<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 11:10:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E739213" ref_strand="+" ref_description="SGN-E739213 [LC16CC03]">
      <seq>cctttttgcttctgcaaattcatcttctatgctcaataaactcttgatttcttcatcatcttcctcatttcggtacttgtgtaaatcaactaagcccttttttcgtgttcttcccatggcggaacaacaacaacaatcatcatcactcagtacttcttcccatacccataaacacaccaatcgtctcgcttctgaacatagtccttaccttcttcagcacgctcataatccggttgattggtatccatggggtgaggaagcgtttgctgaagctcgtaaaagagatgtcccaatcttcttatcaattggttacagtacatgtcattggtgtcatgttatggaagttgaatcttttgaagacgaagaggtagccaaattgctaaatgattggttcgttagcatcaaggttgatagagaggagcgtccagatgttgataaggtgtacatgacatatgtgcaagccttatatggtggtggtggttggccactaagtgccttcctttcacctgatttgaagcctttgatgggtgggacttactttccaccagaggacaaatttggaaggccgggatttaaaactatacttaggaaagtgaaggaagcgtggaatagcaagagagatacgcttatccagagtggggcatttgcaatagaacaattatcaaaagccttggcggcaacttcaacatcaaataagctctcagatgaggttccgcaaaccgctctgcgtaaatgtgctgatcatctggcggaaagttatgattcaaaatatggtggttttggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="256" stop="3476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="556" g_stop="787" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="788" i_stop="872" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="873" g_stop="945" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="305" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="946" i_stop="1039" i_length="94">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1040" g_stop="1061" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="327" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1062" i_stop="1144" i_length="83">
            <donor d_prob="0.231" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1145" g_stop="1223" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="406" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1224" i_stop="1320" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1321" g_stop="1353" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="439" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1354" i_stop="2129" i_length="776">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2130" g_stop="2278" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="588" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2279" i_stop="2428" i_length="150">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2429" g_stop="2585" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="745" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2586" i_stop="3133" i_length="548">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3134" g_stop="3176" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="788" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E739213" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="556" e_stop="787"/>
          <exon e_start="873" e_stop="945"/>
          <exon e_start="1040" e_stop="1061"/>
          <exon e_start="1145" e_stop="1223"/>
          <exon e_start="1321" e_stop="1353"/>
          <exon e_start="2130" e_stop="2278"/>
          <exon e_start="2429" e_stop="2585"/>
          <exon e_start="3134" e_stop="3176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACATCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCGGTACTCATTCGATTATTTTAAACAAAAATAGTTCAAATTGAAAATTTTATGCACTGATTTTTACTTTTTATTTCGTTATGGGAAGGTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAAGTCGGTGATTTTTTGTGTTTCGTTACATTTAATATTGAGCTTGTTTCAGCAATATTGACATATTTTATCTTCCATGTTGTTTTTTGGTTTGAAGTTGGTTACAGTACATGTCATTGGTGAGTTTTTTTGATTTTTTTTTTACTTGGAGAGGTGCTAGAAATTAGTATAATGGAAGACTAATGCTTTATTCATTGTTAAGGTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAGGTGAATCTGGAAGTTTTGTTCATGTTAATTATATCTTGAGCTACATATATTTGGATAATAATAGATTTTTTTGTTACCTTTACTTGTATATGGACAGGTTGATAGAGAGGAGCGTCCAGATGTTGATAAGGTAGAATTATTTACTGAATTATGCTTGAATTGCATTTATAATTGGTTCTTTTTTGAACTTGTTTCTTGGATTAAATCAAAATCATTCCAGTTGAACTTGCATTGATATGATATCTTCATGTAGGGATATCTTTCTAAACTATTTTGTATTCCCAGCATTTTTCAGCTCTTTTCTTTTTTCTATTTCTTTGGATTCAGTTAGTTAGTTGTTCTTTTAAGTTTTGGTTAATCTTCTCTTTTGTTTAAGCTGTTGAAAGCTAGATCCTTATGAGGTTTATAATGCATAGCTAATAATAACAGTCACTGTTTAAATGAGCAAACAAATAATATCCCTTTAGTTGCCAGAGAAGGGTTACTGTGGATCTTAATCTTTTTCATGTACCACACAAGTAGCTAAGACCTCCCAGGTACTAAGAGTGCTCTCACTACCACTAGTAGACGTCAGCTTGTTGGGTCTTTCCTGTACCAAGAACGAGGAAGATACAAATAAATGGAAACAATAACTATATATGGCTCTTGGCCCGATATAATTACATGTGTATTTATTGATGCTCTAGGTTATTTTCGGTAATCCTCATTTTAGTAACATGTTCTTTGGAAATGACTTGCTGCAATCACTTTCTTGGTTATCTGATGAGCAAACCGTGAATGCTCGAGTCTTTGCAACGTGATTAGATTGGCAATTTATTGACTAAGCTTGATTCAGTGATTATTTGATTTTCAATTTGCCAATAGTGATGCTATCAGCGTTGAGTAGCTTAATTTTGGTTCTCTCAGGTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAGGTGTGTTCATTCTGTACTTTCAGATTAAGTGGTTCAACTCAACTATTAAGTATGAATGGCATTTTTCTTAAACTCAATTGCTGTCGAGCAGCATCAATGTTCAATTTGAACTTCTGAGAATATTCCTGTGTACTTCATCATCATGCTTAGGAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAGAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCATGTAAGATTTCTGAAAATCTGTTGTTGAGTTTTCTTTGCATGTGGTGGCAAACTGGTTATTTGGAGTTAAGAGCATGTTTGGATTGGTTTATTTTAAGTGCTTCAAGTCTAAAAAGCGTTTAAGCACTTTTGGAGTGTTTGGATGAATTAAAATGGCGCTTATAAGCACTTGATTTTAAGCTAAAATGATTAAAATAAGCCAAAAGCTAAAAGTCAATCCAGGCAGGCTCTTAGTTACGAGAAGAACCACAGTATGCTTGAGAGACCTTTTACTTTCTCCTATATCTTCTCTATTACTGCTATCCTTTTCATTAAAACACTTCAGAATTCTTCAGATTACTCACGATAAATAATGCCCCTTTTCTCTGGGTAGTCAATCCTCAGTGTGGCAAGTCTTTCTCTGACTTGATCATATGACATCTTTGCATGTTCTTGAAATTTGACCATCAGAATGCTAGTTTTAAGGATTTAATTTCTCAGTTCTCAATATATGTGGTGTTGTTAATGATGATGGTCTTAACTTCCACATGACATCAACATGTGCTACAGCTGGCGGAAAGCTATGATTCAAAATATGGTGGTTTTGGTTCTG</genome_strand>
        <mrna_strand>CCTTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACACCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCG.....................................................................................GTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAA..............................................................................................TTGGTTACAGTACATGTCATTG...................................................................................GTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAG.................................................................................................GTTGATAGAGAGGAGCGTCCAGATGTTGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAG......................................................................................................................................................GAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAAAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGAAAGTTATGATTCAAAATATGGTGGTTTTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E313994" ref_strand="+" ref_description="SGN-E313994 [cTOA-19-D8]">
      <seq>accaatcccaaggagtacatggatgtcgctgagaaagcaacataggttattaggaaacacctttataatgaacagacgcgcaggctccagcatagcttcaggaatggtccctccaaagcgcctggatttctagatgattatgcatttctgatagcaggtctactggatctttatgaattcggcggttcagtcttctggttgggttgggcactagaacttcaggagaaacaggacgagttatttctcgacaaaaccggaggaggttactttaacacaactggtgaagatccttctgttcttctacgtgtgaaagaagatcatgatggggctgagccttcagggaattccgtttctgtgattaatctagtgagattggcctctatggttgctggtgaaaaatcaaaactttacagagagaccggagaacatgtcctggcggtttttgagaagaggttgaaagaagcagctgttgctgtgccactgatgtgctgtgcagcagatatgctggctattccgtccagaaagcaagtagttatagtcggagtgaagtcttctgaggagtttgaaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="5100" stop="6409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5402" g_stop="5626" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="231" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5627" i_stop="5692" i_length="66">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5693" g_stop="5896" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="435" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5897" i_stop="5971" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5972" g_stop="6109" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="573" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E313994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5402" e_stop="5626"/>
          <exon e_start="5693" e_stop="5896"/>
          <exon e_start="5972" e_stop="6109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATATTTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAGGTAAGGAAATCCAGGATCTTCTGGTGAATGTGCAAGTCCTGATTACTGTTGAACTATTCTTTGCAGGACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTGGTACATATGCATCTTACATTGACTATGTAATCCTTGTATTGTGTCCAGTAGTTTTTTAACCTTTGCATATAATAGGCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATG</genome_strand>
        <mrna_strand>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATAGGTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAG..................................................................GACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTG...........................................................................GCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E598154" ref_strand="+" ref_description="SGN-E598154 [73823]">
      <seq>gtcctggcggtttttgagaagagattgaaagatgcagctgttgctgtgccactgatgtgctgtgcagcagatatgctggctattccgtccagaaagcaagtagttatagtcggagtaaagtcttctgaggagtttgaaaacatggttactgctgctcatgcagcatatgatcctaacaagacggtgattcacgttgatcccacggatgtggaagaggtggcattttgggaagaaactaatggaaatattgctctgatggcgaaaaacaatgctgctgcggacaaagtgatagcccttgtttgccaaaacttcacatgtagtcctccagtcagtgacccgaaagctcttgaatcattgctctcgcagtagataacttctaaaagcagttcaagagtgtgtacataaagtggcgaaaaactggagagacggagatcggtcgtcggttatgtgttgcaataaggctctgtatggtggttctgagttcttgtggatcaactgatcactatgctgctgttcattagttcaaaggaatatagatgaaagctagatatcaaggtcacttgtgagtttaatgaatgtttacacttatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="5671" stop="7024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5891" g_stop="5896" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5897" i_stop="5971" i_length="75">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5972" g_stop="6148" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="183" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6149" i_stop="6238" i_length="90">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6239" g_stop="6453" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="397" r_length="214" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6454" i_stop="6534" i_length="81">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6535" g_stop="6685" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="547" r_length="150" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E598154" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5891" e_stop="5896"/>
          <exon e_start="5972" e_stop="6148"/>
          <exon e_start="6239" e_stop="6453"/>
          <exon e_start="6535" e_stop="6685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTGGTACATATGCATCTTACATTGACTATGTAATCCTTGTATTGTGTCCAGTAGTTTTTTAACCTTTGCATATAATAGGCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATGGTTACCGCTGCTCATGCAGCATATGATCCTAACAAGACGGTAAGTACTTTACTTGTAGTAGCTATGAACCGTTCACATCACATTGTACAACTATGGATTTCATTTCTGACTAGTACTGACTCTGAATAGGTGATCCATATCGATCCCAAGGATGCAGAAGATGTGGCATTTTGGGAAGAAACTAATAGAAATATTGCTCTGATGGCGAAAAACAATGCTGCTGCGGACAAAGTGGTAGCCCTTGTTTGCCAAAACTTCACATGTAGCCCTCCAGTCAGTGACCCGAAAGCTCTAGAATCGTTGCTCTCGCAGTAGATAAACTTCTAAAAGCAGTTCAAGAGTGTGGACGAAAAACTGGAAAGATGGAGATCAGTCTTGAATCGTTGGTCTCACAGTAGATAACTTCTAAAATAGTTCAAGAGTGCGTACATAAAGTGGTGAAAAGCTGGAGAGGCGGAGATCCGTCGTTGGTTATGCGTTGCAATAAGGCTCTGTATGGTAGTTCTGAGTTCTTGTGGATCCAACTGATCATTATACTGCAGATTATTAGTTCAAAGGAATGTAGATGAAAGCTAA</genome_strand>
        <mrna_strand>GTCCTG...........................................................................GCGGTTTTTGAGAAGAGATTGAAAGATGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTAAAGTCTTCTGAGGAGTTTGAAAACATGGTTACTGCTGCTCATGCAGCATATGATCCTAACAAGACG..........................................................................................GTGATTCACGTTGATCCCACGGATGTGGAAGAGGTGGCATTTTGGGAAGAAACTAATGGAAATATTGCTCTGATGGCGAAAAACAATGCTGCTGCGGACAAAGTGATAGCCCTTGTTTGCCAAAACTTCACATGTAGTCCTCCAGTCAGTGACCCGAAAGCTCTTGAATCATTGCTCTCGCAGTAGAT-AACTTCTAAAAGCAGTTCAAGAGTGT.................................................................................GTACATAAAGTGGCGAAAAACTGGAGAGACGGAGATCGGTCGTCGGTTATGTGTTGCAATAAGGCTCTGTATGGTGGTTCTGAGTTCTTGTGGAT-CAACTGATCACTATGCTGCTGTTCATTAGTTCAAAGGAATATAGATGAAAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E282238" ref_strand="+" ref_description="SGN-E282238 [cLES-4-A24]">
      <seq>aaaagctggagaggcggagatccgacgttggttatgcgatgcactaaggctctgcatggtattccagaattctcgtggatccaactgaccatgatactgcacattattagttcaaaggaatgtagatgaaagctaagttcacttttgagtttaatgaatgtttacacttgtatagttaggccagtcctggtgttagaaaatatctatgagtttcttttttaacattaacagttggaataaatgcaaaaggttgtataaattcagtatgttcctttcatcttaagaggttggtttgcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="6250" stop="7148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6550" g_stop="6847" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E282238" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6550" e_stop="6847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGGAGAGGCGGAGATCCGTCGTTGGTTATGCGTTGCAATAAGGCTCTGTATGGTAGTTCTGAGTTCTTGTGGATCCAACTGATCATTATACTGCAGATTATTAGTTCAAAGGAATGTAGATGAAAGCTAAGTTCACTTTTGAGTTTAATGAATGTTTACACTTGTATAGTTAGGCCAGTCCTGGTGTTAGAAAATATTTATGAGTTTCTTTTTTAACATTAACAGTTGGAATAAATGCAAAAGGTTGTATAAATTTAGTAGTTTCCTTTCATCTAAGGAGGTTGGTTTGCGG</genome_strand>
        <mrna_strand>AAAAGCTGGAGAGGCGGAGATCCGACGTTGGTTATGCGATGCACTAAGGCTCTGCATGGTATTCCAGAATTCTCGTGGATCCAACTGACCATGATACTGCACATTATTAGTTCAAAGGAATGTAGATGAAAGCTAAGTTCACTTTTGAGTTTAATGAATGTTTACACTTGTATAGTTAGGCCAGTCCTGGTGTTAGAAAATATCTATGAGTTTCTTTTTTAACATTAACAGTTGGAATAAATGCAAAAGGTTGTATAAATTCAGTATGTTCCTTTCATCTTAAGAGGTTGGTTTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E687851" ref_strand="+" ref_description="SGN-E687851 [T3_tus_81_F09]">
      <seq>tagatgagtcccctactagtatacttcagattatgacctcacatccaatgagcgataccttattgttatcccccctctcagacgagttgattagcttgaccgaaaatgaaaagcattggggaaaatgtggatatgaagggaacaaaaaggcaatccttgaatctttgccattagcgaatggtactcattatgcaaatggagaagcttcagaggcgaggaaattggtaacttctgacaaaaaatccttggcaaagggcaaaggctgtgctaatgaaaatgatagtgccttattatcaaagaaggatattgatagtctggcctgtgaagaacttgtttcaaaggccttgaaactccctcttttatctaatccataccctaatgctgctgatcctccaaaagatacagagaagacacttgacagttcaaaaacagccactaagggtaagagaaaagaagcatcctctgagcggacatccaagaaatttttgctgcctgtcactgcaatagacaaaaattctgttgaagggtctggtggaaaggtttcctcatctaggagaactatggaaattaaagggacagattgtaatgatcatagctcaggatacttgaagaaagaaggccaaaaccaagaggaaaaagctgatgcttcatccaacaacggacagtctaaagatatgaatgtgcgaaacgtagatgcagttagtcccctcaagcagtcatctcgtcagaaaagctcctccaacaatgaggatggaatgaaactggctcctgaaaaggaagtttttgcatctagagacacaatgaaacccaaaggaaatcaatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="21890" stop="23416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22189" g_stop="22217" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22218" i_stop="22317" i_length="100">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22318" g_stop="23116" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="828" r_length="799" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E687851" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22189" e_stop="22217"/>
          <exon e_start="22318" e_stop="23116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGAGTCCCCTACTAGTATACTTCAGGTGAATCTTCCCTCAAGCTTTAATTTTGCTTTATTTTTCTTCTTTTTGGTTTAATCTAACCTTGGCATCTGCAATTTTCTTAATCAACCCATTGGAACAGATTATGACCTCACATCCAATGAGCGATACCTTATTGTTATCCCCCCTCTCAGACGAGTTGATTAGCTTGACCGAAAATGAAAAGCATTGGGGAAAATGTGGATATGAAGGGAACAAAAAGGCAATCCTTGAATCTTTGCCATTAGCGAATGGTACTCATTATGCAAATGGAGAAGCTTCAGAGGCGAGGAAATTGGTAACTTCTGACAAAAAATCCTTGGCAAAGGGCAAAGGCTGTGCTAATGAAAATGATAGTGCCTTATTATCAAAGAAGGATATTGATAGTCTGGCCTGTGAAGAACTTGTTTCAAAGGCCTTGAAACTCCCTCTTTTATCTAATCCATACCCTAATGCTGCTGATCCTCCAAAAGATACAGAGAAGACAGTTGACAGTTCAAAAACAGCCACTAAGGGTAAGAGAAAAGAAGCATCCTCTGAGCGGACATCCAAGAAATTTTTGCTGCCTGTCACTGCAATAGACAAAAATTCTGTTGAAGGGTCTGGTGGAAAGGTTTCCTCATCTAGGAGAACTATGGAAATTAAAGGGACAGATTGTAATGATCATAGCTCAGGATACTTGAAGAAAGAAGGCCAAAACCAAGAGGAAAAAGCTGATGCTTCATCCAACAACGGACAGTCTAAAGATATGAATGTGCGAAACGTAGATGCAGTTAGTCCCCTCAAGCAGTCATCTCGTCAGAAAAGCTCCTCCAACAATGAGGATGGAATGAAACTGGCTCCTGAAAAGGAAGTTTTTGCATCTAGAGACACAATGAAACCCAAAGGAAATCAATGTCATC</genome_strand>
        <mrna_strand>TAGATGAGTCCCCTACTAGTATACTTCAG....................................................................................................ATTATGACCTCACATCCAATGAGCGATACCTTATTGTTATCCCCCCTCTCAGACGAGTTGATTAGCTTGACCGAAAATGAAAAGCATTGGGGAAAATGTGGATATGAAGGGAACAAAAAGGCAATCCTTGAATCTTTGCCATTAGCGAATGGTACTCATTATGCAAATGGAGAAGCTTCAGAGGCGAGGAAATTGGTAACTTCTGACAAAAAATCCTTGGCAAAGGGCAAAGGCTGTGCTAATGAAAATGATAGTGCCTTATTATCAAAGAAGGATATTGATAGTCTGGCCTGTGAAGAACTTGTTTCAAAGGCCTTGAAACTCCCTCTTTTATCTAATCCATACCCTAATGCTGCTGATCCTCCAAAAGATACAGAGAAGACACTTGACAGTTCAAAAACAGCCACTAAGGGTAAGAGAAAAGAAGCATCCTCTGAGCGGACATCCAAGAAATTTTTGCTGCCTGTCACTGCAATAGACAAAAATTCTGTTGAAGGGTCTGGTGGAAAGGTTTCCTCATCTAGGAGAACTATGGAAATTAAAGGGACAGATTGTAATGATCATAGCTCAGGATACTTGAAGAAAGAAGGCCAAAACCAAGAGGAAAAAGCTGATGCTTCATCCAACAACGGACAGTCTAAAGATATGAATGTGCGAAACGTAGATGCAGTTAGTCCCCTCAAGCAGTCATCTCGTCAGAAAAGCTCCTCCAACAATGAGGATGGAATGAAACTGGCTCCTGAAAAGGAAGTTTTTGCATCTAGAGACACAATGAAACCCAAAGGAAATCAATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E327261" ref_strand="+" ref_description="SGN-E327261 [cTOC-19-I14]">
      <seq>agatgagtcccctactagtatacttcagattatgacctcacatccaatgagcgataccttattgttatcccccctctcagacgagttgattagcttgaccgaaaatgaaaagcattggggaaaatgtggatatgaagggaacaaaaaggcaatccttgaatctttgccattagcgaatggtactcattatgcaaacggagaagcttcagaggcgaggaaattggtaacttctgacaaaaaatccttggcaaagggctaaggctgcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="21890" stop="22857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22190" g_stop="22217" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22218" i_stop="22317" i_length="100">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22318" g_stop="22557" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="268" r_length="240" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E327261" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22190" e_stop="22217"/>
          <exon e_start="22318" e_stop="22557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGTCCCCTACTAGTATACTTCAGGTGAATCTTCCCTCAAGCTTTAATTTTGCTTTATTTTTCTTCTTTTTGGTTTAATCTAACCTTGGCATCTGCAATTTTCTTAATCAACCCATTGGAACAGATTATGACCTCACATCCAATGAGCGATACCTTATTGTTATCCCCCCTCTCAGACGAGTTGATTAGCTTGACCGAAAATGAAAAGCATTGGGGAAAATGTGGATATGAAGGGAACAAAAAGGCAATCCTTGAATCTTTGCCATTAGCGAATGGTACTCATTATGCAAATGGAGAAGCTTCAGAGGCGAGGAAATTGGTAACTTCTGACAAAAAATCCTTGGCAAAGGGCAAAGGCTGTGCT</genome_strand>
        <mrna_strand>AGATGAGTCCCCTACTAGTATACTTCAG....................................................................................................ATTATGACCTCACATCCAATGAGCGATACCTTATTGTTATCCCCCCTCTCAGACGAGTTGATTAGCTTGACCGAAAATGAAAAGCATTGGGGAAAATGTGGATATGAAGGGAACAAAAAGGCAATCCTTGAATCTTTGCCATTAGCGAATGGTACTCATTATGCAAACGGAGAAGCTTCAGAGGCGAGGAAATTGGTAACTTCTGACAAAAAATCCTTGGCAAAGGGCTAAGGCTGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E208362" ref_strand="+" ref_description="SGN-E208362 [cLEC-37-G20]">
      <seq>tcaaatgaatcttccgatcaaagaatagatgaggggaaattgacatccggaagaaacaaggctgaggataaatctggtgccagttctgacagattacaacaaggttataagagagattcttttggagaattgttgaatgagaatgtaaaaggtgttattcaatcgaaatttgttgatggtgctgaagttaaattggatgttatatccggcctggataaaaggcgggctgctctaactgatcgagatgatgggagatcgtctaggaagcttgcatctgaaaaaactcagcaaattgaagtacttgagaaagggaagtcacacttaacatctccttcaataagaggtcagaatgagacagttcaatcttcacaaccagttcctgcattcaagagggagggtgtggctaacttgttggcagtagatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="25290" stop="26316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25590" g_stop="26016" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E208362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25590" e_stop="26016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGAATCTTCCGATCAAAGAATAGATGAGGGGAAATTGACATCCGGAAGAAACAAGGCTGAGGATAAATCTGGTGCCAGTTCTGACAGATTACAACAAGGTTATAAGAGAGATTCTTTTGGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCAT</genome_strand>
        <mrna_strand>TCAAATGAATCTTCCGATCAAAGAATAGATGAGGGGAAATTGACATCCGGAAGAAACAAGGCTGAGGATAAATCTGGTGCCAGTTCTGACAGATTACAACAAGGTTATAAGAGAGATTCTTTTGGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E266708" ref_strand="+" ref_description="SGN-E266708 [cLEI-5-H20]">
      <seq>ggagaattgttgaatgagaatgtaaaaggtgttattcaatcgaaatttgttgatggtgctgaagttaaattggatgttatatccggcctggataaaaggcgggctgctctaactgatcgagatgatgggagatcgtctaggaagcttgcatctgaaaaaactcagcaaattgaagtacttgagaaagggaagtcacacttaacatctccttcaataagaggtcagaatgagacagttcaatcttcacaaccagttcctgcattcaagagggagggtgtggctaacttgttggcagtagatgcatttgaaggagagatgttgaacgcttcaagacagggtaaaaaatctgaaagccaccctggaaacaaacctaatagtttgcgacaatctactccacctgcaaataagacccgagctccaggcgctcgcagccctattcggaaggattctgcaagtcaggccgctgcgaatgccattaaagaagccacaaacctaaaacatcttgcagatcgcctcaagaactctgtgccaagtgaaagcacgagtctctattttcaagcaaccctaaagtttctccatggagcatccttgttagaatcatgcaacgacagtgccaaacacagtgaaatgaatcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="25413" stop="26772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25713" g_stop="26231" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26232" i_stop="26352" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26353" g_stop="26472" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="639" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E266708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25713" e_stop="26231"/>
          <exon e_start="26353" e_stop="26472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCATTTGAAGGAGAGATGTTGAACGCTTCAAGACAGGGTAAAAAATCTGAAAGCCACCCTGGAAACAAACCTAATAGTTTGCGACAATCTACTCCACCTGCAAATAAGACCCGAGCTCCAGGCGCTCGCAGCCCTATTCGGAAGGATTCTGCAAGTCAGGCCGCTGCGAATGCCATTAAAGAAGCCACAAACCTAAAACATCTTGCAGATCGCCTCAAGGTTTACATAATTTTCCTTCTTATCCAAAGATAAGAGGGGCTAATGATATGCTTTATCATTTGCTCTCTTTTGTGTATTTATTTTCTCATTTGTGTTGGCATAACTTGACTTCTTGTTTCAGAACTCTGTGCCAAGTGAAAGCACGAGTCTCTATTTTCAAGCAACCCTAAAGTTTCTCCATGGAGCATCCTTGTTAGAATCATGCAACGACAGTGCCAAACACAGTGAAATGAATCAGTCG</genome_strand>
        <mrna_strand>GGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCATTTGAAGGAGAGATGTTGAACGCTTCAAGACAGGGTAAAAAATCTGAAAGCCACCCTGGAAACAAACCTAATAGTTTGCGACAATCTACTCCACCTGCAAATAAGACCCGAGCTCCAGGCGCTCGCAGCCCTATTCGGAAGGATTCTGCAAGTCAGGCCGCTGCGAATGCCATTAAAGAAGCCACAAACCTAAAACATCTTGCAGATCGCCTCAAG.........................................................................................................................AACTCTGTGCCAAGTGAAAGCACGAGTCTCTATTTTCAAGCAACCCTAAAGTTTCTCCATGGAGCATCCTTGTTAGAATCATGCAACGACAGTGCCAAACACAGTGAAATGAATCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E266709" ref_strand="+" ref_description="SGN-E266709 [cLEI-5-H24]">
      <seq>ggagaattgttgaatgagaatgttaaaggtgttattcaatcgaaatttgttgatggtgctgaagttaaattggatgttatatccggcctggataaaaggcgggctgctctaactgatcgagatgatgggagatcgtctaggaagcttgcatctgaaaaaactcagcaaattgaagtacttgagaaagggaagtcacacttaacatctccttcaataagaggtcagaatgagacagttcaatcttcacaaccagttcctgcattcaagagggagggtgtggctaacttgttggcagtagatgcatttgaaggagagatgttgaacgcttcaagacagggtaaaaaatctgaaagccaccctggaaacaaacctaatagtttgcgacaatctactccacctgcaaataagacccgagctccaggcgctcgcaaccctattcggaaggattctgcaagtcaggccgctgcgaatgccattaaagaagccacaaacctaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="25413" stop="26512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25713" g_stop="26212" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E266709" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25713" e_stop="26212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCATTTGAAGGAGAGATGTTGAACGCTTCAAGACAGGGTAAAAAATCTGAAAGCCACCCTGGAAACAAACCTAATAGTTTGCGACAATCTACTCCACCTGCAAATAAGACCCGAGCTCCAGGCGCTCGCAGCCCTATTCGGAAGGATTCTGCAAGTCAGGCCGCTGCGAATGCCATTAAAGAAGCCACAAACCTAAAACA</genome_strand>
        <mrna_strand>GGAGAATTGTTGAATGAGAATGTTAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCATTTGAAGGAGAGATGTTGAACGCTTCAAGACAGGGTAAAAAATCTGAAAGCCACCCTGGAAACAAACCTAATAGTTTGCGACAATCTACTCCACCTGCAAATAAGACCCGAGCTCCAGGCGCTCGCAACCCTATTCGGAAGGATTCTGCAAGTCAGGCCGCTGCGAATGCCATTAAAGAAGCCACAAACCTAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E271521" ref_strand="+" ref_description="SGN-E271521 [cLEM-23-O11]">
      <seq>tcctataaatgcatggaggttgcgtaccctgcgagtaatttattcctctaatttcaatgccaaccagatatagaaatgaacctaccaaacagccctgcaaatttttcctccaggtgaatccccttcctcttctgcctcagatgttgacaatttgaaccaatccaactattgtagaccaaggttacccatggcgaaaggtgttgcttctccccaggttacccggaacctcatgcctgtctcagcgagaaaccgtgcctagcttcacgccgctatttaactttgcaccaggaagtttatttagctatggaccccctccaggaaatcacgtgttgcttttgcagctgcttatcctggacaccagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagcttccatgatgtcgacgacttcttaccgtttagtccggattgccatggaagctattagcccttgacatgtaaattatggctaaaaccgtgtgaatccatgagacaagactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="27169" stop="29641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27469" g_stop="27577" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27578" i_stop="28488" i_length="911">
            <donor d_prob="0.981" d_score="0.90"/>
            <acceptor a_prob="0.906" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28489" g_stop="28649" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="281" r_length="168" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29098" g_stop="29341" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="529" r_length="248" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E271521" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27469" e_stop="27577"/>
          <exon e_start="28489" e_stop="28649"/>
          <exon e_start="29098" e_stop="29341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATAAATGCATGGAGGTTGCGTA-CCTGCGAGTAATTTATTCCTCTAATTTCAATG-CAAACAGATATAGAAATGAA-CTA-CAAACAGCCCTGCAAATTTTTCCTCCAGGTAATTTGCTAAAGATTCAGCTGAAAAATATACATCTTACATCACGATACCAATTTTAATTTAGACATCTCCAATTGTAATGGCGCACCCCTCTAAGACTTCTAGTTTGACCTTGATGTTACTGAAGTGGAGTGGTTTTCCTGTATATTGATATTGGTTGACAGGATGGTCTCAACATTTTATATGTACTATGCCAAACCATTGCCGTATATTCATAGGCTTATGCATTGCTGTACCTCTGATTTGTCGAAGATGAAAGATGAGATAATCAGGGATAGATAAGTCTGGAATTATTGCCAGGAGATTGAAAAATATTGTATTTTTGCTTATAAATAATTGATTATAAAGTTTGGTATCTTTAGCCAAAAAGCAACATTATAGGCTGCTAAATTGTTCCTAAATCGTCATGACAATTCACATAAATAACATTTATCTCTGATGATCAATGCTTCAAAGGGATTTTCTTCAAGGATGATCTGTTATTAGGTATTAGTTGTATATGTTTTCACAGTTGTACAAAAATTGATTCCTTGAATATTTTTTATTATAAAAAGTAATCAAGTTTTGGGACATTGATAGAAGATGAAAGAGTTGACTGGAAATTTATACTCTGTTTTTTATGAAAATGATAGCTAGGAGGACCATAGTATATTATGAATTGAGCACCAAAAGTAGTTTAATTAGTGATTAACTCTTTCTTATCAGGAATAAAGGTTCAACAAGTGCAAATAATTGTTTGATTCTTTTTCTTAAACAAAACAGCTGTATCTGATTAGTAATATTGATGAAGTATCTTTGACTATCTTATTGTTGGACTGGACTTCTTTTTTCTTTTTTTTTTGACAACGGTAACATGACTGGACTTCTTTTTAAGGGTTACACTTACTGGATTTATTATCATCATACACCAGGTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAA-CAATCCAACTATTGTAGA-CAAGGTTA-CCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTA-CCGGAA-CTCATG-CTGTCTCAGCGAGAAACCGTG-CTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCA-CAGGAAGTTTATTTAGCTATGGA-CGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACA-CAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTA-CGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTG</genome_strand>
        <mrna_strand>TCCTATAAATGCATGGAGGTTGCGTACCCTGCGAGTAATTTATTCCTCTAATTTCAATGCCAACCAGATATAGAAATGAACCTACCAAACAGCCCTGCAAATTTTTCCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAACCAATCCAACTATTGTAGACCAAGGTTACCCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTACCCGGAACCTCATGCCTGTCTCAGCGAGAAACCGTGCCTAGCTTCACGCCGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGGAAGTTTATTTAGCTATGGACCCCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACCAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACCGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCCTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E582698" ref_strand="+" ref_description="SGN-E582698 [8331]">
      <seq>ggttgcgtacctgcgagtaatttattcctctaatttcaatgcaaacagatatagaaatgaactacaaacagccctgcaaatttttcctccaggtgaatccccttcctcttctgcctccgatgttgacaatttgaacaatccaactattgtagacaaggttaccttggcgaaaggtgttgcttctccccaggttgctggaactcatgttgtctcagcgagaaaccgtgctagcttcacgcggctatttaactttgcacaggaagtttatttagcaatggacgcctccaggaaatcatgtgttgcttttgcagctgcttatcctggacacagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagctcccatgatgttgacaacttcttacgtttagtccggatggccatggaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="27186" stop="29581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27486" g_stop="27577" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27578" i_stop="28488" i_length="911">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28489" g_stop="28649" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="253" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29098" g_stop="29281" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="438" r_length="185" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E582698" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27486" e_stop="27577"/>
