psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 34 2 0 0 0 0 0 0 - SGN-E688749 502 40 76 C12HBa0095O18.1 138632 128014 128050 1 36, 426, 128014, 79 0 0 0 3 80 6 161 - SGN-E552910 497 257 416 C12HBa0095O18.1 138632 64399 64639 8 7,15,6,7,12,6,13,13, 81,103,118,134,141,153,159,227, 64399,64406,64425,64549,64559,64575,64585,64626, 446 0 0 0 0 0 2 1693 + SGN-E201646 461 0 446 C12HBa0095O18.1 138632 30550 32689 3 197,166,83, 0,197,363, 30550,31232,32606, 232 0 0 1 0 0 1 485 + SGN-E204344 233 0 233 C12HBa0095O18.1 138632 30600 31318 2 147,86, 0,147, 30600,31232, 477 7 0 0 0 0 1 727 - SGN-E201898 484 0 484 C12HBa0095O18.1 138632 58244 59455 2 106,378, 0,106, 58244,59077, 63 2 0 0 1 66 1 216 + SGN-E206465 606 256 387 C12HBa0095O18.1 138632 96300 96581 2 49,16, 256,371, 96300,96565, 594 12 0 0 0 0 0 0 - SGN-E206465 606 0 606 C12HBa0095O18.1 138632 74705 75311 1 606, 0, 74705, 572 0 0 0 0 0 0 0 + SGN-E207000 572 0 572 C12HBa0095O18.1 138632 48482 49054 1 572, 0, 48482, 32 1 0 0 0 0 0 0 + SGN-E577656 632 494 527 C12HBa0095O18.1 138632 53817 53850 1 33, 494, 53817, 412 6 0 0 0 0 3 836 + SGN-E319292 418 0 418 C12HBa0095O18.1 138632 20259 21513 4 64,90,72,192, 0,64,154,226, 20259,20433,21130,21321, 522 0 0 0 0 0 1 617 + SGN-E322198 522 0 522 C12HBa0095O18.1 138632 104873 106012 2 345,177, 0,345, 104873,105835, 659 0 0 1 0 0 0 0 + SGN-E379947 660 0 660 C12HBa0095O18.1 138632 48482 49142 1 660, 0, 48482, 35 2 0 0 0 0 0 0 + SGN-E378967 767 150 187 C12HBa0095O18.1 138632 48588 48625 1 37, 150, 48588, 638 4 0 0 1 7 2 7 + SGN-E379142 649 0 649 C12HBa0095O18.1 138632 48481 49130 3 609,24,9, 0,616,640, 48481,49096,49121, 691 2 0 1 0 0 2 1272 + SGN-E367961 694 0 694 C12HBa0095O18.1 138632 65533 67499 3 405,184,105, 0,405,589, 65533,66295,67394, 224 7 0 0 1 1 0 0 - SGN-E368796 258 3 235 C12HBa0095O18.1 138632 55948 56179 2 175,56, 23,199, 55948,56123, 262 11 0 0 1 1 0 0 - SGN-E368797 274 0 274 C12HBa0095O18.1 138632 59176 59449 2 4,269, 0,5, 59176,59180, 588 8 0 0 1 1 5 563 + SGN-E374841 618 0 597 C12HBa0095O18.1 138632 34591 35750 7 14,78,51,90,78,275,10, 0,14,92,143,233,311,587, 34591,34684,34843,34987,35179,35465,35740, 668 1 0 0 0 0 5 2761 + SGN-E374842 669 0 669 C12HBa0095O18.1 138632 30600 34030 6 147,166,81,83,111,81, 0,147,313,394,477,588, 30600,31232,32606,33222,33613,33949, 113 3 0 0 1 1 0 0 + SGN-E377240 682 552 669 C12HBa0095O18.1 138632 81382 81498 2 107,9, 552,660, 81382,81489, 668 0 0 0 1 1 0 0 - SGN-E377240 