psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 479 4 0 0 4 19 2 16 - SGN-E200186 509 7 509 C12HBa0211M21.1 70832 16597 17096 6 7,26,9,6,49,386, 0,8,34,45,66,116, 16597,16604,16639,16648,16661,16710, 555 0 0 0 0 0 0 0 + SGN-E203265 562 7 562 C12HBa0211M21.1 70832 15627 16182 1 555, 7, 15627, 32 0 0 0 0 0 0 0 + SGN-E207479 625 225 257 C12HBa0211M21.1 70832 68746 68778 1 32, 225, 68746, 368 0 0 0 0 0 1 591 - SGN-E218176 385 17 385 C12HBa0211M21.1 70832 16171 17130 2 110,258, 0,110, 16171,16872, 299 15 0 0 1 2 2 592 - SGN-E225273 345 29 345 C12HBa0211M21.1 70832 16222 17128 3 59,231,24, 0,59,292, 16222,16872,17104, 396 13 0 0 1 2 2 592 - SGN-E225419 438 27 438 C12HBa0211M21.1 70832 16129 17130 3 152,231,26, 0,152,385, 16129,16872,17104, 300 6 0 1 1 2 2 592 - SGN-E226409 337 28 337 C12HBa0211M21.1 70832 16229 17128 3 52,231,24, 0,52,285, 16229,16872,17104, 345 3 0 0 1 2 2 592 - SGN-E226545 376 26 376 C12HBa0211M21.1 70832 16190 17130 3 91,231,26, 0,91,324, 16190,16872,17104, 272 0 0 0 0 0 1 591 - SGN-E232348 292 16 288 C12HBa0211M21.1 70832 16182 17045 2 99,173, 4,103, 16182,16872, 272 0 0 0 0 0 1 591 - SGN-E232424 433 16 288 C12HBa0211M21.1 70832 16182 17045 2 99,173, 145,244, 16182,16872, 266 5 0 0 1 1 2 613 - SGN-E236864 277 5 277 C12HBa0211M21.1 70832 16230 17114 4 4,47,210,10, 0,5,52,262, 16230,16234,16872,17104, 357 3 0 0 1 1 1 591 - SGN-E238764 388 27 388 C12HBa0211M21.1 70832 16179 17130 3 102,242,16, 0,102,345, 16179,16872,17114, 306 7 0 0 2 3 4 594 - SGN-E238995 345 29 345 C12HBa0211M21.1 70832 16221 17128 6 14,45,74,11,145,24, 0,14,59,134,145,292, 16221,16236,16872,16946,16958,17104, 36 0 0 0 0 0 0 0 - SGN-E244201 561 297 333 C12HBa0211M21.1 70832 68738 68774 1 36, 228, 68738, 153 10 0 0 1 17 3 314 + SGN-E245340 500 256 436 C12HBa0211M21.1 70832 94 571 4 84,11,31,37, 256,357,368,399, 94,185,206,534, 593 0 0 0 0 0 0 0 - SGN-E248601 593 0 593 C12HBa0211M21.1 70832 19551 20144 1 593, 0, 19551, 65 5 0 0 0 0 0 0 - SGN-E259395 576 1 71 C12HBa0211M21.1 70832 39763 39833 1 70, 505, 39763, 64 5 0 0 0 0 0 0 - SGN-E264033 425 0 69 C12HBa0211M21.1 70832 39763 39832 1 69, 356, 39763, 166 4 0 0 1 6 1 5 - SGN-E264970 204 17 193 C12HBa0211M21.1 70832 16870 17045 2 11,159, 11,28, 16870,16886, 571 0 0 0 0 0 0 0 + SGN-E265477 571 0 571 C12HBa0211M21.1 70832 15498 16069 1 571, 0, 15498, 592 0 0 0 0 0 0 0 - SGN-E266707 592 0 592 C12HBa0211M21.1 70832 19489 20081 1 592, 0, 19489, 521 2 0 0 0 0 0 0 + SGN-E267142 523 0 523 C12HBa0211M21.1 70832 15438 15961 1 523, 0, 15438, 441 0 0 0 0 0 0 0 - SGN-E267354 441 0 441 C12HBa0211M21.1 70832 54183 54624 1 441, 0, 54183, 687 0 0 0 0 0 0 0 + SGN-E269120 687 0 