          <exon e_start="28489" e_stop="28649"/>
          <exon e_start="29098" e_stop="29281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCGTACCTGCGAGTAATTTATTCCTCTAATTTCAATGCAAACAGATATAGAAATGAACTACAAACAGCCCTGCAAATTTTTCCTCCAGGTAATTTGCTAAAGATTCAGCTGAAAAATATACATCTTACATCACGATACCAATTTTAATTTAGACATCTCCAATTGTAATGGCGCACCCCTCTAAGACTTCTAGTTTGACCTTGATGTTACTGAAGTGGAGTGGTTTTCCTGTATATTGATATTGGTTGACAGGATGGTCTCAACATTTTATATGTACTATGCCAAACCATTGCCGTATATTCATAGGCTTATGCATTGCTGTACCTCTGATTTGTCGAAGATGAAAGATGAGATAATCAGGGATAGATAAGTCTGGAATTATTGCCAGGAGATTGAAAAATATTGTATTTTTGCTTATAAATAATTGATTATAAAGTTTGGTATCTTTAGCCAAAAAGCAACATTATAGGCTGCTAAATTGTTCCTAAATCGTCATGACAATTCACATAAATAACATTTATCTCTGATGATCAATGCTTCAAAGGGATTTTCTTCAAGGATGATCTGTTATTAGGTATTAGTTGTATATGTTTTCACAGTTGTACAAAAATTGATTCCTTGAATATTTTTTATTATAAAAAGTAATCAAGTTTTGGGACATTGATAGAAGATGAAAGAGTTGACTGGAAATTTATACTCTGTTTTTTATGAAAATGATAGCTAGGAGGACCATAGTATATTATGAATTGAGCACCAAAAGTAGTTTAATTAGTGATTAACTCTTTCTTATCAGGAATAAAGGTTCAACAAGTGCAAATAATTGTTTGATTCTTTTTCTTAAACAAAACAGCTGTATCTGATTAGTAATATTGATGAAGTATCTTTGACTATCTTATTGTTGGACTGGACTTCTTTTTTCTTTTTTTTTTGACAACGGTAACATGACTGGACTTCTTTTTAAGGGTTACACTTACTGGATTTATTATCATCATACACCAGGTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAACAATCCAACTATTGTAGACAAGGTTACCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTACCGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGG-AAGCTA</genome_strand>
        <mrna_strand>GGTTGCGTACCTGCGAGTAATTTATTCCTCTAATTTCAATGCAAACAGATATAGAAATGAACTACAAACAGCCCTGCAAATTTTTCCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCCCTTCCTCTTCTGCCTCCGATGTTGACAATTTGAACAATCCAACTATTGTAGACAAGGTTACCTTGGCGAAAGGTGTTGCTTCTCCCCAGGTTGCTGGAACTCATGTTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAAGTTTATTTAGCAATGGACGCCTCCAGGAAATCATGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTCCCATGATGTTGACAACTTCTTACGTTTAGTCCGGATGGCCATGGAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E705329" ref_strand="+" ref_description="SGN-E705329 [FA26DC08]">
      <seq>gttgcgtacctgcgagtaatttattcctctaatttcaatgcaaacagatatagaaatgaactacaaacagccctgcaaatttttcctccaggtgaatccccttcctcttctgcctcagatgttgacaatttgaacaatccaactattgtagacaaggttaccatggcgaaaggtgttgcttctccccaggttaccggaactcatgctgtctcagcgagaaaccgtgctagcttcacgcggctatttaactttgcacaggaagtttatttagctatggacgcctccaggaaatcacgtgttgcttttgcagctgcttatcctggacacagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagcttccatgatgtcgacgacttcttacgtttagtccggattgccatggaagctattagccgttgacatgtaaattatggctaaaaccgtgtgaatccatgagacaagactcttgaacctgttcctccttttgttgtcaattgaggagatgtcagaaagagatcctcttggtcgagatatgatatataacctatcaagttatgagttctactcataatgcccttgtaaatatgtacatagctgaaaactatagttggtaagatattttcaatacagccatggttccaatcttacagaaatagggggcttcactgtttggtagtcggaaaagcttgtttgacacaagttttgaagaaacggggaggattatagtatcagataactttgtggggaaacagatgagatacatactcatcttttgttgcattgtatattcatcgcgcagttatggaatgtattttttactctcacagactgcagatctgctgagttgtgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="27187" stop="30026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27487" g_stop="27577" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27578" i_stop="28488" i_length="911">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28489" g_stop="28649" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="252" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29098" g_stop="29726" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="881" r_length="629" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E705329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27487" e_stop="27577"/>
          <exon e_start="28489" e_stop="28649"/>
          <exon e_start="29098" e_stop="29726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCGTACCTGCGAGTAATTTATTCCTCTAATTTCAATGCAAACAGATATAGAAATGAACTACAAACAGCCCTGCAAATTTTTCCTCCAGGTAATTTGCTAAAGATTCAGCTGAAAAATATACATCTTACATCACGATACCAATTTTAATTTAGACATCTCCAATTGTAATGGCGCACCCCTCTAAGACTTCTAGTTTGACCTTGATGTTACTGAAGTGGAGTGGTTTTCCTGTATATTGATATTGGTTGACAGGATGGTCTCAACATTTTATATGTACTATGCCAAACCATTGCCGTATATTCATAGGCTTATGCATTGCTGTACCTCTGATTTGTCGAAGATGAAAGATGAGATAATCAGGGATAGATAAGTCTGGAATTATTGCCAGGAGATTGAAAAATATTGTATTTTTGCTTATAAATAATTGATTATAAAGTTTGGTATCTTTAGCCAAAAAGCAACATTATAGGCTGCTAAATTGTTCCTAAATCGTCATGACAATTCACATAAATAACATTTATCTCTGATGATCAATGCTTCAAAGGGATTTTCTTCAAGGATGATCTGTTATTAGGTATTAGTTGTATATGTTTTCACAGTTGTACAAAAATTGATTCCTTGAATATTTTTTATTATAAAAAGTAATCAAGTTTTGGGACATTGATAGAAGATGAAAGAGTTGACTGGAAATTTATACTCTGTTTTTTATGAAAATGATAGCTAGGAGGACCATAGTATATTATGAATTGAGCACCAAAAGTAGTTTAATTAGTGATTAACTCTTTCTTATCAGGAATAAAGGTTCAACAAGTGCAAATAATTGTTTGATTCTTTTTCTTAAACAAAACAGCTGTATCTGATTAGTAATATTGATGAAGTATCTTTGACTATCTTATTGTTGGACTGGACTTCTTTTTTCTTTTTTTTTTGACAACGGTAACATGACTGGACTTCTTTTTAAGGGTTACACTTACTGGATTTATTATCATCATACACCAGGTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAACAATCCAACTATTGTAGACAAGGTTACCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTACCGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTTACTCTCACAGACTGCAGATCTGCTGAGTTGTGCTGGA</genome_strand>
        <mrna_strand>GTTGCGTACCTGCGAGTAATTTATTCCTCTAATTTCAATGCAAACAGATATAGAAATGAACTACAAACAGCCCTGCAAATTTTTCCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAACAATCCAACTATTGTAGACAAGGTTACCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTACCGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTTACTCTCACAGACTGCAGATCTGCTGAGTTGTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E367820" ref_strand="+" ref_description="SGN-E367820 [TUS-22-C1]">
      <seq>cggaactcatgctgtctcagcgagaaaccgtgctagcttcacgcggctatttaactttgcacaggaagtttatttagctatggacgcctccaggaaatcacgtgttgcttttgcagctgcttatcctggacacagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagcttccatgatgtcgacgacttcttacgtttagtccggattgccatggaagctattagccgttgacatgtaaattatggctaaaaccgtgtgaatccatgagacaagactcttgaacctgttcctccttttgttgtcaattgaggagatgtcagaaagagatcctcttggtcgagatatgatatataacctatcaagttatgagttctactcataatgcccttgtaaatatgtacatagctgaaaactatagttggtaagatattttcaatacagccatggttccaatcttacagaaatagggggcttcactgtttggtagtcggaaaagcttgtttgacacaagttttgaagaaacggggaggattatagtatcagataactttgtggggaaacagatgagatacatactcatcttttgttgcattgtatattcatcgcgcagttatggaatgtatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="28292" stop="29989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28592" g_stop="28649" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29098" g_stop="29689" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="650" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E367820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28592" e_stop="28649"/>
          <exon e_start="29098" e_stop="29689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTT</genome_strand>
        <mrna_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E238585" ref_strand="+" ref_description="SGN-E238585 [cLED-17-D4]">
      <seq>cggaactcatgctgtctcagcgagaaaccgtgctagcttcacgcggctatttaactttgcacaggaagtttatttagctatggacgcctccaggaaatcacgtgttgcttttgcagctgcttatcctggacacagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagcttccatgatgtcgacgacttcttacgtttagtccggattgccatggaagctattagccgttgacatgtaaattatggctaaaaccgtgtgaatccatgagacaagactcttgaacctgttcctccttttgttgtcaattgaggagatgtcagaaagagatcctcttggtcgagatatgatatataacctatcaagttatgagttctactcataatgcccttgtaaatatgtacatagctgaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="28292" stop="29776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28592" g_stop="28649" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29098" g_stop="29476" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="437" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E238585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28592" e_stop="28649"/>
          <exon e_start="29098" e_stop="29476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTA</genome_strand>
        <mrna_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E242642" ref_strand="+" ref_description="SGN-E242642 [cLED-30-G10]">
      <seq>cggaactcatgctgtctcagcgagaaaccgtgctagcttcacgcggctatttaactttgcacaggaagtttatttagctatggacgcctccaggaaatcacgtgttgcttttgcagctgcttatcctggacacagtgatacacagtgtaaagtgcctgcattatccgtaaagaaggcccttgatttcagcttccatgatgtcgacgacttcttacgtttagtccggattgccatggaagctattagccgttgacatgtaaattatggctaaaaccgtgtgaatccatgagacaagactcttgaacctgttcctccttttgttgtcaattgaggagatgtcagaaagagatcctcttggtcgagatatgatatataaccctatcaagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="28292" stop="29728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28592" g_stop="28649" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29098" g_stop="29428" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="390" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E242642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28592" e_stop="28649"/>
          <exon e_start="29098" e_stop="29428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTTGTAAGTAGTCATATAATTCAGCTCCATTAATGAGTTGGTCTAATTGAGTGAATGAGATAAAAATTATTTGTTGTCGAATTCTGTTATCCATCTGGTCTAATTGAGTGAATGATAGCACCAGACCAACTAATTTTACGTTAACTCTTTTACTCACCTGGACAATTGCCTGAGGCTGGGAATATTACCATATTCTATCAGCAATTTTCCCAACAGAATTGGAGTTTTATTTGCATCAATTCTTTCTGAGGGATAAGTTCTAATTTTGCTATTCCCTTAATCGTCACCCACCAGGTTATTTGGGTAAAGGGCGTAATTACAAAAATGCTTATCTGTAAATAAGTCCAATCCTTTTCCATGTATCCTTTTACTTGAGAACTCATGCTCTGAATCTAATTTTTGATCTGGCCATATACCTTTTTGTAGTATCTTAGTTTTGATTAATTTGCAGGCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAA-CCTATCAAGTTAT</genome_strand>
        <mrna_strand>CGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCCTATCAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E367819" ref_strand="-" ref_description="SGN-E367819 [TUS-22-C1]">
      <seq>gaaaactatagttggtaaaatattttcaatacaaccatggttccaatcttacagaaatagggggcttcactgtttggtagtcggaaaagcttgtttgacacaagttttgaaaaaacggggaggattatagtatcagataactttgtggggaaacaaataaaatacatactcatcttttgttgcattgtatattcatcgcgcagttatggaatgtattttttactctcccagactgcagatttgctgagttgtgctggataaaaaaaggtgaaagctaaagtcaaaaaaaatggcggaaaatcattcctcattgcatcaaggggactatgtggaaaaaaaaaaaaaaaaaaaaatagtaaatgttttgaaaataggtccaattccatccatcgatttcaatggaattgtattgtatctttttctttttggtgtaaacaaacaaaaataaaaggaactaaagcttgtaaatactttaggctctctgtaattagttatcttccttattttcttcttttgaaggtctccaacatatccttaatgttgaggaatacaacattactagtttcaaaaaaaaaataataataataaaaaagttggtggttctttcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="29169" stop="110790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29469" g_stop="30087" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30088" i_stop="30296" i_length="209">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.875" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30297" g_stop="30319" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="642" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E367819" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367819" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29469" e_stop="30087"/>
          <exon e_start="30297" e_stop="30319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTTACTCTCACAGACTGCAGATCTGCTGAGTTGTGCTGGATAAGAAGAGGTGAAAGCTAGAGTCAGAAGAGATGGCGGAAAATCATTCCTCATTGCATCAAGGGGACTATGTGGAGAGAGAGAGAGAGAGAGAAATAGTAGATGTTTTGAAGATAGGTCCAATTCCATCCATCGATTTCAATGGAATTGTATTGTATCTTTCTCTTTTTGGTGTAAACAAGCAGAGATAAGAGGAACTAGAGCTTGTAGATACTTTAGGCTCTCTGTAATTAGTTATCTTCCTTATTCTCTTCTTTTGAAGGTCTCCAACATATCCTTAATGTTGAGGAATACAACATTACTAGTTTCAAAAAAAAAATAATAATAATAAGAAAGTTGGTGGTTCTTTCATTAATTTATAACATTGCAATGCTTGTTGTTATTGATACAGCTGAATTGCCTCTCCCAGATGAAAGGTAAAATTGCCTTCTGTATCGCGTTTCCCCTTATCTAAACTAGTTCATTTAGAGTTGTTGTGAGTTGATATGTGATCTTTATTATTCTTCCTTGATTTGTACTACAGATACATTTGCTCTCGAGATGGTTTATTGTTAGTTTTTGACTTATATAGAAAGAAAAATTCAAAGAGATGAA</genome_strand>
        <mrna_strand>GAAAACTATAGTTGGTAAAATATTTTCAATACAACCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAAAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAAATAAAATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTTACTCTCCCAGACTGCAGATTTGCTGAGTTGTGCTGGATAAAAAAAGGTGAAAGCTAAAGTCAAAAAAAATGGCGGAAAATCATTCCTCATTGCATCAAGGGGACTATGTGGAAAAAAAAAAAAAAAAAAAAATAGTAAATGTTTTGAAAATAGGTCCAATTCCATCCATCGATTTCAATGGAATTGTATTGTATCTTTTTCTTTTTGGTGTAAACAAACAAAAATAAAAGGAACTAAAGCTTGTAAATACTTTAGGCTCTCTGTAATTAGTTATCTTCCTTATTTTCTTCTTTTGAAGGTCTCCAACATATCCTTAATGTTGAGGAATACAACATTACTAGTTTCAAAAAAAAAATAATAATAATAAAAAAGTTGGTGGTTCTTTCCTTTAAAAAAAA.................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E610693" ref_strand="-" ref_description="SGN-E610693 [57859]">
      <seq>aattctatcagactattacggaaacacagggaaattgacatggatttattcattgggtacgtgtaacatcaacgggaagtttgattcaaaaaccattgaactgattctgggaacttatcagcctgctgctctgttattgttaaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttggtcagattgcttcaatccctttcatgtgccaagtataaaattctgatcaaggagcctagcaatagaactgtttcgtcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtggtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatgaagagtcggaaagttcttccccatcaacaactagtgttggagtgtgttgagcagttgagccgaatgtttaagcctgacttcaaagcaatcaaaaagagaattgaagatctcatcactagagattacttggaaagagacaaagagaacccaaatttgttcaagtatttagcctgaagcaataatctggatgctcggctgagattttttttgttctctgcacatcacattgaatacaactaacttgcttctccatgtcacttgatagggatattgtagcacatataatttttctaacttttgcctataaaaaaaaaaaaaaaaaaaaactcgaactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34348" stop="19348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34048" g_stop="33930" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33846" g_stop="33628" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="340" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33535" g_stop="33368" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="508" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32202" g_stop="31973" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="743" r_length="235" r_score="0.891"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31972" i_stop="31706" i_length="267">
            <donor d_prob="0.000" d_score="0.81"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31705" g_stop="31670" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="779" r_length="36" r_score="0.472"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E610693" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610693" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34048" e_stop="33930"/>
          <exon e_start="33846" e_stop="33628"/>
          <exon e_start="33535" e_stop="33368"/>
          <exon e_start="32202" e_stop="31973"/>
          <exon e_start="31705" e_stop="31670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTATCAGACAAAAAC-GAAACACA-GGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAAT---AC-AACTGGCTTCTCCATGTCACTTAATAGGG--ATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTCATTTTTCAGTTGCAACCCTTATATTTTGATTAACATTAGCATATGCCACCTCCTGCAAAATGTACTATCATCAACACAAAAATCAGCTCTCACATAATTTGGCTAGCTGAAGGAGTTTTTTTGTATATTAAATCGTTACAGTGTTAAAGAATGACAAAAGTTCCACATCGGTGGTTT</genome_strand>
        <mrna_strand>AATTCTATCAGACTATTACGGAAACACAGGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG...................................................................................CCTGCTGCTCTGTTATTGTTAAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGGTCAGATTGCTTCAATCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAGCCTAGCAATAGAACTGTTTCGTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTGGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCCCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACTTCAAAGCAATCAAAAAGAGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCAAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGGATGCTCGGCTGA-GATTTTTTTTGTTCTCTGCACATCACATTGAATACAACTAACTTGCTTCTCCATGTCACTTGATAGGGATATTGTAGCACATATAATTTTTCTAACTTTTGCCTATAA...........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACTCGAACTAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E256804" ref_strand="-" ref_description="SGN-E256804 [cLEG-40-I6]">
      <seq>cgtgcgcattatgaagagtgggaaagttcttcctcatcaacaattagtgttggagtgtgttgagcagttgagccgaatgtttaagcctgacttcaaagcaatcaaaaagcgaattgaagatctcatcactagagattacttggaaagagacaaagagaacccgaatttgttcaagtatttagcctgaagcaataatctgtgtgctcggctgatttttttttttgttctctgcacatcacattgaatacaactggcttctccatgtcacttaatagggattgtagcacagataatttttcttacttttgcctagtagtaggaactgtgccagttattgggtatcacaccaccttcatttttcgtcaagaagttggcggaaactttgctgtctttatagtacttcctccatttcaaattaattgaattggtgagatattattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="33752" stop="31546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33452" g_stop="33368" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32202" g_stop="31847" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="441" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="451"/>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E256804" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256804" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33452" e_stop="33368"/>
          <exon e_start="32202" e_stop="31847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</genome_strand>
        <mrna_strand>CGTGCGCATTATGAAGAGTGGGAAAGTTCTTCCTCATCAACAATTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E551337" ref_strand="-" ref_description="SGN-E551337 [TUS-54-K20]">
      <seq>gaagagttggaaaattttttcttatcaacaaataatgttggagtgtgttgagccgttgagccgaatgttttagcctgactttaaagccatcaaaaagggaattgaagatttcctccctagagatttcttggaaagagacaaagagaacccgaatttgttcaagtttttagcctgaagcaattatttgtgtgcttgggtgatttttttttttgttctttgcacatcacattgaatacaactggcttctccatgtcacttaatagggattgtagcacagataatttttcttacttttgcctagtagtaggaactgtgccagttattgggtatcaccccaccttcatttttcgtcaagaagttggcggaaactttgctgtctttatagtacttcctccatttcaaattaattgaattggtgagatattattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="33740" stop="31546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33440" g_stop="33368" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32202" g_stop="31847" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="429" r_length="356" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E551337" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33440" e_stop="33368"/>
          <exon e_start="32202" e_stop="31847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</genome_strand>
        <mrna_strand>GAAGAGTTGGAAAATTTTTTCTTATCAACAAATAATGTTGGAGTGTGTTGAGCCGTTGAGCCGAATGTTTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACTTTAAAGCCATCAAAAAGGGAATTGAAGATTTCCTCCCTAGAGATTTCTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTTTTTAGCCTGAAGCAATTATTTGTGTGCTTGGGTGATTTTTTTTTTTGTTCTTTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACCCCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E267205" ref_strand="-" ref_description="SGN-E267205 [cLEI-4-K4]">
      <seq>atgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcctcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatgaagagtcggaaagttcttcctcatcaacaactagtgttggagtgtgttgagcagttgagccgaatgtttaagcctgacttcaaagcaatcaaaaagcgaattgaagatctcatcactagagattacttggaaagagacaaagagaacccgaatttgttcaagtatttagcctgaagcaataatctgtgtgctcggctgatttttttttttttgttctctgcacatcacattgaatacaactggcttctccatgtcacttaatagggattgtagcacagataatttttcttacttttgcctagtagtaggaactgtgccagttattgggtatcacaccaccttcatttttcgtcaagaagttggcggaaactttgctgtctttatagtacttcctccatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34036" stop="31575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33736" g_stop="33628" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33535" g_stop="33368" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="277" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32202" g_stop="31875" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="607" r_length="330" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E267205" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33736" e_stop="33628"/>
          <exon e_start="33535" e_stop="33368"/>
          <exon e_start="32202" e_stop="31875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGA--TTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCA</genome_strand>
        <mrna_strand>ATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCCTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E613365" ref_strand="-" ref_description="SGN-E613365 [63138]">
      <seq>catgtgcccaagtataaaattctgatcaaggagcctagcaatagaactgtttcgtcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtggtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatgaagagtcggaaagttcttccccatcaacaactagtgttggagtgtgttgagcagttgagccgaatgtttaagcctgatttcaaagcaatcaaaaagagaattgaagatctcatcactagagattacttggaaagagacaaagagaacccaaatttgttcaagtatttagcctgaagcaataatctgggtgctcggctgagatttttttgttctctgcacgtcacattgaatacaactaacttgcttctccatgtcacttgatagggatattgtagcacagataatttttctgacttttgcctataagtagggaactgtgccagttcttagatatcacaccacctttattttttgtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34037" stop="31619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33737" g_stop="33628" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33535" g_stop="33368" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="279" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32202" g_stop="31919" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="568" r_length="289" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E613365" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33737" e_stop="33628"/>
          <exon e_start="33535" e_stop="33368"/>
          <exon e_start="32202" e_stop="31919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTG-CCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAAT---AC-AACTGGCTTCTCCATGTCACTTAATAGGG--ATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTA-GGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAA</genome_strand>
        <mrna_strand>CATGTGCCCAAGTATAAAATTCTGATCAAGGAGCCTAGCAATAGAACTGTTTCGTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTGGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCCCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCAAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGGGTGCTCGGCTGA--GATTTTTTTGTTCTCTGCACGTCACATTGAATACAACTAACTTGCTTCTCCATGTCACTTGATAGGGATATTGTAGCACAGATAATTTTTCTGACTTTTGCCTATAAGTAGGGAACTGTGCCAGTTCTTAGATATCACACCACCTTTATTTTTTGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E241804" ref_strand="+" ref_description="SGN-E241804 [cLED-27-C21]">
      <seq>ggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatgaagagtcggaaagttcttcctcatcaacaactagtgttggagtgtgttgagcagttgagccgaatgtttaagcctgacttcaaagcaatcaaaaagcgaattgaagatctcatcactagagattacttggaaagagacaaagagaacccgaatttgttcaagtatttagcctgaagcaataatctgtgtgctcggctgattnttttttttgttctctgcacatcacattgaatacaactggcttctccatgtcacttaataggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34153" stop="31710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33941" g_stop="33930" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33846" g_stop="33628" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="231" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33535" g_stop="33368" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="399" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32202" g_stop="32010" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="592" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E241804" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33941" e_stop="33930"/>
          <exon e_start="33846" e_stop="33628"/>
          <exon e_start="33535" e_stop="33368"/>
          <exon e_start="32202" e_stop="32010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAGGTATGCAACCTTCTATCTTTAATGAAATAGATCACTTTTGGAAGGTTGATATAATTTCCACGCTTTATAAACATGACATTCAATTTGATACTGGAGGGCTATATATGACACTGTGTTGGGGCTATTTATCACCTTCTGGGCTCGTAATGACAGATAATGTAGCAATTCTTTTCCTTGTTTTGACAAATTGTTAATAACTTGGATTACGCTATCGTGGTATCGCCTCATTACTCGACATCTTTCTTTCAGGATCACGGTCTTTGGGGTTTTTGGTGTTGAAAGTAATCTTAAAGATTCAATTACCCGGAATAGTGTTTGGTAAAATAGATGGAGGGGTTGCATTTAGTTTTACTTTATCAACCTATTATATTTTAAAACAGTCTTATTTGACTTGAGTGAAATTAGTGGTTTTCTTTCCCAACGAATATAACTTGACAGAATGACAGAAACACCAATTTTACCTTTTCCTTCTATCTTCTAATTGCCTCCATCTCAATTTGTTCCATAGTTTTGCTTATTGAGACCGAACTCATTAGGAATTTCTTAACCTCGACTTTTTCAACATTCATTGTTGAGGCGAAGAATCTTTAAGTTGAGATATCTTTCAGTAATTTCCAACCTCTAAATATACTATTTGGTGACAATCTTCCACTTCCAATTTCAATATGTGAATTGTTCGGCAGTTTGTATAGATAGTTCATTCTCTTCCTTTCCATTTGCTTCCCTATCATTTATCATTTTTGTTTTCTTTCTAACCGATGTAACACAAGAGATGAATGGGAGGAGGCAAACCACTTTTTGTCTGTAGTTTCTTCATCCATGTTTTCAACTTCCTCAATGGATAAAGCTATGTTGGTCCTAGAAGAAATTGTATAACTGCGGGAATCAGGTTTGGAGTTGTGTGATTTAGTCTAGTTCATGACCTTGAGGATTCATGTTCTCGAAAAGCTAGAATTTACCCTACAAATTTGAAAAAACTATATGAGATGAGATGAACACAGACAAATGTGATTGGGCTTTTTGCTCAAATTTATAATGATCTTGCTGTGCCATTTAATCGCTCCATTTCCTTTTGAAGTGTCTACTGCAAATCTAACCTGAAGATAGTTATTAGTTCTAGTTATTGATTTTATATTAATATCATTAATTTTGTTTATTTGTCCAGCCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGA</genome_strand>
        <mrna_strand>GGAACTTATCAG...................................................................................GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTNTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E256254" ref_strand="+" ref_description="SGN-E256254 [cLEG-37-N1]">
      <seq>aacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattctatcagacaaaaacgaaacacaggaaattgacatggatttattcattgggtacgtgtaacatcaacgggaagtttgattcaaaaaccattgaactgattctgggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34588" stop="33140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34288" g_stop="34184" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34073" g_stop="33930" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="249" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33846" g_stop="33628" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="468" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33535" g_stop="33440" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E256254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34288" e_stop="34184"/>
          <exon e_start="34073" e_stop="33930"/>
          <exon e_start="33846" e_stop="33628"/>
          <exon e_start="33535" e_stop="33440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTAAGAGGAGCTTTTCTTTATAATTTGAAAATCCACTTTCTGTTTGCTGATATGAGGTTTTTCTTCTGAATTAATGAATGACATAACCTCTGTTGTGTTATTTGCATCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATG</genome_strand>
        <mrna_strand>AACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG..............................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG...................................................................................GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E235645" ref_strand="+" ref_description="SGN-E235645 [cLED-15-A12]">
      <seq>ggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctgctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34153" stop="33151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33941" g_stop="33930" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33846" g_stop="33628" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="231" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33535" g_stop="33451" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="316" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E235645" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33941" e_stop="33930"/>
          <exon e_start="33846" e_stop="33628"/>
          <exon e_start="33535" e_stop="33451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCG</genome_strand>
        <mrna_strand>GGAACTTATCAG...................................................................................GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTGCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E321560" ref_strand="+" ref_description="SGN-E321560 [cTOB-25-I5]">
      <seq>ttaacaaagctaaagcaacagtgtggtgggcagttcacatcaaagatggaggggatggtgacagacttgactttggctagggaaaatcaaaaccattttcaagaatatctcagcaacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattctatcagacaaaaacgaaacacaggaaattgacatggatttattcattgggtacgtgtaacatcaacgggaagtttgattcaaaaaccattgaactgattctgggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaagtagtcgaagatgtagacaaagatagacgttatgcaattgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="34787" stop="33157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34487" g_stop="34431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34345" g_stop="34184" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="219" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34073" g_stop="33930" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="363" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33846" g_stop="33628" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="582" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33535" g_stop="33457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="660" r_length="78" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E321560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34487" e_stop="34431"/>
