Q  F  K  *  H  S  M  N  Q  D  K  I  *  L  K  I  G  D  V  *  N  L  C  C  Y  K  S  F  S  L  M  A  K  *  E  V  N  C  *  I  F  P  N  I  K  M  C  H  S  F  P  N  I  Y  G  L  T  R  K  Y  C  H  I  R  F  Y  L  K  E  *  I  C  P  L  K  K  K  N  C  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0088K02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50702" PGL_stop="53268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50702" e_stop="50933"/>
            <exon e_start="51081" e_stop="51143"/>
            <exon e_start="51223" e_stop="51339"/>
            <exon e_start="51495" e_stop="51735"/>
            <exon e_start="51816" e_stop="51977"/>
            <exon e_start="52462" e_stop="52613"/>
            <exon e_start="52685" e_stop="53268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.314" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.701" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50702" e_stop="50933" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.314">
            <gDNA_intron_boundary i_start="50934" i_stop="51080" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51081" e_stop="51143" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.954">
            <gDNA_intron_boundary i_start="51144" i_stop="51222" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51223" e_stop="51339" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51340" i_stop="51494" i_length="155"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51495" e_stop="51735" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51736" i_stop="51815" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51816" e_stop="51977" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.701">
            <gDNA_intron_boundary i_start="51978" i_stop="52461" i_length="484"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52462" e_stop="52613" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52614" i_stop="52684" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="0.966">
            <gDNA_exon_boundary e_start="52685" e_stop="53268" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50702" stop="50933"/>
              <exon start="51081" stop="51143"/>
              <exon start="51223" stop="51339"/>
              <exon start="51495" stop="51735"/>
              <exon start="51816" stop="51977"/>
              <exon start="52462" stop="52613"/>
              <exon start="52685" stop="53268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCTTTCAAAGAGGTTGAGCTTTGTTGAAAGTACACAATGGAGGCAGTACGTGAACTCTACAACAGAGCCAAACCCTTTCTTGCAGTCATTTTTCTCCAATTTGGGCTAGCAGGCATGGATATTCTCACCAAAGTGGCCTTGAATGAAGGAATGAGTAACTATGTATTTGTTGTGTACCGCCATGCAGTTGCCACTTTGGTTATTGCTCCTTTTGCAATAATTCTAGACAA : GAAAGTAAGACCAAAGATGACCCCCTCAATATTTGCTAAGTTGGTACTTCTTAGCTTACTGGA : GCCTGTCATCGACCAGAATCTCTACTCTATTGGCCTGAAATACACAACAGCAACGTTTGCAGCTGCAATGTGCAACATTCTTCCTGCCATTACTTTTATAATGGCCTGGATATTCAG : GCTTGAGAAGGTGAAGCTTACAAGCATCCGCAGCCAAGCCAAAATAGTTGGGACTGTTGCCACAGTGGCAGGAGCCATGATCATGACACTGGTACGAGGTCCAATAGTTGAACTATTTTGGACAACAGGAAATGCCGGTCATAACTCTCAAAGTGGTGGGTTAAATCTAAGCCATGCTATCAAAGGTTCCATCATGATAACAATTGGGTGCTTCAGTTGGGCTGCATTCATGATTTTGCAG : GCAATCACACTGCGGACTTATCCCGCTGAGCTCTCGCTCACTGCTTGGATATGCTTGTTGGGAACAACTGAGGGAGCCATAGTAGCAATGGTAATGGAGAGAGGAAAACCTGCAGTGTGGGCCATAAACTGGGACTCTAAGTTTCTTGCAGCTGTATACAGT : GGAATATTCTGTTCAGGACTCGCGTATTATATTCAAGGAGTCATAATGAAAGACAGGGGCCCTGTTTTTGTCACAGCTTTCAATCCATTAAGCATGGTTATTGTAGCTGTATTGAGTACAATTATTCTACGTGAACAACTGAACCTGGGAAG : GGTACTCGGTGCTGTTGTGATTGTTGTTGGACTTTACATTGTCCTATGGGGTAAAAGTAAGGATCACAAATCTCCATCAATCGATGAACAAGCAATACCAACACATGAAACCAAAATTGACAAGGAACCTTTTAGTCAGACAGTTACCCACATCAATTCATCGAAAGGAACAACTGCTACCGAAGATGAAGGCATATAATGATTTTCTATTTGAGGCTTTGTCTTCCAAATTCCAAAAGGAGGTCTGGCTATAGAGCAGCCTCTTCATCTAAGAAATGAGCTCCTCTTCAGCTGCATCTTGAATTAGTAATTATTAGTTAAAGATGGTTTACAGCGTGTGGCCAAATTTAAGCCAGTTAAACCACCATTTTTGGGAACTTCTTTCTGAACTATAGAATGACTAAACTATGTTAAGCCTATAGGCCTTTTCTTTTGGTTTTTAATCGATATTAAACCATGTATAATAAATTATAGTAACAACAATAATCATGCCCAGACATGTGGATAAGTTGGTTCTTTAACTTCAGATCTACAATCTAAAGTTCTATCTGGAAATATTTCCTGTGTTAAAAGATCAGTGTTTG</gDNA_template>