687 C12HBa0211M21.1 70832 15522 16209 1 687, 0, 15522, 48 3 0 0 0 0 0 0 + SGN-E270128 630 561 612 C12HBa0211M21.1 70832 53317 53368 1 51, 561, 53317, 318 1 0 0 0 0 0 0 + SGN-E277275 326 7 326 C12HBa0211M21.1 70832 15627 15946 1 319, 7, 15627, 372 0 0 0 0 0 0 0 + SGN-E277846 379 7 379 C12HBa0211M21.1 70832 15516 15888 1 372, 7, 15516, 587 8 0 1 0 0 2 632 + SGN-E278879 596 0 596 C12HBa0211M21.1 70832 15882 17110 3 399,191,6, 0,399,590, 15882,16872,17104, 433 2 0 0 0 0 0 0 + SGN-E279075 442 7 442 C12HBa0211M21.1 70832 15506 15941 1 435, 7, 15506, 457 5 0 0 0 0 1 225 + SGN-E279223 469 7 469 C12HBa0211M21.1 70832 15506 16193 2 161,301, 7,168, 15506,15892, 51 0 0 0 1 50 2 170 + SGN-E279223 469 144 245 C12HBa0211M21.1 70832 15688 15909 3 24,12,15, 144,218,230, 15688,15792,15894, 338 1 0 0 0 0 1 591 - SGN-E279633 360 21 360 C12HBa0211M21.1 70832 16248 17178 2 33,306, 0,33, 16248,16872, 420 0 0 0 0 0 1 1891 - SGN-E283043 420 0 420 C12HBa0211M21.1 70832 21296 23607 2 327,93, 0,327, 21296,23514, 38 0 0 0 1 1 0 0 + SGN-E283625 481 364 403 C12HBa0211M21.1 70832 68743 68781 2 4,34, 364,369, 68743,68747, 398 8 0 0 0 0 0 0 + SGN-E284057 406 0 406 C12HBa0211M21.1 70832 15512 15918 1 406, 0, 15512, 434 3 0 0 3 4 1 1 + SGN-E284985 441 0 441 C12HBa0211M21.1 70832 15657 16095 4 22,21,312,82, 0,23,46,359, 15657,15679,15701,16013, 700 1 0 0 0 0 0 0 + SGN-E285278 701 0 701 C12HBa0211M21.1 70832 15510 16211 1 701, 0, 15510, 397 1 0 0 0 0 1 591 + SGN-E287492 398 0 398 C12HBa0211M21.1 70832 15996 16985 2 285,113, 0,285, 15996,16872, 179 3 0 0 0 0 0 0 + SGN-E289449 182 0 182 C12HBa0211M21.1 70832 15588 15770 1 182, 0, 15588, 346 0 0 0 0 0 2 650 + SGN-E289937 346 0 346 C12HBa0211M21.1 70832 16118 17114 3 163,173,10, 0,163,336, 16118,16872,17104, 515 0 0 0 0 0 0 0 + SGN-E290301 515 0 515 C12HBa0211M21.1 70832 15491 16006 1 515, 0, 15491, 565 0 0 0 0 0 1 2 + SGN-E290507 565 0 565 C12HBa0211M21.1 70832 15526 16093 2 199,366, 0,199, 15526,15727, 503 0 0 0 0 0 0 0 + SGN-E291143 516 0 503 C12HBa0211M21.1 70832 15780 16283 1 503, 0, 15780, 412 0 0 0 0 0 1 591 + SGN-E292771 412 0 412 C12HBa0211M21.1 70832 15943 16946 2 338,74, 0,338, 15943,16872, 606 0 0 0 0 0 1 591 + SGN-E293072 606 0 606 C12HBa0211M21.1 70832 15917 17114 2 364,242, 0,364, 15917,16872, 35 0 0 0 0 0 0 0 - SGN-E293691 436 0 35 C12HBa0211M21.1 70832 16881 16916 1 35, 401, 16881, 161 0 0 0 0 0 0 0 - SGN-E293815 161 0 161 C12HBa0211M21.1 70832 19325 19486 1 161, 0, 19325, 346 0 0 0 0 0 2 650 + SGN-E294599 346 0 346 C12HBa0211M21.1 70832 16118 17114 3 163,173,10, 0,163,336, 16118,16872,17104, 406 11 0 0 0 0 0 0 + SGN-E295014 417 0 417 C12HBa0211M21.1 70832 15494 15911 1 