          <exon e_start="34345" e_stop="34184"/>
          <exon e_start="34073" e_stop="33930"/>
          <exon e_start="33846" e_stop="33628"/>
          <exon e_start="33535" e_stop="33457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATGGTGAGGAAACAGAATATCTTTTCATAGTTTATCCATTCCCATTAAAATGTTCTATTAAAATTTGTGGATGGCAACTCAAAAACAGGTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTAAGAGGAGCTTTTCTTTATAATTTGAAAATCCACTTTCTGTTTGCTGATATGAGGTTTTTCTTCTGAATTAATGAATGACATAACCTCTGTTGTGTTATTTGCATCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTATAGATAAAGAATCCTATTTTTTTTAGTGATGCTTCATGAACACACTATAGATACCTATTCCTAATGGAATGTTTTATTGCACTATCCAGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCT</genome_strand>
        <mrna_strand>TTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG.....................................................................................GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG..............................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG...................................................................................GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG............................................................................................GTCCCATTACCTCCTGTGGATGAAAGGAAAAA-GTAGTCGAAGATGTAGACAAAGATAGACGTTATGCAATTGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E275405" ref_strand="+" ref_description="SGN-E275405 [cLEN-10-F19]">
      <seq>tccttgcttctttttgtgataatattcttaagaaaggtgggagcgaaaaactcagtgatgatgatattgaggagaccttggataaggtggtcaagcttctcgcttatattagtgataaagacctttttgcagagttctacaggaagaagctttctcgtcgactgctcttcgataaaagtgccaatgatgaccacgaaaggcttatcttaacaaagctaaagcaacagtgtggtgggcagttcacatcaaagatggaggggatggtgacagacttgactttggctagggaaaatcaaaaccattttcaagaatatctcagcaacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattctatcagacaaaaacgaaacacaggaaattgacatggatttattcattgggtacgtgtaacatcaacgggaagtttgattcaaaaaccattgaactgattctgggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaattcaagagtcagttaaatttggctgatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="35191" stop="33463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34891" g_stop="34806" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34715" g_stop="34660" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="142" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34551" g_stop="34431" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="263" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34345" g_stop="34184" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="425" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34073" g_stop="33930" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="569" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33846" g_stop="33763" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="653" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E275405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34891" e_stop="34806"/>
          <exon e_start="34715" e_stop="34660"/>
          <exon e_start="34551" e_stop="34431"/>
          <exon e_start="34345" e_stop="34184"/>
          <exon e_start="34073" e_stop="33930"/>
          <exon e_start="33846" e_stop="33763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAGGTATAGCATGCACTTTAAATCACTCCATCTCCTGGAAGTCCATCTTTCGGCCAAGTGATGTTGTCATTATAATGGTTTGAATTTTTGTAGGTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAGGTGGGTTAGATAGTCCAACAGTTTTTTTTGATATAGTTACCTTAGGTAGTTACCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATGGTGAGGAAACAGAATATCTTTTCATAGTTTATCCATTCCCATTAAAATGTTCTATTAAAATTTGTGGATGGCAACTCAAAAACAGGTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTAAGAGGAGCTTTTCTTTATAATTTGAAAATCCACTTTCTGTTTGCTGATATGAGGTTTTTCTTCTGAATTAATGAATGACATAACCTCTGTTGTGTTATTTGCATCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAGGTGACTACTCTCTCTAATGATTCCATTAACTATCCCTGCTGGTTACAATACACTGATGGATTTATGATGTCTGCTTTTTTCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGAC</genome_strand>
        <mrna_strand>TCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAG..........................................................................................GTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAG............................................................................................................GAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG.....................................................................................GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG..............................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG...................................................................................GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAATTCAAGAGTCAGTTAAATTTGGCTGATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E348210" ref_strand="+" ref_description="SGN-E348210 [cTOF-27-E19]">
      <seq>tatgttacgaactgttttgctaataactctctctttataaggctctcaaggaggcatttgaggtcttctgcaacaaaattgtatctggttgttcaagtgcagagctccttgcttctttttgtgataatattcttaagaaaggtgggagcgaaaaactcagtgatgatgatattgaggagaccttggataaggtggtcaagcttctcgcttatattagtgataaagacctttttgcagagttctacaggaagaagctttctcgtcgactgctcttcgataaaagtgccaatgatgaccacgaaaggcttatcttaacaaagctaaagcaacagtgtggtgggcagttcacatcaaagatggaggggatggtgacagacttgactttggctagggaaaatcaaaaccattttcaagaatatctcagcaacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattctatcagacanaaacgaaacacaggaaattgacatggatttattcattgggtacgtgtaacatcaacggggagtttgattcaaaaaccattgaactgattctgggaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="35388" stop="33632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35088" g_stop="35047" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35046" i_stop="34956" i_length="91">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34955" g_stop="34806" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="191" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34715" g_stop="34660" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="247" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34551" g_stop="34431" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="368" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34345" g_stop="34184" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="530" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34073" g_stop="33932" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="672" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E348210" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35088" e_stop="35047"/>
          <exon e_start="34955" e_stop="34806"/>
          <exon e_start="34715" e_stop="34660"/>
          <exon e_start="34551" e_stop="34431"/>
          <exon e_start="34345" e_stop="34184"/>
          <exon e_start="34073" e_stop="33932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTACGAACTGTTTTGCTAATAACTCTCTCTTTCATAAGGTATATTCTGTTGTTAACAATTGTATGCTGATCTCTTTTACTTCAAAGTTATTTGTCAGTGTTTCTGATATCTAAAGTTTGACATATACAGGCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAGGTATAGCATGCACTTTAAATCACTCCATCTCCTGGAAGTCCATCTTTCGGCCAAGTGATGTTGTCATTATAATGGTTTGAATTTTTGTAGGTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAGGTGGGTTAGATAGTCCAACAGTTTTTTTTGATATAGTTACCTTAGGTAGTTACCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATGGTGAGGAAACAGAATATCTTTTCATAGTTTATCCATTCCCATTAAAATGTTCTATTAAAATTTGTGGATGGCAACTCAAAAACAGGTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTAAGAGGAGCTTTTCTTTATAATTTGAAAATCCACTTTCTGTTTGCTGATATGAGGTTTTTCTTCTGAATTAATGAATGACATAACCTCTGTTGTGTTATTTGCATCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATC</genome_strand>
        <mrna_strand>TATGTTACGAACTGTTTTGCTAATAACTCTCTCTTT-ATAAG...........................................................................................GCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAG..........................................................................................GTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAG............................................................................................................GAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG.....................................................................................GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG..............................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACANAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGGAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E255936" ref_strand="+" ref_description="SGN-E255936 [cLEG-35-E15]">
      <seq>gtcaagccttctcgcttatattagtgataaagaacctttttgccagagttctaccaggtgggttagatagtccaaccagttttttttgatatagttacccttaggtagttacccttaggttgaattttcattttaccgttcggaatgtccattgtcttggtgtgataggaagaagctttctcgtcgactgctcttcgataaaagtgccaatgatgaccacgaaaggcttatcttaaccaaagctaaagcaacagtgtggtgggcagttcacatcaaagatggaggggatggtgacagacttgactttggctagggaaaatcaaaaccattttcaagaatatctcagcaacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="35012" stop="33754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34712" g_stop="34431" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34345" g_stop="34184" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="452" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34073" g_stop="34054" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="472" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E255936" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34712" e_stop="34431"/>
          <exon e_start="34345" e_stop="34184"/>
          <exon e_start="34073" e_stop="34054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAG-CTTCTCGCTTATATTAGTGATAAAG-ACCTTTTTG-CAGAGTTCTA-CAGGTGGGTTAGATAGTCCAA-CAGTTTTTTTTGATATAGTTACC-TTAGGTAGTTA-CCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAA-CAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATGGTGAGGAAACAGAATATCTTTTCATAGTTTATCCATTCCCATTAAAATGTTCTATTAAAATTTGTGGATGGCAACTCAAAAACAGGTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTAAGAGGAGCTTTTCTTTATAATTTGAAAATCCACTTTCTGTTTGCTGATATGAGGTTTTTCTTCTGAATTAATGAATGACATAACCTCTGTTGTGTTATTTGCATCAGGTGAAGTGTGTAGAAGTCTT</genome_strand>
        <mrna_strand>GTCAAGCCTTCTCGCTTATATTAGTGATAAAGAACCTTTTTGCCAGAGTTCTACCAGGTGGGTTAGATAGTCCAACCAGTTTTTTTTGATATAGTTACCCTTAGGTAGTTACCCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACCAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG.....................................................................................GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG..............................................................................................................GTGAAGTGTGTAGAAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E275344" ref_strand="+" ref_description="SGN-E275344 [cLEN-10-G21]">
      <seq>tccttgcttctttttgtgataatattcttaagaaaggtgggagcgaaaaactcattgatgatgatattgaggagaccttggataaggtggtcaagcttctcgcttatattagtgataaagacctttttgcggagttctacaggaagaagctttctcgtcgactgctcttcgataaaagtgccaatgatgaccaccaaaggcttatcttaacaaagctaaagcaacagtgtggtgggcagttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="35191" stop="34148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34891" g_stop="34806" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90">
            <donor d_prob="0.780" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34715" g_stop="34660" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="142" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34551" g_stop="34448" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="246" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E275344" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34891" e_stop="34806"/>
          <exon e_start="34715" e_stop="34660"/>
          <exon e_start="34551" e_stop="34448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAGGTATAGCATGCACTTTAAATCACTCCATCTCCTGGAAGTCCATCTTTCGGCCAAGTGATGTTGTCATTATAATGGTTTGAATTTTTGTAGGTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAGGTGGGTTAGATAGTCCAACAGTTTTTTTTGATATAGTTACCTTAGGTAGTTACCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACAT</genome_strand>
        <mrna_strand>TCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCATTGATGATGATATTGAGGAGACCTTGGATAAG..........................................................................................GTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCGGAGTTCTACAG............................................................................................................GAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACCAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E333127" ref_strand="+" ref_description="SGN-E333127 [cTOD-19-N15]">
      <seq>tcaggagagcagcaggtcttcgttagaaagttgattgagcttcacgataagtatatggcttatgttacgaactgttttgctaataactctctctttcataaggctctcaaggaggcatttgaggtcttctgcaacaaaattgtatctggttgttcaagtgcagagctccttgcttctttttgtgataatattcttaagaaaggtgggagcgaaaaactcagtgatgatgatattgaggagaccttggataaggaggtcaagcttctcgcttatattagtgataaagacctttttgcagagttctacaggaagaagctttctcgtcgactgctcttctataaaagtgcccatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="35439" stop="34203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35227" g_stop="35213" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35212" i_stop="35134" i_length="79">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35133" g_stop="35047" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="102" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35046" i_stop="34956" i_length="91">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34955" g_stop="34806" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="252" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34715" g_stop="34660" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="308" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34551" g_stop="34503" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="357" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E333127" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35227" e_stop="35213"/>
          <exon e_start="35133" e_stop="35047"/>
          <exon e_start="34955" e_stop="34806"/>
          <exon e_start="34715" e_stop="34660"/>
          <exon e_start="34551" e_stop="34503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAGAGCAGCAGGTAAAACCATATTCCTTTATTCTGATTTCACTTATATGTAATGTAAATATATTTACCATGGATTCCATCCCTTCCGCAGGTCTTCGTTAGAAAGTTGATTGAGCTTCACGATAAGTATATGGCTTATGTTACGAACTGTTTTGCTAATAACTCTCTCTTTCATAAGGTATATTCTGTTGTTAACAATTGTATGCTGATCTCTTTTACTTCAAAGTTATTTGTCAGTGTTTCTGATATCTAAAGTTTGACATATACAGGCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAGGTATAGCATGCACTTTAAATCACTCCATCTCCTGGAAGTCCATCTTTCGGCCAAGTGATGTTGTCATTATAATGGTTTGAATTTTTGTAGGTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAGGTGGGTTAGATAGTCCAACAGTTTTTTTTGATATAGTTACCTTAGGTAGTTACCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGAC</genome_strand>
        <mrna_strand>TCAGGAGAGCAGCAG...............................................................................GTCTTCGTTAGAAAGTTGATTGAGCTTCACGATAAGTATATGGCTTATGTTACGAACTGTTTTGCTAATAACTCTCTCTTTCATAAG...........................................................................................GCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAG..........................................................................................GAGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAG............................................................................................................GAAGAAGCTTTCTCGTCGACTGCTCTTCTATAAAAGTGCCCATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E337443" ref_strand="+" ref_description="SGN-E337443 [cTOE-11-A18]">
      <seq>agtttcggaaaaacagaatccatccatcaacgggaaggcgagagggcgattgtgattcagttccccggtgatcgatccatttctccggtggacgtaaaatacgtgcttctaagatggcactgagccagatgaaggttattgagttggaggaaggatgggaatttatgcagaggggaatcactaaattgaagaaaattttagaaggacaacaacattctttcagctctgaagagtacatgatgctctacacaactatatataacatgtgcacacagaagccgccaaatgattactcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="39613" stop="37590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39313" g_stop="39227" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39226" i_stop="38324" i_length="903">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38323" g_stop="38161" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="250" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38160" i_stop="37940" i_length="221">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37939" g_stop="37890" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="300" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E337443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39313" e_stop="39227"/>
          <exon e_start="38323" e_stop="38161"/>
          <exon e_start="37939" e_stop="37890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCGGAAAAACAGAATCCATCCATCAACGGGAAGGCGAGAGGGCGATTGTGATTCAGTTCCCCGGTGATCGATCCATTTCTCCGGTAAGCAATTAGGAGATTATGATTTAGCTTTGTTTTGCTGATTTTTGCGGTTGTTAACTTTTCTAGGGTTTAAGATCGTGCTAAAAGCTTGTTTTGTATAGTCGTTACTCATCTTCTCAGCGTGTAATCGTGTGTTTGAATAGATAGGATCACTCGTTGTGGGTTTTTAGCGTTTTTCTCGATGATTGACTGTTTTTTAGTAAAGAATTATGGTTTAATTAGTTTATATTCTCATAATAATTATGAGTTTGATTTGAATTCATGCAAATCCTAATGAAATTAACCAAAAAGCTCAATCAAAATCAGAAAATAGAACTTTGGCATTAATTAATACTTAGATGGAGAACGATAAGAGGGATGGGAACAAAAAGGTAGCGGAAAGCAAATCAGAAATCTGAATTGGAGATGTCTACTTGGGTATGTGATGGAGTTAATTAGTAAAATAGTGTAAACTAAATAATGAAATTATGAGATAAGGACATAGTTGGAAACAGAAATAACATGAGAGCTTATGATGTTGGAGTTCTATTAATGCAAACTGTGATAGAAAAATTTCTACTGTGTTAGAAAATTTCTATCTTAAAATGCTAGAGTGCTGATAAATTTCTGCGAACCTGTATTAAGCTGACTGTAAAAGTCGCTGCTTTTTGTTGTCACCTGAATACATTGATTATAAACAACATTTTTATCATTGGAACTTGAAAGCTGAATTGGCATTGTATTTTTAATTGAGAAGTTGCTTCTTGTTGCTGTCCTGGTGTACATTAAGGATATTTGTTTTCTTCTTAATCGGCATTGTTTTTGTTAATGACTATTAGTTGGGTTGTGATTAGCTTTTCCCGTATGATGCTTTTTATATGGTGTAGCGTTGTGATTATATGTGATTTTCAATTGGTCATATAGGTGGACGTAAAATACGTGCTTCTAAGATGGCACTGAGCCAGATGAAGGTTATTGAGTTGGAGGAAGGATGGGAATTTATGCAGAGGGGAATCACTAAATTGAAGAAAATTTTAGAAGGACAACAACATTCTTTCAGCTCTGAAGAGTACATGATGCTCTACACGTATCCTTAGGGTTTCGTGTGCTTGAAGTTTGTCTTTATATATAAAATATTTGTTCTTTAATATATATGTACGCACATTGTTTTATTATTTTCAATCTTTAAGATATGGTTAACTCTGCCTACAACCGCTTTACTCTCATGGTGTCTTGAACAACTAACTTCTTGGTTATTAGTGAACTACACTTAACATGGAAGGGAGTTTTTCCTTAATTGAAATGTAGAACTATATATAACATGTGCACACAGAAGCCGCCAAATGATTACTCACAAC</genome_strand>
        <mrna_strand>AGTTTCGGAAAAACAGAATCCATCCATCAACGGGAAGGCGAGAGGGCGATTGTGATTCAGTTCCCCGGTGATCGATCCATTTCTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGTAAAATACGTGCTTCTAAGATGGCACTGAGCCAGATGAAGGTTATTGAGTTGGAGGAAGGATGGGAATTTATGCAGAGGGGAATCACTAAATTGAAGAAAATTTTAGAAGGACAACAACATTCTTTCAGCTCTGAAGAGTACATGATGCTCTACAC.............................................................................................................................................................................................................................AACTATATATAACATGTGCACACAGAAGCCGCCAAATGATTACTCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="40616" stop="39561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40316" g_stop="39871" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40316" e_stop="39871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAAATGACCAATTTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATTTAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAAC-AAATAAGAATAAGAAATTCAAATAATTATAATAAAA-AAATCAATAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATAATTTTTTTTAAAAAAATTTAGAAGTAACAAATATAAATTTAAAACCATTTTTTTAGCTTCCGTTAAATGAAGGGTAAATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTATAACGAGAGATATACCAACTTCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTATT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAA-TTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAA-ATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E406879" ref_strand="+" ref_description="SGN-E406879 [PPI-5-E4]">
      <seq>aacctttttcatcttcggacgtcacgtccctctttgccgtttcatcaaacagttgggggacaaaacaatcctcttcttcttcccccatttacatagctgctgtggaaaccctagaattaatcctgatggaattgagctttgttcctcttcatcaattggttgttgaatctgatgcgtgaattggttcgatctattgcttcgaggtcggtcggaattttcgattggcggagtcgacaatggaaaatcaattacaattggccttgaccagtcctacgacgccgttctcgagcttgttcgactcgcagaaggaaatcctcaatagccagatttatcagctccaaaacatcgttgtacaacaatgtaacctcactggcgtcaatccactctctcaagagatggctgctggagctctttcaataaaaattggcaaaaggccaagggatctcctaaaccccaaggcaatcaagtatatgcaatctattttctctgtcaaagatgcaatcaacaagaaggaaacgcgtgaaatcagtgctctttttggtgtcacagtcacacaggttcgggacttctttacagctcagcgcacgagagttagaaagttcctgangttgtctagagagaagcctatcataaccaatttagctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="44854" stop="71221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45148" g_stop="45481" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="398" r_length="333" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45482" i_stop="47196" i_length="1715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47197" g_stop="47224" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="426" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47225" i_stop="47761" i_length="537">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47762" g_stop="47892" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="557" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47893" i_stop="48588" i_length="696">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48589" g_stop="48679" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="648" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E406879" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45148" e_stop="45481"/>
          <exon e_start="47197" e_stop="47224"/>
          <exon e_start="47762" e_stop="47892"/>
          <exon e_start="48589" e_stop="48679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTCTTCTTCTTCTTCCCCATTTACATAATTGCTGTGGAAACCCTAGGATTAATCAT-ATGGAATTGAGCTTTGTTCCTCTTCTTAAATTGGTTGTTGCATCTGATGCGTGAATTGGTTTGATCTATTGCTTCGACGTCGGTCGGAATTTTCGATTAGCGGAGGGTACAATGGAAAATCAATTGCAATTGGCCTTGACCAGTCCTACGACGCCGTTCTCGAGCTTGTTCGAGTCGCAGAAGGAAATCCTTAATAGCCAGATTTATCAGCTCCAGAACATAGTTGTGCAACAATGTAACCTCACTGGCGTCAATCCTCTCTCTCAAGAGATGGTTCGTTTTCTTAATCTTTTTTTTTTCTTCTGAATTTGCCTCTTGTACTTTGTTGGTAGTGACTGTTTTAGGAAATGTAGGAACTAGCATTGGTTAAGTTGACACTTCATTATGTTTTATGGTTAACTAGATTAACCTTTTTACAGTACAGAAATGGTAATGGATTTATGTATTTGTAAGTCATAAGTGTAATATAATTGTAAAATTGAAGGATTAATAAATAACTTGAGATGAGCAGTGTGTATGTTGAGGACTAGCATGTCTTATAGTTTCTGTTTATCCAGAAGGATAGTAAAAACAATAGCTACCTTTTGGCATATTTTACATTCAGAAAATTTAAAATCTCCGGTGTGGTTTGTGTGGCAGAATTTATTTCACAGAGAAGAATTCCTTAAGTTTCCAGTTCAATTTTTTAATGGAAGAACTCCTTGACTGCATTCCTTTCCCAATCTTTAATGACCCTCCTAAAATTTATACTAATACCCCTAAAGGTCTTTAAGTAATCAGTATCAGAGTATCTTTCTCTTTACTAATCTATTTACATGTGTATATGCATTCTCTACGGCTATCCCTTCAGACTATACATCCTTCCCAAACCTAACACTAGAGGCATCATTCATCGTAGAGCCAATACATCTATCTACTCGGTCCCTCACCAGAAATCATCCAACGAGTGCTATTCCATTTTTAGTTGATATGAAATTACCCGGTACCTATATAGACTTAGTTACCTGTGTTTGTGGGAGCTAGCAAGTACTAAGCTCCCCAAACACCAGTGTCATTAAAAATTTAGAGCTTGAATGGGTTAACGGATTGAAAAGTAGCCGATGAGCATTGACTGCTGAATTGATTTTATAAATAAGTAGTAATGTATCATATCTTTCTTCTCCCTAAAAAAAGTAATTATGTGTTCGTGTAGAAGTGCCAGAATTAATAAGCAGTTGAAATGTTTGGAAAAGAAGTGTTGATAAACAATTTTTCCATTAAAATGATTAATGTATCCTTAAAGTTATTTTCAAGAATTATATATTAAAAAGTATGTACCAAGGAGAAGAACAAACAACAAAATGTAATGGAAGTGAGAAAAGAGTCCTGTTTTGGGAGGAGTGTTTTGAAAATTTTAGATAGTTTTAGGCAAATTAGAAGTGCTTATTTGCCGAAAAGAGATAAGTTGGGGGTGACCAACTTGTGTCTTATGTTGATTTTGGCTTATAAGCAATTTATGTGTTTACCAAACATGAAGTTAGTGGATATAATATCTTTCGATGACACATTTTCCTCTTGAGATTAATTTCATAATGATCTTCTTAAAAGTGCTATATTGAAAATGAATTATCTCTTTTCTCTTTTGATACAGAGAAATCCATCTGGAGCCAACTCTTAGGACCTACCACAACCTTCGAAACTCGGGGATAATGAGCCCACACCCCTATCTCCTGATTCCTAACCTCTCTCTGTTTCCTCTCTACCAAATTTCCCTTCCTTTCTTCCCTAGAAAATTTCTGATCAATTTCTCCAGTTTGTTTGCTCGTAGTACTACCATAATACATGATTTATAAGTTGGTCACAAACATGAGATTCCTCTGCTGAATTAATTTTTCTATTCTTAGATTCGTACATACAGAGCTACAGTTATTACACGTCATCTCTTTACATTGGGTGATTTGGGAAATTATTTTTGCTGGTGGCTCATTCATTTTTCTTCCGTTGTGCAGGCTGCTGGAGCTCTTTCAATAAAAATTGGTATGTCTCCTTGGCCTAAATTAAAATCATTATGCTTGTGTAGTCGAGTAATAAATTAGTTGACTTGGATCCCTTCTGAGAATGAAAAGATAGTAGGTCATATTGACATGTTCATTTGTTACTCTTATATCATTTTTTGCACATTGATTAAACTATGTGAAGCATGTTACTTTTTTCGGTGGTTCTTTCATTTTATTCTATTTTATTTGCTTTTTACTTGTCATTTTGTTTTTAATTTTCTTTTCTTTTTGCGTATCATTTTTTAAAAAAACTTATTTGCGTTAGTAGTAGTTCTTTTTGTTGCCAAGTATAAAATTGCTATGTACCAGAATTACTTCTCTTGATGTTTAAGGTGAACTTGCTTTATGATCTAAGTTGCTACTGTCATCTTTTTCTTACAAGATGATGCTTCGATCCAAATTATATGTAATGCATCTTTTTAGTTATTAGCGTAAATGATGCTCTTGACTTCTTCAATTTTGTGCAAGCTACTCTGATTCCATTTGTATTCTGTTAGTTTAACATCATCTGTTGCAGGCAAAAGGCCAAGGGATCTCCTAAACCCCAAGGCAATCAAGTATATGCAATCTATTTTCTCTATCAAAGATGCAATCAACAAGAAGGAAACACGTGAAATTAGTGCTCTTTTTGGTGTGACAGTCACACAGGTGTGTCCCTTTTCATAGTCTTTAGTAATCCTTTCTTTATTCTACGTGGTTGTAATTTTGTTTAAAACTTTTCTACATTAGTGAATGTCGATTATTTTAAACGTGATTGGATTCCTTGTCTAGAAATTGAGTTTGGATCATAGATCAATAAGAGCAATGGTTTGACTTGTAAATCTCAGTATCTCTCATTTGTTTCATGAGCAATGGTTTGGCTTGTAAATTTCAGTATCTCACACTTGTTTCATGCTATGATGTGCAATAATCCTAATGGTCATGATTTGTCATTGTTCAAAAGGTTTGTATTTATCCGTGGAACGTCACTCTTAAAAACTATGGAAGGAGCTTATGTTGGTGGCATTTGCATGCTAGTTGCACCATCTTTCTTTAGTTCAGTTTTGCTGTTTTGGGTATTAGGAGCAACCTAGTGCTTTTGAGAACAGGCTATTTCGGAATTATGCACCTCTTTGTGTATGATGATGTAGCTCTTTAGTCCTTAGAAATACATTCTCTTTTCTCCTTCGCTTTTTGGGCGGTTTAGGTATGGACAGATACCTTAATCCCTTCTGCATAGACATTCAGTAGCTCTCCCTGGTGCAATTTAAGCTGGAAGATGATAATAAGATCTGTGCATTCTCCATTTCATCTTCTCTGACAACTTTCACGTTGTTTGTTTGAATACCATCTTTGCATTTGCAGGTTCGAGATTTCTTTGCAGCTCAGCGCACAAGAGTTAGAAAGTTCCTGAGGTTGTCTAGAGAGAAGCCTATCACAACCAATTTATCTATTG</genome_strand>
        <mrna_strand>CAATCCTCTTCTTCTTC--CCCCATTTACATAGCTGCTGTGGAAACCCTAGAATTAATCCTGATGGAATTGAGCTTTGTTCCTCTTCATCAATTGGTTGTTGAATCTGATGCGTGAATTGGTTCGATCTATTGCTTCGAGGTCGGTCGGAATTTTCGATTGGCGGAGTCGACAATGGAAAATCAATTACAATTGGCCTTGACCAGTCCTACGACGCCGTTCTCGAGCTTGTTCGACTCGCAGAAGGAAATCCTCAATAGCCAGATTTATCAGCTCCAAAACATCGTTGTACAACAATGTAACCTCACTGGCGTCAATCCACTCTCTCAAGAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGGAGCTCTTTCAATAAAAATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGCCAAGGGATCTCCTAAACCCCAAGGCAATCAAGTATATGCAATCTATTTTCTCTGTCAAAGATGCAATCAACAAGAAGGAAACGCGTGAAATCAGTGCTCTTTTTGGTGTCACAGTCACACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGGACTTCTTTACAGCTCAGCGCACGAGAGTTAGAAAGTTCCTGANGTTGTCTAGAGAGAAGCCTATCATAACCAATTTAGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E616113" ref_strand="+" ref_description="SGN-E616113 [65919]">
      <seq>gttatcaagaaaatgccattcctaatcattacaatccacatgttgccggacatgtagaaccaggattacaacaggctgcatggagaggaaacagcaactattccgagggagctgggtttgaatcttggagtcctgataatagtcctgttaggcgtcaggaacaggttgcaagatggaattacacacaacctcagatgaatatgagagacaactacagacctgattggtctgcatcgcgtaatcctgggcattattctggttatcgtggtcctgacgatggtggtaataggaggtggggtgacaggagaagataaccttcaaacggctggccatttgattcttttgacgagtgattcattagtgtttacattagagtagaacgttctcagagggggttgcatttttgcaacgtgaaatggttgtaaacttgtaatgtcagcatgtcacatcactttattttgtttcccaattggtacctgtcaacagaaaaatagaaaataggaattcagttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="57227" stop="58342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57527" g_stop="58048" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E616113" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57527" e_stop="58048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAAGAAAATGCCATTCCTAACCATTACAATCCACATGTTACCGGGCATGTAGAACCAGGATTACAACAGGCTACGTGGAGAGGAAACACCAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGTCCTGATGATAGCCCTGTTAGGCGTCAGGAACAGGTTGCAAGATGGAATTACACACAACCTCAGATGAATATGAGAGACAGCTACATACCTAATTGGTCTGCATCGCGTAATCCTGGGCATTATTCTGGCTATCGTGGTCCTGACGATGGTGGTAATAGGAGGTGGGGTGACAGGAGAAGATAACCTTCAAACGGCTGGCCATTTGATTCTTTTGACGTGAGATATTCTTTAGTGTTTACATTAGAGTAGAAAGTTCTCAATAGGGTGTTGCATTTTTGCAACGTGAAATGGTTGTAAACTTATAATGTCAGCATGTCACATCACTTCATTTTGTTTCCCAATTGATACCTGTCAGCAGAAAAATAGAAAATAGAAATTCAGTTCACTTGGG</genome_strand>
        <mrna_strand>GTTATCAAGAAAATGCCATTCCTAATCATTACAATCCACATGTTGCCGGACATGTAGAACCAGGATTACAACAGGCTGCATGGAGAGGAAACAGCAACTATTCCGAGGGAGCTGGGTTTGAATCTTGGAGTCCTGATAATAGTCCTGTTAGGCGTCAGGAACAGGTTGCAAGATGGAATTACACACAACCTCAGATGAATATGAGAGACAACTACAGACCTGATTGGTCTGCATCGCGTAATCCTGGGCATTATTCTGGTTATCGTGGTCCTGACGATGGTGGTAATAGGAGGTGGGGTGACAGGAGAAGATAACCTTCAAACGGCTGGCCATTTGATTCTTTTGAC--GAGTGATTCATTAGTGTTTACATTAGAGTAGAACGTTCTC-AGAGGGGGTTGCATTTTTGCAACGTGAAATGGTTGTAAACTTGTAATGTCAGCATGTCACATCACTTTATTTTGTTTCCCAATTGGTACCTGTCAACAGAAAAATAGAAAATAGGAATTCAGTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E559551" ref_strand="-" ref_description="SGN-E559551 [19066]">
