psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 223 11 0 0 3 15 3 12 - SGN-E208670 359 0 249 C12HBa0075C18.1 115736 86144 86390 4 12,136,69,17, 110,124,263,342, 86144,86157,86297,86373, 184 7 0 0 4 28 6 26 + SGN-E220877 237 18 237 C12HBa0075C18.1 115736 87177 87394 8 90,36,6,2,8,25,12,12, 18,124,160,171,173,181,211,225, 87177,87280,87317,87325,87331,87341,87370,87382, 299 12 0 0 4 5 10 39850 - SGN-E231013 346 0 316 C12HBa0075C18.1 115736 46377 86538 12 30,5,12,56,4,4,12,25,99,5,7,52, 30,60,65,79,136,140,145,157,182,281,286,294, 46377,71191,86251,86264,86320,86325,86331,86344,86370,86470,86476,86486, 358 16 0 0 5 32 10 39876 - SGN-E231645 536 7 413 C12HBa0075C18.1 115736 46322 86572 13 32,31,14,56,4,4,12,25,99,5,7,73,12, 123,180,215,229,286,290,295,307,332,431,436,444,517, 46322,46377,46408,86264,86320,86325,86331,86344,86370,86470,86476,86486,86560, 80 4 0 0 1 27 1 18 - SGN-E233173 588 9 120 C12HBa0075C18.1 115736 47334 47436 2 15,69, 468,510, 47334,47367, 67 1 0 0 2 15 2 5 + SGN-E236358 403 140 223 C12HBa0075C18.1 115736 47615 47688 4 7,9,10,42, 140,156,165,181, 47615,47622,47632,47646, 57 1 0 0 1 4 2 3 - SGN-E236358 403 161 223 C12HBa0075C18.1 115736 79922 79983 3 42,12,4, 180,226,238, 79922,79966,79979, 346 14 0 0 7 50 11 54 - SGN-E236361 470 7 417 C12HBa0075C18.1 115736 86158 86572 14 36,5,10,12,56,4,4,12,25,99,5,7,73,12, 53,125,131,149,163,220,224,229,241,266,365,370,378,451, 86158,86226,86231,86251,86264,86320,86325,86331,86344,86370,86470,86476,86486,86560, 222 9 0 0 4 4 5 6 - SGN-E236361 470 6 241 C12HBa0075C18.1 115736 46490 46727 9 12,14,88,20,5,7,40,32,13, 229,242,256,344,365,370,377,418,451, 46490,46504,46519,46608,46628,46634,46642,46682,46714, 67 1 0 0 2 15 2 5 + SGN-E238371 584 140 223 C12HBa0075C18.1 115736 47615 47688 4 7,9,10,42, 140,156,165,181, 47615,47622,47632,47646, 57 1 0 0 1 4 2 3 - SGN-E238371 584 161 223 C12HBa0075C18.1 115736 79922 79983 3 42,12,4, 361,407,419, 79922,79966,79979, 424 0 0 0 0 0 1 1 - SGN-E249588 634 0 424 C12HBa0075C18.1 115736 109072 109497 2 42,382, 210,252, 109072,109115, 142 4 0 0 1 2 1 1 - SGN-E254522 590 0 148 C12HBa0075C18.1 115736 86144 86291 2 12,134, 442,456, 86144,86157, 142 4 0 0 1 2 1 1 - SGN-E256788 336 0 148 C12HBa0075C18.1 115736 86144 86291 2 12,134, 188,202, 86144,86157, 403 20 0 0 6 19 5 17 - SGN-E258838 453 11 453 C12HBa0075C18.1 115736 86248 86688 9 45,69,94,21,63,52,61,10,8, 0,48,129,223,245,309,362,423,434, 86248,86297,86375,86470,86491,86556,86608,86670,86680, 623 0 0 0 0 0 0 0 - SGN-E267430 623 0 623 C12HBa0075C18.1 115736 71401 72024 1 623, 0, 71401, 57 0 0 0 0 0 0 0 - SGN-E281839 565 0 57 C12HBa0075C18.1 115736 110469 110526 1 57, 508, 110469, 80 0 0 0 0 0 1 74 - SGN-E283537 556 0 80 C12HBa0075C18.1 115736 110469 110623 2 36,44, 476,512, 110469,110579, 131 3 0 0 1 49 2 82 + SGN-E308305 