417, 0, 15494, 482 0 0 0 0 0 0 0 + SGN-E295096 482 0 482 C12HBa0211M21.1 70832 15588 16070 1 482, 0, 15588, 604 0 0 0 0 0 0 0 + SGN-E296460 604 0 604 C12HBa0211M21.1 70832 15614 16218 1 604, 0, 15614, 407 1 0 0 0 0 1 591 + SGN-E296947 408 0 408 C12HBa0211M21.1 70832 15908 16907 2 373,35, 0,373, 15908,16872, 339 8 0 0 0 0 0 0 - SGN-E297077 347 0 347 C12HBa0211M21.1 70832 18911 19258 1 347, 0, 18911, 620 0 0 0 0 0 0 0 + SGN-E297915 620 0 620 C12HBa0211M21.1 70832 15614 16234 1 620, 0, 15614, 606 11 0 1 0 0 1 591 + SGN-E300603 618 0 618 C12HBa0211M21.1 70832 15917 17126 2 364,254, 0,364, 15917,16872, 410 0 0 0 0 0 0 0 + SGN-E311950 411 1 411 C12HBa0211M21.1 70832 15502 15912 1 410, 1, 15502, 520 3 0 0 0 0 2 1084 + SGN-E318072 610 47 570 C12HBa0211M21.1 70832 0 1607 3 237,93,193, 47,284,377, 0,534,1414, 608 3 0 93 1 2 5 1087 + SGN-E318169 756 50 756 C12HBa0211M21.1 70832 0 1791 7 237,93,345,7,5,12,5, 50,287,380,727,734,739,751, 0,534,1414,1759,1767,1773,1786, 543 0 0 0 1 92 3 1177 + SGN-E318207 685 50 685 C12HBa0211M21.1 70832 0 1720 4 237,93,193,20, 50,287,380,665, 0,534,1414,1700, 481 0 0 0 0 0 1 591 + SGN-E323211 481 0 481 C12HBa0211M21.1 70832 15890 16962 2 391,90, 0,391, 15890,16872, 720 1 0 3 0 0 0 0 + SGN-E327875 724 0 724 C12HBa0211M21.1 70832 15503 16227 1 724, 0, 15503, 731 0 0 0 0 0 0 0 + SGN-E327876 731 0 731 C12HBa0211M21.1 70832 15503 16234 1 731, 0, 15503, 450 0 0 0 0 0 1 253 - SGN-E328255 690 0 450 C12HBa0211M21.1 70832 53935 54638 2 238,212, 240,478, 53935,54426, 32 0 0 0 0 0 0 0 - SGN-E329384 535 131 163 C12HBa0211M21.1 70832 66633 66665 1 32, 372, 66633, 31 0 0 0 0 0 0 0 - SGN-E329384 535 130 161 C12HBa0211M21.1 70832 60793 60824 1 31, 374, 60793, 532 3 0 0 0 0 0 0 + SGN-E331526 535 0 535 C12HBa0211M21.1 70832 15519 16054 1 535, 0, 15519, 31 0 0 0 0 0 0 0 - SGN-E331667 592 147 178 C12HBa0211M21.1 70832 60793 60824 1 31, 414, 60793, 720 0 0 1 0 0 0 0 + SGN-E332118 721 0 721 C12HBa0211M21.1 70832 15512 16233 1 721, 0, 15512, 32 0 0 0 0 0 0 0 - SGN-E332703 753 112 144 C12HBa0211M21.1 70832 66633 66665 1 32, 609, 66633, 31 0 0 0 0 0 0 0 - SGN-E332703 753 111 142 C12HBa0211M21.1 70832 60793 60824 1 31, 611, 60793, 750 1 0 0 0 0 0 0 + SGN-E332884 751 0 751 C12HBa0211M21.1 70832 15496 16247 1 751, 0, 15496, 31 0 0 0 0 0 0 0 - SGN-E333126 598 121 152 C12HBa0211M21.1 70832 60793 60824 1 31, 446, 60793, 558 0 0 0 0 0 0 0 + SGN-E333160 558 0 558 C12HBa0211M21.1 70832 15496 16054 1 558, 0, 15496, 32 0 0 0 0 0 0 0 - SGN-E333458 582 129 161 C12HBa0211M21.1 70832 66633 66665 1 32, 421, 66633, 31 0 0 0 0 0 0 0 - SGN-E333458 582 128 159 C12HBa0211M21.1 70832 60793 60824 1 31, 423, 60793, 30 0 0 0 