      <seq>caagaaaatgccattcctaatcattacaatccacatgttgccggacatgtagaaccaggattacaacaggctgcatggagaggaaacagcaactattccgagggagctgggtttgaatcttggagtcctgataatagtcctgttaggcgtcaggaacaggttgcaagatggaattacacacaacctcagatgaatatgagagacaactacagacctgattggtctgcatcgcgtaatcctgggcattattctggttatcgtggtcctgacgatggtggtaataggaggtggggtgacaggagaagataaccttcaaacggctggccatttgattcttttgacgagtgattcattagtgtttacattagagtagaacgttctcagagggggttgcatttttgcaacgtgaaatggttgtaaacttgtaatgtcagcatgtcacatcactttattttgtttcccaattggtacctgtcaacagaaaaatagaaaataggaattcagttcacttgggatcatgccaagattctttagaaaaaaaaagaagaaatttatcctaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="57232" stop="110794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57532" g_stop="58094" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58095" i_stop="58311" i_length="217">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58312" g_stop="58336" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="583" r_length="24" r_score="0.680"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E559551" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57532" e_stop="58094"/>
          <exon e_start="58312" e_stop="58336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAATGCCATTCCTAACCATTACAATCCACATGTTACCGGGCATGTAGAACCAGGATTACAACAGGCTACGTGGAGAGGAAACACCAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGTCCTGATGATAGCCCTGTTAGGCGTCAGGAACAGGTTGCAAGATGGAATTACACACAACCTCAGATGAATATGAGAGACAGCTACATACCTAATTGGTCTGCATCGCGTAATCCTGGGCATTATTCTGGCTATCGTGGTCCTGACGATGGTGGTAATAGGAGGTGGGGTGACAGGAGAAGATAACCTTCAAACGGCTGGCCATTTGATTCTTTTGACGTGAGATATTCTTTAGTGTTTACATTAGAGTAGAAAGTTCTCAATAGGGTGTTGCATTTTTGCAACGTGAAATGGTTGTAAACTTATAATGTCAGCATGTCACATCACTTCATTTTGTTTCCCAATTGATACCTGTCAGCAGAAAAATAGAAAATAGAAATTCAGTTCACTTGGGATCATGCCAAGAATCTTAAGAGAAAAAAAAGAAGAAATTTATCCTAGTCAAGGGATTGCTGTGTCTTGATTGTGTCCCTCTTGAAAGTTGAAACATTGGGGATAAATTATTTCGAGATTATTTATTTTAGAACAAGTTATTTTATCATAATTCATATATGTGATAACCTAAAATATAAGTAGTGCGATAAATATTTTCAGGTTTACCTAATACAAATGCAGGATATTTATAGAATTATTATATGTTATTTCATAAAATCAAAGAATTACAAAAAAAAAATAACATTAT</genome_strand>
        <mrna_strand>CAAGAAAATGCCATTCCTAATCATTACAATCCACATGTTGCCGGACATGTAGAACCAGGATTACAACAGGCTGCATGGAGAGGAAACAGCAACTATTCCGAGGGAGCTGGGTTTGAATCTTGGAGTCCTGATAATAGTCCTGTTAGGCGTCAGGAACAGGTTGCAAGATGGAATTACACACAACCTCAGATGAATATGAGAGACAACTACAGACCTGATTGGTCTGCATCGCGTAATCCTGGGCATTATTCTGGTTATCGTGGTCCTGACGATGGTGGTAATAGGAGGTGGGGTGACAGGAGAAGATAACCTTCAAACGGCTGGCCATTTGATTCTTTTGAC--GAGTGATTCATTAGTGTTTACATTAGAGTAGAACGTTCTC-AGAGGGGGTTGCATTTTTGCAACGTGAAATGGTTGTAAACTTGTAATGTCAGCATGTCACATCACTTTATTTTGTTTCCCAATTGGTACCTGTCAACAGAAAAATAGAAAATAGGAATTCAGTTCACTTGGGATCATGCCAAGATTCTTTAGA-AAAAAAAAGAAGAAATTTATCCTA.........................................................................................................................................................................................................................AA-AAAAAAAAAAAAAAAACTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E705881" ref_strand="+" ref_description="SGN-E705881 [FA28BF05]">
      <seq>caagctagcagttttgtgcatcagcagatgccccttgcaccacaattgtcccaacagtctgcaccgcttcaggaagctgcagggtcttatggtgtgccccagcgcgccccgatggaccattcacaggaaattcatcaagctagcagtttggtgcatcagcagacgccccttgtgccacaattggcactgcctcaagcagctgcagggtcttatggtgtgcgccaacacggcccgttggtccattcacaggacattcatcaagctagcagttttgtgcatcagcagatgccccttgcaccacaattagcccaacagtctgcactgcttcaggaagctgcagggtcttatggaaatgatcatcgaccatctctgctaaatcctcgtataaaccagacggtccttgcaaatcctatgcattcacaatcatctgccgcctcagaaccagcagtaaatagaaataattactttttctctggatcgacggaatacaatcaacagagtgccactgcagcaagaatccaaggtgtaacatatggtaatattcgatcttcgcaaatgcctatagctaatgtacaacaaagaactattagcctacatgcacctcagatgtcactagaaaggccacaactacaaacacagaggcaacctggatatgcacctgaacatatatgggggactataccgggatctgctttaagtcgggttcatcaagaaaatgccattcctaatcgttacaatccacatgttgccgggcatgtagaaccaggattacaacaggctgcgtggagaggaaacaacaactatgccgagggagctgggtttgaatcttggaggcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="78416" stop="79855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78716" g_stop="79555" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E705881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78716" e_stop="79555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTAGCAGTTTTGTGCATCAGCAGATGCCCCTTGCACCACAATTGTCCCAACAGTCTGCACCGCTTCAGGAAGCTGCAGGGTCTTATGGTGTGCCCCAGCGCGCCCCGATGGACCATTCACAGGAAATTCATCAAGCTAGCAGTTTGGTGCATCAGCAGACGCCCCTTGTGCCACAATTGGCACTGCCTCAAGCAGCTGCAGGGTCTTATGGTGTGCGCCAACACGGCCCGTTGGTCCATTCACAGGACATTCATCAAGCTAGCAGTTTTGTGCATCGGCAGATGCCCCTTGCACCACAATTAGCCCAACAGTCTGCACTGCTTCAGGAAGCTGCAGGGTCTTATGGAAATGATCATCGACCATCTCTGCTAAATCCTCGTATAAACCAGACGGTCCTTGCAAATCTTATGCATTCACAATCATCTGCCGCCTCAGAACCAGCAGTAAATAGAAATAATTACTTTTTCTCTGGATCGACGGAATACAATCAACAGAGTGCCACTGCAGCAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGAT</genome_strand>
        <mrna_strand>CAAGCTAGCAGTTTTGTGCATCAGCAGATGCCCCTTGCACCACAATTGTCCCAACAGTCTGCACCGCTTCAGGAAGCTGCAGGGTCTTATGGTGTGCCCCAGCGCGCCCCGATGGACCATTCACAGGAAATTCATCAAGCTAGCAGTTTGGTGCATCAGCAGACGCCCCTTGTGCCACAATTGGCACTGCCTCAAGCAGCTGCAGGGTCTTATGGTGTGCGCCAACACGGCCCGTTGGTCCATTCACAGGACATTCATCAAGCTAGCAGTTTTGTGCATCAGCAGATGCCCCTTGCACCACAATTAGCCCAACAGTCTGCACTGCTTCAGGAAGCTGCAGGGTCTTATGGAAATGATCATCGACCATCTCTGCTAAATCCTCGTATAAACCAGACGGTCCTTGCAAATCCTATGCATTCACAATCATCTGCCGCCTCAGAACCAGCAGTAAATAGAAATAATTACTTTTTCTCTGGATCGACGGAATACAATCAACAGAGTGCCACTGCAGCAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E540033" ref_strand="-" ref_description="SGN-E540033 [TUS-60-B16]">
      <seq>gcaggcaagattccaaggtgtaacatatggtaatattcgatcttcgcaaatgcctatagctaatgtacaacaaagaactattagcctacatgcacttcagatgtcactagaaaggccacaactacaaacacagaggcaacctggatatgcacctgaacatatatgggggactataccgggatctgctttaagtcgggttcatcaagaaaatgccattcctaatcgttacaatccacatgttgccgggcatgtagaaccaggattacaacaggctgcgtggagaggaaacaacaactatgccgagggagctgggtttgaatcttggaggcctgataatagacctgtcaggcgtcaggaacaggtagcaagatggaactatgcagaacctcagatgaatatgagagactgctacagatctgattggtctgcatcgagtaatccttggcattattctggttatcgtggtcatgctgatggtgtgaatgagaggcagggtgacggacctgattggtctacatcgcgtaatcctgagcattattctggttatcgtggtcgtgctgatggtgtgaatgagaggcggggtgacaggaggaggagctaaccatcaaacgccaggccatttgattcttttgactagagagtcgttagtgttttcatcagagtagaacgttctaggagggggttgcattttgcacatgaaatggttgtaaacttgtattgtcagcttgtcacattactttattttgttcctgaattgatacctgtcaacatcaaattagatgattgggaacttgggatcatgccaagaatcttttagaaaaaaaaaaaagatttttatcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="78923" stop="80363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79223" g_stop="80070" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E540033" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79223" e_stop="80070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GCAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTGAGCATTATTCTGGTTATCGTGGTCGTGCTGATGGTGTGAATGAGAGGCGGGGTGACAGGAGGAGGAGCTAACCATCAAACGCCAGGCCATTTGATTCTTTTGACTAGAGAGTCGTTAGTGTTTTCATCAGAGTAGAACGTTCTAGGAGGGGGTTGCATTTTGCACATGAAATGGTTGTAAACTTGTATTGTCAGCTTGTCACATTACTTTATTTTGTTCCTGAATTGATACCTGTCAACATCAAATTAGATGATTGGGAACTTGGGATCATGCCAAGAATCTTTTAGAAAAAAAAAAAAGATTTTTATCCTAGTCAAGG</genome_strand>
        <mrna_strand>GCAGGCAAGATTCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACTTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTGAGCATTATTCTGGTTATCGTGGTCGTGCTGATGGTGTGAATGAGAGGCGGGGTGACAGGAGGAGGAGCTAACCATCAAACGCCAGGCCATTTGATTCTTTTGACTAGAGAGTCGTTAGTGTTTTCATCAGAGTAGAACGTTCTAGGAGGGGGTTGCATTTTGCACATGAAATGGTTGTAAACTTGTATTGTCAGCTTGTCACATTACTTTATTTTGTTCCTGAATTGATACCTGTCAACATCAAATTAGATGATTGGGAACTTGGGATCATGCCAAGAATCTTTTAGAAAAAAAAAAAAGATTTTTATCCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E540036" ref_strand="+" ref_description="SGN-E540036 [TUS-60-B16]">
      <seq>caagaatccaaggtgtaacatatggtaatattcgatcttcgcaaatgcctatagctaatgtacaacaaagaactattagcctacatgcacctcagatgtcactagaaaggccacaactacaaacacagaggcaacctggatatgcacctgaacatatatgggggactataccgggatctgctttaagtcgggttcatcaagaaaatgccattcctaatcgttacaatccacatgttgccgggcatgtagaaccaggattacaacaggctgcgtggagaggaaacaacaactatgccgagggagctgggtttgaatcttggaggcctgataatagacctgtcaggcgtcaggaacaggtagcaagatggaactatgcagaacctcagatgaatatgagagactgctacagatctgattggtctgcatcgagtaatccttggcattattctggttatcgtggtcatgctgatggtgtgaatgagaggcagggtgacggacctgattggtctacatcgcgtaatcctgagcattattctggttatcgtggtcgtgctgatggtgtgaatgagaggcggggtgacaggaggaggagctaaccatcaaacgccaggccatttgattcttttgactagagagtcgttagtgttttcatcagagtagaacgttctaggagggggttgcattttgcacatgaaatggttgtaaacttgtattgtcagcttgtcacattactttattttgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="78927" stop="80272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79227" g_stop="79972" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E540036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79227" e_stop="79972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTGAGCATTATTCTGGTTATCGTGGTCGTGCTGATGGTGTGAATGAGAGGCGGGGTGACAGGAGGAGGAGCTAACCATCAAACGCCAGGCCATTTGATTCTTTTGACTAGAGAGTCGTTAGTGTTTTCATCAGAGTAGAACGTTCTAGGAGGGGGTTGCATTTTGCACATGAAATGGTTGTAAACTTGTATTGTCAGCTTGTCACATTACTTTATTTTGTTCCT</genome_strand>
        <mrna_strand>CAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTGAGCATTATTCTGGTTATCGTGGTCGTGCTGATGGTGTGAATGAGAGGCGGGGTGACAGGAGGAGGAGCTAACCATCAAACGCCAGGCCATTTGATTCTTTTGACTAGAGAGTCGTTAGTGTTTTCATCAGAGTAGAACGTTCTAGGAGGGGGTTGCATTTTGCACATGAAATGGTTGTAAACTTGTATTGTCAGCTTGTCACATTACTTTATTTTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E548320" ref_strand="+" ref_description="SGN-E548320 [TUS-60-B20]">
      <seq>cccccgggctgcaggcaagaatccaaggtgtaacatatggtaatattcgatcttcgcaaatgcctatagctaatgtacaacaaagaactattagcctacatgcacctcagatgtcactagaaaggccacaactacaaacacagaggcaacctggatatgcacctgaacatatatgggggactataccgggatctgctttaagtcgggttcatcaagaaaatgccattcctaatcgttacaatccacatgttgccgggcatgtagaaccaggattacaacaggctgcgtggagaggaaacaacaactatgccgagggagctgggtttgaatcttggaggcctgataatagacctgtcaggcgtcaggaacaggtagcaagatggaactatgcagaacctcagatgaatatgagagactgctacagatctgattggtctgcatcgagtaatccttggcattattctggttatcgtggtcatgctgatggtgtgaatgagaggcagggtgacggacctgattggtctacatcgcgtaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="78921" stop="80051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79227" g_stop="79751" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="540" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E548320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79227" e_stop="79751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTG</genome_strand>
        <mrna_strand>CAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E287455" ref_strand="+" ref_description="SGN-E287455 [cLES-9-E15]">
      <seq>aagaatccaaggtgtaacatatggtaatattcgatcttcgcaaatgcctatagctaatgtacaacaaagaactattagcctacatgcacctcagatgtcactagaaaggccacaactacaaacacagaggcaacctggatatgcacctgaacatatatgggggactataccgggatctgctttaagtcgggttcatcaagaaaatgccattcctaatcgttacaatccacatgttgccgggcatgtagaaccaggattacaacaggctgcgtggagaggaaacaacaactatgccgagggagctgggtttgaatcttggaggcctgataatagacctgtcaggcgtcaggaacaggtagcaagatggaactatgcagaacctcagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="78928" stop="79921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79228" g_stop="79621" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E287455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79228" e_stop="79621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATG</genome_strand>
        <mrna_strand>AAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E540040" ref_strand="+" ref_description="SGN-E540040 [TUS-60-B20]">
      <seq>aaaatcttttttttttttctaaaagattcttggcatgatcccaagttcccaatcatctaatttgatgttgacaggtatcaattcaggaacaaaataaagtaatgtgacaagctgacaatacaagtttacaaccatttcatgtgcaaaatgcaaccccctcctagaacgttctactctgatgaaaacactaacgactctctagtcaaaagaatcaaatggcctggcgtttgatggttagctcctcctcctgtcaccccgcctctcattcacaccatcagcacgaccacgataaccagaataatgctcaggattacgcgatgtagaccaatcaggtccgtcaccctgcctctcattcacaccatcagcatgaccacgataaccagaataatgccaaggattactcgatgcagaccaatcagatctgtagcagtctctcatattcatctgaggttctgcatagttccatcttgctacctgttcctgacgcctgacaggtctattatcaggcctccaagattcaaacccagctccctcggcatagttgttgtttcctctccacgcagcctgttgtaatcctggttctacatgcccggcaacatgtggattgtaacgattaggaatggcattttcttgatgaacccgacttaaagcagatcccggtatagtcccccatatatgttcaggtgcatatccaggttgcctctgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="80356" stop="79046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80056" g_stop="79346" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E540040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80056" e_stop="79346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTTTTTTTTTTTCTAAAAGATTCTTGGCATGATCCCAAGTTCCCAATCATCTAATTTGATGTTGACAGGTATCAATTCAGGAACAAAATAAAGTAATGTGACAAGCTGACAATACAAGTTTACAACCATTTCATGTGCAAAATGCAACCCCCTCCTAGAACGTTCTACTCTGATGAAAACACTAACGACTCTCTAGTCAAAAGAATCAAATGGCCTGGCGTTTGATGGTTAGCTCCTCCTCCTGTCACCCCGCCTCTCATTCACACCATCAGCACGACCACGATAACCAGAATAATGCTCAGGATTACGCGATGTAGACCAATCAGGTCCGTCACCCTGCCTCTCATTCACACCATCAGCATGACCACGATAACCAGAATAATGCCAAGGATTACTCGATGCAGACCAATCAGATCTGTAGCAGTCTCTCATATTCATCTGAGGTTCTGCATAGTTCCATCTTGCTACCTGTTCCTGACGCCTGACAGGTCTATTATCAGGCCTCCAAGATTCAAACCCAGCTCCCTCGGCATAGTTGTTGTTTCCTCTCCACGCAGCCTGTTGTAATCCTGGTTCTACATGCCCGGCAACATGTGGATTGTAACGATTAGGAATGGCATTTTCTTGATGAACCCGACTTAAAGCAGATCCCGGTATAGTCCCCCATATATGTTCAGGTGCATATCCAGGTTGCCTCTGTGTTTG</genome_strand>
        <mrna_strand>AAAATCTTTTTTTTTTTTCTAAAAGATTCTTGGCATGATCCCAAGTTCCCAATCATCTAATTTGATGTTGACAGGTATCAATTCAGGAACAAAATAAAGTAATGTGACAAGCTGACAATACAAGTTTACAACCATTTCATGTGCAAAATGCAACCCCCTCCTAGAACGTTCTACTCTGATGAAAACACTAACGACTCTCTAGTCAAAAGAATCAAATGGCCTGGCGTTTGATGGTTAGCTCCTCCTCCTGTCACCCCGCCTCTCATTCACACCATCAGCACGACCACGATAACCAGAATAATGCTCAGGATTACGCGATGTAGACCAATCAGGTCCGTCACCCTGCCTCTCATTCACACCATCAGCATGACCACGATAACCAGAATAATGCCAAGGATTACTCGATGCAGACCAATCAGATCTGTAGCAGTCTCTCATATTCATCTGAGGTTCTGCATAGTTCCATCTTGCTACCTGTTCCTGACGCCTGACAGGTCTATTATCAGGCCTCCAAGATTCAAACCCAGCTCCCTCGGCATAGTTGTTGTTTCCTCTCCACGCAGCCTGTTGTAATCCTGGTTCTACATGCCCGGCAACATGTGGATTGTAACGATTAGGAATGGCATTTTCTTGATGAACCCGACTTAAAGCAGATCCCGGTATAGTCCCCCATATATGTTCAGGTGCATATCCAGGTTGCCTCTGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E346333" ref_strand="+" ref_description="SGN-E346333 [cTOF-23-N4]">
      <seq>ggcgaagtacctgattctctcttgcacatgctaacgactaattttcagcggcgaaaatcggtactgaaccaattacaactcctcgccggcgtttcacatcatttcttcatcggaaaacttcaacagtagtcggagggactctccaatttgatctctaacatggtagctagattcatcacaagcaatctcaatcgaatacgaaaaacctactcagtatcaacaacttttagtaggcacaactacgatttcacttctctatattcttctccgtatttgcaattggatgatgacgattcagctagacatgtagtgaatccgagtttcatgctgcagaagagatggcatacgggcgattcacattctcatcatcatgatcatcacgatctccgctccggtaaaggcggcgagaggatttttcggcttggacttgctgctgacattggcctcgccgctagtaaagcttttgcaggttatgtatgtggaagcaccgccattattgctgatgcggctcattctatatctgatgtggttttgagtggtgtatcattgctgtcctttcaagctgcaagggttcccaaggacaaagaacatccttatggacatggtaaatttgagactcttggagctcttggaatttctggtgtgctattggctactgctggtggcataggatggcatgctttagatgttttgctgggatnngtggtctgcagcgcctngaagtttttatcagtcaatgactcatcagcatgtgcatgagcaacatcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="81120" stop="84140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81420" g_stop="81947" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81948" i_stop="82690" i_length="743">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82691" g_stop="82760" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="598" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82761" i_stop="83596" i_length="836">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83597" g_stop="83694" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="696" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83695" i_stop="83766" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83767" g_stop="83840" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="771" r_length="75" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E346333" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81420" e_stop="81947"/>
          <exon e_start="82691" e_stop="82760"/>
          <exon e_start="83597" e_stop="83694"/>
          <exon e_start="83767" e_stop="83840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAAGTACCTGATTCTCTCTTGCACATGCTAACGACTAATTTTCAGCGGCGAAAATCGGTACTGAACCAATTACAACTCCTCGCCGGCGTTTCACATCATTTCTTCATCGGAAAACTTCAACAGTAGTCGGAGGGACTCTCCAATTTGATCTCTAACATGGTAGCTAGATTCATCACAAGCAATCTCAATCGAATACGAAAAACCTACTCAGTATCAACAACTTTTAGTAGGCACAACTACGATTTCACTTCTCTATATTCTTCTCCGTATTTGCAATTGGATGATGACGATTCAGCTAGACATGTAGTGAATCCGAGTTTCATGCTGCAGAAGAGATGGCATACGGGCGATTCACATTCTCATCATCATGATCATCACGATCTCCGCTCCGGTAAAGGCGGCGAGAGGATTTTTCGGCTTGGACTTGCTGCTGACATTGGCCTCGCCGCTAGTAAAGCTTTTGCAGGTTATGTATGTGGAAGCACCGCCATTATTGCTGATGCGGCTCATTCTATATCTGATGTGGTATGTGTCATGTGTGATGTATCTAGTCATGTACATTGTTTAGCTAAATTTATTCCATAAAATGACTCTCAGTTTGTTCTTCTTGTATCTGTTGACCATTTGACAATAGAGATTGTGAGTTTCCAGAAATGGAAGAACATAAAATCTGGTGTTACTTGCTATTAAACAAGCTGAACATAAGTTTGATAGAACAAGCTAAACGAGCAAAAACGCTATTGATGAAAGCAAACTGCATAATTCATTATAAATTGCAGACTTATTTAAAGAGTTCACAATCTCAACAGAAATAAAAAGAGAACTCCTAAGAATTAGAGATAAAACTGCTACACAGATTACAGCGAACTTAGACTGTTGCAGTTTTTATGCATTTTTGGAACACTCCTTGCTTTAAGAGCTGCGAACTCCAAGTTTTTGCCCAAGAAATTGAAATTTATTGCTTGGTAAAGGCTTGGTGAAGATATCAGCTTAGATGCTCCTCAATCACATCACCTTTTATTTTGCATTTCTCTCAGGAAAAAATGCTTGATATTTAAGTGTTAAGTTTTGCCATGAAATACAGGATTGTGAGAAATTGCTAACACAAATTGGTTGTCCACAAATACTTCAGTTCGTTTTGTTTGATTCATATGCATATCAACAATATTCTCCTCAACCACAACACTTGATTCATTGTTGTTATTGCAGTCACAAATTCTGCCTAGCCACAGTGAACTACTTCTAATACTTTGTTATGGCCTTTGCAGGTTTTGAGTGGTGTATCATTGCTGTCCTTTCAAGCTGCAAGGGTTCCCAAGGACAAAGAACATCCTTATGGTCACTCTTGATTTGTATTTACACTTTTAACTCTTTTGATCTTACATCACTTTGTCTACATGTCTTTACCTTTTGATTTTGTGCTTGTGCTTACTTGTGTAATAGGTGGACGTAATAGCTACCAACCTAATTAGATTTAGTTAACTGAGGATTGTTGATTTGATAAAATTAACCAATATATAATATTGTAAAAGAGCTGACATGATATGGAACTTATATCATATCTTCTATATTTATTAATGAATATGAATCTTATCACTGTCGGCTCCTTGAACTTTACAACCTAGTGGAAGTTAGTCAGCCCTAGAGACATATACTCCTCCCATTTATATTTTGTTTGACACAGTTGATTGGGGGAATGGAGTTTGAAATGTTGACTTGTATATTATATTAGTTGTAGTAGAAAAAAACATCAAAGTTATGGTTCATAAGTTAGTTGGATAGATAAATCATTATACGAAAGTTTATATCAATAGGTAATAAATTTGAATATTTTAAAGTTGTATAATATAATATACTTGTTAGTAAAATAGAGTCCAACACTTTGAACACTCCCACACCCCCAAAATAGAAAGAAGACATAGTGGATCTTGCTTGAGATAAAGACAGTCCAATGTAACATTTCTGCAGATATACTGTCAGATGCCTCTTCTCCTCTACCCTGTTGATTCTCTGTTTTCCTTACTCCTTCACCTGTGTGTCTTCCAAATATATTGCCAGTGCTGTCCTATCGTAGCTTTGGTACCAATATCTAGATTACTTTTTAAATTTCACTATGTTGTCTGATCAAATCATGCTTCTGGTTTTGCATCTGATTTTACTTTTTACATGAACAGGACATGGTAAATTTGAGACTCTTGGAGCTCTTGGAATTTCTGGTGTGCTATTGGCTACTGCTGGTGGCATAGGATGGCATGCTTTAGATGTTTTGCTGGTATGTATATATCGCTGGTATTCATTATATCTAGGAGTCTATGTTCCCTATTGTTTGAAACATTTCTTGTAGGGAT-TGTGGTCTGCAGCGCCT-GAAGTTTTTAATCAGTCAATGACTCATCAGCATGTGCATGAGCAACATCACCA</genome_strand>
        <mrna_strand>GGCGAAGTACCTGATTCTCTCTTGCACATGCTAACGACTAATTTTCAGCGGCGAAAATCGGTACTGAACCAATTACAACTCCTCGCCGGCGTTTCACATCATTTCTTCATCGGAAAACTTCAACAGTAGTCGGAGGGACTCTCCAATTTGATCTCTAACATGGTAGCTAGATTCATCACAAGCAATCTCAATCGAATACGAAAAACCTACTCAGTATCAACAACTTTTAGTAGGCACAACTACGATTTCACTTCTCTATATTCTTCTCCGTATTTGCAATTGGATGATGACGATTCAGCTAGACATGTAGTGAATCCGAGTTTCATGCTGCAGAAGAGATGGCATACGGGCGATTCACATTCTCATCATCATGATCATCACGATCTCCGCTCCGGTAAAGGCGGCGAGAGGATTTTTCGGCTTGGACTTGCTGCTGACATTGGCCTCGCCGCTAGTAAAGCTTTTGCAGGTTATGTATGTGGAAGCACCGCCATTATTGCTGATGCGGCTCATTCTATATCTGATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGTGGTGTATCATTGCTGTCCTTTCAAGCTGCAAGGGTTCCCAAGGACAAAGAACATCCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGTAAATTTGAGACTCTTGGAGCTCTTGGAATTTCTGGTGTGCTATTGGCTACTGCTGGTGGCATAGGATGGCATGCTTTAGATGTTTTGCTG........................................................................GGATNNGTGGTCTGCAGCGCCTNGAAGTTTTT-ATCAGTCAATGACTCATCAGCATGTGCATGAGCAACATCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E726048" ref_strand="+" ref_description="SGN-E726048 [LA10AF01]">
      <seq>attctctcttgcacatgctaacgactaattttcagcggcgaaaatcggtactgaaccaattacaactcctcgccggcgtttcacatcatttcttcatcggaaaacttcaacagtagtcggagggactctccaatttgatctctaacatggtagctagattcatcacaagcaatctcaatcgaatacgaaaaacctactcagtatcaacaacttttagtaggcacaactacgatttcacttctctatattcttctccgtatttgcaattggatgatgacgattcagctagacatgtagtgaatccgagttttatgctgcagaagagatggcatacgggcgattcacattctcatcatcatgatcatcacgatctccgctccggtaaaggcggcgagaggatttttcggcttggacttgctgctgacattggcctcgccgctagtaaagcttttgcaggttatgtatgtggaagcaccgccattattgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="81133" stop="82223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81433" g_stop="81923" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E726048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81433" e_stop="81923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTTGCACATGCTAACGACTAATTTTCAGCGGCGAAAATCGGTACTGAACCAATTACAACTCCTCGCCGGCGTTTCACATCATTTCTTCATCGGAAAACTTCAACAGTAGTCGGAGGGACTCTCCAATTTGATCTCTAACATGGTAGCTAGATTCATCACAAGCAATCTCAATCGAATACGAAAAACCTACTCAGTATCAACAACTTTTAGTAGGCACAACTACGATTTCACTTCTCTATATTCTTCTCCGTATTTGCAATTGGATGATGACGATTCAGCTAGACATGTAGTGAATCCGAGTTTCATGCTGCAGAAGAGATGGCATACGGGCGATTCACATTCTCATCATCATGATCATCACGATCTCCGCTCCGGTAAAGGCGGCGAGAGGATTTTTCGGCTTGGACTTGCTGCTGACATTGGCCTCGCCGCTAGTAAAGCTTTTGCAGGTTATGTATGTGGAAGCACCGCCATTATTGCTGAT</genome_strand>
        <mrna_strand>ATTCTCTCTTGCACATGCTAACGACTAATTTTCAGCGGCGAAAATCGGTACTGAACCAATTACAACTCCTCGCCGGCGTTTCACATCATTTCTTCATCGGAAAACTTCAACAGTAGTCGGAGGGACTCTCCAATTTGATCTCTAACATGGTAGCTAGATTCATCACAAGCAATCTCAATCGAATACGAAAAACCTACTCAGTATCAACAACTTTTAGTAGGCACAACTACGATTTCACTTCTCTATATTCTTCTCCGTATTTGCAATTGGATGATGACGATTCAGCTAGACATGTAGTGAATCCGAGTTTTATGCTGCAGAAGAGATGGCATACGGGCGATTCACATTCTCATCATCATGATCATCACGATCTCCGCTCCGGTAAAGGCGGCGAGAGGATTTTTCGGCTTGGACTTGCTGCTGACATTGGCCTCGCCGCTAGTAAAGCTTTTGCAGGTTATGTATGTGGAAGCACCGCCATTATTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E341838" ref_strand="+" ref_description="SGN-E341838 [cTOF-9-H17]">
      <seq>gttttataaatttttcattaaaataaaggaatacaatgtggtagtacatttattttgaccttttaaaatgatgttgaggtgggtcacataaattagatacctgccaaagcatgacaattagtttctaataaaaatttatgaatcatgtacaaatggttatatttaattttttgaagaaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="91940" stop="92723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92240" g_stop="92423" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E341838" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92240" e_stop="92423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATAAATTTTTCATTAAAATAAAGGAATACAATGTGGTAGTACATTTATTTTGACCTTTTAAAATGATGTTGAGGTGGGTCACATAAATTAGATA-CTGCCAAAGCATGACAATTAGTTTCTAATAAAAATTTATGAATCATGTACAAATGGTTATATTTAATTTTTTGAAGAAAATATTT</genome_strand>
        <mrna_strand>GTTTTATAAATTTTTCATTAAAATAAAGGAATACAATGTGGTAGTACATTTATTTTGACCTTTTAAAATGATGTTGAGGTGGGTCACATAAATTAGATACCTGCCAAAGCATGACAATTAGTTTCTAATAAAAATTTATGAATCATGTACAAATGGTTATATTTAATTTTTTGAAGAAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E357615" ref_strand="+" ref_description="SGN-E357615 [cTOS-24-E7]">
      <seq>ctaaaagcactccctcaagaacttctccccattccattcaagtccatgaccaataatatggctccaggtggcatgttctcaattacttcaggtaacctatttggtaatagtccaagaagtgtagcttcatcatcttccggacttcaacttagctcaaatatcccatcaaatttcaattatctacaagataacggtaaaaatagggtggctcaaggacaaggccaattgtcatcagttccaatgtcagctacagcgcttttgcaaaaagcggctcaaatgggggccacagctagtagtagcataaattccccaatgatgcaaaagagttttgtaacaagtgctatggctggtcctgatattagcataacaagaccatcacctaattatgacaatttccaaatgcaacaagacagtaacaatcatcagagtcagagtcagaatcagaatttagcagcagtgataaatgacatgggaatttatagcgggatactaatgagcaatgatcaaaacaacgatgggggatacataaaaaatgttacagaagtacttgatcgcgataatcataatcatagtacaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="113365" stop="114631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113665" g_stop="113755" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113756" i_stop="113840" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113841" g_stop="114331" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="582" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E357615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113665" e_stop="113755"/>
          <exon e_start="113841" e_stop="114331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAGCACTCCCTCAAGAACTTCTCCCCATTCCATTCAAGTCCATGACCAATAATATGGCTCCAGGTGGCATGTTCTCAATTACTTCAGGTAATTGAACTATCTGACTGTCTCGTTCAAAATCTTAACTAGTCAGAATGTTACATTTATTTAATTAGTTATATTTTCAACACAGGTAACCTATTTGGTAATAGTCCAAGAAGTGTAGCTTCATCATCTTCCGGACTTCAACTTAGCTCAAATATCCCATCAAATTTCAATTATCTACAAGATAACGGTAAAAATAGGGTGGCTCAAGGACAAGGCCAATTGTCATCAGTTCCAATGTCAGCTACAGCGCTTTTGCAAAAAGCGGCTCAAATGGGGGCCACAGCTAGTAGTAGCATAAATTCCCCAATGATGCAAAAGAGTTTTGTAACAAGTGCTATGGCTGGTCCTGATATTAGCATAACAAGACCATCACCTAATTATGACAATTTCCAAATGCAACAAGACAGTAACAATCATCAGAGTCAGAGTCAGAATCAGAATTTAGCAGCAGTGATAAATGACATGGGAATTTATAGCGGGATACTAATGAGCAATGATCAAAACAACGATGGGGGATACATAAAAAATGTTACAGAAGTACTTGATCGCGATAATCATAATCATAGTACAAATGAT</genome_strand>
        <mrna_strand>CTAAAAGCACTCCCTCAAGAACTTCTCCCCATTCCATTCAAGTCCATGACCAATAATATGGCTCCAGGTGGCATGTTCTCAATTACTTCAG.....................................................................................GTAACCTATTTGGTAATAGTCCAAGAAGTGTAGCTTCATCATCTTCCGGACTTCAACTTAGCTCAAATATCCCATCAAATTTCAATTATCTACAAGATAACGGTAAAAATAGGGTGGCTCAAGGACAAGGCCAATTGTCATCAGTTCCAATGTCAGCTACAGCGCTTTTGCAAAAAGCGGCTCAAATGGGGGCCACAGCTAGTAGTAGCATAAATTCCCCAATGATGCAAAAGAGTTTTGTAACAAGTGCTATGGCTGGTCCTGATATTAGCATAACAAGACCATCACCTAATTATGACAATTTCCAAATGCAACAAGACAGTAACAATCATCAGAGTCAGAGTCAGAATCAGAATTTAGCAGCAGTGATAAATGACATGGGAATTTATAGCGGGATACTAATGAGCAATGATCAAAACAACGATGGGGGATACATAAAAAATGTTACAGAAGTACTTGATCGCGATAATCATAATCATAGTACAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E546563" ref_strand="-" ref_description="SGN-E546563 [TUS-69-P22]">
      <seq>aactcaaatgttactttaactgtaaatgttatttgtagttttgatgatttgacaaacaatgggacctcataaaggtatcaggttctctaattgtgtattgcaggtgtcttgtttgaggtattgcagaagaaacaaaaccagggacctagtagaggtaccaggctctcatgaaaatgagtcagtcgactgccagctggagatggtacagaaagtaggtgcacacttcccgatggcgtcagaaaagtgtgaccttttcagcaaatggcaaaggagtttaggaaagtgacttgcccacataaaaggcactttccaaaacatttgttttttagtttttgcaacttgataaaaacttttcaagaacacttgcaaaggctacacaaaaggtagaatcattccaagaacaacagcaacatcttgagcttgtcgtatagttgtttaggaatttattctcttgttgttaaattgtaaaccactgctaaatctataaaggaattggtgtgttgtgtaaaagtctaggttgtccaagtgggatagcttagtgggtagattgtttttctacttaggcttgttgagcaatagaggactattgtttaacggtaagattgataactctttcttacgtttggtgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="156517" stop="19013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156201" g_stop="155609" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="627" r_length="589" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155608" i_stop="154438" i_length="1171">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="154437" g_stop="154403" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="662" r_length="35" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E546563" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="156201" e_stop="155609"/>
          <exon e_start="154437" e_stop="154403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATAATTTGACAAACTTAGGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTCTTGTTTGAAGTATTGCAGATGAAACAAACTCAGGGACCTAGTAGAGGTACCAGGCCCTCATGATGATGAGCCAGTCAACTGCCAATTGGAGA-CGTACAGAAAGTAGGTGCACACTTCTCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTCTTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAATCCTGTGAGATAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACGTAAAATCATTGTGTTAATTTTACTGCATTTAACTTTCTGGTAATTTTCTGAAGTAAAGTAAGAGACCTGGTCCATTACTAATAAGTGAAGGCATAAATTCTATCAAGTGGTATCAGAGCAGGCACTACCTATTTGGTTAACACCAAGGAAGTGATTTTGTTCTAAGAATAGCAGCTCCACTTAACCTCGAAGAAGGTCAGTCATCACACAGACCTCCTCGTTTCAATGGACATTTCTACAGTTGGTGGAAAGTTAGAATGCACGACTATCTCATGGCTGAAGATAGCGAGTTATGGGATATTATACTAGATGGACCCTTTGTTCCAATGATGGAAGTAAAGGATGGAGAAAAGACCATTACTGTTCCAAAGCCCAGGCAGAAATATGATGATGCTGACAGGAAAAAGATTGAAAAGGGTTTCAAAGCTAAAACTCTTCTGGTCTGTGGGATAGGACCTGATGAGTACAACAGAGTGTCAGCCTGTGAGTCTGCTAAAGAAATTTGGGATTGCTTGTTGACTGCACATGAAGGAACTGAACAAGTCAAAGAATCCAAGATTGACATGCTCACCTCACGATATGAGAACTTCAAAATGAAGGAAGGAGAAACTATACATGACATGTTCACCAAGTTGTCTTCCATTACAAAAGAGCTACGAAGTTTGGGTGAACCTATAAGCATGACCAAACAAGTCAGGAAAGTGCTTTGAATTCTTCCAAAGTCCTGGGAGAGCAAAGTTGATGCCATTACAGAAGCCAAGGACTTGAAGGTGCTGACCATGGATGCCTTGATTGGTAATCTTAAAACACATGAGATGAATCGAAACTATGATTTGTCAAAAAAGGAAGCCAAGAAGGACAAGTCATTGATGTTGAAGTATAAATCAGATGAAGATTCAAGTGATGATGATGATATGGCTTATCTCATCAGTAGATTTCAAAAGATTGTGAGAAAAAACAAAATGTATAAAAGAGGAACAAATGGGACTCGCAATGCTGCTCAAGGGGATACTTGCTACAAGTGTGGAAAGTCTGGGCACTTCATCAGAGAGTGTCCTTTACTCAAGAATGAAAACAAGGAACATCAAAAACACAGGGGTGACAA</genome_strand>