316 133 316 C12HBa0075C18.1 115736 79932 80148 3 51,40,43, 133,233,273, 79932,80058,80105, 165 3 0 0 2 15 3 56 - SGN-E308305 316 133 316 C12HBa0075C18.1 115736 47454 47678 4 43,52,8,65, 0,43,97,118, 47454,47498,47551,47613, 168 4 0 0 4 11 5 15 - SGN-E308305 316 133 316 C12HBa0075C18.1 115736 87285 87472 7 31,12,11,40,5,4,69, 0,31,43,55,97,103,114, 87285,87317,87330,87343,87384,87389,87403, 373 0 0 0 0 0 0 0 - SGN-E311871 373 0 373 C12HBa0075C18.1 115736 71405 71778 1 373, 0, 71405, 474 3 0 0 1 1 0 0 - SGN-E325609 478 0 478 C12HBa0075C18.1 115736 74885 75362 2 53,424, 0,54, 74885,74938, 327 12 0 0 6 32 8 130 + SGN-E350585 702 0 371 C12HBa0075C18.1 115736 47328 47797 9 6,56,7,47,41,8,27,117,30, 0,6,70,77,128,175,188,223,341, 47328,47379,47444,47452,47507,47551,47615,47648,47767, 200 6 0 0 4 22 7 36 + SGN-E350585 702 28 256 C12HBa0075C18.1 115736 87233 87475 8 36,4,7,33,14,42,37,33, 28,66,70,77,110,127,180,223, 87233,87270,87275,87283,87317,87339,87401,87442, 305 14 0 0 4 52 7 142 - SGN-E350585 702 0 371 C12HBa0075C18.1 115736 79813 80274 8 30,117,17,31,46,19,53,6, 331,362,485,543,578,624,643,696, 79813,79845,79966,80058,80103,80150,80170,80268, 505 23 0 0 7 19 6 16 - SGN-E369933 677 11 558 C12HBa0075C18.1 115736 86144 86688 10 12,136,69,96,21,63,52,61,10,8, 119,133,272,351,447,469,533,586,647,658, 86144,86157,86297,86373,86470,86491,86556,86608,86670,86680, 505 23 0 0 7 19 6 16 - SGN-E370015 583 11 558 C12HBa0075C18.1 115736 86144 86688 10 12,136,69,96,15,69,52,61,10,8, 25,39,178,257,353,369,439,492,553,564, 86144,86157,86297,86373,86470,86485,86556,86608,86670,86680, 363 13 0 0 5 30 13 39874 - SGN-E375077 695 7 413 C12HBa0075C18.1 115736 46322 86572 15 32,23,7,5,12,56,4,4,12,25,99,5,7,73,12, 282,339,362,369,374,388,445,449,454,466,491,590,595,603,676, 46322,46377,46465,71191,86251,86264,86320,86325,86331,86344,86370,86470,86476,86486,86560, 222 9 0 0 4 4 5 6 - SGN-E375077 695 6 241 C12HBa0075C18.1 115736 46490 46727 9 12,14,88,20,5,7,40,32,13, 454,467,481,569,590,595,602,643,676, 46490,46504,46519,46608,46628,46634,46642,46682,46714, 80 4 0 0 1 27 1 18 - SGN-E377315 691 9 120 C12HBa0075C18.1 115736 47334 47436 2 15,69, 571,613, 47334,47367, 89 4 0 0 1 56 1 75 - SGN-E539180 703 24 173 C12HBa0075C18.1 115736 79930 80098 2 53,40, 530,639, 79930,80058, 131 3 0 0 1 49 2 82 + SGN-E545167 409 134 317 C12HBa0075C18.1 115736 79932 80148 3 51,40,43, 134,234,274, 79932,80058,80105, 165 3 0 0 2 15 3 56 - SGN-E545167 409 134 317 C12HBa0075C18.1 115736 47454 47678 4 43,52,8,65, 92,135,189,210, 47454,47498,47551,47613, 168 4 0 0 4 11 5 15 - SGN-E545167 409 134 317 C12HBa0075C18.1 115736 87285 87472 7 31,12,11,40,5,4,69, 92,123,135,147,189,195,206, 87285,87317,87330,87343,87384,87389,87403, 80 4 0 0 1 27 1 18 - SGN-E550462 712 10 121 C12HBa0075C18.1 115736 47334 47436 2 15,69, 591,633, 