Reference: Solamum tuberosum v4.0.3
Input files (downloaded from SRA): 
  + ERP000527 (single reads): Transcriptome Analysis of the potato (genotype RH89-039-16), 16 runs 
  + SRP005965 (pair ends and single reads): Genome sequence and analysis of the tuber crop potato, 7x2 and 32 runs 
  + SRP006384 (pair ends): Solanum tuberosum Transcriptome or Gene expression (SOLCAP), 6 runs
  + SRP022916 (pair ends): Solanum tuberosum Transcriptome or Gene expression (potato tuber-phytophthora infestans interactions), 36x2 runs 
  + SRP026150 (single reads):  Identification of novel potato candidate genes for quantitative resistance to Phytophthora infestans by SuperSAGE transcriptome analysis, 18 runs
Software: Tophat2

Output: 
  + pelib_juntions.bed, pair end junctions (bed)
  + srlib_juntions.bed, single reads junctions (bed)