0 0 0 0 - SGN-E333750 441 206 236 C12HBa0211M21.1 70832 66635 66665 1 30, 205, 66635, 32 0 0 0 0 0 0 0 - SGN-E334222 678 129 161 C12HBa0211M21.1 70832 66633 66665 1 32, 517, 66633, 31 0 0 0 0 0 0 0 - SGN-E334222 678 128 159 C12HBa0211M21.1 70832 60793 60824 1 31, 519, 60793, 32 0 0 0 0 0 0 0 - SGN-E334635 792 122 154 C12HBa0211M21.1 70832 66633 66665 1 32, 638, 66633, 31 0 0 0 0 0 0 0 - SGN-E334635 792 121 152 C12HBa0211M21.1 70832 60793 60824 1 31, 640, 60793, 65 5 0 0 0 0 0 0 - SGN-E341592 593 98 168 C12HBa0211M21.1 70832 39763 39833 1 70, 425, 39763, 725 0 0 0 0 0 0 0 + SGN-E343062 725 0 725 C12HBa0211M21.1 70832 15493 16218 1 725, 0, 15493, 740 2 0 1 3 3 1 1 - SGN-E343349 746 0 746 C12HBa0211M21.1 70832 18819 19563 5 31,63,36,44,569, 0,31,95,132,177, 18819,18851,18914,18950,18994, 372 2 0 0 0 0 0 0 + SGN-E344006 374 0 374 C12HBa0211M21.1 70832 15865 16239 1 374, 0, 15865, 719 0 0 0 0 0 0 0 + SGN-E344463 719 0 719 C12HBa0211M21.1 70832 15496 16215 1 719, 0, 15496, 608 2 0 0 0 0 2 592 + SGN-E347830 610 0 610 C12HBa0211M21.1 70832 15737 16939 3 544,24,42, 0,544,568, 15737,16872,16897, 708 0 0 0 2 2 0 0 + SGN-E348761 710 0 710 C12HBa0211M21.1 70832 15507 16215 3 543,84,81, 0,544,629, 15507,16050,16134, 372 0 0 0 0 0 0 0 - SGN-E349037 383 0 372 C12HBa0211M21.1 70832 18468 18840 1 372, 11, 18468, 35 2 0 0 0 0 0 0 - SGN-E349548 619 13 50 C12HBa0211M21.1 70832 17026 17063 1 37, 569, 17026, 30 0 0 0 0 0 0 0 - SGN-E349972 833 803 833 C12HBa0211M21.1 70832 68744 68774 1 30, 0, 68744, 50 0 0 0 0 0 1 7933 + SGN-E351307 369 243 293 C12HBa0211M21.1 70832 60795 68778 2 20,30, 243,263, 60795,68748, 32 0 0 0 0 0 0 0 + SGN-E353584 545 512 544 C12HBa0211M21.1 70832 60792 60824 1 32, 512, 60792, 31 1 0 0 0 0 0 0 + SGN-E353584 545 513 545 C12HBa0211M21.1 70832 66635 66667 1 32, 513, 66635, 152 10 0 0 1 17 3 314 + SGN-E367779 543 177 356 C12HBa0211M21.1 70832 94 570 4 84,11,31,36, 177,278,289,320, 94,185,206,534, 34 0 0 0 0 0 1 1 - SGN-E369472 713 394 428 C12HBa0211M21.1 70832 68739 68774 2 4,30, 285,289, 68739,68744, 752 0 0 0 0 0 0 0 + SGN-E371973 759 7 759 C12HBa0211M21.1 70832 18581 19333 1 752, 7, 18581, 693 2 0 1 0 0 1 1891 - SGN-E371974 696 0 696 C12HBa0211M21.1 70832 21020 23607 2 603,93, 0,603, 21020,23514, 31 0 0 0 0 0 0 0 + SGN-E374379 720 649 680 C12HBa0211M21.1 70832 68743 68774 1 31, 649, 68743, 347 0 0 0 1 1 1 591 - SGN-E538689 385 37 385 C12HBa0211M21.1 70832 16240 17178 3 41,241,65, 0,41,283, 16240,16872,17113, 205 16 0 1 0 0 0 0 - SGN-E542364 813 579 801 C12HBa0211M21.1 70832 53599 53821 1 222, 12, 53599, 30 0 0 0 0 0 0 0 - SGN-E543727 759 100 130 C12HBa0211M21.1 70832 68744 68774 1 30, 629, 