        <mrna_strand>TTTTGATGATTTGACAAACAATGGGACCTCATAAAGGTATCAGGTTCTCTAATTGTGTATTGCAGGTGTCTTGTTTGAGGTATTGCAGAAGAAACAAAACCAGGGACCTAGTAGAGGTACCAGGCTCTCATGAAAATGAGTCAGTCGACTGCCAGCTGGAGATGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTTCAGCAAATGGCAAAGGAGTTTAGGAAAGTGACTTGCCCACATAAAAGGCACTTTCCAAAACATTTGTTTTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACACTTGCAAAGGCTACAC--A--AAAGGTAGAATCATTCCAAGAACAACAGCAACATCTTGAGCTTGTCGTATAGTTGTTTAGGAATTTATTCTCTTGTTGTTAAATTGTAAACCACTGCTAAATCTATAAAGGAATTGGTGTGTTGTG-TAAAAGTCTAGGTTGTCCAAGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGTTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3]">
      <seq>ttttttttttttttttttttcaatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="19364" stop="156338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155094" g_stop="155109" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155110" i_stop="155558" i_length="449">
            <donor d_prob="0.030" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155559" g_stop="156047" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="501" r_length="485" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155094" e_stop="155109"/>
          <exon e_start="155559" e_stop="156047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCTTTTTCCTGTCAGCATCATCATATTTCTGCCTGGGCTTTGGAACAGTAATGGTCTTTTCTCCATCCTTTACTTCCATCATTGGAACAAAGGGTCCATCTAGTATAATATCCCATAACTCGCTATCTTCAGCCATGAGATAGTCGTGCATTCTAACTTTCCACCAACTGTAGAAATGTCCATTGAAACGAGGAGGTCTGTGTGATGACTGACCTTCTTCGAGGTTAAGTGGAGCTGCTATTCTTAGAACAAAATCACTTCCTTGGTGTTAACCAAATAGGTAGTGCCTGCTCTGATACCACTTGATAGAATTTATGCCTTCACTTATTAGTAATGGACCAGGTCTCTTACTTTACTTCAGAAAATTACCAGAAAGTTAAATGCAGTAAAATTAACACAATGATTTTACGTGGAAACCTCCTTGCTTAAGGGAGTAAAACCACGACCTATCTCACAGGATTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGACCTCTATTGCTCAACAAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAAGACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAAGGTCACACTTTTCTGACGCCATCGAGAAGTGTGCACCTACTTTCTGTA-CGTCTCCAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTAGAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTG-AAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CAC-TTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="158337" stop="159321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158637" g_stop="159021" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158637" e_stop="159021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTATCTAATTGAGAGTGGGTTCTTGT-TTTTCTTTAGCTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAATCACTAATAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAATGACTCAAAGGGTGAGTCATGTTGTACTTCGGTTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12]">
      <seq>ttttttttttttcaaaccttctatagaggtgagttgtgacatatatccaacccataatgattttatcacatctggacccattctcttatagaatggtcgagcattcacgatactcattacaagtcacattctcttcaaagattggactaattattcatatgtactttataaatttgcattataagcacattgtcatgactttaaaattcatcatatttccatgacacacctcaacatcactttgaaagataaagtgtaccatcactttatcttcttatatcatgatagaggatttataaacttgtcaagttattgggttgacaacattcacaagtctaatgacttttcataccattttcataataaaaattgtcttcacattttgaaggactatttgaagaactcatattgttattccttttatcattaccacaatgatgactattataattctgtccttccacgcctttattcatatcattaattatttgtcatctttcagactaatcattcactgctaccacattcatatgattgaatggagcaagtcaacaggcggatttcagagttatcacatgttgctaccacattcttttcaaggaatggagcaaattcaatatgatgaattttcagacattttcatcaaaaatataatgattttcttagtcatcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="160199" stop="158957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159901" g_stop="159257" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159901" e_stop="159257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTTTCTCAAACCTTCTATAGAGGTGAGTTGTGACATATATCCAACCCATAATGATTTGCTCACATCTGGACCCATTCTCTTATAGAATGGTCGAGCATTCACGATACTCATCATAAGTCACATTCTCTTCAAGGAATGAACTAATTATTTATATGTACTTCATCAATTTGCATTATAAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCATTTTGAATGATCAAGTGTACCATCACTTTATTTTCTTGTATCATGATAGAGGATTTATAAACTTGTCAAATTATTGGGTTGACAACATTCACAAGTCTAATGACCTTTCGTACCATTTTGATAATGAAAACTGTCTTCACATTTCGAAGGACTATTTGGAGAACCCATAGTGTTCTTTCTTTTATAATTACCACAATGATGACTATTATAATTCCGTCCCTTCATGCCTTTTTTCATATCGTTAATCATTTGTCATCTTTCAGACTAACTATTTACTGCTACCACATTCATACGATAGAATGGAGCAAGTGAACATGC-AATTTTAAAATTATCGTATGTTGCTACCACATTCTTTTCAAGGAATGGAGCAAATTCAACAGGACGAATTTCAAGAC-TTTTCATCAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTCAAACCTTCTATAGAGGTGAGTTGTGACATATATCCAACCCATAATGATTTTATCACATCTGGACCCATTCTCTTATAGAATGGTCGAGCATTCACGATACTCATTACAAGTCACATTCTCTTCAAAGATTGGACTAATTATTCATATGTACTTTATAAATTTGCATTATAAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCACTTTGAAAGATAAAGTGTACCATCACTTTATCTTCTTATATCATGATAGAGGATTTATAAACTTGTCAAGTTATTGGGTTGACAACATTCACAAGTCTAATGACTTTTCATACCATTTTCATAATAAAAATTGTCTTCACATTTTGAAGGACTATTTGAAGAACTCATATTGTTATTCCTTTTATCATTACCACAATGATGACTATTATAATTCTGTCCTTCCACGCCTTTATTCATATCATTAATTATTTGTCATCTTTCAGACTAATCATTCACTGCTACCACATTCATATGATTGAATGGAGCAAGTCAACAGGCGGATTTCAGAGTTATCACATGTTGCTACCACATTCTTTTCAAGGAATGGAGCAAATTCAATATGATGAATTTTCAGACATTTTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="159230" stop="160210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159531" g_stop="159884" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="159531" e_stop="159884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTATCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAAATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="162323" stop="161048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162023" g_stop="161348" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162023" e_stop="161348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTT-TTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCTTCGACGGTTATTTGATATCGATTCCAACAGGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAAATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT-----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="-" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="162323" stop="161321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162023" g_stop="161621" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162023" e_stop="161621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTT-TTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT-----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161329" stop="162606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161629" g_stop="162306" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161629" e_stop="162306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161331" stop="162484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161630" g_stop="162184" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161630" e_stop="162184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161334" stop="162387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161634" g_stop="162087" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161634" e_stop="162087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161378" stop="162560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161678" g_stop="162260" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161678" e_stop="162260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161736" stop="162744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162036" g_stop="162444" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162036" e_stop="162444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5D9KWo/sgn_ests_tomato_potato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0104L22-Iu7nL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0104L22.2" temp_strand="+" temp_description="C09SLm0104L22.2  EF647615.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647615| upload_account_name:spain (1 - 166328)">
        <position start="161812" stop="162883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162112" g_stop="162592" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0104L22.2" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0104L22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162112" e_stop="162592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGAGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCATAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="556" PGL_stop="3176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="556" e_stop="787"/>
            <exon e_start="873" e_stop="945"/>
            <exon e_start="1040" e_stop="1061"/>
            <exon e_start="1145" e_stop="1223"/>
            <exon e_start="1321" e_stop="1353"/>
            <exon e_start="2130" e_stop="2278"/>
            <exon e_start="2429" e_stop="2585"/>
            <exon e_start="3134" e_stop="3176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.784" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.231" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.994"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="556" e_stop="787" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="788" i_stop="872" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="873" e_stop="945" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.000">
            <gDNA_intron_boundary i_start="946" i_stop="1039" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1040" e_stop="1061" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.231" acc_prob="0.880">
            <gDNA_intron_boundary i_start="1062" i_stop="1144" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1145" e_stop="1223" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1224" i_stop="1320" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1321" e_stop="1353" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.930">
            <gDNA_intron_boundary i_start="1354" i_stop="2129" i_length="776"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2130" e_stop="2278" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.938">
            <gDNA_intron_boundary i_start="2279" i_stop="2428" i_length="150"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="2429" e_stop="2585" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="2586" i_stop="3133" i_length="548"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="3134" e_stop="3176" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="556" stop="787"/>
              <exon start="873" stop="945"/>
              <exon start="1040" stop="1061"/>
              <exon start="1145" stop="1223"/>
              <exon start="1321" stop="1353"/>
              <exon start="2130" stop="2278"/>
              <exon start="2429" stop="2585"/>
              <exon start="3134" stop="3176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTTGCTTCTGCAAATTCATCTTCTATGCTCAATAAACTCTTGATTTCTTCATCATCTTCCTCATTTCGGTACTTGTGTAAATCAACTAAGCCCTTTTTTCGTGTTCTTCCCATGGCGGAACAACAACAACAATCATCATCACTCAGTACTTCTTCCCATACCCATAAACACATCAATCGTCTCGCTTCTGAACATAGTCCTTACCTTCTTCAGCACGCTCATAATCCG : GTTGATTGGTATCCATGGGGTGAGGAAGCGTTTGCTGAAGCTCGTAAAAGAGATGTCCCAATCTTCTTATCAA : TTGGTTACAGTACATGTCATTG : GTGTCATGTTATGGAAGTTGAATCTTTTGAAGACGAAGAGGTAGCCAAATTGCTAAATGATTGGTTCGTTAGCATCAAG : GTTGATAGAGAGGAGCGTCCAGATGTTGATAAG : GTGTACATGACATATGTGCAAGCCTTATATGGTGGTGGTGGTTGGCCACTAAGTGCCTTCCTTTCACCTGATTTGAAGCCTTTGATGGGTGGGACTTACTTTCCACCAGAGGACAAATTTGGAAGGCCGGGATTTAAAACTATACTTAG : GAAAGTGAAGGAAGCGTGGAATAGCAAGAGAGATACGCTTATCCAGAGTGGGGCATTTGCAATAGAACAATTATCAGAAGCCTTGGCGGCAACTTCAACATCAAATAAGCTCTCAGATGAGGTTCCGCAAACCGCTCTGCGTAAATGTGCTGATCAT : CTGGCGGAAAGCTATGATTCAAAATATGGTGGTTTTGGTTCTG</gDNA_template>
            <first_frame> H  F  C  F  C  K  F  I  F  Y  A  Q  *  T  L  D  F  F  I  I  F  L  I  S  V  L  V  *  I  N  *  A  L  F  S  C  S  S  H  G  G  T  T  T  T  I  I  I  T  Q  Y  F  F  P  Y  P  *  T  H  Q  S  S  R  F  *  T  *  S  L  P  S  S  A  R  S  *  S   : G  *  L  V  S  M  G  *  G  S  V  C  *  S  S  *  K  R  C  P  N  L  L  I  N :   W  L  Q  Y  M  S  L  :  V  S  C  Y  G  S  *  I  F  *  R  R  R  G  S  Q  I  A  K  *  L  V  R  *  H  Q   : G  *  *  R  G  A  S  R  C  *  *   : G  V  H  D  I  C  A  S  L  I  W  W  W  W  L  A  T  K  C  L  P  F  T  *  F  E  A  F  D  G  W  D  L  L  S  T  R  G  Q  I  W  K  A  G  I  *  N  Y  T  *  :  E  S  E  G  S  V  E  *  Q  E  R  Y  A  Y  P  E  W  G  I  C  N  R  T  I  I  R  S  L  G  G  N  F  N  I  K  *  A  L  R  *  G  S  A  N  R  S  A  *  M  C  *  S   : S  G  G  K  L  *  F  K  I  W  W  F  W  F   </first_frame>
            <second_frame>  I  F  A  S  A  N  S  S  S  M  L  N  K  L  L  I  S  S  S  S  S  S  F  R  Y  L  C  K  S  T  K  P  F  F  R  V  L  P  M  A  E  Q  Q  Q  Q  S  S  S  L  S  T  S  S  H  T  H  K  H  I  N  R  L  A  S  E  H  S  P  Y  L  L  Q  H  A  H  N  P  :  V  D  W  Y  P  W  G  E  E  A  F  A  E  A  R  K  R  D  V  P  I  F  L  S   : I  G  Y  S  T  C  H  W :   C  H  V  M  E  V  E  S  F  E  D  E  E  V  A  K  L  L  N  D  W  F  V  S  I  K  :  V  D  R  E  E  R  P  D  V  D  K  :  V  Y  M  T  Y  V  Q  A  L  Y  G  G  G  G  W  P  L  S  A  F  L  S  P  D  L  K  P  L  M  G  G  T  Y  F  P  P  E  D  K  F  G  R  P  G  F  K  T  I  L  R :   K  V  K  E  A  W  N  S  K  R  D  T  L  I  Q  S  G  A  F  A  I  E  Q  L  S  E  A  L  A  A  T  S  T  S  N  K  L  S  D  E  V  P  Q  T  A  L  R  K  C  A  D  H  :  L  A  E  S  Y  D  S  K  Y  G  G  F  G  S  </second_frame>
            <third_frame>   F  L  L  L  Q  I  H  L  L  C  S  I  N  S  *  F  L  H  H  L  P  H  F  G  T  C  V  N  Q  L  S  P  F  F  V  F  F  P  W  R  N  N  N  N  N  H  H  H  S  V  L  L  P  I  P  I  N  T  S  I  V  S  L  L  N  I  V  L  T  F  F  S  T  L  I  I  R :   L  I  G  I  H  G  V  R  K  R  L  L  K  L  V  K  E  M  S  Q  S  S  Y  Q  :  L  V  T  V  H  V  I   : G  V  M  L  W  K  L  N  L  L  K  T  K  R  *  P  N  C  *  M  I  G  S  L  A  S  R :   L  I  E  R  S  V  Q  M  L  I  R :   C  T  *  H  M  C  K  P  Y  M  V  V  V  V  G  H  *  V  P  S  F  H  L  I  *  S  L  *  W  V  G  L  T  F  H  Q  R  T  N  L  E  G  R  D  L  K  L  Y  L   : G  K  *  R  K  R  G  I  A  R  E  I  R  L  S  R  V  G  H  L  Q  *  N  N  Y  Q  K  P  W  R  Q  L  Q  H  Q  I  S  S  Q  M  R  F  R  K  P  L  C  V  N  V  L  I  I :   W  R  K  A  M  I  Q  N  M  V  V  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="557" stop="787"/>
                    <exon start="873" stop="945"/>
                    <exon start="1040" stop="1061"/>
                    <exon start="1145" stop="1223"/>
                    <exon start="1321" stop="1353"/>
                    <exon start="2130" stop="2278"/>
                    <exon start="2429" stop="2585"/>
                    <exon start="3134" stop="3175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFASANSSSMLNKLLISSSSSSFRYLCKSTKPFFRVLPMAEQQQQSSSLSTSSHTHKHINRLASEHSPYLLQHAHNPVDWYPWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEEVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSAFLSPDLKPLMGGTYFPPEDKFGRPGFKTILRKVKEAWNSKRDTLIQSGAFAIEQLSEALAATSTSNKLSDEVPQTALRKCADHLAESYDSKYGGFGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5402" PGL_stop="6847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5402" e_stop="5626"/>
            <exon e_start="5693" e_stop="5896"/>
            <exon e_start="5972" e_stop="6148"/>
            <exon e_start="6239" e_stop="6453"/>
            <exon e_start="6535" e_stop="6847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.719" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="5402" e_stop="5626" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.719" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5627" i_stop="5692" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5693" e_stop="5896" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5897" i_stop="5971" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="5972" e_stop="6148" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="6149" i_stop="6238" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="6239" e_stop="6453" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6454" i_stop="6534" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.940">
            <gDNA_exon_boundary e_start="6535" e_stop="6847" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5402" stop="5626"/>
              <exon start="5693" stop="5896"/>
              <exon start="5972" stop="6109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5891" stop="5896"/>
              <exon start="5972" stop="6148"/>
              <exon start="6239" stop="6453"/>
              <exon start="6535" stop="6685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6550" stop="6847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAGGAGTACATGGATGTCGCTGAGAAAGCAACATATTTTATTAGGAAACACCTTTATAATGAACAGACGCGCAGGCTCCAGCATAGCTTCAGGAATGGTCCCTCCAAAGCGCCTGGATTTCTAGATGATTATGCATTTCTGATAGCAGGTCTACTGGATCTTTATGAATTCGGCGGTTCAGTCTTCTGGTTGGGTTGGGCACTAGAACTTCAGGAGAAACAG : GACGAGTTATTTCTCGACAAAACCGGAGGAGGTTACTTTAACACAACTGGTGAAGATCCTTCTGTTCTTCTACGTGTGAAAGAAGATCATGATGGGGCTGAGCCTTCAGGGAATTCCGTTTCTGTGATTAATCTAGTGAGATTGGCCTCTATGGTTGCTGGTGAAAAATCAAAACTTTACAGAGAGACCGGAGAACATGTCCTG : GCGGTTTTTGAGAAGAGGTTGAAAGAAGCAGCTGTTGCTGTGCCACTGATGTGCTGTGCAGCAGATATGCTGGCTATTCCGTCCAGAAAGCAAGTAGTTATAGTCGGAGTGAAGTCTTCTGAGGAGTTTGAAAGCATGGTTACCGCTGCTCATGCAGCATATGATCCTAACAAGACG : GTGATCCATATCGATCCCAAGGATGCAGAAGATGTGGCATTTTGGGAAGAAACTAATAGAAATATTGCTCTGATGGCGAAAAACAATGCTGCTGCGGACAAAGTGGTAGCCCTTGTTTGCCAAAACTTCACATGTAGCCCTCCAGTCAGTGACCCGAAAGCTCTAGAATCGTTGCTCTCGCAGTAGATAAACTTCTAAAAGCAGTTCAAGAGTGT : GTACATAAAGTGGTGAAAAGCTGGAGAGGCGGAGATCCGTCGTTGGTTATGCGTTGCAATAAGGCTCTGTATGGTAGTTCTGAGTTCTTGTGGATCCAACTGATCATTATACTGCAGATTATTAGTTCAAAGGAATGTAGATGAAAGCTAAGTTCACTTTTGAGTTTAATGAATGTTTACACTTGTATAGTTAGGCCAGTCCTGGTGTTAGAAAATATTTATGAGTTTCTTTTTTAACATTAACAGTTGGAATAAATGCAAAAGGTTGTATAAATTTAGTAGTTTCCTTTCATCTAAGGAGGTTGGTTTGCGG</gDNA_template>
            <first_frame> P  K  E  Y  M  D  V  A  E  K  A  T  Y  F  I  R  K  H  L  Y  N  E  Q  T  R  R  L  Q  H  S  F  R  N  G  P  S  K  A  P  G  F  L  D  D  Y  A  F  L  I  A  G  L  L  D  L  Y  E  F  G  G  S  V  F  W  L  G  W  A  L  E  L  Q  E  K  Q  :  D  E  L  F  L  D  K  T  G  G  G  Y  F  N  T  T  G  E  D  P  S  V  L  L  R  V  K  E  D  H  D  G  A  E  P  S  G  N  S  V  S  V  I  N  L  V  R  L  A  S  M  V  A  G  E  K  S  K  L  Y  R  E  T  G  E  H  V  L  :  A  V  F  E  K  R  L  K  E  A  A  V  A  V  P  L  M  C  C  A  A  D  M  L  A  I  P  S  R  K  Q  V  V  I  V  G  V  K  S  S  E  E  F  E  S  M  V  T  A  A  H  A  A  Y  D  P  N  K  T  :  V  I  H  I  D  P  K  D  A  E  D  V  A  F  W  E  E  T  N  R  N  I  A  L  M  A  K  N  N  A  A  A  D  K  V  V  A  L  V  C  Q  N  F  T  C  S  P  P  V  S  D  P  K  A  L  E  S  L  L  S  Q  *  I  N  F  *  K  Q  F  K  S  V :   Y  I  K  W  *  K  A  G  E  A  E  I  R  R  W  L  C  V  A  I  R  L  C  M  V  V  L  S  S  C  G  S  N  *  S  L  Y  C  R  L  L  V  Q  R  N  V  D  E  S  *  V  H  F  *  V  *  *  M  F  T  L  V  *  L  G  Q  S  W  C  *  K  I  F  M  S  F  F  F  N  I  N  S  W  N  K  C  K  R  L  Y  K  F  S  S  F  L  S  S  K  E  V  G  L  R </first_frame>
            <second_frame>  P  R  S  T  W  M  S  L  R  K  Q  H  I  L  L  G  N  T  F  I  M  N  R  R  A  G  S  S  I  A  S  G  M  V  P  P  K  R  L  D  F  *  M  I  M  H  F  *  *  Q  V  Y  W  I  F  M  N  S  A  V  Q  S  S  G  W  V  G  H  *  N  F  R  R  N  R :   T  S  Y  F  S  T  K  P  E  E  V  T  L  T  Q  L  V  K  I  L  L  F  F  Y  V  *  K  K  I  M  M  G  L  S  L  Q  G  I  P  F  L  *  L  I  *  *  D  W  P  L  W  L  L  V  K  N  Q  N  F  T  E  R  P  E  N  M  S  W :   R  F  L  R  R  G  *  K  K  Q  L  L  L  C  H  *  C  A  V  Q  Q  I  C  W  L  F  R  P  E  S  K  *  L  *  S  E  *  S  L  L  R  S  L  K  A  W  L  P  L  L  M  Q  H  M  I  L  T  R  R :   *  S  I  S  I  P  R  M  Q  K  M  W  H  F  G  K  K  L  I  E  I  L  L  *  W  R  K  T  M  L  L  R  T  K  W  *  P  L  F  A  K  T  S  H  V  A  L  Q  S  V  T  R  K  L  *  N  R  C  S  R  S  R  *  T  S  K  S  S  S  R  V   : C  T  *  S  G  E  K  L  E  R  R  R  S  V  V  G  Y  A  L  Q  *  G  S  V  W  *  F  *  V  L  V  D  P  T  D  H  Y  T  A  D  Y  *  F  K  G  M  *  M  K  A  K  F  T  F  E  F  N  E  C  L  H  L  Y  S  *  A  S  P  G  V  R  K  Y  L  *  V  S  F  L  T  L  T  V  G  I  N  A  K  G  C  I  N  L  V  V  S  F  H  L  R  R  L  V  C   </second_frame>
            <third_frame>   Q  G  V  H  G  C  R  *  E  S  N  I  F  Y  *  E  T  P  L  *  *  T  D  A  Q  A  P  A  *  L  Q  E  W  S  L  Q  S  A  W  I  S  R  *  L  C  I  S  D  S  R  S  T  G  S  L  *  I  R  R  F  S  L  L  V  G  L  G  T  R  T  S  G  E  T   : G  R  V  I  S  R  Q  N  R  R  R  L  L  *  H  N  W  *  R  S  F  C  S  S  T  C  E  R  R  S  *  W  G  *  A  F  R  E  F  R  F  C  D  *  S  S  E  I  G  L  Y  G  C  W  *  K  I  K  T  L  Q  R  D  R  R  T  C  P   : G  G  F  *  E  E  V  E  R  S  S  C  C  C  A  T  D  V  L  C  S  R  Y  A  G  Y  S  V  Q  K  A  S  S  Y  S  R  S  E  V  F  *  G  V  *  K  H  G  Y  R  C  S  C  S  I  *  S  *  Q  D   : G  D  P  Y  R  S  Q  G  C  R  R  C  G  I  L  G  R  N  *  *  K  Y  C  S  D  G  E  K  Q  C  C  C  G  Q  S  G  S  P  C  L  P  K  L  H  M  *  P  S  S  Q  *  P  E  S  S  R  I  V  A  L  A  V  D  K  L  L  K  A  V  Q  E  C  :  V  H  K  V  V  K  S  W  R  G  G  D  P  S  L  V  M  R  C  N  K  A  L  Y  G  S  S  E  F  L  W  I  Q  L  I  I  I  L  Q  I  I  S  S  K  E  C  R  *  K  L  S  S  L  L  S  L  M  N  V  Y  T  C  I  V  R  P  V  L  V  L  E  N  I  Y  E  F  L  F  *  H  *  Q  L  E  *  M  Q  K  V  V  *  I  *  *  F  P  F  I  *  G  G  W  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5402" stop="5626"/>
                    <exon start="5693" stop="5896"/>
                    <exon start="5972" stop="6148"/>
                    <exon start="6239" stop="6424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKEYMDVAEKATYFIRKHLYNEQTRRLQHSFRNGPSKAPGFLDDYAFLIAGLLDLYEFGGSVFWLGWALELQEKQDELFLDKTGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASMVAGEKSKLYRETGEHVLAVFEKRLKEAAVAVPLMCCAADMLAIPSRKQVVIVGVKSSEEFESMVTAAHAAYDPNKTVIHIDPKDAEDVAFWEETNRNIALMAKNNAAADKVVALVCQNFTCSPPVSDPKALESLLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22189" PGL_stop="23116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22189" e_stop="22217"/>
            <exon e_start="22318" e_stop="23116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22189" e_stop="22217" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="22218" i_stop="22317" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="22318" e_stop="23116" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22189" stop="22217"/>
              <exon start="22318" stop="23116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22190" stop="22217"/>
              <exon start="22318" stop="22557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATGAGTCCCCTACTAGTATACTTCAG : ATTATGACCTCACATCCAATGAGCGATACCTTATTGTTATCCCCCCTCTCAGACGAGTTGATTAGCTTGACCGAAAATGAAAAGCATTGGGGAAAATGTGGATATGAAGGGAACAAAAAGGCAATCCTTGAATCTTTGCCATTAGCGAATGGTACTCATTATGCAAATGGAGAAGCTTCAGAGGCGAGGAAATTGGTAACTTCTGACAAAAAATCCTTGGCAAAGGGCAAAGGCTGTGCTAATGAAAATGATAGTGCCTTATTATCAAAGAAGGATATTGATAGTCTGGCCTGTGAAGAACTTGTTTCAAAGGCCTTGAAACTCCCTCTTTTATCTAATCCATACCCTAATGCTGCTGATCCTCCAAAAGATACAGAGAAGACAGTTGACAGTTCAAAAACAGCCACTAAGGGTAAGAGAAAAGAAGCATCCTCTGAGCGGACATCCAAGAAATTTTTGCTGCCTGTCACTGCAATAGACAAAAATTCTGTTGAAGGGTCTGGTGGAAAGGTTTCCTCATCTAGGAGAACTATGGAAATTAAAGGGACAGATTGTAATGATCATAGCTCAGGATACTTGAAGAAAGAAGGCCAAAACCAAGAGGAAAAAGCTGATGCTTCATCCAACAACGGACAGTCTAAAGATATGAATGTGCGAAACGTAGATGCAGTTAGTCCCCTCAAGCAGTCATCTCGTCAGAAAAGCTCCTCCAACAATGAGGATGGAATGAAACTGGCTCCTGAAAAGGAAGTTTTTGCATCTAGAGACACAATGAAACCCAAAGGAAATCAATGTCATC</gDNA_template>
            <first_frame> Q  M  S  P  L  L  V  Y  F  R :   L  *  P  H  I  Q  *  A  I  P  Y  C  Y  P  P  S  Q  T  S  *  L  A  *  P  K  M  K  S  I  G  E  N  V  D  M  K  G  T  K  R  Q  S  L  N  L  C  H  *  R  M  V  L  I  M  Q  M  E  K  L  Q  R  R  G  N  W  *  L  L  T  K  N  P  W  Q  R  A  K  A  V  L  M  K  M  I  V  P  Y  Y  Q  R  R  I  L  I  V  W  P  V  K  N  L  F  Q  R  P  *  N  S  L  F  Y  L  I  H  T  L  M  L  L  I  L  Q  K  I  Q  R  R  Q  L  T  V  Q  K  Q  P  L  R  V  R  E  K  K  H  P  L  S  G  H  P  R  N  F  C  C  L  S  L  Q  *  T  K  I  L  L  K  G  L  V  E  R  F  P  H  L  G  E  L  W  K  L  K  G  Q  I  V  M  I  I  A  Q  D  T  *  R  K  K  A  K  T  K  R  K  K  L  M  L  H  P  T  T  D  S  L  K  I  *  M  C  E  T  *  M  Q  L  V  P  S  S  S  H  L  V  R  K  A  P  P  T  M  R  M  E  *  N  W  L  L  K  R  K  F  L  H  L  E  T  Q  *  N  P  K  E  I  N  V  I </first_frame>
            <second_frame>  R  *  V  P  Y  *  Y  T  S   : D  Y  D  L  T  S  N  E  R  Y  L  I  V  I  P  P  L  R  R  V  D  *  L  D  R  K  *  K  A  L  G  K  M  W  I  *  R  E  Q  K  G  N  P  *  I  F  A  I  S  E  W  Y  S  L  C  K  W  R  S  F  R  G  E  E  I  G  N  F  *  Q  K  I  L  G  K  G  Q  R  L  C  *  *  K  *  *  C  L  I  I  K  E  G  Y  *  *  S  G  L  *  R  T  C  F  K  G  L  E  T  P  S  F  I  *  S  I  P  *  C  C  *  S  S  K  R  Y  R  E  D  S  *  Q  F  K  N  S  H  *  G  *  E  K  R  S  I  L  *  A  D  I  Q  E  I  F  A  A  C  H  C  N  R  Q  K  F  C  *  R  V  W  W  K  G  F  L  I  *  E  N  Y  G  N  *  R  D  R  L  *  *  S  *  L  R  I  L  E  E  R  R  P  K  P  R  G  K  S  *  C  F  I  Q  Q  R  T  V  *  R  Y  E  C  A  K  R  R  C  S  *  S  P  Q  A  V  I  S  S  E  K  L  L  Q  Q  *  G  W  N  E  T  G  S  *  K  G  S  F  C  I  *  R  H  N  E  T  Q  R  K  S  M  S   </second_frame>
            <third_frame>   D  E  S  P  T  S  I  L  Q  :  I  M  T  S  H  P  M  S  D  T  L  L  L  S  P  L  S  D  E  L  I  S  L  T  E  N  E  K  H  W  G  K  C  G  Y  E  G  N  K  K  A  I  L  E  S  L  P  L  A  N  G  T  H  Y  A  N  G  E  A  S  E  A  R  K  L  V  T  S  D  K  K  S  L  A  K  G  K  G  C  A  N  E  N  D  S  A  L  L  S  K  K  D  I  D  S  L  A  C  E  E  L  V  S  K  A  L  K  L  P  L  L  S  N  P  Y  P  N  A  A  D  P  P  K  D  T  E  K  T  V  D  S  S  K  T  A  T  K  G  K  R  K  E  A  S  S  E  R  T  S  K  K  F  L  L  P  V  T  A  I  D  K  N  S  V  E  G  S  G  G  K  V  S  S  S  R  R  T  M  E  I  K  G  T  D  C  N  D  H  S  S  G  Y  L  K  K  E  G  Q  N  Q  E  E  K  A  D  A  S  S  N  N  G  Q  S  K  D  M  N  V  R  N  V  D  A  V  S  P  L  K  Q  S  S  R  Q  K  S  S  S  N  N  E  D  G  M  K  L  A  P  E  K  E  V  F  A  S  R  D  T  M  K  P  K  G  N  Q  C  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22191" stop="22217"/>
                    <exon start="22318" stop="23115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DESPTSILQIMTSHPMSDTLLLSPLSDELISLTENEKHWGKCGYEGNKKAILESLPLANGTHYANGEASEARKLVTSDKKSLAKGKGCANENDSALLSKKDIDSLACEELVSKALKLPLLSNPYPNAADPPKDTEKTVDSSKTATKGKRKEASSERTSKKFLLPVTAIDKNSVEGSGGKVSSSRRTMEIKGTDCNDHSSGYLKKEGQNQEEKADASSNNGQSKDMNVRNVDAVSPLKQSSRQKSSSNNEDGMKLAPEKEVFASRDTMKPKGNQCH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25590" PGL_stop="26472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25590" e_stop="26231"/>
            <exon e_start="26353" e_stop="26472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25590" e_stop="26231" e_length="642"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26232" i_stop="26352" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26353" e_stop="26472" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25590" stop="26016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25713" stop="26231"/>
              <exon start="26353" stop="26472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25713" stop="26212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATGAATCTTCCGATCAAAGAATAGATGAGGGGAAATTGACATCCGGAAGAAACAAGGCTGAGGATAAATCTGGTGCCAGTTCTGACAGATTACAACAAGGTTATAAGAGAGATTCTTTTGGAGAATTGTTGAATGAGAATGTAAAAGGTGTTATTCAATCGAAATTTGTTGATGGTGCTGAAGTTAAATTGGATGTTATATCCGGCCTGGATAAAAGGCGGGCTGCTCTAACTGATCGAGATGATGGGAGATCGTCTAGGAAGCTTGCATCTGAAAAAACTCAGCAAATTGAAGTACTTGAGAAAGGGAAGTCACACTTAACATCTCCTTCAATAAGAGGTCAGAATGAGACAGTTCAATCTTCACAACCAGTTCCTGCATTCAAGAGGGAGGGTGTGGCTAACTTGTTGGCAGTAGATGCATTTGAAGGAGAGATGTTGAACGCTTCAAGACAGGGTAAAAAATCTGAAAGCCACCCTGGAAACAAACCTAATAGTTTGCGACAATCTACTCCACCTGCAAATAAGACCCGAGCTCCAGGCGCTCGCAGCCCTATTCGGAAGGATTCTGCAAGTCAGGCCGCTGCGAATGCCATTAAAGAAGCCACAAACCTAAAACATCTTGCAGATCGCCTCAAG : AACTCTGTGCCAAGTGAAAGCACGAGTCTCTATTTTCAAGCAACCCTAAAGTTTCTCCATGGAGCATCCTTGTTAGAATCATGCAACGACAGTGCCAAACACAGTGAAATGAATCAGTCG</gDNA_template>
            <first_frame> S  N  E  S  S  D  Q  R  I  D  E  G  K  L  T  S  G  R  N  K  A  E  D  K  S  G  A  S  S  D  R  L  Q  Q  G  Y  K  R  D  S  F  G  E  L  L  N  E  N  V  K  G  V  I  Q  S  K  F  V  D  G  A  E  V  K  L  D  V  I  S  G  L  D  K  R  R  A  A  L  T  D  R  D  D  G  R  S  S  R  K  L  A  S  E  K  T  Q  Q  I  E  V  L  E  K  G  K  S  H  L  T  S  P  S  I  R  G  Q  N  E  T  V  Q  S  S  Q  P  V  P  A  F  K  R  E  G  V  A  N  L  L  A  V  D  A  F  E  G  E  M  L  N  A  S  R  Q  G  K  K  S  E  S  H  P  G  N  K  P  N  S  L  R  Q  S  T  P  P  A  N  K  T  R  A  P  G  A  R  S  P  I  R  K  D  S  A  S  Q  A  A  A  N  A  I  K  E  A  T  N  L  K  H  L  A  D  R  L  K  :  N  S  V  P  S  E  S  T  S  L  Y  F  Q  A  T  L  K  F  L  H  G  A  S  L  L  E  S  C  N  D  S  A  K  H  S  E  M  N  Q  S </first_frame>