47334,47367, 278 20 0 0 1 1 3 8209 + SGN-E578107 695 58 357 C12HBa0075C18.1 115736 85007 93514 4 114,35,27,122, 58,172,208,235, 85007,93242,93336,93392, 265 20 0 0 0 0 2 114 + SGN-E578107 695 72 357 C12HBa0075C18.1 115736 84617 85016 3 47,97,141, 72,119,216, 84617,84721,84875, 258 18 0 0 1 5 3 8560 + SGN-E578107 695 76 357 C12HBa0075C18.1 115736 84765 93601 4 11,114,58,93, 76,92,206,264, 84765,84838,93218,93508, 109 9 0 0 0 0 0 0 + SGN-E578107 695 58 176 C12HBa0075C18.1 115736 93505 93623 1 118, 58, 93505, 50 4 0 0 0 0 1 29 + SGN-E578107 695 69 123 C12HBa0075C18.1 115736 93429 93512 2 41,13, 69,110, 93429,93499, 680 9 0 0 1 1 0 0 - SGN-E689283 694 4 694 C12HBa0075C18.1 115736 74672 75361 2 51,638, 0,52, 74672,74723, 538 25 0 0 10 29 8 27 - SGN-E707636 927 1 593 C12HBa0075C18.1 115736 86144 86734 13 12,136,69,96,21,63,52,61,10,8,17,6,12, 334,348,487,566,662,684,748,801,862,873,889,907,914, 86144,86157,86297,86373,86470,86491,86556,86608,86670,86680,86697,86716,86722, 320 13 0 0 3 15 5 14 - SGN-E709972 785 4 352 C12HBa0075C18.1 115736 86144 86491 6 12,136,69,96,13,7, 433,447,586,665,761,774, 86144,86157,86297,86373,86470,86484, 281 15 0 0 4 32 11 30 - SGN-E709972 785 5 333 C12HBa0075C18.1 115736 46322 46648 13 25,4,35,17,4,4,17,5,70,76,20,13,6, 452,482,486,521,538,542,564,581,586,664,740,761,774, 46322,46353,46358,46394,46412,46417,46432,46450,46456,46531,46608,46628,46642, 43 1 0 0 0 0 1 1 + SGN-E726139 504 460 504 C12HBa0075C18.1 115736 98119 98164 2 33,11, 460,493, 98119,98153, 458 2 0 0 0 0 1 557 - SGN-E726139 504 0 460 C12HBa0075C18.1 115736 114449 115466 2 75,385, 44,119, 114449,115081, 402 2 0 0 0 0 2 164 + SGN-E726956 862 458 862 C12HBa0075C18.1 115736 98116 98684 3 280,119,5, 458,738,857, 98116,98483,98679, 457 3 0 0 0 0 1 557 - SGN-E726956 862 0 460 C12HBa0075C18.1 115736 114449 115466 2 75,385, 402,477, 114449,115081, 314 1 0 0 0 0 0 0 - SGN-E735356 320 5 320 C12HBa0075C18.1 115736 75173 75488 1 315, 0, 75173, 317 2 0 0 0 0 0 0 - SGN-E735578 319 0 319 C12HBa0075C18.1 115736 75173 75492 1 319, 0, 75173, 315 3 0 0 0 0 0 0 - SGN-E735686 319 1 319 C12HBa0075C18.1 115736 75173 75491 1 318, 0, 75173, 321 1 0 0 0 0 1 153 - SGN-E735765 322 0 322 C12HBa0075C18.1 115736 75173 75648 2 315,7, 0,315, 75173,75641, 319 1 0 0 0 0 0 0 - SGN-E735804 321 1 321 C12HBa0075C18.1 115736 75173 75493 1 320, 0, 75173, 318 1 0 0 0 0 0 0 - SGN-E736444 319 0 319 C12HBa0075C18.1 115736 75173 75492 1 319, 0, 75173, 318 1 0 0 0 0 0 0 - SGN-E736563 319 0 319 C12HBa0075C18.1 115736 75173 75492 1 319, 0, 75173, 318 1 0 0 0 0 0 0 - SGN-E736695 319 0 319 C12HBa0075C18.1 115736 75173 75492 1 319, 0, 75173, 318 1 0 0 0 0 0 0 - SGN-E736698 319 0 319 C12HBa0075C18.1 115736 75173 75492 1 319, 0, 75173, 750 3 0 0 0 0 0 0 - SGN-E739255 757 4 757 C12HBa0075C18.1 115736 74779 75532 1 753, 0, 74779,