            <first_frame> V  L  S  K  R  L  S  F  V  E  S  T  Q  W  R  Q  Y  V  N  S  T  T  E  P  N  P  F  L  Q  S  F  F  S  N  L  G  *  Q  A  W  I  F  S  P  K  W  P  *  M  K  E  *  V  T  M  Y  L  L  C  T  A  M  Q  L  P  L  W  L  L  L  L  L  Q  *  F  *  T   : R  K  *  D  Q  R  *  P  P  Q  Y  L  L  S  W  Y  F  L  A  Y  W   : S  L  S  S  T  R  I  S  T  L  L  A  *  N  T  Q  Q  Q  R  L  Q  L  Q  C  A  T  F  F  L  P  L  L  L  *  W  P  G  Y  S   : G  L  R  R  *  S  L  Q  A  S  A  A  K  P  K  *  L  G  L  L  P  Q  W  Q  E  P  *  S  *  H  W  Y  E  V  Q  *  L  N  Y  F  G  Q  Q  E  M  P  V  I  T  L  K  V  V  G  *  I  *  A  M  L  S  K  V  P  S  *  *  Q  L  G  A  S  V  G  L  H  S  *  F  C  R :   Q  S  H  C  G  L  I  P  L  S  S  R  S  L  L  G  Y  A  C  W  E  Q  L  R  E  P  *  *  Q  W  *  W  R  E  E  N  L  Q  C  G  P  *  T  G  T  L  S  F  L  Q  L  Y  T  V :   E  Y  S  V  Q  D  S  R  I  I  F  K  E  S  *  *  K  T  G  A  L  F  L  S  Q  L  S  I  H  *  A  W  L  L  *  L  Y  *  V  Q  L  F  Y  V  N  N  *  T  W  E   : G  Y  S  V  L  L  *  L  L  L  D  F  T  L  S  Y  G  V  K  V  R  I  T  N  L  H  Q  S  M  N  K  Q  Y  Q  H  M  K  P  K  L  T  R  N  L  L  V  R  Q  L  P  T  S  I  H  R  K  E  Q  L  L  P  K  M  K  A  Y  N  D  F  L  F  E  A  L  S  S  K  F  Q  K  E  V  W  L  *  S  S  L  F  I  *  E  M  S  S  S  S  A  A  S  *  I  S  N  Y  *  L  K  M  V  Y  S  V  W  P  N  L  S  Q  L  N  H  H  F  W  E  L  L  S  E  L  *  N  D  *  T  M  L  S  L  *  A  F  S  F  G  F  *  S  I  L  N  H  V  *  *  I  I  V  T  T  I  I  M  P  R  H  V  D  K  L  V  L  *  L  Q  I  Y  N  L  K  F  Y  L  E  I  F  P  V  L  K  D  Q  C  L </first_frame>
            <second_frame>  C  F  Q  R  G  *  A  L  L  K  V  H  N  G  G  S  T  *  T  L  Q  Q  S  Q  T  L  S  C  S  H  F  S  P  I  W  A  S  R  H  G  Y  S  H  Q  S  G  L  E  *  R  N  E  *  L  C  I  C  C  V  P  P  C  S  C  H  F  G  Y  C  S  F  C  N  N  S  R  Q  :  E  S  K  T  K  D  D  P  L  N  I  C  *  V  G  T  S  *  L  T  G  :  A  C  H  R  P  E  S  L  L  Y  W  P  E  I  H  N  S  N  V  C  S  C  N  V  Q  H  S  S  C  H  Y  F  Y  N  G  L  D  I  Q  :  A  *  E  G  E  A  Y  K  H  P  Q  P  S  Q  N  S  W  D  C  C  H  S  G  R  S  H  D  H  D  T  G  T  R  S  N  S  *  T  I  L  D  N  R  K  C  R  S  *  L  S  K  W  W  V  K  S  K  P  C  Y  Q  R  F  H  H  D  N  N  W  V  L  Q  L  G  C  I  H  D  F  A   : G  N  H  T  A  D  L  S  R  *  A  L  A  H  C  L  D  M  L  V  G  N  N  *  G  S  H  S  S  N  G  N  G  E  R  K  T  C  S  V  G  H  K  L  G  L  *  V  S  C  S  C  I  Q   : W  N  I  L  F  R  T  R  V  L  Y  S  R  S  H  N  E  R  Q  G  P  C  F  C  H  S  F  Q  S  I  K  H  G  Y  C  S  C  I  E  Y  N  Y  S  T  *  T  T  E  P  G  K  :  G  T  R  C  C  C  D  C  C  W  T  L  H  C  P  M  G  *  K  *  G  S  Q  I  S  I  N  R  *  T  S  N  T  N  T  *  N  Q  N  *  Q  G  T  F  *  S  D  S  Y  P  H  Q  F  I  E  R  N  N  C  Y  R  R  *  R  H  I  M  I  F  Y  L  R  L  C  L  P  N  S  K  R  R  S  G  Y  R  A  A  S  S  S  K  K  *  A  P  L  Q  L  H  L  E  L  V  I  I  S  *  R  W  F  T  A  C  G  Q  I  *  A  S  *  T  T  I  F  G  N  F  F  L  N  Y  R  M  T  K  L  C  *  A  Y  R  P  F  L  L  V  F  N  R  Y  *  T  M  Y  N  K  L  *  *  Q  Q  *  S  C  P  D  M  W  I  S  W  F  F  N  F  R  S  T  I  *  S  S  I  W  K  Y  F  L  C  *  K  I  S  V   </second_frame>