682 0 669 C12HBa0095O18.1 138632 22450 23118 2 9,659, 13,23, 22450,22459, 673 0 0 0 0 0 1 109 - SGN-E377241 673 0 673 C12HBa0095O18.1 138632 22959 23741 2 477,196, 0,477, 22959,23545, 602 1 0 1 0 0 0 0 - SGN-E389655 604 0 604 C12HBa0095O18.1 138632 22541 23145 1 604, 0, 22541, 624 5 0 0 1 1 2 110 - SGN-E389913 636 6 636 C12HBa0095O18.1 138632 22997 23736 4 13,44,381,191, 0,13,58,439, 22997,23011,23055,23545, 31 0 0 0 0 0 0 0 - SGN-E390309 540 372 403 C12HBa0095O18.1 138632 26730 26761 1 31, 137, 26730, 406 1 0 0 0 0 0 0 + SGN-E392672 407 0 407 C12HBa0095O18.1 138632 65532 65939 1 407, 0, 65532, 639 0 0 0 0 0 0 0 - SGN-E395444 639 0 639 C12HBa0095O18.1 138632 74673 75312 1 639, 0, 74673, 35 2 0 0 0 0 0 0 - SGN-E395693 681 626 663 C12HBa0095O18.1 138632 48588 48625 1 37, 18, 48588, 35 2 0 0 0 0 0 0 - SGN-E396610 668 626 663 C12HBa0095O18.1 138632 48588 48625 1 37, 5, 48588, 587 0 0 0 0 0 1 1 + SGN-E396728 587 0 587 C12HBa0095O18.1 138632 48481 49069 2 548,39, 0,548, 48481,49030, 35 2 0 0 0 0 0 0 - SGN-E396760 709 53 90 C12HBa0095O18.1 138632 48588 48625 1 37, 619, 48588, 440 37 0 0 0 0 2 2 + SGN-E398450 710 10 487 C12HBa0095O18.1 138632 95247 95726 3 457,14,6, 10,467,481, 95247,95705,95720, 699 0 0 0 0 0 0 0 - SGN-E398450 710 0 699 C12HBa0095O18.1 138632 73515 74214 1 699, 11, 73515, 216 0 0 0 1 1 0 0 + SGN-E537424 217 0 217 C12HBa0095O18.1 138632 15193 15409 2 185,31, 0,186, 15193,15378, 649 0 0 0 0 0 0 0 + SGN-E537425 657 0 649 C12HBa0095O18.1 138632 15193 15842 1 649, 0, 15193, 408 0 0 0 0 0 3 836 + SGN-E539071 418 0 408 C12HBa0095O18.1 138632 20277 21521 4 46,90,72,200, 0,46,136,208, 20277,20433,21130,21321, 225 0 0 0 1 1 7 843 + SGN-E539074 226 0 226 C12HBa0095O18.1 138632 20277 21345 9 45,40,12,35,52,13,3,19,6, 0,45,85,97,132,184,197,200,220, 20277,20433,20474,20487,21130,21183,21197,21320,21339, 620 0 0 0 0 0 0 0 + SGN-E539518 655 0 620 C12HBa0095O18.1 138632 12809 13429 1 620, 0, 12809, 84 4 0 0 1 44 2 46 - SGN-E544258 420 30 162 C12HBa0095O18.1 138632 84948 85082 3 23,44,21, 258,325,369, 84948,85016,85061, 571 26 0 0 1 1 1 1 + SGN-E547888 606 0 598 C12HBa0095O18.1 138632 15244 15842 3 367,217,13, 0,368,585, 15244,15611,15829, 536 0 0 1 0 0 0 0 + SGN-E547889 537 0 537 C12HBa0095O18.1 138632 15193 15730 1 537, 0, 15193, 792 0 0 0 0 0 0 0 + SGN-E548234 792 0 792 C12HBa0095O18.1 138632 12619 13411 1 792, 0, 12619, 664 0 0 0 0 0 1 109 - SGN-E549950 664 0 664 C12HBa0095O18.1 138632 22969 23742 2 467,197, 