            <second_frame>  Q  M  N  L  P  I  K  E  *  M  R  G  N  *  H  P  E  E  T  R  L  R  I  N  L  V  P  V  L  T  D  Y  N  K  V  I  R  E  I  L  L  E  N  C  *  M  R  M  *  K  V  L  F  N  R  N  L  L  M  V  L  K  L  N  W  M  L  Y  P  A  W  I  K  G  G  L  L  *  L  I  E  M  M  G  D  R  L  G  S  L  H  L  K  K  L  S  K  L  K  Y  L  R  K  G  S  H  T  *  H  L  L  Q  *  E  V  R  M  R  Q  F  N  L  H  N  Q  F  L  H  S  R  G  R  V  W  L  T  C  W  Q  *  M  H  L  K  E  R  C  *  T  L  Q  D  R  V  K  N  L  K  A  T  L  E  T  N  L  I  V  C  D  N  L  L  H  L  Q  I  R  P  E  L  Q  A  L  A  A  L  F  G  R  I  L  Q  V  R  P  L  R  M  P  L  K  K  P  Q  T  *  N  I  L  Q  I  A  S  R :   T  L  C  Q  V  K  A  R  V  S  I  F  K  Q  P  *  S  F  S  M  E  H  P  C  *  N  H  A  T  T  V  P  N  T  V  K  *  I  S   </second_frame>
            <third_frame>   K  *  I  F  R  S  K  N  R  *  G  E  I  D  I  R  K  K  Q  G  *  G  *  I  W  C  Q  F  *  Q  I  T  T  R  L  *  E  R  F  F  W  R  I  V  E  *  E  C  K  R  C  Y  S  I  E  I  C  *  W  C  *  S  *  I  G  C  Y  I  R  P  G  *  K  A  G  C  S  N  *  S  R  *  W  E  I  V  *  E  A  C  I  *  K  N  S  A  N  *  S  T  *  E  R  E  V  T  L  N  I  S  F  N  K  R  S  E  *  D  S  S  I  F  T  T  S  S  C  I  Q  E  G  G  C  G  *  L  V  G  S  R  C  I  *  R  R  D  V  E  R  F  K  T  G  *  K  I  *  K  P  P  W  K  Q  T  *  *  F  A  T  I  Y  S  T  C  K  *  D  P  S  S  R  R  S  Q  P  Y  S  E  G  F  C  K  S  G  R  C  E  C  H  *  R  S  H  K  P  K  T  S  C  R  S  P  Q   : E  L  C  A  K  *  K  H  E  S  L  F  S  S  N  P  K  V  S  P  W  S  I  L  V  R  I  M  Q  R  Q  C  Q  T  Q  *  N  E  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25590" stop="26231"/>
                    <exon start="26353" stop="26472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNESSDQRIDEGKLTSGRNKAEDKSGASSDRLQQGYKRDSFGELLNENVKGVIQSKFVDGAEVKLDVISGLDKRRAALTDRDDGRSSRKLASEKTQQIEVLEKGKSHLTSPSIRGQNETVQSSQPVPAFKREGVANLLAVDAFEGEMLNASRQGKKSESHPGNKPNSLRQSTPPANKTRAPGARSPIRKDSASQAAANAIKEATNLKHLADRLKNSVPSESTSLYFQATLKFLHGASLLESCNDSAKHSEMNQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27469" PGL_stop="30319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27469" e_stop="27577"/>
            <exon e_start="28489" e_stop="28649"/>
            <exon e_start="29098" e_stop="30087"/>
            <exon e_start="30297" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27469" e_stop="27577" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.906">
            <gDNA_intron_boundary i_start="27578" i_stop="28488" i_length="911"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28489" e_stop="28649" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28650" i_stop="29097" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29098" e_stop="30087" e_length="990"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="30088" i_stop="30296" i_length="209"/>
          </intron>
          <exon e_serial="4" e_score="0.652">
            <gDNA_exon_boundary e_start="30297" e_stop="30319" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27469" stop="27577"/>
              <exon start="28489" stop="28649"/>
              <exon start="29098" stop="29341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27486" stop="27577"/>
              <exon start="28489" stop="28649"/>
              <exon start="29098" stop="29281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27487" stop="27577"/>
              <exon start="28489" stop="28649"/>
              <exon start="29098" stop="29726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28592" stop="28649"/>
              <exon start="29098" stop="29689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28592" stop="28649"/>
              <exon start="29098" stop="29476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28592" stop="28649"/>
              <exon start="29098" stop="29428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29469" stop="30087"/>
              <exon start="30297" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367819" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTATAAATGCATGGAGGTTGCGTACCTGCGAGTAATTTATTCCTCTAATTTCAATGCAAACAGATATAGAAATGAACTACAAACAGCCCTGCAAATTTTTCCTCCAG : GTGAATCCCCTTCCTCTTCTGCCTCAGATGTTGACAATTTGAACAATCCAACTATTGTAGACAAGGTTACCATGGCGAAAGGTGTTGCTTCTCCCCAGGTTACCGGAACTCATGCTGTCTCAGCGAGAAACCGTGCTAGCTTCACGCGGCTATTTAACTTT : GCACAGGAAGTTTATTTAGCTATGGACGCCTCCAGGAAATCACGTGTTGCTTTTGCAGCTGCTTATCCTGGACACAGTGATACACAGTGTAAAGTGCCTGCATTATCCGTAAAGAAGGCCCTTGATTTCAGCTTCCATGATGTCGACGACTTCTTACGTTTAGTCCGGATTGCCATGGAAGCTATTAGCCGTTGACATGTAAATTATGGCTAAAACCGTGTGAATCCATGAGACAAGACTCTTGAACCTGTTCCTCCTTTTGTTGTCAATTGAGGAGATGTCAGAAAGAGATCCTCTTGGTCGAGATATGATATATAACCTATCAAGTTATGAGTTCTACTCATAATGCCCTTGTAAATATGTACATAGCTGAAAACTATAGTTGGTAAGATATTTTCAATACAGCCATGGTTCCAATCTTACAGAAATAGGGGGCTTCACTGTTTGGTAGTCGGAAAAGCTTGTTTGACACAAGTTTTGAAGAAACGGGGAGGATTATAGTATCAGATAACTTTGTGGGGAAACAGATGAGATACATACTCATCTTTTGTTGCATTGTATATTCATCGCGCAGTTATGGAATGTATTTTTTACTCTCACAGACTGCAGATCTGCTGAGTTGTGCTGGATAAGAAGAGGTGAAAGCTAGAGTCAGAAGAGATGGCGGAAAATCATTCCTCATTGCATCAAGGGGACTATGTGGAGAGAGAGAGAGAGAGAGAAATAGTAGATGTTTTGAAGATAGGTCCAATTCCATCCATCGATTTCAATGGAATTGTATTGTATCTTTCTCTTTTTGGTGTAAACAAGCAGAGATAAGAGGAACTAGAGCTTGTAGATACTTTAGGCTCTCTGTAATTAGTTATCTTCCTTATTCTCTTCTTTTGAAGGTCTCCAACATATCCTTAATGTTGAGGAATACAACATTACTAGTTTCAAAAAAAAAATAATAATAATAAGAAAGTTGGTGGTTCTTTCATTAATTTATAA : AAAGAAAAATTCAAAGAGATGAA</gDNA_template>
            <first_frame> S  Y  K  C  M  E  V  A  Y  L  R  V  I  Y  S  S  N  F  N  A  N  R  Y  R  N  E  L  Q  T  A  L  Q  I  F  P  P   : G  E  S  P  S  S  S  A  S  D  V  D  N  L  N  N  P  T  I  V  D  K  V  T  M  A  K  G  V  A  S  P  Q  V  T  G  T  H  A  V  S  A  R  N  R  A  S  F  T  R  L  F  N  F  :  A  Q  E  V  Y  L  A  M  D  A  S  R  K  S  R  V  A  F  A  A  A  Y  P  G  H  S  D  T  Q  C  K  V  P  A  L  S  V  K  K  A  L  D  F  S  F  H  D  V  D  D  F  L  R  L  V  R  I  A  M  E  A  I  S  R  *  H  V  N  Y  G  *  N  R  V  N  P  *  D  K  T  L  E  P  V  P  P  F  V  V  N  *  G  D  V  R  K  R  S  S  W  S  R  Y  D  I  *  P  I  K  L  *  V  L  L  I  M  P  L  *  I  C  T  *  L  K  T  I  V  G  K  I  F  S  I  Q  P  W  F  Q  S  Y  R  N  R  G  L  H  C  L  V  V  G  K  A  C  L  T  Q  V  L  K  K  R  G  G  L  *  Y  Q  I  T  L  W  G  N  R  *  D  T  Y  S  S  F  V  A  L  Y  I  H  R  A  V  M  E  C  I  F  Y  S  H  R  L  Q  I  C  *  V  V  L  D  K  K  R  *  K  L  E  S  E  E  M  A  E  N  H  S  S  L  H  Q  G  D  Y  V  E  R  E  R  E  R  E  I  V  D  V  L  K  I  G  P  I  P  S  I  D  F  N  G  I  V  L  Y  L  S  L  F  G  V  N  K  Q  R  *  E  E  L  E  L  V  D  T  L  G  S  L  *  L  V  I  F  L  I  L  F  F  *  R  S  P  T  Y  P  *  C  *  G  I  Q  H  Y  *  F  Q  K  K  N  N  N  N  K  K  V  G  G  S  F  I  N  L  *  :  K  E  K  F  K  E  M   </first_frame>
            <second_frame>  P  I  N  A  W  R  L  R  T  C  E  *  F  I  P  L  I  S  M  Q  T  D  I  E  M  N  Y  K  Q  P  C  K  F  F  L  Q  :  V  N  P  L  P  L  L  P  Q  M  L  T  I  *  T  I  Q  L  L  *  T  R  L  P  W  R  K  V  L  L  L  P  R  L  P  E  L  M  L  S  Q  R  E  T  V  L  A  S  R  G  Y  L  T  L :   H  R  K  F  I  *  L  W  T  P  P  G  N  H  V  L  L  L  Q  L  L  I  L  D  T  V  I  H  S  V  K  C  L  H  Y  P  *  R  R  P  L  I  S  A  S  M  M  S  T  T  S  Y  V  *  S  G  L  P  W  K  L  L  A  V  D  M  *  I  M  A  K  T  V  *  I  H  E  T  R  L  L  N  L  F  L  L  L  L  S  I  E  E  M  S  E  R  D  P  L  G  R  D  M  I  Y  N  L  S  S  Y  E  F  Y  S  *  C  P  C  K  Y  V  H  S  *  K  L  *  L  V  R  Y  F  Q  Y  S  H  G  S  N  L  T  E  I  G  G  F  T  V  W  *  S  E  K  L  V  *  H  K  F  *  R  N  G  E  D  Y  S  I  R  *  L  C  G  E  T  D  E  I  H  T  H  L  L  L  H  C  I  F  I  A  Q  L  W  N  V  F  F  T  L  T  D  C  R  S  A  E  L  C  W  I  R  R  G  E  S  *  S  Q  K  R  W  R  K  I  I  P  H  C  I  K  G  T  M  W  R  E  R  E  R  E  K  *  *  M  F  *  R  *  V  Q  F  H  P  S  I  S  M  E  L  Y  C  I  F  L  F  L  V  *  T  S  R  D  K  R  N  *  S  L  *  I  L  *  A  L  C  N  *  L  S  S  L  F  S  S  F  E  G  L  Q  H  I  L  N  V  E  E  Y  N  I  T  S  F  K  K  K  I  I  I  I  R  K  L  V  V  L  S  L  I  Y  K :   K  K  N  S  K  R  *  </second_frame>
            <third_frame>   L  *  M  H  G  G  C  V  P  A  S  N  L  F  L  *  F  Q  C  K  Q  I  *  K  *  T  T  N  S  P  A  N  F  S  S  R :   *  I  P  F  L  F  C  L  R  C  *  Q  F  E  Q  S  N  Y  C  R  Q  G  Y  H  G  E  R  C  C  F  S  P  G  Y  R  N  S  C  C  L  S  E  K  P  C  *  L  H  A  A  I  *  L   : C  T  G  S  L  F  S  Y  G  R  L  Q  E  I  T  C  C  F  C  S  C  L  S  W  T  Q  *  Y  T  V  *  S  A  C  I  I  R  K  E  G  P  *  F  Q  L  P  *  C  R  R  L  L  T  F  S  P  D  C  H  G  S  Y  *  P  L  T  C  K  L  W  L  K  P  C  E  S  M  R  Q  D  S  *  T  C  S  S  F  C  C  Q  L  R  R  C  Q  K  E  I  L  L  V  E  I  *  Y  I  T  Y  Q  V  M  S  S  T  H  N  A  L  V  N  M  Y  I  A  E  N  Y  S  W  *  D  I  F  N  T  A  M  V  P  I  L  Q  K  *  G  A  S  L  F  G  S  R  K  S  L  F  D  T  S  F  E  E  T  G  R  I  I  V  S  D  N  F  V  G  K  Q  M  R  Y  I  L  I  F  C  C  I  V  Y  S  S  R  S  Y  G  M  Y  F  L  L  S  Q  T  A  D  L  L  S  C  A  G  *  E  E  V  K  A  R  V  R  R  D  G  G  K  S  F  L  I  A  S  R  G  L  C  G  E  R  E  R  E  R  N  S  R  C  F  E  D  R  S  N  S  I  H  R  F  Q  W  N  C  I  V  S  F  S  F  W  C  K  Q  A  E  I  R  G  T  R  A  C  R  Y  F  R  L  S  V  I  S  Y  L  P  Y  S  L  L  L  K  V  S  N  I  S  L  M  L  R  N  T  T  L  L  V  S  K  K  K  *  *  *  *  E  S  W  W  F  F  H  *  F  I   : K  R  K  I  Q  R  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27469" stop="27577"/>
                    <exon start="28489" stop="28649"/>
                    <exon start="29098" stop="29292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYKCMEVAYLRVIYSSNFNANRYRNELQTALQIFPPGESPSSSASDVDNLNNPTIVDKVTMAKGVASPQVTGTHAVSARNRASFTRLFNFAQEVYLAMDASRKSRVAFAAAYPGHSDTQCKVPALSVKKALDFSFHDVDDFLRLVRIAMEAISR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29730" stop="30047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEVKARVRRDGGKSFLIASRGLCGERERERNSRCFEDRSNSIHRFQWNCIVSFSFWCKQAEIRGTRACRYFRLSVISYLPYSLLLKVSNISLMLRNTTLLVSKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29529" stop="29729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GASLFGSRKSLFDTSFEETGRIIVSDNFVGKQMRYILIFCCIVYSSRSYGMYFLLSQTADLLSCAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35227" PGL_stop="31670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35227" e_stop="35213"/>
            <exon e_start="35133" e_stop="35047"/>
            <exon e_start="34955" e_stop="34806"/>
            <exon e_start="34715" e_stop="34660"/>
            <exon e_start="34551" e_stop="34431"/>
            <exon e_start="34345" e_stop="34184"/>
            <exon e_start="34073" e_stop="33930"/>
            <exon e_start="33846" e_stop="33628"/>
            <exon e_start="33535" e_stop="33368"/>
            <exon e_start="32202" e_stop="31847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35227" e_stop="35213" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35212" i_stop="35134" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35133" e_stop="35047" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.982">
            <gDNA_intron_boundary i_start="35046" i_stop="34956" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34955" e_stop="34806" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.780" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34715" e_stop="34660" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34551" e_stop="34431" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.970">
            <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34345" e_stop="34184" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.924" acc_prob="0.988">
            <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34073" e_stop="33930" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.766">
            <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33846" e_stop="33628" e_length="219"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33535" e_stop="33368" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="32202" e_stop="31847" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35227" stop="35213"/>
              <exon start="35133" stop="35047"/>
              <exon start="34955" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35088" stop="35047"/>
              <exon start="34955" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34891" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34891" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34487" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34288" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33737" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="31919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33736" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="31875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33452" stop="33368"/>
              <exon start="32202" stop="31847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256804" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33368"/>
              <exon start="32202" stop="31847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551337" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGAGAGCAGCAG : GTCTTCGTTAGAAAGTTGATTGAGCTTCACGATAAGTATATGGCTTATGTTACGAACTGTTTTGCTAATAACTCTCTCTTTCATAAG : GCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAG : GTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAG : GAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG : GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG : GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG : GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG : CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</gDNA_template>
            <first_frame> S  G  E  Q  Q  :  V  F  V  R  K  L  I  E  L  H  D  K  Y  M  A  Y  V  T  N  C  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  S  G  C  S  S  A  E  L  L  A  S  F  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  D  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  R  E  N  Q  N  H  F  Q  E  Y  L  S  N  N  P  A  A  S  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  C  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  D  S  K  T  I  E  L  I  L  G  T  Y  Q  :  A  A  V  L  L  L  F  N  S  S  D  R  L  S  Y  S  E  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  I  K  E  P  S  N  R  T  V  S  S  S  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  V  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  S  N  N  L  C  A  R  L  I  F  F  F  V  L  C  T  S  H  *  I  Q  L  A  S  P  C  H  L  I  G  I  V  A  Q  I  I  F  L  T  F  A  *  *  *  E  L  C  Q  L  L  G  I  T  P  P  S  F  F  V  K  K  L  A  E  T  L  L  S  L  *  Y  F  L  H  F  K  L  I  E  L  V  R  Y  Y   </first_frame>
            <second_frame>  Q  E  S  S  R :   S  S  L  E  S  *  L  S  F  T  I  S  I  W  L  M  L  R  T  V  L  L  I  T  L  S  F  I  R :   L  S  R  R  H  L  R  S  S  A  T  K  L  Y  L  V  V  Q  V  Q  S  S  L  L  L  F  V  I  I  F  L  R  K  V  G  A  K  N  S  V  M  M  I  L  R  R  P  W  I  R :   W  S  S  F  S  L  I  L  V  I  K  T  F  L  Q  S  S  T   : G  R  S  F  L  V  D  C  S  S  I  K  V  P  M  M  T  T  K  G  L  S  *  Q  S  *  S  N  S  V  V  G  S  S  H  Q  R  W  R  G  W :   *  Q  T  *  L  W  L  G  K  I  K  T  I  F  K  N  I  S  A  T  T  L  P  Q  V  L  E  L  I  *  L  S  Q  F  L  Q  L  G  S  G  L  V  I  N  L  L  I  C  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  S  I  R  Q  K  R  N  T  G  N  *  H  G  F  I  H  W  V  R  V  T  S  T  G  S  L  I  Q  K  P  L  N  *  F  W  E  L  I  R :   L  L  F  C  Y  C  L  I  L  Q  I  D  *  V  T  Q  K  S  R  V  S  *  I  W  L  M  M  T  *  S  D  C  F  S  P  F  H  V  P  S  I  K  F  *  S  R  N  L  A  I  E  L  F  L  L  L  I  I  L  S  S  T  P  S  S  L  T  G  *  G  G  L  G :   S  H  Y  L  L  W  M  K  G  K  R  *  S  R  M  *  T  K  I  D  V  M  Q  L  M  P  V  S  C  A  L  *  R  V  G  K  F  F  L  I  N  N  *  C  W  S  V  L  S  S  *  A  E  C  L  S :   L  T  S  K  Q  S  K  S  E  L  K  I  S  S  L  E  I  T  W  K  E  T  K  R  T  R  I  C  S  S  I  *  P  E  A  I  I  C  V  L  G  *  F  F  F  L  F  S  A  H  H  I  E  Y  N  W  L  L  H  V  T  *  *  G  L  *  H  R  *  F  F  L  L  L  P  S  S  R  N  C  A  S  Y  W  V  S  H  H  L  H  F  S  S  R  S  W  R  K  L  C  C  L  Y  S  T  S  S  I  S  N  *  L  N  W  *  D  I  I  </second_frame>
            <third_frame>   R  R  A  A   : G  L  R  *  K  V  D  *  A  S  R  *  V  Y  G  L  C  Y  E  L  F  C  *  *  L  S  L  S  *   : G  S  Q  G  G  I  *  G  L  L  Q  Q  N  C  I  W  L  F  K  C  R  A  P  C  F  F  L  *  *  Y  S  *  E  R  W  E  R  K  T  Q  *  *  *  Y  *  G  D  L  G  *   : G  G  Q  A  S  R  L  Y  *  *  *  R  P  F  C  R  V  L  Q  :  E  E  A  F  S  S  T  A  L  R  *  K  C  Q  *  *  P  R  K  A  Y  L  N  K  A  K  A  T  V  W  W  A  V  H  I  K  D  G  G  D   : G  D  R  L  D  F  G  *  G  K  S  K  P  F  S  R  I  S  Q  Q  Q  P  C  R  K  S  W  N  *  F  N  C  H  S  S  Y  N  W  V  L  A  *  L  *  I  F  *  F  V  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  K  N  E  T  Q  E  I  D  M  D  L  F  I  G  Y  V  *  H  Q  R  E  V  *  F  K  N  H  *  T  D  S  G  N  L  S   : G  C  C  F  V  I  V  *  F  F  R  *  I  E  L  L  R  N  Q  E  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  V  P  F  M  C  Q  V  *  N  S  D  Q  G  T  *  Q  *  N  C  F  F  F  *  S  F  *  V  Q  L  Q  V  H  *  Q  D  E  A  D  *   : G  P  I  T  S  C  G  *  K  E  K  G  S  R  G  C  R  Q  R  *  T  L  C  N  *  C  L  Y  R  A  H  Y  E  E  S  E  S  S  S  S  S  T  T  S  V  G  V  C  *  A  V  E  P  N  V  *   : A  *  L  Q  S  N  Q  K  A  N  *  R  S  H  H  *  R  L  L  G  K  R  Q  R  E  P  E  F  V  Q  V  F  S  L  K  Q  *  S  V  C  S  A  D  F  F  F  C  S  L  H  I  T  L  N  T  T  G  F  S  M  S  L  N  R  D  C  S  T  D  N  F  S  Y  F  C  L  V  V  G  T  V  P  V  I  G  Y  H  T  T  F  I  F  R  Q  E  V  G  G  N  F  A  V  F  I  V  L  P  P  F  Q  I  N  *  I  G  E  I  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35227" stop="35213"/>
                    <exon start="35133" stop="35047"/>
                    <exon start="34955" stop="34806"/>
                    <exon start="34715" stop="34660"/>
                    <exon start="34551" stop="34431"/>
                    <exon start="34345" stop="34184"/>
                    <exon start="34073" stop="33930"/>
                    <exon start="33846" stop="33628"/>
                    <exon start="33535" stop="33368"/>
                    <exon start="32202" stop="32101"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGEQQVFVRKLIELHDKYMAYVTNCFANNSLFHKALKEAFEVFCNKIVSGCSSAELLASFCDNILKKGGSEKLSDDDIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLARENQNHFQEYLSNNPAASPGIDLTVTVLTTGFWPSYKSSDLCLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFDSKTIELILGTYQAAVLLLFNSSDRLSYSEIKSQLNLADDDLIRLLQSLSCAKYKILIKEPSNRTVSSSDHFEFNSKFTDRMRRIRVPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32092" stop="31865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVCSADFFFCSLHITLNTTGFSMSLNRDCSTDNFSYFCLVVGTVPVIGYHTTFIFRQEVGGNFAVFIVLPPFQIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35227" e_stop="35213"/>
            <exon e_start="35133" e_stop="35047"/>
            <exon e_start="34955" e_stop="34806"/>
            <exon e_start="34715" e_stop="34660"/>
            <exon e_start="34551" e_stop="34431"/>
            <exon e_start="34345" e_stop="34184"/>
            <exon e_start="34073" e_stop="33930"/>
            <exon e_start="33846" e_stop="33628"/>
            <exon e_start="33535" e_stop="33368"/>
            <exon e_start="32202" e_stop="31973"/>
            <exon e_start="31705" e_stop="31670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.891"/>
          <exon-only e_score="0.472"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35227" e_stop="35213" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35212" i_stop="35134" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35133" e_stop="35047" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.982">
            <gDNA_intron_boundary i_start="35046" i_stop="34956" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34955" e_stop="34806" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.780" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34805" i_stop="34716" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34715" e_stop="34660" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34659" i_stop="34552" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34551" e_stop="34431" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.970">
            <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34345" e_stop="34184" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.924" acc_prob="0.988">
            <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34073" e_stop="33930" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.766">
            <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33846" e_stop="33628" e_length="219"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33535" e_stop="33368" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165"/>
          </intron>
          <exon e_serial="10" e_score="0.891">
            <gDNA_exon_boundary e_start="32202" e_stop="31973" e_length="230"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="31972" i_stop="31706" i_length="267"/>
          </intron>
          <exon e_serial="11" e_score="0.472">
            <gDNA_exon_boundary e_start="31705" e_stop="31670" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35227" stop="35213"/>
              <exon start="35133" stop="35047"/>
              <exon start="34955" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35088" stop="35047"/>
              <exon start="34955" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34891" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34891" stop="34806"/>
              <exon start="34715" stop="34660"/>
              <exon start="34551" stop="34448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34487" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34288" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34048" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="31973"/>
              <exon start="31705" stop="31670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610693" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGAGAGCAGCAG : GTCTTCGTTAGAAAGTTGATTGAGCTTCACGATAAGTATATGGCTTATGTTACGAACTGTTTTGCTAATAACTCTCTCTTTCATAAG : GCTCTCAAGGAGGCATTTGAGGTCTTCTGCAACAAAATTGTATCTGGTTGTTCAAGTGCAGAGCTCCTTGCTTCTTTTTGTGATAATATTCTTAAGAAAGGTGGGAGCGAAAAACTCAGTGATGATGATATTGAGGAGACCTTGGATAAG : GTGGTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAG : GAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG : GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG : GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG : GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG : CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTA : TGTTAAAGAATGACAAAAGTTCCACATCGGTGGTTT</gDNA_template>
            <first_frame> S  G  E  Q  Q  :  V  F  V  R  K  L  I  E  L  H  D  K  Y  M  A  Y  V  T  N  C  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  S  G  C  S  S  A  E  L  L  A  S  F  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  D  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  R  E  N  Q  N  H  F  Q  E  Y  L  S  N  N  P  A  A  S  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  C  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  D  S  K  T  I  E  L  I  L  G  T  Y  Q  :  A  A  V  L  L  L  F  N  S  S  D  R  L  S  Y  S  E  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  I  K  E  P  S  N  R  T  V  S  S  S  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  V  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  S  N  N  L  C  A  R  L  I  F  F  F  V  L  C  T  S  H  *  I  Q  L  A  S  P  C  H  L  I  G  I  V  A  Q  I  I  F  L  T  F  A  *  Y :   V  K  E  *  Q  K  F  H  I  G  G   </first_frame>
            <second_frame>  Q  E  S  S  R :   S  S  L  E  S  *  L  S  F  T  I  S  I  W  L  M  L  R  T  V  L  L  I  T  L  S  F  I  R :   L  S  R  R  H  L  R  S  S  A  T  K  L  Y  L  V  V  Q  V  Q  S  S  L  L  L  F  V  I  I  F  L  R  K  V  G  A  K  N  S  V  M  M  I  L  R  R  P  W  I  R :   W  S  S  F  S  L  I  L  V  I  K  T  F  L  Q  S  S  T   : G  R  S  F  L  V  D  C  S  S  I  K  V  P  M  M  T  T  K  G  L  S  *  Q  S  *  S  N  S  V  V  G  S  S  H  Q  R  W  R  G  W :   *  Q  T  *  L  W  L  G  K  I  K  T  I  F  K  N  I  S  A  T  T  L  P  Q  V  L  E  L  I  *  L  S  Q  F  L  Q  L  G  S  G  L  V  I  N  L  L  I  C  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  S  I  R  Q  K  R  N  T  G  N  *  H  G  F  I  H  W  V  R  V  T  S  T  G  S  L  I  Q  K  P  L  N  *  F  W  E  L  I  R :   L  L  F  C  Y  C  L  I  L  Q  I  D  *  V  T  Q  K  S  R  V  S  *  I  W  L  M  M  T  *  S  D  C  F  S  P  F  H  V  P  S  I  K  F  *  S  R  N  L  A  I  E  L  F  L  L  L  I  I  L  S  S  T  P  S  S  L  T  G  *  G  G  L  G :   S  H  Y  L  L  W  M  K  G  K  R  *  S  R  M  *  T  K  I  D  V  M  Q  L  M  P  V  S  C  A  L  *  R  V  G  K  F  F  L  I  N  N  *  C  W  S  V  L  S  S  *  A  E  C  L  S :   L  T  S  K  Q  S  K  S  E  L  K  I  S  S  L  E  I  T  W  K  E  T  K  R  T  R  I  C  S  S  I  *  P  E  A  I  I  C  V  L  G  *  F  F  F  L  F  S  A  H  H  I  E  Y  N  W  L  L  H  V  T  *  *  G  L  *  H  R  *  F  F  L  L  L  P  S   : M  L  K  N  D  K  S  S  T  S  V  V  </second_frame>
            <third_frame>   R  R  A  A   : G  L  R  *  K  V  D  *  A  S  R  *  V  Y  G  L  C  Y  E  L  F  C  *  *  L  S  L  S  *   : G  S  Q  G  G  I  *  G  L  L  Q  Q  N  C  I  W  L  F  K  C  R  A  P  C  F  F  L  *  *  Y  S  *  E  R  W  E  R  K  T  Q  *  *  *  Y  *  G  D  L  G  *   : G  G  Q  A  S  R  L  Y  *  *  *  R  P  F  C  R  V  L  Q  :  E  E  A  F  S  S  T  A  L  R  *  K  C  Q  *  *  P  R  K  A  Y  L  N  K  A  K  A  T  V  W  W  A  V  H  I  K  D  G  G  D   : G  D  R  L  D  F  G  *  G  K  S  K  P  F  S  R  I  S  Q  Q  Q  P  C  R  K  S  W  N  *  F  N  C  H  S  S  Y  N  W  V  L  A  *  L  *  I  F  *  F  V  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  K  N  E  T  Q  E  I  D  M  D  L  F  I  G  Y  V  *  H  Q  R  E  V  *  F  K  N  H  *  T  D  S  G  N  L  S   : G  C  C  F  V  I  V  *  F  F  R  *  I  E  L  L  R  N  Q  E  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  V  P  F  M  C  Q  V  *  N  S  D  Q  G  T  *  Q  *  N  C  F  F  F  *  S  F  *  V  Q  L  Q  V  H  *  Q  D  E  A  D  *   : G  P  I  T  S  C  G  *  K  E  K  G  S  R  G  C  R  Q  R  *  T  L  C  N  *  C  L  Y  R  A  H  Y  E  E  S  E  S  S  S  S  S  T  T  S  V  G  V  C  *  A  V  E  P  N  V  *   : A  *  L  Q  S  N  Q  K  A  N  *  R  S  H  H  *  R  L  L  G  K  R  Q  R  E  P  E  F  V  Q  V  F  S  L  K  Q  *  S  V  C  S  A  D  F  F  F  C  S  L  H  I  T  L  N  T  T  G  F  S  M  S  L  N  R  D  C  S  T  D  N  F  S  Y  F  C  L  V  :  C  *  R  M  T  K  V  P  H  R  W  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35227" stop="35213"/>
                    <exon start="35133" stop="35047"/>
                    <exon start="34955" stop="34806"/>
                    <exon start="34715" stop="34660"/>
                    <exon start="34551" stop="34431"/>
                    <exon start="34345" stop="34184"/>
                    <exon start="34073" stop="33930"/>
                    <exon start="33846" stop="33628"/>
                    <exon start="33535" stop="33368"/>
                    <exon start="32202" stop="32101"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGEQQVFVRKLIELHDKYMAYVTNCFANNSLFHKALKEAFEVFCNKIVSGCSSAELLASFCDNILKKGGSEKLSDDDIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLARENQNHFQEYLSNNPAASPGIDLTVTVLTTGFWPSYKSSDLCLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFDSKTIELILGTYQAAVLLLFNSSDRLSYSEIKSQLNLADDDLIRLLQSLSCAKYKILIKEPSNRTVSSSDHFEFNSKFTDRMRRIRVPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34712" e_stop="34431"/>
            <exon e_start="34345" e_stop="34184"/>
            <exon e_start="34073" e_stop="33930"/>
            <exon e_start="33846" e_stop="33628"/>
            <exon e_start="33535" e_stop="33368"/>
            <exon e_start="32202" e_stop="31847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.970" e_score="0.943"/>
          <exon-intron don_prob="0.924" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="34712" e_stop="34431" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.970">