            <third_frame>   A  F  K  E  V  E  L  C  *  K  Y  T  M  E  A  V  R  E  L  Y  N  R  A  K  P  F  L  A  V  I  F  L  Q  F  G  L  A  G  M  D  I  L  T  K  V  A  L  N  E  G  M  S  N  Y  V  F  V  V  Y  R  H  A  V  A  T  L  V  I  A  P  F  A  I  I  L  D  K :   K  V  R  P  K  M  T  P  S  I  F  A  K  L  V  L  L  S  L  L  E :   P  V  I  D  Q  N  L  Y  S  I  G  L  K  Y  T  T  A  T  F  A  A  A  M  C  N  I  L  P  A  I  T  F  I  M  A  W  I  F  R :   L  E  K  V  K  L  T  S  I  R  S  Q  A  K  I  V  G  T  V  A  T  V  A  G  A  M  I  M  T  L  V  R  G  P  I  V  E  L  F  W  T  T  G  N  A  G  H  N  S  Q  S  G  G  L  N  L  S  H  A  I  K  G  S  I  M  I  T  I  G  C  F  S  W  A  A  F  M  I  L  Q  :  A  I  T  L  R  T  Y  P  A  E  L  S  L  T  A  W  I  C  L  L  G  T  T  E  G  A  I  V  A  M  V  M  E  R  G  K  P  A  V  W  A  I  N  W  D  S  K  F  L  A  A  V  Y  S  :  G  I  F  C  S  G  L  A  Y  Y  I  Q  G  V  I  M  K  D  R  G  P  V  F  V  T  A  F  N  P  L  S  M  V  I  V  A  V  L  S  T  I  I  L  R  E  Q  L  N  L  G  R :   V  L  G  A  V  V  I  V  V  G  L  Y  I  V  L  W  G  K  S  K  D  H  K  S  P  S  I  D  E  Q  A  I  P  T  H  E  T  K  I  D  K  E  P  F  S  Q  T  V  T  H  I  N  S  S  K  G  T  T  A  T  E  D  E  G  I  *  *  F  S  I  *  G  F  V  F  Q  I  P  K  G  G  L  A  I  E  Q  P  L  H  L  R  N  E  L  L  F  S  C  I  L  N  *  *  L  L  V  K  D  G  L  Q  R  V  A  K  F  K  P  V  K  P  P  F  L  G  T  S  F  *  T  I  E  *  L  N  Y  V  K  P  I  G  L  F  F  W  F  L  I  D  I  K  P  C  I  I  N  Y  S  N  N  N  N  H  A  Q  T  C  G  *  V  G  S  L  T  S  D  L  Q  S  K  V  L  S  G  N  I  S  C  V  K  R  S  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50731" stop="50933"/>
                    <exon start="51081" stop="51143"/>
                    <exon start="51223" stop="51339"/>
                    <exon start="51495" stop="51735"/>
                    <exon start="51816" stop="51977"/>
                    <exon start="52462" stop="52613"/>
                    <exon start="52685" stop="52883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTMEAVRELYNRAKPFLAVIFLQFGLAGMDILTKVALNEGMSNYVFVVYRHAVATLVIAPFAIILDKKVRPKMTPSIFAKLVLLSLLEPVIDQNLYSIGLKYTTATFAAAMCNILPAITFIMAWIFRLEKVKLTSIRSQAKIVGTVATVAGAMIMTLVRGPIVELFWTTGNAGHNSQSGGLNLSHAIKGSIMITIGCFSWAAFMILQAITLRTYPAELSLTAWICLLGTTEGAIVAMVMERGKPAVWAINWDSKFLAAVYSGIFCSGLAYYIQGVIMKDRGPVFVTAFNPLSMVIVAVLSTIILREQLNLGRVLGAVVIVVGLYIVLWGKSKDHKSPSIDEQAIPTHETKIDKEPFSQTVTHINSSKGTTATEDEGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56585" PGL_stop="55456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56585" e_stop="55994"/>
            <exon e_start="55914" e_stop="55846"/>
            <exon e_start="55760" e_stop="55562"/>
            <exon e_start="55482" e_stop="55456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.340" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56585" e_stop="55994" e_length="592"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.340">
            <gDNA_intron_boundary i_start="55993" i_stop="55915" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55914" e_stop="55846" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.976">
            <gDNA_intron_boundary i_start="55845" i_stop="55761" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55760" e_stop="55562" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.973">
            <gDNA_intron_boundary i_start="55561" i_stop="55483" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55482" e_stop="55456" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56585" stop="55994"/>
              <exon start="55914" stop="55846"/>
              <exon start="55760" stop="55562"/>