0,467, 22969,23545, 55 4 0 0 0 0 0 0 + SGN-E550227 688 629 688 C12HBa0095O18.1 138632 81382 81441 1 59, 629, 81382, 687 1 0 0 0 0 0 0 - SGN-E550227 688 0 688 C12HBa0095O18.1 138632 22507 23195 1 688, 0, 22507, 252 0 0 0 0 0 0 0 - SGN-E235558 607 161 413 C12HBa0095O18.1 138632 137067 137319 1 252, 194, 137067, 405 1 0 0 1 1 0 0 + SGN-E235966 423 0 407 C12HBa0095O18.1 138632 65533 65939 2 401,5, 0,402, 65533,65934, 350 5 0 0 0 0 0 0 + SGN-E238005 355 0 355 C12HBa0095O18.1 138632 65533 65888 1 355, 0, 65533, 252 0 0 0 0 0 0 0 - SGN-E237579 469 161 413 C12HBa0095O18.1 138632 137067 137319 1 252, 56, 137067, 377 2 0 0 0 0 0 0 + SGN-E237474 379 0 379 C12HBa0095O18.1 138632 65533 65912 1 379, 0, 65533, 252 0 0 0 0 0 0 0 - SGN-E240229 611 161 413 C12HBa0095O18.1 138632 137067 137319 1 252, 198, 137067, 511 0 0 0 1 1 1 357 + SGN-E241330 512 0 512 C12HBa0095O18.1 138632 65533 66401 3 286,119,106, 0,287,406, 65533,65819,66295, 57 2 0 0 0 0 0 0 + SGN-E242462 510 376 435 C12HBa0095O18.1 138632 20896 20955 1 59, 376, 20896, 57 2 0 0 0 0 0 0 + SGN-E242164 305 31 90 C12HBa0095O18.1 138632 20896 20955 1 59, 31, 20896, 252 0 0 0 0 0 0 0 - SGN-E244759 491 161 413 C12HBa0095O18.1 138632 137067 137319 1 252, 78, 137067, 252 0 0 0 0 0 0 0 - SGN-E231500 437 161 413 C12HBa0095O18.1 138632 137067 137319 1 252, 24, 137067, 562 1 0 0 0 0 1 109 - SGN-E233096 563 0 563 C12HBa0095O18.1 138632 23069 23741 2 367,196, 0,367, 23069,23545, 57 2 0 0 0 0 0 0 + SGN-E232069 583 376 435 C12HBa0095O18.1 138632 20896 20955 1 59, 376, 20896, 57 2 0 0 0 0 0 0 + SGN-E233438 583 376 435 C12HBa0095O18.1 138632 20896 20955 1 59, 376, 20896, 49 2 0 0 0 0 3 29 - SGN-E724716 765 630 681 C12HBa0095O18.1 138632 64549 64629 4 7,22,10,12, 84,91,113,123, 64549,64559,64585,64617, 61 0 0 0 1 58 5 289 - SGN-E725001 678 487 606 C12HBa0095O18.1 138632 64279 64629 6 14,7,12,6,10,12, 72,144,151,163,169,179, 64279,64549,64559,64575,64585,64617, 577 1 0 0 0 0 1 617 + SGN-E697769 578 0 578 C12HBa0095O18.1 138632 104871 106066 2 347,231, 0,347, 104871,105835, 257 10 0 0 0 0 0 0 + SGN-E697888 267 0 267 C12HBa0095O18.1 138632 72515 72782 1 267, 0, 72515, 823 0 0 0 0 0 5 1775 + SGN-E697994 825 2 825 C12HBa0095O18.1 138632 18914 21512 6 74,241,155,90,72,191, 2,76,317,472,562,634, 18914,19527,20168,20433,21130,21321, 726 0 0 168 0 0 0 0 - SGN-E701634 898 4 898 C12HBa0095O18.1 138632 52765 53659 1 894, 0, 52765, 896 4 0 0 0 0 3 2404 - SGN-E702203 900 0 900 C12HBa0095O18.1 138632 