            <gDNA_intron_boundary i_start="34430" i_stop="34346" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34345" e_stop="34184" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.988">
            <gDNA_intron_boundary i_start="34183" i_stop="34074" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34073" e_stop="33930" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.766">
            <gDNA_intron_boundary i_start="33929" i_stop="33847" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33846" e_stop="33628" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33627" i_stop="33536" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33535" e_stop="33368" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33367" i_stop="32203" i_length="1165"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32202" e_stop="31847" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34712" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="34054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34487" stop="34431"/>
              <exon start="34345" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34288" stop="34184"/>
              <exon start="34073" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33930"/>
              <exon start="33846" stop="33628"/>
              <exon start="33535" stop="33451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33737" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="31919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33736" stop="33628"/>
              <exon start="33535" stop="33368"/>
              <exon start="32202" stop="31875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33452" stop="33368"/>
              <exon start="32202" stop="31847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256804" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33368"/>
              <exon start="32202" stop="31847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551337" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGCTTCTCGCTTATATTAGTGATAAAGACCTTTTTGCAGAGTTCTACAGGTGGGTTAGATAGTCCAACAGTTTTTTTTGATATAGTTACCTTAGGTAGTTACCTTAGGTTGAATTTTCATTTTACCGTTCGGAATGTCCATTGTCTTGGTGTGATAGGAAGAAGCTTTCTCGTCGACTGCTCTTCGATAAAAGTGCCAATGATGACCACGAAAGGCTTATCTTAACAAAGCTAAAGCAACAGTGTGGTGGGCAGTTCACATCAAAGATGGAGGGGATG : GTGACAGACTTGACTTTGGCTAGGGAAAATCAAAACCATTTTCAAGAATATCTCAGCAACAACCCTGCCGCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAG : GCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGG : GTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATGAAGAGTCGGAAAGTTCTTCCTCATCAACAACTAGTGTTGGAGTGTGTTGAGCAGTTGAGCCGAATGTTTAAG : CCTGACTTCAAAGCAATCAAAAAGCGAATTGAAGATCTCATCACTAGAGATTACTTGGAAAGAGACAAAGAGAACCCGAATTTGTTCAAGTATTTAGCCTGAAGCAATAATCTGTGTGCTCGGCTGATTTTTTTTTTTGTTCTCTGCACATCACATTGAATACAACTGGCTTCTCCATGTCACTTAATAGGGATTGTAGCACAGATAATTTTTCTTACTTTTGCCTAGTAGTAGGAACTGTGCCAGTTATTGGGTATCACACCACCTTCATTTTTCGTCAAGAAGTTGGCGGAAACTTTGCTGTCTTTATAGTACTTCCTCCATTTCAAATTAATTGAATTGGTGAGATATTATTC</gDNA_template>
            <first_frame> V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R  W  V  R  *  S  N  S  F  F  *  Y  S  Y  L  R  *  L  P  *  V  E  F  S  F  Y  R  S  E  C  P  L  S  W  C  D  R  K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  R  E  N  Q  N  H  F  Q  E  Y  L  S  N  N  P  A  A  S  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  C  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  D  S  K  T  I  E  L  I  L  G  T  Y  Q  :  A  A  V  L  L  L  F  N  S  S  D  R  L  S  Y  S  E  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  I  K  E  P  S  N  R  T  V  S  S  S  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  V  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  S  N  N  L  C  A  R  L  I  F  F  F  V  L  C  T  S  H  *  I  Q  L  A  S  P  C  H  L  I  G  I  V  A  Q  I  I  F  L  T  F  A  *  *  *  E  L  C  Q  L  L  G  I  T  P  P  S  F  F  V  K  K  L  A  E  T  L  L  S  L  *  Y  F  L  H  F  K  L  I  E  L  V  R  Y  Y   </first_frame>
            <second_frame>  S  S  F  S  L  I  L  V  I  K  T  F  L  Q  S  S  T  G  G  L  D  S  P  T  V  F  F  D  I  V  T  L  G  S  Y  L  R  L  N  F  H  F  T  V  R  N  V  H  C  L  G  V  I  G  R  S  F  L  V  D  C  S  S  I  K  V  P  M  M  T  T  K  G  L  S  *  Q  S  *  S  N  S  V  V  G  S  S  H  Q  R  W  R  G  W :   *  Q  T  *  L  W  L  G  K  I  K  T  I  F  K  N  I  S  A  T  T  L  P  Q  V  L  E  L  I  *  L  S  Q  F  L  Q  L  G  S  G  L  V  I  N  L  L  I  C  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  S  I  R  Q  K  R  N  T  G  N  *  H  G  F  I  H  W  V  R  V  T  S  T  G  S  L  I  Q  K  P  L  N  *  F  W  E  L  I  R :   L  L  F  C  Y  C  L  I  L  Q  I  D  *  V  T  Q  K  S  R  V  S  *  I  W  L  M  M  T  *  S  D  C  F  S  P  F  H  V  P  S  I  K  F  *  S  R  N  L  A  I  E  L  F  L  L  L  I  I  L  S  S  T  P  S  S  L  T  G  *  G  G  L  G :   S  H  Y  L  L  W  M  K  G  K  R  *  S  R  M  *  T  K  I  D  V  M  Q  L  M  P  V  S  C  A  L  *  R  V  G  K  F  F  L  I  N  N  *  C  W  S  V  L  S  S  *  A  E  C  L  S :   L  T  S  K  Q  S  K  S  E  L  K  I  S  S  L  E  I  T  W  K  E  T  K  R  T  R  I  C  S  S  I  *  P  E  A  I  I  C  V  L  G  *  F  F  F  L  F  S  A  H  H  I  E  Y  N  W  L  L  H  V  T  *  *  G  L  *  H  R  *  F  F  L  L  L  P  S  S  R  N  C  A  S  Y  W  V  S  H  H  L  H  F  S  S  R  S  W  R  K  L  C  C  L  Y  S  T  S  S  I  S  N  *  L  N  W  *  D  I  I  </second_frame>
            <third_frame>   Q  A  S  R  L  Y  *  *  *  R  P  F  C  R  V  L  Q  V  G  *  I  V  Q  Q  F  F  L  I  *  L  P  *  V  V  T  L  G  *  I  F  I  L  P  F  G  M  S  I  V  L  V  *  *  E  E  A  F  S  S  T  A  L  R  *  K  C  Q  *  *  P  R  K  A  Y  L  N  K  A  K  A  T  V  W  W  A  V  H  I  K  D  G  G  D   : G  D  R  L  D  F  G  *  G  K  S  K  P  F  S  R  I  S  Q  Q  Q  P  C  R  K  S  W  N  *  F  N  C  H  S  S  Y  N  W  V  L  A  *  L  *  I  F  *  F  V  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  K  N  E  T  Q  E  I  D  M  D  L  F  I  G  Y  V  *  H  Q  R  E  V  *  F  K  N  H  *  T  D  S  G  N  L  S   : G  C  C  F  V  I  V  *  F  F  R  *  I  E  L  L  R  N  Q  E  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  V  P  F  M  C  Q  V  *  N  S  D  Q  G  T  *  Q  *  N  C  F  F  F  *  S  F  *  V  Q  L  Q  V  H  *  Q  D  E  A  D  *   : G  P  I  T  S  C  G  *  K  E  K  G  S  R  G  C  R  Q  R  *  T  L  C  N  *  C  L  Y  R  A  H  Y  E  E  S  E  S  S  S  S  S  T  T  S  V  G  V  C  *  A  V  E  P  N  V  *   : A  *  L  Q  S  N  Q  K  A  N  *  R  S  H  H  *  R  L  L  G  K  R  Q  R  E  P  E  F  V  Q  V  F  S  L  K  Q  *  S  V  C  S  A  D  F  F  F  C  S  L  H  I  T  L  N  T  T  G  F  S  M  S  L  N  R  D  C  S  T  D  N  F  S  Y  F  C  L  V  V  G  T  V  P  V  I  G  Y  H  T  T  F  I  F  R  Q  E  V  G  G  N  F  A  V  F  I  V  L  P  P  F  Q  I  N  *  I  G  E  I  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34601" stop="34431"/>
                    <exon start="34345" stop="34184"/>
                    <exon start="34073" stop="33930"/>
                    <exon start="33846" stop="33628"/>
                    <exon start="33535" stop="33368"/>
                    <exon start="32202" stop="32101"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEFSFYRSECPLSWCDRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLARENQNHFQEYLSNNPAASPGIDLTVTVLTTGFWPSYKSSDLCLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFDSKTIELILGTYQAAVLLLFNSSDRLSYSEIKSQLNLADDDLIRLLQSLSCAKYKILIKEPSNRTVSSSDHFEFNSKFTDRMRRIRVPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32092" stop="31865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVCSADFFFCSLHITLNTTGFSMSLNRDCSTDNFSYFCLVVGTVPVIGYHTTFIFRQEVGGNFAVFIVLPPFQIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="39313" PGL_stop="37890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39313" e_stop="39227"/>
            <exon e_start="38323" e_stop="38161"/>
            <exon e_start="37939" e_stop="37890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.432" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39313" e_stop="39227" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39226" i_stop="38324" i_length="903"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38323" e_stop="38161" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.432">
            <gDNA_intron_boundary i_start="38160" i_stop="37940" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37939" e_stop="37890" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39313" stop="39227"/>
              <exon start="38323" stop="38161"/>
              <exon start="37939" stop="37890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTCGGAAAAACAGAATCCATCCATCAACGGGAAGGCGAGAGGGCGATTGTGATTCAGTTCCCCGGTGATCGATCCATTTCTCCG : GTGGACGTAAAATACGTGCTTCTAAGATGGCACTGAGCCAGATGAAGGTTATTGAGTTGGAGGAAGGATGGGAATTTATGCAGAGGGGAATCACTAAATTGAAGAAAATTTTAGAAGGACAACAACATTCTTTCAGCTCTGAAGAGTACATGATGCTCTACAC : AACTATATATAACATGTGCACACAGAAGCCGCCAAATGATTACTCACAAC</gDNA_template>
            <first_frame> S  F  G  K  T  E  S  I  H  Q  R  E  G  E  R  A  I  V  I  Q  F  P  G  D  R  S  I  S  P  :  V  D  V  K  Y  V  L  L  R  W  H  *  A  R  *  R  L  L  S  W  R  K  D  G  N  L  C  R  G  E  S  L  N  *  R  K  F  *  K  D  N  N  I  L  S  A  L  K  S  T  *  C  S  T   : Q  L  Y  I  T  C  A  H  R  S  R  Q  M  I  T  H  N </first_frame>
            <second_frame>  V  S  E  K  Q  N  P  S  I  N  G  K  A  R  G  R  L  *  F  S  S  P  V  I  D  P  F  L  R :   W  T  *  N  T  C  F  *  D  G  T  E  P  D  E  G  Y  *  V  G  G  R  M  G  I  Y  A  E  G  N  H  *  I  E  E  N  F  R  R  T  T  T  F  F  Q  L  *  R  V  H  D  A  L  H  :  N  Y  I  *  H  V  H  T  E  A  A  K  *  L  L  T   </second_frame>
            <third_frame>   F  R  K  N  R  I  H  P  S  T  G  R  R  E  G  D  C  D  S  V  P  R  *  S  I  H  F  S   : G  G  R  K  I  R  A  S  K  M  A  L  S  Q  M  K  V  I  E  L  E  E  G  W  E  F  M  Q  R  G  I  T  K  L  K  K  I  L  E  G  Q  Q  H  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  N  D  Y  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39242" stop="39227"/>
                    <exon start="38323" stop="38161"/>
                    <exon start="37939" stop="37891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIHFSGGRKIRASKMALSQMKVIELEEGWEFMQRGITKLKKILEGQQHSFSSEEYMMLYTTIYNMCTQKPPNDYSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="40316" PGL_stop="39871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40316" e_stop="39871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="40316" e_stop="39871" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40316" stop="39871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAAATGACCAATTTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATTTAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAATAAGAATAAGAAATTCAAATAATTATAATAAAAAAATCAATAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATAATTTTTTTTAAAAAAATTTAGAAGTAACAAATATAAATTTAAAACCATTTTTTTAGCTTCCGTTAAATGAAGGGTAAATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTATAACGAGAGATATACCAACTTCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTATT</gDNA_template>
            <first_frame> L  L  *  M  T  N  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  F  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  *  E  *  E  I  Q  I  I  I  I  K  K  S  I  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  F  K  K  I  *  K  *  Q  I  *  I  *  N  H  F  F  S  F  R  *  M  K  G  K  C  E  P  F  Y  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  I  P  T  S  N  D  K  V  E  G  Y  I  R  P  F  S  L   </first_frame>
            <second_frame>  Y  C  K  *  P  I  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  L  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  N  K  N  K  K  F  K  *  L  *  *  K  N  Q  *  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  P  K  *  F  F  L  K  K  F  R  S  N  K  Y  K  F  K  T  I  F  L  A  S  V  K  *  R  V  N  V  S  H  F  I  T  A  G  V  Y  V  S  R  L  Y  N  G  K  D  I  Y  E  P  L  L  *  R  E  I  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  Y  </second_frame>
            <third_frame>   I  V  N  D  Q  F  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  Q  I  R  I  R  N  S  N  N  Y  N  K  K  I  N  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  N  L  E  V  T  N  I  N  L  K  P  F  F  *  L  P  L  N  E  G  *  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  T  Y  M  S  H  F  Y  N  E  R  Y  T  N  F  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="45148" PGL_stop="48679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45148" e_stop="45481"/>
            <exon e_start="47197" e_stop="47224"/>
            <exon e_start="47762" e_stop="47892"/>
            <exon e_start="48589" e_stop="48679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.916"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.969"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="45148" e_stop="45481" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45482" i_stop="47196" i_length="1715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47197" e_stop="47224" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47225" i_stop="47761" i_length="537"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="47762" e_stop="47892" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47893" i_stop="48588" i_length="696"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="48589" e_stop="48679" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45148" stop="45481"/>
              <exon start="47197" stop="47224"/>
              <exon start="47762" stop="47892"/>
              <exon start="48589" stop="48679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTCTTCTTCTTCTTCTTCCCCATTTACATAATTGCTGTGGAAACCCTAGGATTAATCATATGGAATTGAGCTTTGTTCCTCTTCTTAAATTGGTTGTTGCATCTGATGCGTGAATTGGTTTGATCTATTGCTTCGACGTCGGTCGGAATTTTCGATTAGCGGAGGGTACAATGGAAAATCAATTGCAATTGGCCTTGACCAGTCCTACGACGCCGTTCTCGAGCTTGTTCGAGTCGCAGAAGGAAATCCTTAATAGCCAGATTTATCAGCTCCAGAACATAGTTGTGCAACAATGTAACCTCACTGGCGTCAATCCTCTCTCTCAAGAGATG : GCTGCTGGAGCTCTTTCAATAAAAATTG : GCAAAAGGCCAAGGGATCTCCTAAACCCCAAGGCAATCAAGTATATGCAATCTATTTTCTCTATCAAAGATGCAATCAACAAGAAGGAAACACGTGAAATTAGTGCTCTTTTTGGTGTGACAGTCACACAG : GTTCGAGATTTCTTTGCAGCTCAGCGCACAAGAGTTAGAAAGTTCCTGAGGTTGTCTAGAGAGAAGCCTATCACAACCAATTTATCTATTG</gDNA_template>
            <first_frame> T  S  S  S  S  S  S  P  F  T  *  L  L  W  K  P  *  D  *  S  Y  G  I  E  L  C  S  S  S  *  I  G  C  C  I  *  C  V  N  W  F  D  L  L  L  R  R  R  S  E  F  S  I  S  G  G  Y  N  G  K  S  I  A  I  G  L  D  Q  S  Y  D  A  V  L  E  L  V  R  V  A  E  G  N  P  *  *  P  D  L  S  A  P  E  H  S  C  A  T  M  *  P  H  W  R  Q  S  S  L  S  R  D   : G  C  W  S  S  F  N  K  N  W :   Q  K  A  K  G  S  P  K  P  Q  G  N  Q  V  Y  A  I  Y  F  L  Y  Q  R  C  N  Q  Q  E  G  N  T  *  N  *  C  S  F  W  C  D  S  H  T   : G  S  R  F  L  C  S  S  A  H  K  S  *  K  V  P  E  V  V  *  R  E  A  Y  H  N  Q  F  I  Y   </first_frame>
            <second_frame>  L  L  L  L  L  L  P  H  L  H  N  C  C  G  N  P  R  I  N  H  M  E  L  S  F  V  P  L  L  K  L  V  V  A  S  D  A  *  I  G  L  I  Y  C  F  D  V  G  R  N  F  R  L  A  E  G  T  M  E  N  Q  L  Q  L  A  L  T  S  P  T  T  P  F  S  S  L  F  E  S  Q  K  E  I  L  N  S  Q  I  Y  Q  L  Q  N  I  V  V  Q  Q  C  N  L  T  G  V  N  P  L  S  Q  E  M  :  A  A  G  A  L  S  I  K  I   : G  K  R  P  R  D  L  L  N  P  K  A  I  K  Y  M  Q  S  I  F  S  I  K  D  A  I  N  K  K  E  T  R  E  I  S  A  L  F  G  V  T  V  T  Q  :  V  R  D  F  F  A  A  Q  R  T  R  V  R  K  F  L  R  L  S  R  E  K  P  I  T  T  N  L  S  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  P  I  Y  I  I  A  V  E  T  L  G  L  I  I  W  N  *  A  L  F  L  F  L  N  W  L  L  H  L  M  R  E  L  V  *  S  I  A  S  T  S  V  G  I  F  D  *  R  R  V  Q  W  K  I  N  C  N  W  P  *  P  V  L  R  R  R  S  R  A  C  S  S  R  R  R  K  S  L  I  A  R  F  I  S  S  R  T  *  L  C  N  N  V  T  S  L  A  S  I  L  S  L  K  R  W :   L  L  E  L  F  Q  *  K  L  :  A  K  G  Q  G  I  S  *  T  P  R  Q  S  S  I  C  N  L  F  S  L  S  K  M  Q  S  T  R  R  K  H  V  K  L  V  L  F  L  V  *  Q  S  H  R :   F  E  I  S  L  Q  L  S  A  Q  E  L  E  S  S  *  G  C  L  E  R  S  L  S  Q  P  I  Y  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45263" stop="45481"/>
                    <exon start="47197" stop="47224"/>
                    <exon start="47762" stop="47892"/>
                    <exon start="48589" stop="48678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGLIYCFDVGRNFRLAEGTMENQLQLALTSPTTPFSSLFESQKEILNSQIYQLQNIVVQQCNLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAIKYMQSIFSIKDAINKKETREISALFGVTVTQVRDFFAAQRTRVRKFLRLSREKPITTNLSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57527" PGL_stop="58336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57527" e_stop="58094"/>
            <exon e_start="58312" e_stop="58336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.947"/>
          <exon-only e_score="0.680"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="57527" e_stop="58094" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58095" i_stop="58311" i_length="217"/>
          </intron>
          <exon e_serial="2" e_score="0.680">
            <gDNA_exon_boundary e_start="58312" e_stop="58336" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57527" stop="58048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57532" stop="58094"/>
              <exon start="58312" stop="58336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559551" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATCAAGAAAATGCCATTCCTAACCATTACAATCCACATGTTACCGGGCATGTAGAACCAGGATTACAACAGGCTACGTGGAGAGGAAACACCAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGTCCTGATGATAGCCCTGTTAGGCGTCAGGAACAGGTTGCAAGATGGAATTACACACAACCTCAGATGAATATGAGAGACAGCTACATACCTAATTGGTCTGCATCGCGTAATCCTGGGCATTATTCTGGCTATCGTGGTCCTGACGATGGTGGTAATAGGAGGTGGGGTGACAGGAGAAGATAACCTTCAAACGGCTGGCCATTTGATTCTTTTGACGTGAGATATTCTTTAGTGTTTACATTAGAGTAGAAAGTTCTCAATAGGGTGTTGCATTTTTGCAACGTGAAATGGTTGTAAACTTATAATGTCAGCATGTCACATCACTTCATTTTGTTTCCCAATTGATACCTGTCAGCAGAAAAATAGAAAATAGAAATTCAGTTCACTTGGGATCATGCCAAGAATCTTAAGAGAAAAAAAAGAAGAAATTTATCCTA : AATTACAAAAAAAAAATAACATTAT</gDNA_template>
            <first_frame> V  I  K  K  M  P  F  L  T  I  T  I  H  M  L  P  G  M  *  N  Q  D  Y  N  R  L  R  G  E  E  T  P  T  M  P  R  E  L  G  L  N  L  G  V  L  M  I  A  L  L  G  V  R  N  R  L  Q  D  G  I  T  H  N  L  R  *  I  *  E  T  A  T  Y  L  I  G  L  H  R  V  I  L  G  I  I  L  A  I  V  V  L  T  M  V  V  I  G  G  G  V  T  G  E  D  N  L  Q  T  A  G  H  L  I  L  L  T  *  D  I  L  *  C  L  H  *  S  R  K  F  S  I  G  C  C  I  F  A  T  *  N  G  C  K  L  I  M  S  A  C  H  I  T  S  F  C  F  P  I  D  T  C  Q  Q  K  N  R  K  *  K  F  S  S  L  G  I  M  P  R  I  L  R  E  K  K  E  E  I  Y  P   : K  L  Q  K  K  N  N  I   </first_frame>
            <second_frame>  L  S  R  K  C  H  S  *  P  L  Q  S  T  C  Y  R  A  C  R  T  R  I  T  T  G  Y  V  E  R  K  H  Q  L  C  R  G  S  W  V  *  I  L  E  S  *  *  *  P  C  *  A  S  G  T  G  C  K  M  E  L  H  T  T  S  D  E  Y  E  R  Q  L  H  T  *  L  V  C  I  A  *  S  W  A  L  F  W  L  S  W  S  *  R  W  W  *  *  E  V  G  *  Q  E  K  I  T  F  K  R  L  A  I  *  F  F  *  R  E  I  F  F  S  V  Y  I  R  V  E  S  S  Q  *  G  V  A  F  L  Q  R  E  M  V  V  N  L  *  C  Q  H  V  T  S  L  H  F  V  S  Q  L  I  P  V  S  R  K  I  E  N  R  N  S  V  H  L  G  S  C  Q  E  S  *  E  K  K  K  K  K  F  I  L  :  N  Y  K  K  K  I  T  L  </second_frame>
            <third_frame>   Y  Q  E  N  A  I  P  N  H  Y  N  P  H  V  T  G  H  V  E  P  G  L  Q  Q  A  T  W  R  G  N  T  N  Y  A  E  G  A  G  F  E  S  W  S  P  D  D  S  P  V  R  R  Q  E  Q  V  A  R  W  N  Y  T  Q  P  Q  M  N  M  R  D  S  Y  I  P  N  W  S  A  S  R  N  P  G  H  Y  S  G  Y  R  G  P  D  D  G  G  N  R  R  W  G  D  R  R  R  *  P  S  N  G  W  P  F  D  S  F  D  V  R  Y  S  L  V  F  T  L  E  *  K  V  L  N  R  V  L  H  F  C  N  V  K  W  L  *  T  Y  N  V  S  M  S  H  H  F  I  L  F  P  N  *  Y  L  S  A  E  K  *  K  I  E  I  Q  F  T  W  D  H  A  K  N  L  K  R  K  K  R  R  N  L  S  * :   I  T  K  K  K  *  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57529" stop="57840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQENAIPNHYNPHVTGHVEPGLQQATWRGNTNYAEGAGFESWSPDDSPVRRQEQVARWNYTQPQMNMRDSYIPNWSASRNPGHYSGYRGPDDGGNRRWGDRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78716" PGL_stop="80070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78716" e_stop="80070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78716" e_stop="80070" e_length="1355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="79555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79223" stop="80070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79227" stop="79972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79227" stop="79751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79228" stop="79621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCTAGCAGTTTTGTGCATCAGCAGATGCCCCTTGCACCACAATTGTCCCAACAGTCTGCACCGCTTCAGGAAGCTGCAGGGTCTTATGGTGTGCCCCAGCGCGCCCCGATGGACCATTCACAGGAAATTCATCAAGCTAGCAGTTTGGTGCATCAGCAGACGCCCCTTGTGCCACAATTGGCACTGCCTCAAGCAGCTGCAGGGTCTTATGGTGTGCGCCAACACGGCCCGTTGGTCCATTCACAGGACATTCATCAAGCTAGCAGTTTTGTGCATCGGCAGATGCCCCTTGCACCACAATTAGCCCAACAGTCTGCACTGCTTCAGGAAGCTGCAGGGTCTTATGGAAATGATCATCGACCATCTCTGCTAAATCCTCGTATAAACCAGACGGTCCTTGCAAATCTTATGCATTCACAATCATCTGCCGCCTCAGAACCAGCAGTAAATAGAAATAATTACTTTTTCTCTGGATCGACGGAATACAATCAACAGAGTGCCACTGCAGCAAGAATCCAAGGTGTAACATATGGTAATATTCGATCTTCGCAAATGCCTATAGCTAATGTACAACAAAGAACTATTAGCCTACATGCACCTCAGATGTCACTAGAAAGGCCACAACTACAAACACAGAGGCAACCTGGATATGCACCTGAACATATATGGGGGACTATACCGGGATCTGCTTTAAGTCGGGTTCATCAAGAAAATGCCATTCCTAATCGTTACAATCCACATGTTGCCGGGCATGTAGAACCAGGATTACAACAGGCTGCGTGGAGAGGAAACAACAACTATGCCGAGGGAGCTGGGTTTGAATCTTGGAGGCCTGATAATAGACCTGTCAGGCGTCAGGAACAGGTAGCAAGATGGAACTATGCAGAACCTCAGATGAATATGAGAGACTGCTACAGATCTGATTGGTCTGCATCGAGTAATCCTTGGCATTATTCTGGTTATCGTGGTCATGCTGATGGTGTGAATGAGAGGCAGGGTGACGGACCTGATTGGTCTACATCGCGTAATCCTGAGCATTATTCTGGTTATCGTGGTCGTGCTGATGGTGTGAATGAGAGGCGGGGTGACAGGAGGAGGAGCTAACCATCAAACGCCAGGCCATTTGATTCTTTTGACTAGAGAGTCGTTAGTGTTTTCATCAGAGTAGAACGTTCTAGGAGGGGGTTGCATTTTGCACATGAAATGGTTGTAAACTTGTATTGTCAGCTTGTCACATTACTTTATTTTGTTCCTGAATTGATACCTGTCAACATCAAATTAGATGATTGGGAACTTGGGATCATGCCAAGAATCTTTTAGAAAAAAAAAAAAGATTTTTATCCTAGTCAAGG</gDNA_template>
            <first_frame> Q  A  S  S  F  V  H  Q  Q  M  P  L  A  P  Q  L  S  Q  Q  S  A  P  L  Q  E  A  A  G  S  Y  G  V  P  Q  R  A  P  M  D  H  S  Q  E  I  H  Q  A  S  S  L  V  H  Q  Q  T  P  L  V  P  Q  L  A  L  P  Q  A  A  A  G  S  Y  G  V  R  Q  H  G  P  L  V  H  S  Q  D  I  H  Q  A  S  S  F  V  H  R  Q  M  P  L  A  P  Q  L  A  Q  Q  S  A  L  L  Q  E  A  A  G  S  Y  G  N  D  H  R  P  S  L  L  N  P  R  I  N  Q  T  V  L  A  N  L  M  H  S  Q  S  S  A  A  S  E  P  A  V  N  R  N  N  Y  F  F  S  G  S  T  E  Y  N  Q  Q  S  A  T  A  A  R  I  Q  G  V  T  Y  G  N  I  R  S  S  Q  M  P  I  A  N  V  Q  Q  R  T  I  S  L  H  A  P  Q  M  S  L  E  R  P  Q  L  Q  T  Q  R  Q  P  G  Y  A  P  E  H  I  W  G  T  I  P  G  S  A  L  S  R  V  H  Q  E  N  A  I  P  N  R  Y  N  P  H  V  A  G  H  V  E  P  G  L  Q  Q  A  A  W  R  G  N  N  N  Y  A  E  G  A  G  F  E  S  W  R  P  D  N  R  P  V  R  R  Q  E  Q  V  A  R  W  N  Y  A  E  P  Q  M  N  M  R  D  C  Y  R  S  D  W  S  A  S  S  N  P  W  H  Y  S  G  Y  R  G  H  A  D  G  V  N  E  R  Q  G  D  G  P  D  W  S  T  S  R  N  P  E  H  Y  S  G  Y  R  G  R  A  D  G  V  N  E  R  R  G  D  R  R  R  S  *  P  S  N  A  R  P  F  D  S  F  D  *  R  V  V  S  V  F  I  R  V  E  R  S  R  R  G  L  H  F  A  H  E  M  V  V  N  L  Y  C  Q  L  V  T  L  L  Y  F  V  P  E  L  I  P  V  N  I  K  L  D  D  W  E  L  G  I  M  P  R  I  F  *  K  K  K  K  D  F  Y  P  S  Q   </first_frame>
            <second_frame>  K  L  A  V  L  C  I  S  R  C  P  L  H  H  N  C  P  N  S  L  H  R  F  R  K  L  Q  G  L  M  V  C  P  S  A  P  R  W  T  I  H  R  K  F  I  K  L  A  V  W  C  I  S  R  R  P  L  C  H  N  W  H  C  L  K  Q  L  Q  G  L  M  V  C  A  N  T  A  R  W  S  I  H  R  T  F  I  K  L  A  V  L  C  I  G  R  C  P  L  H  H  N  *  P  N  S  L  H  C  F  R  K  L  Q  G  L  M  E  M  I  I  D  H  L  C  *  I  L  V  *  T  R  R  S  L  Q  I  L  C  I  H  N  H  L  P  P  Q  N  Q  Q  *  I  E  I  I  T  F  S  L  D  R  R  N  T  I  N  R  V  P  L  Q  Q  E  S  K  V  *  H  M  V  I  F  D  L  R  K  C  L  *  L  M  Y  N  K  E  L  L  A  Y  M  H  L  R  C  H  *  K  G  H  N  Y  K  H  R  G  N  L  D  M  H  L  N  I  Y  G  G  L  Y  R  D  L  L  *  V  G  F  I  K  K  M  P  F  L  I  V  T  I  H  M  L  P  G  M  *  N  Q  D  Y  N  R  L  R  G  E  E  T  T  T  M  P  R  E  L  G  L  N  L  G  G  L  I  I  D  L  S  G  V  R  N  R  *  Q  D  G  T  M  Q  N  L  R  *  I  *  E  T  A  T  D  L  I  G  L  H  R  V  I  L  G  I  I  L  V  I  V  V  M  L  M  V  *  M  R  G  R  V  T  D  L  I  G  L  H  R  V  I  L  S  I  I  L  V  I  V  V  V  L  M  V  *  M  R  G  G  V  T  G  G  G  A  N  H  Q  T  P  G  H  L  I  L  L  T  R  E  S  L  V  F  S  S  E  *  N  V  L  G  G  G  C  I  L  H  M  K  W  L  *  T  C  I  V  S  L  S  H  Y  F  I  L  F  L  N  *  Y  L  S  T  S  N  *  M  I  G  N  L  G  S  C  Q  E  S  F  R  K  K  K  K  I  F  I  L  V  K  </second_frame>
            <third_frame>   S  *  Q  F  C  A  S  A  D  A  P  C  T  T  I  V  P  T  V  C  T  A  S  G  S  C  R  V  L  W  C  A  P  A  R  P  D  G  P  F  T  G  N  S  S  S  *  Q  F  G  A  S  A  D  A  P  C  A  T  I  G  T  A  S  S  S  C  R  V  L  W  C  A  P  T  R  P  V  G  P  F  T  G  H  S  S  S  *  Q  F  C  A  S  A  D  A  P  C  T  T  I  S  P  T  V  C  T  A  S  G  S  C  R  V  L  W  K  *  S  S  T  I  S  A  K  S  S  Y  K  P  D  G  P  C  K  S  Y  A  F  T  I  I  C  R  L  R  T  S  S  K  *  K  *  L  L  F  L  W  I  D  G  I  Q  S  T  E  C  H  C  S  K  N  P  R  C  N  I  W  *  Y  S  I  F  A  N  A  Y  S  *  C  T  T  K  N  Y  *  P  T  C  T  S  D  V  T  R  K  A  T  T  T  N  T  E  A  T  W  I  C  T  *  T  Y  M  G  D  Y  T  G  I  C  F  K  S  G  S  S  R  K  C  H  S  *  S  L  Q  S  T  C  C  R  A  C  R  T  R  I  T  T  G  C  V  E  R  K  Q  Q  L  C  R  G  S  W  V  *  I  L  E  A  *  *  *  T  C  Q  A  S  G  T  G  S  K  M  E  L  C  R  T  S  D  E  Y  E  R  L  L  Q  I  *  L  V  C  I  E  *  S  L  A  L  F  W  L  S  W  S  C  *  W  C  E  *  E  A  G  *  R  T  *  L  V  Y  I  A  *  S  *  A  L  F  W  L  S  W  S  C  *  W  C  E  *  E  A  G  *  Q  E  E  E  L  T  I  K  R  Q  A  I  *  F  F  *  L  E  S  R  *  C  F  H  Q  S  R  T  F  *  E  G  V  A  F  C  T  *  N  G  C  K  L  V  L  S  A  C  H  I  T  L  F  C  S  *  I  D  T  C  Q  H  Q  I  R  *  L  G  T  W  D  H  A  K  N  L  L  E  K  K  K  R  F  L  S  *  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78716" stop="79822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QASSFVHQQMPLAPQLSQQSAPLQEAAGSYGVPQRAPMDHSQEIHQASSLVHQQTPLVPQLALPQAAAGSYGVRQHGPLVHSQDIHQASSFVHRQMPLAPQLAQQSALLQEAAGSYGNDHRPSLLNPRINQTVLANLMHSQSSAASEPAVNRNNYFFSGSTEYNQQSATAARIQGVTYGNIRSSQMPIANVQQRTISLHAPQMSLERPQLQTQRQPGYAPEHIWGTIPGSALSRVHQENAIPNRYNPHVAGHVEPGLQQAAWRGNNNYAEGAGFESWRPDNRPVRRQEQVARWNYAEPQMNMRDCYRSDWSASSNPWHYSGYRGHADGVNERQGDGPDWSTSRNPEHYSGYRGRADGVNERRGDRRRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="80056" PGL_stop="79346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80056" e_stop="79346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80056" e_stop="79346" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80056" stop="79346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCTTTTTTTTTTTTCTAAAAGATTCTTGGCATGATCCCAAGTTCCCAATCATCTAATTTGATGTTGACAGGTATCAATTCAGGAACAAAATAAAGTAATGTGACAAGCTGACAATACAAGTTTACAACCATTTCATGTGCAAAATGCAACCCCCTCCTAGAACGTTCTACTCTGATGAAAACACTAACGACTCTCTAGTCAAAAGAATCAAATGGCCTGGCGTTTGATGGTTAGCTCCTCCTCCTGTCACCCCGCCTCTCATTCACACCATCAGCACGACCACGATAACCAGAATAATGCTCAGGATTACGCGATGTAGACCAATCAGGTCCGTCACCCTGCCTCTCATTCACACCATCAGCATGACCACGATAACCAGAATAATGCCAAGGATTACTCGATGCAGACCAATCAGATCTGTAGCAGTCTCTCATATTCATCTGAGGTTCTGCATAGTTCCATCTTGCTACCTGTTCCTGACGCCTGACAGGTCTATTATCAGGCCTCCAAGATTCAAACCCAGCTCCCTCGGCATAGTTGTTGTTTCCTCTCCACGCAGCCTGTTGTAATCCTGGTTCTACATGCCCGGCAACATGTGGATTGTAACGATTAGGAATGGCATTTTCTTGATGAACCCGACTTAAAGCAGATCCCGGTATAGTCCCCCATATATGTTCAGGTGCATATCCAGGTTGCCTCTGTGTTTG</gDNA_template>
            <first_frame> K  I  F  F  F  F  L  K  D  S  W  H  D  P  K  F  P  I  I  *  F  D  V  D  R  Y  Q  F  R  N  K  I  K  *  C  D  K  L  T  I  Q  V  Y  N  H  F  M  C  K  M  Q  P  P  P  R  T  F  Y  S  D  E  N  T  N  D  S  L  V  K  R  I  K  W  P  G  V  *  W  L  A  P  P  P  V  T  P  P  L  I  H  T  I  S  T  T  T  I  T  R  I  M  L  R  I  T  R  C  R  P  I  R  S  V  T  L  P  L  I  H  T  I  S  M  T  T  I  T  R  I  M  P  R  I  T  R  C  R  P  I  R  S  V  A  V  S  H  I  H  L  R  F  C  I  V  P  S  C  Y  L  F  L  T  P  D  R  S  I  I  R  P  P  R  F  K  P  S  S  L  G  I  V  V  V  S  S  P  R  S  L  L  *  S  W  F  Y  M  P  G  N  M  W  I  V  T  I  R  N  G  I  F  L  M  N  P  T  *  S  R  S  R  Y  S  P  P  Y  M  F  R  C  I  S  R  L  P  L  C  L </first_frame>