              <exon start="55482" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAGCAGAGAGGATGATAGCACAATATCAGTGAGTCACTCATTCAATGACAATAATACTGCCATATCAATGGGTCAGCAATTCGGTAATGATGATAGCAATATTACATCAGTTGGACAAACTATTAATACGATGGCTGACACCAATCCACCTATTAGCCACTGCTACAGCAAAGTCAATGACAATGCCATATCAGTGAGTCAGACCTATAGCAAAGTGGAAAACAATAATTTGTCAATGAGCCAATCTTTTGGCAATGGAGAAAGCAATATCATATCCTTTGGTGGATTCAATGACGATGACGATATAAATTCTTCTGGAAGGCTGATTTGCAGTTATGACTTATTAATGAGTCAGTCTTCAGGCCAAAAATCAGATATTGTGACTGGAAAGCGATTGGTTGAGTCAAATGCGGATACAGTTACAACTGTTGCTCAAATGGCTGGCAGTAAGGAATTTATTTCCAAAAAGGAGGAGCAGAAAGCAACTAAAAAGCCTCCTTCGAACAGTTTCCCTTCAAATGTGAGAAGCTTGCTCTCAACTGGTATGTTAGATGGAGTACCTGTCAAGTATATAGCTTGGTCCAGAGAG : AAGGAGCTCCGTGGTATTATAAAAGGCTCTGGTTACCTCTGTGGCTGTCAGTCATGTAATTTTTCCAAG : GCAATTAACGCTTATGAGTTTGAGCGACATGCTGGTTGTAAGACAAAACACCCTAATAATCATATATACTTTGAGAATGGGAAGACGATCTACGGAATTGTTCAGGAGCTCAGGAACACACCTCAGGATTTACTATTTGAAGTTATTCAGACAATTACTGGATCATCCATTAACCAAAAATCATTTCGCATCTGGAAAG : AATCTTTTCTAGCTGCGACACGTGAAC</gDNA_template>
            <first_frame> F  *  Q  R  G  *  *  H  N  I  S  E  S  L  I  Q  *  Q  *  Y  C  H  I  N  G  S  A  I  R  *  *  *  *  Q  Y  Y  I  S  W  T  N  Y  *  Y  D  G  *  H  Q  S  T  Y  *  P  L  L  Q  Q  S  Q  *  Q  C  H  I  S  E  S  D  L  *  Q  S  G  K  Q  *  F  V  N  E  P  I  F  W  Q  W  R  K  Q  Y  H  I  L  W  W  I  Q  *  R  *  R  Y  K  F  F  W  K  A  D  L  Q  L  *  L  I  N  E  S  V  F  R  P  K  I  R  Y  C  D  W  K  A  I  G  *  V  K  C  G  Y  S  Y  N  C  C  S  N  G  W  Q  *  G  I  Y  F  Q  K  G  G  A  E  S  N  *  K  A  S  F  E  Q  F  P  F  K  C  E  K  L  A  L  N  W  Y  V  R  W  S  T  C  Q  V  Y  S  L  V  Q  R   : E  G  A  P  W  Y  Y  K  R  L  W  L  P  L  W  L  S  V  M  *  F  F  Q   : G  N  *  R  L  *  V  *  A  T  C  W  L  *  D  K  T  P  *  *  S  Y  I  L  *  E  W  E  D  D  L  R  N  C  S  G  A  Q  E  H  T  S  G  F  T  I  *  S  Y  S  D  N  Y  W  I  I  H  *  P  K  I  I  S  H  L  E  R :   I  F  S  S  C  D  T  *   </first_frame>
            <second_frame>  F  S  R  E  D  D  S  T  I  S  V  S  H  S  F  N  D  N  N  T  A  I  S  M  G  Q  Q  F  G  N  D  D  S  N  I  T  S  V  G  Q  T  I  N  T  M  A  D  T  N  P  P  I  S  H  C  Y  S  K  V  N  D  N  A  I  S  V  S  Q  T  Y  S  K  V  E  N  N  N  L  S  M  S  Q  S  F  G  N  G  E  S  N  I  I  S  F  G  G  F  N  D  D  D  D  I  N  S  S  G  R  L  I  C  S  Y  D  L  L  M  S  Q  S  S  G  Q  K  S  D  I  V  T  G  K  R  L  V  E  S  N  A  D  T  V  T  T  V  A  Q  M  A  G  S  K  E  F  I  S  K  K  E  E  Q  K  A  T  K  K  P  P  S  N  S  F  P  S  N  V  R  S  L  L  S  T  G  M  L  D  G  V  P  V  K  Y  I  A  W  S  R  E  :  K  E  L  R  G  I  I  K  G  S  G  Y  L  C  G  C  Q  S  C  N  F  S  K  :  A  I  N  A  Y  E  F  E  R  H  A  G  C  K  T  K  H  P  N  N  H  I  Y  F  E  N  G  K  T  I  Y  G  I  V  Q  E  L  R  N  T  P  Q  D  L  L  F  E  V  I  Q  T  I  T  G  S  S  I  N  Q  K  S  F  R  I  W  K   : E  S  F  L  A  A  T  R  E  </second_frame>
            <third_frame>   L  A  E  R  M  I  A  Q  Y  Q  *  V  T  H  S  M  T  I  I  L  P  Y  Q  W  V  S  N  S  V  M  M  I  A  I  L  H  Q  L  D  K  L  L  I  R  W  L  T  P  I  H  L  L  A  T  A  T  A  K  S  M  T  M  P  Y  Q  *  V  R  P  I  A  K  W  K  T  I  I  C  Q  *  A  N  L  L  A  M  E  K  A  I  S  Y  P  L  V  D  S  M  T  M  T  I  *  I  L  L  E  G  *  F  A  V  M  T  Y  *  *  V  S  L  Q  A  K  N  Q  I  L  *  L  E  S  D  W  L  S  Q  M  R  I  Q  L  Q  L  L  L  K  W  L  A  V  R  N  L  F  P  K  R  R  S  R  K  Q  L  K  S  L  L  R  T  V  S  L  Q  M  *  E  A  C  S  Q  L  V  C  *  M  E  Y  L  S  S  I  *  L  G  P  E  R :   R  S  S  V  V  L  *  K  A  L  V  T  S  V  A  V  S  H  V  I  F  P  R :   Q  L  T  L  M  S  L  S  D  M  L  V  V  R  Q  N  T  L  I  I  I  Y  T  L  R  M  G  R  R  S  T  E  L  F  R  S  S  G  T  H  L  R  I  Y  Y  L  K  L  F  R  Q  L  L  D  H  P  L  T  K  N  H  F  A  S  G  K  :  N  L  F  *  L  R  H  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56584" stop="55994"/>