56131 59435 4 188,125,229,358, 0,188,313,542, 56131,56678,58121,59077, 789 66 0 0 0 0 2 2 + SGN-E708297 931 13 868 C12HBa0095O18.1 138632 94869 95726 3 835,14,6, 13,848,862, 94869,95705,95720, 927 0 0 0 0 0 0 0 - SGN-E708297 931 4 931 C12HBa0095O18.1 138632 73664 74591 1 927, 0, 73664, 444 1 0 0 0 0 2 310 + SGN-E711337 456 0 445 C12HBa0095O18.1 138632 34998 35753 3 79,78,288, 0,79,157, 34998,35179,35465, 44 0 0 0 1 1 3 125 - SGN-E713727 448 355 400 C12HBa0095O18.1 138632 64406 64575 4 15,6,7,16, 48,63,70,77, 64406,64425,64549,64559, 586 4 0 0 2 2 0 0 + SGN-E715106 592 0 592 C12HBa0095O18.1 138632 48367 48957 3 541,13,36, 0,542,556, 48367,48908,48921, 841 0 0 0 0 0 0 0 + SGN-E717182 841 0 841 C12HBa0095O18.1 138632 50780 51621 1 841, 0, 50780, 42 0 0 0 0 0 2 67258 - SGN-E244201 560 286 328 C12HBa0095O18.1 138632 13639 80939 3 13,22,7, 232,245,267, 13639,80904,80932, 136 6 0 0 1 4 1 1 + SGN-E243215 460 70 216 C12HBa0095O18.1 138632 76560 76703 3 37,59,46, 70,111,170, 76560,76597,76657, 30 0 0 0 0 0 0 0 - SGN-E243117 580 515 545 C12HBa0095O18.1 138632 102844 102874 1 30, 35, 102844, 222 1 0 0 0 0 0 0 + SGN-E245047 240 0 223 C12HBa0095O18.1 138632 85383 85606 1 223, 0, 85383, 39 3 0 0 0 0 0 0 - SGN-E251230 220 162 204 C12HBa0095O18.1 138632 111271 111313 1 42, 16, 111271, 34 2 0 0 0 0 0 0 - SGN-E251230 220 168 204 C12HBa0095O18.1 138632 128014 128050 1 36, 16, 128014, 555 1 0 0 0 0 1 727 - SGN-E252362 556 0 556 C12HBa0095O18.1 138632 58138 59421 2 212,344, 0,212, 58138,59077, 559 1 0 0 0 0 3 540 + SGN-E256250 560 0 560 C12HBa0095O18.1 138632 33644 34744 4 80,110,310,60, 0,80,190,500, 33644,33949,34295,34684, 34 2 0 0 0 0 0 0 - SGN-E256843 542 39 75 C12HBa0095O18.1 138632 128014 128050 1 36, 467, 128014, 481 0 0 0 0 0 1 727 - SGN-E258939 481 0 481 C12HBa0095O18.1 138632 58241 59449 2 109,372, 0,109, 58241,59077, 724 1 0 0 4 4 2 2045 - SGN-E257499 733 0 729 C12HBa0095O18.1 138632 56678 59448 7 51,67,7,229,335,7,29, 4,56,124,131,360,696,704, 56678,56729,56796,58121,59077,59412,59419, 758 1 0 0 1 1 3 2404 - SGN-E264156 760 0 760 C12HBa0095O18.1 138632 56286 59449 5 33,48,77,229,372, 0,33,82,159,388, 56286,56678,56726,58121,59077, 444 0 0 0 0 0 0 0 + SGN-E265236 444 0 444 C12HBa0095O18.1 138632 15194 15638 1 444, 0, 15194, 57 2 0 0 0 0 0 0 + SGN-E266935 555 253 312 C12HBa0095O18.1 138632 20896 20955 1 59, 253, 20896, 510 4 0 0 0 0 1 727 - SGN-E265415 518 4 518 C12HBa0095O18.1 138632 58150 59391 2 200,314, 0,200, 