            <second_frame>  K  S  F  F  F  F  *  K  I  L  G  M  I  P  S  S  Q  S  S  N  L  M  L  T  G  I  N  S  G  T  K  *  S  N  V  T  S  *  Q  Y  K  F  T  T  I  S  C  A  K  C  N  P  L  L  E  R  S  T  L  M  K  T  L  T  T  L  *  S  K  E  S  N  G  L  A  F  D  G  *  L  L  L  L  S  P  R  L  S  F  T  P  S  A  R  P  R  *  P  E  *  C  S  G  L  R  D  V  D  Q  S  G  P  S  P  C  L  S  F  T  P  S  A  *  P  R  *  P  E  *  C  Q  G  L  L  D  A  D  Q  S  D  L  *  Q  S  L  I  F  I  *  G  S  A  *  F  H  L  A  T  C  S  *  R  L  T  G  L  L  S  G  L  Q  D  S  N  P  A  P  S  A  *  L  L  F  P  L  H  A  A  C  C  N  P  G  S  T  C  P  A  T  C  G  L  *  R  L  G  M  A  F  S  *  *  T  R  L  K  A  D  P  G  I  V  P  H  I  C  S  G  A  Y  P  G  C  L  C  V   </second_frame>
            <third_frame>   N  L  F  F  F  S  K  R  F  L  A  *  S  Q  V  P  N  H  L  I  *  C  *  Q  V  S  I  Q  E  Q  N  K  V  M  *  Q  A  D  N  T  S  L  Q  P  F  H  V  Q  N  A  T  P  S  *  N  V  L  L  *  *  K  H  *  R  L  S  S  Q  K  N  Q  M  A  W  R  L  M  V  S  S  S  S  C  H  P  A  S  H  S  H  H  Q  H  D  H  D  N  Q  N  N  A  Q  D  Y  A  M  *  T  N  Q  V  R  H  P  A  S  H  S  H  H  Q  H  D  H  D  N  Q  N  N  A  K  D  Y  S  M  Q  T  N  Q  I  C  S  S  L  S  Y  S  S  E  V  L  H  S  S  I  L  L  P  V  P  D  A  *  Q  V  Y  Y  Q  A  S  K  I  Q  T  Q  L  P  R  H  S  C  C  F  L  S  T  Q  P  V  V  I  L  V  L  H  A  R  Q  H  V  D  C  N  D  *  E  W  H  F  L  D  E  P  D  L  K  Q  I  P  V  *  S  P  I  Y  V  Q  V  H  I  Q  V  A  S  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79825" stop="79484"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLAPPPVTPPLIHTISTTTITRIMLRITRCRPIRSVTLPLIHTISMTTITRIMPRITRCRPIRSVAVSHIHLRFCIVPSCYLFLTPDRSIIRPPRFKPSSLGIVVVSSPRSLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="81420" PGL_stop="83840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81420" e_stop="81947"/>
            <exon e_start="82691" e_stop="82760"/>
            <exon e_start="83597" e_stop="83694"/>
            <exon e_start="83767" e_stop="83840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81420" e_stop="81947" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81948" i_stop="82690" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82691" e_stop="82760" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82761" i_stop="83596" i_length="836"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83597" e_stop="83694" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="83695" i_stop="83766" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.919">
            <gDNA_exon_boundary e_start="83767" e_stop="83840" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81420" stop="81947"/>
              <exon start="82691" stop="82760"/>
              <exon start="83597" stop="83694"/>
              <exon start="83767" stop="83840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81433" stop="81923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGAAGTACCTGATTCTCTCTTGCACATGCTAACGACTAATTTTCAGCGGCGAAAATCGGTACTGAACCAATTACAACTCCTCGCCGGCGTTTCACATCATTTCTTCATCGGAAAACTTCAACAGTAGTCGGAGGGACTCTCCAATTTGATCTCTAACATGGTAGCTAGATTCATCACAAGCAATCTCAATCGAATACGAAAAACCTACTCAGTATCAACAACTTTTAGTAGGCACAACTACGATTTCACTTCTCTATATTCTTCTCCGTATTTGCAATTGGATGATGACGATTCAGCTAGACATGTAGTGAATCCGAGTTTCATGCTGCAGAAGAGATGGCATACGGGCGATTCACATTCTCATCATCATGATCATCACGATCTCCGCTCCGGTAAAGGCGGCGAGAGGATTTTTCGGCTTGGACTTGCTGCTGACATTGGCCTCGCCGCTAGTAAAGCTTTTGCAGGTTATGTATGTGGAAGCACCGCCATTATTGCTGATGCGGCTCATTCTATATCTGATGTG : GTTTTGAGTGGTGTATCATTGCTGTCCTTTCAAGCTGCAAGGGTTCCCAAGGACAAAGAACATCCTTATG : GACATGGTAAATTTGAGACTCTTGGAGCTCTTGGAATTTCTGGTGTGCTATTGGCTACTGCTGGTGGCATAGGATGGCATGCTTTAGATGTTTTGCTG : GGATTGTGGTCTGCAGCGCCTGAAGTTTTTAATCAGTCAATGACTCATCAGCATGTGCATGAGCAACATCACCA</gDNA_template>
            <first_frame> G  E  V  P  D  S  L  L  H  M  L  T  T  N  F  Q  R  R  K  S  V  L  N  Q  L  Q  L  L  A  G  V  S  H  H  F  F  I  G  K  L  Q  Q  *  S  E  G  L  S  N  L  I  S  N  M  V  A  R  F  I  T  S  N  L  N  R  I  R  K  T  Y  S  V  S  T  T  F  S  R  H  N  Y  D  F  T  S  L  Y  S  S  P  Y  L  Q  L  D  D  D  D  S  A  R  H  V  V  N  P  S  F  M  L  Q  K  R  W  H  T  G  D  S  H  S  H  H  H  D  H  H  D  L  R  S  G  K  G  G  E  R  I  F  R  L  G  L  A  A  D  I  G  L  A  A  S  K  A  F  A  G  Y  V  C  G  S  T  A  I  I  A  D  A  A  H  S  I  S  D  V  :  V  L  S  G  V  S  L  L  S  F  Q  A  A  R  V  P  K  D  K  E  H  P  Y   : G  H  G  K  F  E  T  L  G  A  L  G  I  S  G  V  L  L  A  T  A  G  G  I  G  W  H  A  L  D  V  L  L  :  G  L  W  S  A  A  P  E  V  F  N  Q  S  M  T  H  Q  H  V  H  E  Q  H  H   </first_frame>
            <second_frame>  A  K  Y  L  I  L  S  C  T  C  *  R  L  I  F  S  G  E  N  R  Y  *  T  N  Y  N  S  S  P  A  F  H  I  I  S  S  S  E  N  F  N  S  S  R  R  D  S  P  I  *  S  L  T  W  *  L  D  S  S  Q  A  I  S  I  E  Y  E  K  P  T  Q  Y  Q  Q  L  L  V  G  T  T  T  I  S  L  L  Y  I  L  L  R  I  C  N  W  M  M  T  I  Q  L  D  M  *  *  I  R  V  S  C  C  R  R  D  G  I  R  A  I  H  I  L  I  I  M  I  I  T  I  S  A  P  V  K  A  A  R  G  F  F  G  L  D  L  L  L  T  L  A  S  P  L  V  K  L  L  Q  V  M  Y  V  E  A  P  P  L  L  L  M  R  L  I  L  Y  L  M  W :   F  *  V  V  Y  H  C  C  P  F  K  L  Q  G  F  P  R  T  K  N  I  L  M  :  D  M  V  N  L  R  L  L  E  L  L  E  F  L  V  C  Y  W  L  L  L  V  A  *  D  G  M  L  *  M  F  C  W :   D  C  G  L  Q  R  L  K  F  L  I  S  Q  *  L  I  S  M  C  M  S  N  I  T  </second_frame>
            <third_frame>   R  S  T  *  F  S  L  A  H  A  N  D  *  F  S  A  A  K  I  G  T  E  P  I  T  T  P  R  R  R  F  T  S  F  L  H  R  K  T  S  T  V  V  G  G  T  L  Q  F  D  L  *  H  G  S  *  I  H  H  K  Q  S  Q  S  N  T  K  N  L  L  S  I  N  N  F  *  *  A  Q  L  R  F  H  F  S  I  F  F  S  V  F  A  I  G  *  *  R  F  S  *  T  C  S  E  S  E  F  H  A  A  E  E  M  A  Y  G  R  F  T  F  S  S  S  *  S  S  R  S  P  L  R  *  R  R  R  E  D  F  S  A  W  T  C  C  *  H  W  P  R  R  *  *  S  F  C  R  L  C  M  W  K  H  R  H  Y  C  *  C  G  S  F  Y  I  *  C   : G  F  E  W  C  I  I  A  V  L  S  S  C  K  G  S  Q  G  Q  R  T  S  L  W :   T  W  *  I  *  D  S  W  S  S  W  N  F  W  C  A  I  G  Y  C  W  W  H  R  M  A  C  F  R  C  F  A   : G  I  V  V  C  S  A  *  S  F  *  S  V  N  D  S  S  A  C  A  *  A  T  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81549" stop="81947"/>
                    <exon start="82691" stop="82760"/>
                    <exon start="83597" stop="83694"/>
                    <exon start="83767" stop="83838"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEGLSNLISNMVARFITSNLNRIRKTYSVSTTFSRHNYDFTSLYSSPYLQLDDDDSARHVVNPSFMLQKRWHTGDSHSHHHDHHDLRSGKGGERIFRLGLAADIGLAASKAFAGYVCGSTAIIADAAHSISDVVLSGVSLLSFQAARVPKDKEHPYGHGKFETLGALGISGVLLATAGGIGWHALDVLLGLWSAAPEVFNQSMTHQHVHEQHH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92240" PGL_stop="92423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92240" e_stop="92423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="92240" e_stop="92423" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92240" stop="92423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTATAAATTTTTCATTAAAATAAAGGAATACAATGTGGTAGTACATTTATTTTGACCTTTTAAAATGATGTTGAGGTGGGTCACATAAATTAGATACTGCCAAAGCATGACAATTAGTTTCTAATAAAAATTTATGAATCATGTACAAATGGTTATATTTAATTTTTTGAAGAAAATATTT</gDNA_template>
            <first_frame> V  L  *  I  F  H  *  N  K  G  I  Q  C  G  S  T  F  I  L  T  F  *  N  D  V  E  V  G  H  I  N  *  I  L  P  K  H  D  N  *  F  L  I  K  I  Y  E  S  C  T  N  G  Y  I  *  F  F  E  E  N  I  </first_frame>
            <second_frame>  F  Y  K  F  F  I  K  I  K  E  Y  N  V  V  V  H  L  F  *  P  F  K  M  M  L  R  W  V  T  *  I  R  Y  C  Q  S  M  T  I  S  F  *  *  K  F  M  N  H  V  Q  M  V  I  F  N  F  L  K  K  I  F </second_frame>
            <third_frame>   F  I  N  F  S  L  K  *  R  N  T  M  W  *  Y  I  Y  F  D  L  L  K  *  C  *  G  G  S  H  K  L  D  T  A  K  A  *  Q  L  V  S  N  K  N  L  *  I  M  Y  K  W  L  Y  L  I  F  *  R  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="113665" PGL_stop="114331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113665" e_stop="113755"/>
            <exon e_start="113841" e_stop="114331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113665" e_stop="113755" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="113756" i_stop="113840" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113841" e_stop="114331" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113665" stop="113755"/>
              <exon start="113841" stop="114331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAAGCACTCCCTCAAGAACTTCTCCCCATTCCATTCAAGTCCATGACCAATAATATGGCTCCAGGTGGCATGTTCTCAATTACTTCAG : GTAACCTATTTGGTAATAGTCCAAGAAGTGTAGCTTCATCATCTTCCGGACTTCAACTTAGCTCAAATATCCCATCAAATTTCAATTATCTACAAGATAACGGTAAAAATAGGGTGGCTCAAGGACAAGGCCAATTGTCATCAGTTCCAATGTCAGCTACAGCGCTTTTGCAAAAAGCGGCTCAAATGGGGGCCACAGCTAGTAGTAGCATAAATTCCCCAATGATGCAAAAGAGTTTTGTAACAAGTGCTATGGCTGGTCCTGATATTAGCATAACAAGACCATCACCTAATTATGACAATTTCCAAATGCAACAAGACAGTAACAATCATCAGAGTCAGAGTCAGAATCAGAATTTAGCAGCAGTGATAAATGACATGGGAATTTATAGCGGGATACTAATGAGCAATGATCAAAACAACGATGGGGGATACATAAAAAATGTTACAGAAGTACTTGATCGCGATAATCATAATCATAGTACAAATGAT</gDNA_template>
            <first_frame> L  K  A  L  P  Q  E  L  L  P  I  P  F  K  S  M  T  N  N  M  A  P  G  G  M  F  S  I  T  S   : G  N  L  F  G  N  S  P  R  S  V  A  S  S  S  S  G  L  Q  L  S  S  N  I  P  S  N  F  N  Y  L  Q  D  N  G  K  N  R  V  A  Q  G  Q  G  Q  L  S  S  V  P  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  A  T  A  S  S  S  I  N  S  P  M  M  Q  K  S  F  V  T  S  A  M  A  G  P  D  I  S  I  T  R  P  S  P  N  Y  D  N  F  Q  M  Q  Q  D  S  N  N  H  Q  S  Q  S  Q  N  Q  N  L  A  A  V  I  N  D  M  G  I  Y  S  G  I  L  M  S  N  D  Q  N  N  D  G  G  Y  I  K  N  V  T  E  V  L  D  R  D  N  H  N  H  S  T  N  D </first_frame>
            <second_frame>  *  K  H  S  L  K  N  F  S  P  F  H  S  S  P  *  P  I  I  W  L  Q  V  A  C  S  Q  L  L  Q  :  V  T  Y  L  V  I  V  Q  E  V  *  L  H  H  L  P  D  F  N  L  A  Q  I  S  H  Q  I  S  I  I  Y  K  I  T  V  K  I  G  W  L  K  D  K  A  N  C  H  Q  F  Q  C  Q  L  Q  R  F  C  K  K  R  L  K  W  G  P  Q  L  V  V  A  *  I  P  Q  *  C  K  R  V  L  *  Q  V  L  W  L  V  L  I  L  A  *  Q  D  H  H  L  I  M  T  I  S  K  C  N  K  T  V  T  I  I  R  V  R  V  R  I  R  I  *  Q  Q  *  *  M  T  W  E  F  I  A  G  Y  *  *  A  M  I  K  T  T  M  G  D  T  *  K  M  L  Q  K  Y  L  I  A  I  I  I  I  I  V  Q  M   </second_frame>
            <third_frame>   K  S  T  P  S  R  T  S  P  H  S  I  Q  V  H  D  Q  *  Y  G  S  R  W  H  V  L  N  Y  F  R :   *  P  I  W  *  *  S  K  K  C  S  F  I  I  F  R  T  S  T  *  L  K  Y  P  I  K  F  Q  L  S  T  R  *  R  *  K  *  G  G  S  R  T  R  P  I  V  I  S  S  N  V  S  Y  S  A  F  A  K  S  G  S  N  G  G  H  S  *  *  *  H  K  F  P  N  D  A  K  E  F  C  N  K  C  Y  G  W  S  *  Y  *  H  N  K  T  I  T  *  L  *  Q  F  P  N  A  T  R  Q  *  Q  S  S  E  S  E  S  E  S  E  F  S  S  S  D  K  *  H  G  N  L  *  R  D  T  N  E  Q  *  S  K  Q  R  W  G  I  H  K  K  C  Y  R  S  T  *  S  R  *  S  *  S  *  Y  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113665" stop="113755"/>
                    <exon start="113841" stop="114331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKALPQELLPIPFKSMTNNMAPGGMFSITSGNLFGNSPRSVASSSSGLQLSSNIPSNFNYLQDNGKNRVAQGQGQLSSVPMSATALLQKAAQMGATASSSINSPMMQKSFVTSAMAGPDISITRPSPNYDNFQMQQDSNNHQSQSQNQNLAAVINDMGIYSGILMSNDQNNDGGYIKNVTEVLDRDNHNHSTND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="156201" PGL_stop="154403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="156201" e_stop="155609"/>
            <exon e_start="154437" e_stop="154403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.916"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="156201" e_stop="155609" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="155608" i_stop="154438" i_length="1171"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="154437" e_stop="154403" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156201" stop="155609"/>
              <exon start="154437" stop="154403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546563" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGATAATTTGACAAACTTAGGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTCTTGTTTGAAGTATTGCAGATGAAACAAACTCAGGGACCTAGTAGAGGTACCAGGCCCTCATGATGATGAGCCAGTCAACTGCCAATTGGAGACGTACAGAAAGTAGGTGCACACTTCTCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTCTTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT : GAAAACAAGGAACATCAAAAACACAGGGGTGACAA</gDNA_template>
            <first_frame> F  *  *  F  D  K  L  R  D  L  I  K  V  P  G  F  L  L  E  Y  C  R  C  L  V  *  S  I  A  D  E  T  N  S  G  T  *  *  R  Y  Q  A  L  M  M  M  S  Q  S  T  A  N  W  R  R  T  E  S  R  C  T  L  L  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  S  F  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  H  K  A  K  A  E  S  F  L  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V :   K  T  R  N  I  K  N  T  G  V  T  </first_frame>
            <second_frame>  F  D  N  L  T  N  L  G  T  S  *  R  Y  R  V  F  Y  L  S  I  A  G  V  L  F  E  V  L  Q  M  K  Q  T  Q  G  P  S  R  G  T  R  P  S  *  *  *  A  S  Q  L  P  I  G  D  V  Q  K  V  G  A  H  F  S  M  A  S  E  K  C  D  L  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  I  C  L  S  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W   : *  K  Q  G  T  S  K  T  Q  G  *  Q </second_frame>
            <third_frame>   L  I  I  *  Q  T  *  G  P  H  K  G  T  G  F  S  T  *  V  L  Q  V  S  C  L  K  Y  C  R  *  N  K  L  R  D  L  V  E  V  P  G  P  H  D  D  E  P  V  N  C  Q  L  E  T  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  F  V  F  Q  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  :  E  N  K  E  H  Q  K  H  R  G  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="155094" PGL_stop="156047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="155094" e_stop="155109"/>
            <exon e_start="155559" e_stop="156047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.030" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="155094" e_stop="155109" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.030" acc_prob="0.000">
            <gDNA_intron_boundary i_start="155110" i_stop="155558" i_length="449"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="155559" e_stop="156047" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155094" stop="155109"/>
              <exon start="155559" stop="156047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATCTTTTTCCT : TTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGACCTCTATTGCTCAACAAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAAGACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAAGGTCACACTTTTCTGACGCCATCGAGAAGTGTGCACCTACTTTCTGTACGTCTCCAAT</gDNA_template>
            <first_frame> F  Q  S  F  S   : F  F  N  R  F  H  *  S  S  K  A  K  A  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  R  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  *  H  N  T  P  I  P  L  *  I  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  R  N  D  S  A  F  A  L  C  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  K  D  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  L  T  P  S  R  S  V  H  L  L  S  V  R  L  Q  </first_frame>
            <second_frame>  F  N  L  F  P  :  F  S  I  V  F  T  N  L  Q  K  Q  K  R  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  D  L  Y  C  S  T  S  Q  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  F  N  T  T  H  Q  F  L  Y  R  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  M  I  L  P  L  L  C  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  *  K  T  N  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  V  G  K  V  T  L  F  *  R  H  R  E  V  C  T  Y  F  L  Y  V  S  N </second_frame>
            <third_frame>   S  I  F  F  L :   F  Q  S  F  S  L  I  F  K  S  K  S  E  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  T  S  I  A  Q  Q  A  K  V  E  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  L  T  Q  H  T  N  S  F  I  D  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  Q  M  L  L  L  S  *  E  *  F  C  L  C  F  V  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  E  R  Q  M  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  R  S  H  F  S  D  A  I  E  K  C  A  P  T  F  C  T  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="158637" PGL_stop="159021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158637" e_stop="159021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="158637" e_stop="159021" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158637" stop="159021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTATCTAATTGAGAGTGGGTTCTTGTTTTTCTTTAGCTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAATCACTAATAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAATGACTCAAAGGGTGAGTCATGTTGTACTTCGGTTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  I  *  L  R  V  G  S  C  F  S  L  A  H  I  L  V  D  L  V  M  K  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  L  *  F  R  I  K  *  Y  S  I  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  A  *  I  *  M  L  F  *  L  F  *  M  T  Q  R  V  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  S  N  *  E  W  V  L  V  F  L  *  L  I  F  W  L  I  S  L  *  R  S  K  Y  Y  M  H  K  I  R  Y  V  F  S  K  I  F  Y  D  L  E  *  N  S  I  Q  S  L  I  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  T  S  *  I  E  E  G  I  K  F  *  *  H  E  F  E  C  Y  F  D  C  F  E  *  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  Y  L  I  E  S  G  F  L  F  F  F  S  S  Y  F  G  *  S  R  Y  E  D  Q  S  I  I  C  I  K  S  G  M  Y  F  L  K  Y  F  M  I  *  N  K  I  V  F  N  H  *  *  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  L  L  K  *  K  K  V  *  N  F  N  S  M  N  L  N  V  I  L  I  V  L  N  D  S  K  G  E  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="159901" PGL_stop="159257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159901" e_stop="159257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="159901" e_stop="159257" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159901" stop="159257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTTTTTTCTCAAACCTTCTATAGAGGTGAGTTGTGACATATATCCAACCCATAATGATTTGCTCACATCTGGACCCATTCTCTTATAGAATGGTCGAGCATTCACGATACTCATCATAAGTCACATTCTCTTCAAGGAATGAACTAATTATTTATATGTACTTCATCAATTTGCATTATAAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCATTTTGAATGATCAAGTGTACCATCACTTTATTTTCTTGTATCATGATAGAGGATTTATAAACTTGTCAAATTATTGGGTTGACAACATTCACAAGTCTAATGACCTTTCGTACCATTTTGATAATGAAAACTGTCTTCACATTTCGAAGGACTATTTGGAGAACCCATAGTGTTCTTTCTTTTATAATTACCACAATGATGACTATTATAATTCCGTCCCTTCATGCCTTTTTTCATATCGTTAATCATTTGTCATCTTTCAGACTAACTATTTACTGCTACCACATTCATACGATAGAATGGAGCAAGTGAACATGCAATTTTAAAATTATCGTATGTTGCTACCACATTCTTTTCAAGGAATGGAGCAAATTCAACAGGACGAATTTCAAGACTTTTCATCAAA</gDNA_template>
            <first_frame> H  F  F  S  Q  T  F  Y  R  G  E  L  *  H  I  S  N  P  *  *  F  A  H  I  W  T  H  S  L  I  E  W  S  S  I  H  D  T  H  H  K  S  H  S  L  Q  G  M  N  *  L  F  I  C  T  S  S  I  C  I  I  S  T  L  S  *  L  *  N  S  S  Y  F  H  D  T  P  Q  H  H  F  E  *  S  S  V  P  S  L  Y  F  L  V  S  *  *  R  I  Y  K  L  V  K  L  L  G  *  Q  H  S  Q  V  *  *  P  F  V  P  F  *  *  *  K  L  S  S  H  F  E  G  L  F  G  E  P  I  V  F  F  L  L  *  L  P  Q  *  *  L  L  *  F  R  P  F  M  P  F  F  I  S  L  I  I  C  H  L  S  D  *  L  F  T  A  T  T  F  I  R  *  N  G  A  S  E  H  A  I  L  K  L  S  Y  V  A  T  T  F  F  S  R  N  G  A  N  S  T  G  R  I  S  R  L  F  I  K </first_frame>
            <second_frame>  I  F  F  L  K  P  S  I  E  V  S  C  D  I  Y  P  T  H  N  D  L  L  T  S  G  P  I  L  L  *  N  G  R  A  F  T  I  L  I  I  S  H  I  L  F  K  E  *  T  N  Y  L  Y  V  L  H  Q  F  A  L  *  A  H  C  H  D  F  K  I  H  H  I  S  M  T  H  L  N  I  I  L  N  D  Q  V  Y  H  H  F  I  F  L  Y  H  D  R  G  F  I  N  L  S  N  Y  W  V  D  N  I  H  K  S  N  D  L  S  Y  H  F  D  N  E  N  C  L  H  I  S  K  D  Y  L  E  N  P  *  C  S  F  F  Y  N  Y  H  N  D  D  Y  Y  N  S  V  P  S  C  L  F  S  Y  R  *  S  F  V  I  F  Q  T  N  Y  L  L  L  P  H  S  Y  D  R  M  E  Q  V  N  M  Q  F  *  N  Y  R  M  L  L  P  H  S  F  Q  G  M  E  Q  I  Q  Q  D  E  F  Q  D  F  S  S   </second_frame>
            <third_frame>   F  F  F  S  N  L  L  *  R  *  V  V  T  Y  I  Q  P  I  M  I  C  S  H  L  D  P  F  S  Y  R  M  V  E  H  S  R  Y  S  S  *  V  T  F  S  S  R  N  E  L  I  I  Y  M  Y  F  I  N  L  H  Y  K  H  I  V  M  T  L  K  F  I  I  F  P  *  H  T  S  T  S  F  *  M  I  K  C  T  I  T  L  F  S  C  I  M  I  E  D  L  *  T  C  Q  I  I  G  L  T  T  F  T  S  L  M  T  F  R  T  I  L  I  M  K  T  V  F  T  F  R  R  T  I  W  R  T  H  S  V  L  S  F  I  I  T  T  M  M  T  I  I  I  P  S  L  H  A  F  F  H  I  V  N  H  L  S  S  F  R  L  T  I  Y  C  Y  H  I  H  T  I  E  W  S  K  *  T  C  N  F  K  I  I  V  C  C  Y  H  I  L  F  K  E  W  S  K  F  N  R  T  N  F  K  T  F  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159602" stop="159351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCQIIGLTTFTSLMTFRTILIMKTVFTFRRTIWRTHSVLSFIITTMMTIIIPSLHAFFHIVNHLSSFRLTIYCYHIHTIEWSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159717" stop="159493"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHCHDFKIHHISMTHLNIILNDQVYHHFIFLYHDRGFINLSNYWVDNIHKSNDLSYHFDNENCLHISKDYLENP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="159531" PGL_stop="159884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159531" e_stop="159884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="159531" e_stop="159884" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159531" stop="159884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCATTATCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAAATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</gDNA_template>
            <first_frame> S  F  H  Y  Q  N  G  T  K  G  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  K  *  S  D  G  T  L  D  H  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  D  E  V  H  I  N  N  *  F  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  Q  M  *  A  N  H  Y  G  L  D  I  C  H  N  S  P  L  *  K </first_frame>
            <second_frame>  V  F  I  I  K  M  V  R  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  N  K  V  M  V  H  L  I  I  Q  N  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  L  M  K  Y  I  *  I  I  S  S  F  L  E  E  N  V  T  Y  D  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  E  Q  I  I  M  G  W  I  Y  V  T  T  H  L  Y  R   </second_frame>
            <third_frame>   F  S  L  S  K  W  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  M  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  *  *  S  T  Y  K  *  L  V  H  S  L  K  R  M  *  L  M  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  D  V  S  K  S  L  W  V  G  Y  M  S  Q  L  T  S  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="162023" PGL_stop="161348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162023" e_stop="161348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="162023" e_stop="161348" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162023" stop="161348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162023" stop="161621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGAATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCTTCGACGGTTATTTGATATCGATTCCAACAGGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAAATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  N  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  L  H  A  F  K  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  I  L  I  Y  G  L  S  V  Q  N  V  T  F  L  S  E  T  K  Y  N  *  I  V  H  F  T  W  P  T  I  Y  L  F  T  L  Y  D  R  F  E  F  K  I  L  I  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  N  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  R  I  I  D  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  Y  M  H  S  S  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  S  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  I  E  L  C  I  L  L  G  Q  P  F  I  C  S  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  L  R  R  L  F  D  I  D  S  N  R  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  K  E  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  V  S  *  T  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  E  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  F  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  I  S  P  K  C  H  F  S  K  *  N  K  I  *  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  H  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  F  D  G  Y  L  I  S  I  P  T  G  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  K  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  S  R  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="162021" stop="161791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQEFSYNLHCLARHYNYSFTCIQVFICCQIKTNLISSTKGENISTNVRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0104L22.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161570" stop="161349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQNFMKCYVNVLFYSTCLIIMTILIICSFLLQGILYLESIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="161629" PGL_stop="162592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161629" e_stop="162592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="161629" e_stop="162592" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161629" stop="162306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161630" stop="162184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161634" stop="162087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161678" stop="162260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162036" stop="162444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162112" stop="162592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTTTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGAGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCATAATATTTA</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  V  N  R  *  M  V  G  Q  V  K  C  T  I  Q  L  Y  F  V  S  L  R  K  V  T  F  W  T  D  S  P  *  I  K  I  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  F  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  F  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  R  P  T  D  C  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  Q  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  E  F  I  L  S  R  G  I  Q  D  K  I  D  *  L  R  R  C  I  I  F  </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  *  T  D  K  W  L  A  K  *  N  A  Q  F  N  Y  I  L  F  H  L  E  K  *  H  F  G  L  I  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  S  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  F  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  K  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  S  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  N  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  S  L  F  Y  P  E  E  S  K  T  K  L  I  D  Y  A  D  A  *  Y  L </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  E  Q  I  N  G  W  P  S  K  M  H  N  S  I  I  F  C  F  T  *  K  S  D  I  L  D  *  *  S  I  N  Q  D  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  F  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  *  T  Y  R  L  L  I  *  Q  I  K  Y  L  S  N  S  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  L  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  T  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  *  V  Y  S  I  P  R  N  P  R  Q  N  *  L  I  T  Q  M  H  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0104L22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 157 chains have been computed
$ 
$ memory statistics:
$ 998416 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 17214 bytes was the average size of a spliced alignment
$ 32256 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1466 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 183 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 11:14:43
-->