                    <exon start="55914" stop="55846"/>
                    <exon start="55760" stop="55562"/>
                    <exon start="55482" stop="55457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSREDDSTISVSHSFNDNNTAISMGQQFGNDDSNITSVGQTINTMADTNPPISHCYSKVNDNAISVSQTYSKVENNNLSMSQSFGNGESNIISFGGFNDDDDINSSGRLICSYDLLMSQSSGQKSDIVTGKRLVESNADTVTTVAQMAGSKEFISKKEEQKATKKPPSNSFPSNVRSLLSTGMLDGVPVKYIAWSREKELRGIIKGSGYLCGCQSCNFSKAINAYEFERHAGCKTKHPNNHIYFENGKTIYGIVQELRNTPQDLLFEVIQTITGSSINQKSFRIWKESFLAATRE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="59242" PGL_stop="56963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59242" e_stop="59149"/>
            <exon e_start="57369" e_stop="56963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59242" e_stop="59149" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59148" i_stop="57370" i_length="1779"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57369" e_stop="56963" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59242" stop="59149"/>
              <exon start="57369" stop="56963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACAGTTTACCGGAGAGGTACAATTCTAATTTTCCGATCAAGACTTTGTCGGAGACGGAACACTGGAAATACTTCGATCGGTACCTATATAT : ATCTTGCAGTTCTGAGTGGCCAAGTGAATCCACAGGAAATGGCTTATGATAACTCATCCACGCTTGAGCCCAAACGTTCCCATCAATGGTTCATGGATGGCATCGAGCCTGAATTGCTTCCCAACAAGAAGCAAGCCATTGAAGTACCTAATCACAGTTCATTCTCTGGACTTTTAAGTTCCAATATTGCCCCCTGGATGAACACTCCAGGTTTCCACTCAGTATCAGGCCAATATGCAGAAAGACAGTTTGACAATGACAGCGCTAGATCGCTCAGCTTTGATGACAACAGTGTTCCATCCGTTGGCATAGGCAACATGAATATGTCTAGAAAGGTGATGGAAGATCCATTTGGAAGTGATTCCTCATTTGGTTTATCCATATCCCATACACTGGAGGATCATAAA</gDNA_template>
            <first_frame> V  T  V  Y  R  R  G  T  I  L  I  F  R  S  R  L  C  R  R  R  N  T  G  N  T  S  I  G  T  Y  I   : Y  L  A  V  L  S  G  Q  V  N  P  Q  E  M  A  Y  D  N  S  S  T  L  E  P  K  R  S  H  Q  W  F  M  D  G  I  E  P  E  L  L  P  N  K  K  Q  A  I  E  V  P  N  H  S  S  F  S  G  L  L  S  S  N  I  A  P  W  M  N  T  P  G  F  H  S  V  S  G  Q  Y  A  E  R  Q  F  D  N  D  S  A  R  S  L  S  F  D  D  N  S  V  P  S  V  G  I  G  N  M  N  M  S  R  K  V  M  E  D  P  F  G  S  D  S  S  F  G  L  S  I  S  H  T  L  E  D  H  K </first_frame>
            <second_frame>  L  Q  F  T  G  E  V  Q  F  *  F  S  D  Q  D  F  V  G  D  G  T  L  E  I  L  R  S  V  P  I  Y  :  I  L  Q  F  *  V  A  K  *  I  H  R  K  W  L  M  I  T  H  P  R  L  S  P  N  V  P  I  N  G  S  W  M  A  S  S  L  N  C  F  P  T  R  S  K  P  L  K  Y  L  I  T  V  H  S  L  D  F  *  V  P  I  L  P  P  G  *  T  L  Q  V  S  T  Q  Y  Q  A  N  M  Q  K  D  S  L  T  M  T  A  L  D  R  S  A  L  M  T  T  V  F  H  P  L  A  *  A  T  *  I  C  L  E  R  *  W  K  I  H  L  E  V  I  P  H  L  V  Y  P  Y  P  I  H  W  R  I  I   </second_frame>
            <third_frame>   Y  S  L  P  E  R  Y  N  S  N  F  P  I  K  T  L  S  E  T  E  H  W  K  Y  F  D  R  Y  L  Y  I :   S  C  S  S  E  W  P  S  E  S  T  G  N  G  L  *  *  L  I  H  A  *  A  Q  T  F  P  S  M  V  H  G  W  H  R  A  *  I  A  S  Q  Q  E  A  S  H  *  S  T  *  S  Q  F  I  L  W  T  F  K  F  Q  Y  C  P  L  D  E  H  S  R  F  P  L  S  I  R  P  I  C  R  K  T  V  *  Q  *  Q  R  *  I  A  Q  L  *  *  Q  Q  C  S  I  R  W  H  R  Q  H  E  Y  V  *  K  G  D  G  R  S  I  W  K  *  F  L  I  W  F  I  H  I  P  Y  T  G  G  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59242" stop="59149"/>