58150,59077, 403 0 0 0 1 1 4 1344 + SGN-E220455 404 0 404 C12HBa0095O18.1 138632 8251 9998 6 22,60,30,35,97,159, 0,22,83,113,148,245, 8251,8705,8765,8973,9091,9839, 543 1 0 0 3 4 8 1351 + SGN-E220592 548 0 548 C12HBa0095O18.1 138632 8102 9997 11 12,22,8,25,74,23,60,30,35,97,158, 0,14,36,44,70,144,167,228,258,293,390, 8102,8118,8141,8150,8175,8250,8705,8765,8973,9091,9839, 448 0 0 0 0 0 4 1344 + SGN-E227375 448 0 448 C12HBa0095O18.1 138632 8205 9997 5 68,90,35,97,158, 0,68,158,193,290, 8205,8705,8973,9091,9839, 401 1 0 0 0 0 4 1344 + SGN-E227445 402 0 402 C12HBa0095O18.1 138632 8251 9997 5 22,90,35,97,158, 0,22,112,147,244, 8251,8705,8973,9091,9839, 560 3 0 0 0 0 2 1013 + SGN-E271876 563 0 563 C12HBa0095O18.1 138632 18176 19752 3 159,179,225, 0,159,338, 18176,18809,19527, 621 1 0 0 0 0 5 563 + SGN-E277004 622 0 622 C12HBa0095O18.1 138632 34410 35595 6 195,78,51,90,78,130, 0,195,273,324,414,492, 34410,34684,34843,34987,35179,35465, 466 1 0 0 0 0 1 1965 + SGN-E284397 467 0 467 C12HBa0095O18.1 138632 70190 72622 2 261,206, 0,261, 70190,72416, 531 4 0 0 0 0 0 0 + SGN-E284867 535 0 535 C12HBa0095O18.1 138632 12620 13155 1 535, 0, 12620, 403 4 0 0 0 0 3 836 + SGN-E277646 417 0 407 C12HBa0095O18.1 138632 20278 21521 4 45,90,72,200, 0,45,135,207, 20278,20433,21130,21321, 445 0 0 0 0 0 0 0 + SGN-E280971 445 0 445 C12HBa0095O18.1 138632 67271 67716 1 445, 0, 67271, 346 0 0 0 0 0 1 208 + SGN-E289506 355 0 346 C12HBa0095O18.1 138632 35199 35753 2 58,288, 0,58, 35199,35465, 57 2 0 0 1 7 1 6 + SGN-E329886 550 110 176 C12HBa0095O18.1 138632 131313 131378 2 26,33, 110,143, 131313,131345, 51 0 0 0 0 0 2 23211 - SGN-E329888 584 93 144 C12HBa0095O18.1 138632 13639 36901 3 23,19,9, 440,463,482, 13639,36867,36892, 246 0 0 0 0 0 2 461 + SGN-E338361 249 3 249 C12HBa0095O18.1 138632 33612 34319 3 112,110,24, 3,115,225, 33612,33949,34295, 361 0 0 0 0 0 1 485 + SGN-E336904 376 0 361 C12HBa0095O18.1 138632 30553 31399 2 194,167, 0,194, 30553,31232, 554 0 0 0 0 0 3 1678 - SGN-E342765 561 0 554 C12HBa0095O18.1 138632 55929 58161 4 390,125,16,23, 7,397,522,538, 55929,56678,58121,58138, 293 0 0 0 0 0 1 1318 - SGN-E365240 294 1 294 C12HBa0095O18.1 138632 56742 58353 2 61,232, 0,61, 56742,58121, 63 1 0 0 2 286 1 240 + SGN-E359105 559 16 366 C12HBa0095O18.1 138632 50837 51141 3 29,25,10, 16,322,356, 50837,51106,51131, 48 0 0 0 0 0 2 19975 + SGN-E355680 493 421 469 C12HBa0095O18.1 138632 26731 46754 3 14,21,13, 421,435,456, 26731,46620,46741,