68744, 30 0 0 0 0 0 0 0 - SGN-E547738 482 87 117 C12HBa0211M21.1 70832 68746 68776 1 30, 365, 68746, 356 0 0 0 2 2 0 0 + SGN-E548097 588 230 588 C12HBa0211M21.1 70832 15519 15875 3 309,6,41, 230,540,547, 15519,15828,15834, 38 0 0 0 1 1 0 0 + SGN-E548262 638 365 404 C12HBa0211M21.1 70832 68743 68781 2 4,34, 365,370, 68743,68747, 142 10 0 0 1 7 1 1 + SGN-E703748 743 294 453 C12HBa0211M21.1 70832 38476 38629 2 13,139, 294,314, 38476,38490, 328 20 0 0 0 0 3 2202 + SGN-E709223 540 190 538 C12HBa0211M21.1 70832 33446 35996 4 109,105,51,83, 190,299,404,455, 33446,33816,35762,35913, 466 26 0 0 3 19 5 2385 + SGN-E709874 749 187 698 C12HBa0211M21.1 70832 33446 36323 6 109,105,38,114,118,8, 187,296,401,450,570,690, 33446,33816,35762,35911,36196,36315, 31 0 0 0 0 0 0 0 - SGN-E719350 759 268 299 C12HBa0211M21.1 70832 60793 60824 1 31, 460, 60793, 759 1 0 0 0 0 0 0 + SGN-E724495 777 17 777 C12HBa0211M21.1 70832 15481 16241 1 760, 17, 15481, 545 1 0 0 0 0 1 1 + SGN-E725787 546 0 546 C12HBa0211M21.1 70832 15495 16042 2 527,19, 0,527, 15495,16023, 902 0 0 0 0 0 0 0 - SGN-E727379 902 0 902 C12HBa0211M21.1 70832 20034 20936 1 902, 0, 20034, 862 1 0 0 0 0 1 591 + SGN-E732699 863 0 863 C12HBa0211M21.1 70832 15502 16956 2 779,84, 0,779, 15502,16872, 447 16 0 0 1 1 0 0 + SGN-E732772 464 0 464 C12HBa0211M21.1 70832 15632 16095 2 234,229, 0,235, 15632,15866, 811 0 0 0 0 0 2 627 + SGN-E733593 811 0 811 C12HBa0211M21.1 70832 15671 17109 3 610,196,5, 0,610,806, 15671,16872,17104, 502 0 0 0 0 0 0 0 - SGN-E734660 531 0 502 C12HBa0211M21.1 70832 18574 19076 1 502, 29, 18574, 795 1 0 0 0 0 1 1891 - SGN-E736023 796 0 796 C12HBa0211M21.1 70832 21006 23693 2 617,179, 0,617, 21006,23514, 662 1 0 0 0 0 0 0 + SGN-E737174 842 8 671 C12HBa0211M21.1 70832 18631 19294 1 663, 8, 18631, 663 0 0 0 0 0 0 0 + SGN-E737706 832 36 699 C12HBa0211M21.1 70832 18631 19294 1 663, 36, 18631, 612 3 0 0 0 0 1 591 + SGN-E737722 615 0 615 C12HBa0211M21.1 70832 15835 17041 2 446,169, 0,446, 15835,16872, 653 1 0 0 1 2 2 592 + SGN-E737860 672 0 656 C12HBa0211M21.1 70832 15799 17045 3 67,414,173, 0,69,483, 15799,15867,16872, 896 1 0 0 0 0 2 2491 - SGN-E738046 897 0 897 C12HBa0211M21.1 70832 20305 23693 3 590,128,179, 0,590,718, 20305,21495,23514, 932 1 0 1 0 0 1 1891 - SGN-E738139 934 0 934 C12HBa0211M21.1 70832 20868 23693 2 755,179, 0,755, 20868,23514, 80 3 0 0 1 2 0 0 - SGN-E745248 1449 687 772 C12HBa0211M21.1 70832 22509 22592 2 33,50, 677,712, 22509,22542, 65 5 0 0 0 0 0 0 - SGN-E745832 2230 781 851 C12HBa0211M21.1 70832 39763 39833 1 70, 1379, 39763, 474 0 0 0 1 1 0 0 + SGN-E747154 475 0 475 C12HBa0211M21.1 70832 15737 16211 2 462,12, 0,463, 15737,16199,