                    <exon start="57369" stop="56963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTVYRRGTILIFRSRLCRRRNTGNTSIGTYIYLAVLSGQVNPQEMAYDNSSTLEPKRSHQWFMDGIEPELLPNKKQAIEVPNHSSFSGLLSSNIAPWMNTPGFHSVSGQYAERQFDNDSARSLSFDDNSVPSVGIGNMNMSRKVMEDPFGSDSSFGLSISHTLEDHK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80079" PGL_stop="85366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80079" e_stop="80131"/>
            <exon e_start="81047" e_stop="81114"/>
            <exon e_start="81656" e_stop="81804"/>
            <exon e_start="81892" e_stop="81948"/>
            <exon e_start="82186" e_stop="82224"/>
            <exon e_start="82315" e_stop="82628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80079" e_stop="80131" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80132" i_stop="81046" i_length="915"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81047" e_stop="81114" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="81115" i_stop="81655" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81656" e_stop="81804" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81805" i_stop="81891" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81892" e_stop="81948" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="81949" i_stop="82185" i_length="237"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82186" e_stop="82224" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82225" i_stop="82314" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82315" e_stop="82628" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80079" stop="80131"/>
              <exon start="81047" stop="81114"/>
              <exon start="81656" stop="81804"/>
              <exon start="81892" stop="81948"/>
              <exon start="82186" stop="82224"/>
              <exon start="82315" stop="82628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCCCTCTTATCTGCGGCTAGGGTTTTAGCTCAGTCTTCTCCTCACAAG : ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</gDNA_template>
            <first_frame> F  F  P  S  Y  L  R  L  G  F  *  L  S  L  L  L  T  R :   *  M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E  G  F  V  E  L  T  F  Q  C  S  D  I  R  F  C  L  S  F  *  V  F  Y  F  I  L  L  *  H  I  S  K  E  F  L  N  A  F  N  S  N  L  L  C  P  S   </first_frame>
            <second_frame>  F  F  P  L  I  C  G  *  G  F  S  S  V  F  S  S  Q   : D  E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  V  L  L  N  L  L  S  S  V  L  I  L  D  F  A  L  A  F  E  C  S  I  S  F  Y  C  D  T  S  Q  K  N  S  *  M  L  L  I  V  I  Y  F  A  L  Q  </second_frame>
            <third_frame>   F  S  L  L  S  A  A  R  V  L  A  Q  S  S  P  H  K  :  M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  R  F  C  *  T  Y  F  P  V  F  *  Y  *  I  L  P  *  L  L  S  V  L  F  H  S  I  V  T  H  L  K  R  I  L  K  C  F  *  *  *  S  T  L  P  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80081" stop="80131"/>
                    <exon start="81047" stop="81114"/>
                    <exon start="81656" stop="81804"/>
                    <exon start="81892" stop="81948"/>
                    <exon start="82186" stop="82224"/>
                    <exon start="82315" stop="82490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLLSAARVLAQSSPHKMNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83517" e_stop="84209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="83517" e_stop="84209" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83517" stop="84209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</gDNA_template>
