The mapping was made using the following fasta files:
 + as reference:     ITAG2.3_cdna.fasta
 + as quesry sets:   tomato_species_unigenes.v2.seq
      	     	     tomato_species_unigenes.v1.20090331143717.seq
		     Lycopersicon_combined.v3.20040630000000.seq

 + mapping software: blat
 + filter parameters: -minIdentity=97%
                      -minUnigeneCoverage=90%

Note: *.nofil.txt files are files where -minUnigeneCoverage filter was not 
      apply.
Note2: *.annot.txt files contains annotations from ITAG2.3_gene_models.gff3
       file. It contains 4 columns separated by TABs: UnigeneID, GeneID, 
       annootation and GoID.