            <first_frame> *  K  K  S  I  L  Y  *  L  Q  L  H  S  R  K  *  V  V  A  M  T  Y  L  H  P  I  G  S  C  G  T  *  R  S  H  N  I  Q  N  S  E  Y  C  *  N  S  C  S  H  I  F  S  *  Y  Q  L  A  *  L  K  L  V  Y  Y  Y  T  G  L  Q  F  C  T  L  Y  F  V  A  K  S  T  A  A  I  F  W  L  S  S  *  N  *  K  F  I  L  V  I  D  S  H  M  L  P  L  F  A  S  L  S  T  I  S  T  T  V  T  S  N  V  V  I  I  V  I  A  R  W  S  I  L  F  R  A  *  R  L  L  T  P  I  N  R  *  F  L  E  G  W  T  T  D  F  M  D  S  Q  S  R  L  L  N  L  *  V  T  I  S  F  V  A  S  T  V  S  F  L  H  L  Q  N  M  Q  N  Q  P  S  S  Y  G  G  T  A  N  Y  Q  L  S  R  Y  K  F  S  *  V  E  *  S  C  R  H  S  *  T  E  V  V  K  L  C  S  D  T  *  G  L  E  *  R  I  D  K </first_frame>
            <second_frame>  E  K  K  V  F  C  T  S  Y  N  S  T  V  E  N  K  L  L  Q  *  P  T  C  I  Q  *  A  H  V  V  L  R  D  H  I  T  F  K  I  L  N  T  V  R  T  H  V  A  T  F  L  V  S  I  N  *  H  N  *  N  W  S  I  I  I  Q  G  Y  S  S  V  H  Y  I  L  L  Q  S  P  L  L  P  S  S  G  F  P  A  K  T  R  N  S  S  L  *  S  I  L  T  C  F  H  C  L  L  H  S  Q  L  S  V  L  L  *  L  A  T  L  S  S  *  *  S  P  D  G  Q  S  C  S  G  H  N  D  S  L  P  R  L  I  D  N  S  W  R  G  G  L  L  I  L  W  I  V  K  V  D  Y  S  T  S  E  L  L  Y  H  L  L  L  L  L  F  P  S  Y  T  C  K  I  C  K  I  S  L  H  H  T  V  V  L  L  I  I  S  S  L  G  I  S  F  H  K  *  N  D  P  A  D  I  A  K  Q  K  L  *  S  C  A  L  I  H  K  D  W  N  R  G  L  T   </second_frame>
            <third_frame>   K  K  K  Y  F  V  L  V  T  T  P  Q  *  K  I  S  C  C  N  D  L  L  A  S  N  R  L  M  W  Y  L  E  I  T  *  H  S  K  F  *  I  L  L  E  L  M  *  P  H  F  *  L  V  S  I  S  I  T  E  T  G  L  L  L  Y  R  V  T  V  L  Y  I  I  F  C  C  K  V  H  C  C  H  L  L  A  F  Q  L  K  L  E  I  H  P  C  D  R  F  S  H  A  S  T  V  C  F  T  L  N  Y  Q  Y  Y  C  D  *  Q  R  C  H  H  S  D  R  Q  M  V  N  L  V  Q  G  I  T  T  P  Y  P  D  *  *  I  I  L  G  G  V  D  Y  *  F  Y  G  *  S  K  *  I  T  Q  P  L  S  Y  Y  I  I  C  C  F  Y  C  F  L  L  T  L  A  K  Y  A  K  S  A  F  I  I  R  W  Y  C  *  L  S  A  L  *  V  *  V  F  I  S  R  M  I  L  Q  T  *  L  N  R  S  C  K  V  V  L  *  Y  I  R  I  G  I  E  D  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83887" stop="84129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDGQSCSGHNDSLPRLIDNSWRGGLLILWIVKVDYSTSELLYHLLLLLFPSYTCKICKISLHHTVVLLIISSLGISFHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83672" stop="83866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSISITETGLLLYRVTVLYIIFCCKVHCCHLLAFQLKLEIHPCDRFSHASTVCFTLNYQYYCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81049" e_stop="81114"/>
            <exon e_start="81656" e_stop="81804"/>
            <exon e_start="81892" e_stop="81948"/>
            <exon e_start="82186" e_stop="82224"/>
            <exon e_start="82315" e_stop="82492"/>
            <exon e_start="84984" e_stop="85366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.744" e_score="0.994"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81049" e_stop="81114" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="81115" i_stop="81655" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81656" e_stop="81804" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81805" i_stop="81891" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81892" e_stop="81948" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="81949" i_stop="82185" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82186" e_stop="82224" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82225" i_stop="82314" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="82315" e_stop="82492" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.744">
            <gDNA_intron_boundary i_start="82493" i_stop="84983" i_length="2491"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="84984" e_stop="85366" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81049" stop="81114"/>
              <exon start="81656" stop="81804"/>
              <exon start="81892" stop="81948"/>
              <exon start="82186" stop="82224"/>
              <exon start="82315" stop="82492"/>
              <exon start="84984" stop="85366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG : TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</gDNA_template>
            <first_frame> E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  :  S  L  N  A  W  L  L  N  S  P  N  F  Y  K  L  C  G  R  K  R  L  N  L  D  G  F  K  M  A  I  I  S  P  M  L  E  R  S  Q  V  F  R  G  F  N  P  F  L  V  I  *  I  G  Q  V  G  N  N  N  K  I  L  F  R  C  F  *  P  D  *  *  G  R  C  G  K  V  L  L  Y  Q  M  *  W  I  S  I  S  K  H  F  Y  G  K  E  T  N  N  R  C  T  F  I  I  L  L  R  E  K  G  Q  I  Y  P  Q  F  Y  Q  L  E  L  I  Y  P  L  L  *   </first_frame>
            <second_frame>  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  S :   H  S  M  R  G  F  *  I  H  Q  I  F  T  S  C  V  G  E  K  D  S  T  L  M  D  S  K  W  P  L  F  H  Q  C  W  N  E  V  K  Y  L  E  V  S  I  P  F  W  L  Y  K  *  V  K  W  E  T  T  I  R  Y  Y  S  G  A  F  D  Q  T  N  K  V  V  V  A  K  Y  Y  C  I  R  C  N  G  L  A  S  Q  N  T  S  M  E  R  R  Q  I  I  D  A  H  S  L  Y  Y  *  G  K  R  V  R  Y  T  L  N  F  I  S  *  S  *  Y  I  P  Y  Y  E  </second_frame>
            <third_frame>   M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E   : V  T  Q  C  V  A  F  E  F  T  K  F  L  Q  A  V  W  E  K  K  T  Q  P  *  W  I  Q  N  G  H  Y  F  T  N  A  G  T  K  S  S  I  *  R  F  Q  S  L  F  G  Y  I  N  R  S  S  G  K  Q  Q  *  D  I  I  Q  V  L  L  T  R  L  I  R  S  L  W  Q  S  T  T  V  S  D  V  M  D  *  H  L  K  T  L  L  W  K  G  D  K  *  *  M  H  I  H  Y  I  I  K  G  K  G  S  D  I  P  S  I  L  S  V  R  A  D  I  S  L  I  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0088K02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81050" stop="81114"/>
                    <exon start="81656" stop="81804"/>
                    <exon start="81892" stop="81948"/>
                    <exon start="82186" stop="82224"/>
                    <exon start="82315" stop="82490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="85617" PGL_stop="86054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85617" e_stop="86054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="85617" e_stop="86054" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85617" stop="86054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  K  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  R  H  I  *  T  T  F  I  T  R  G  I  S  A  P  N  D  K  I  E  R  Y  I  R  P  F  S </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  N  T  Q  K  N  S  L  I  F  Y  S  L  S  *  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  L  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  K  P  L  L  *  R  E  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  K  T  H  K  K  I  V  *  F  F  I  L  *  A  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  *  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  I  K  A  Y  I  N  H  F  Y  N  E  R  Y  I  S  S  K  *  Q  N  *  E  V  Y  Q  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0088K02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 74 chains have been computed
$ 
$ memory statistics:
$ 120944 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 8638 bytes was the average size of a spliced alignment
$ 18032 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1803 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 117 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 05:27:00
-->
